Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 124 of 425
Found at i:36786635 original size:22 final size:23
Alignment explanation
Indices: 36786614--36786665 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
36786604 TAGACATTAT
*
36786614 TTTTTTGAAT-TATT-TTAATTAT
1 TTTTTTCAATATATTGTT-ATTAT
*
36786636 TATTTTTCAATATATTGTTTTTAT
1 T-TTTTTCAATATATTGTTATTAT
36786660 TTTTTT
1 TTTTTT
36786666 ACTTATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 1 0.04
23 13 0.52
24 9 0.36
25 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.71
Consensus pattern (23 bp):
TTTTTTCAATATATTGTTATTAT
Found at i:36800736 original size:21 final size:21
Alignment explanation
Indices: 36800710--36800751 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36800700 TATGAAATTA
36800710 GCCACCCAAAACACTTGTCCT
1 GCCACCCAAAACACTTGTCCT
* * *
36800731 GCCACCGAAATCCCTTGTCCT
1 GCCACCCAAAACACTTGTCCT
36800752 ACCTGCTACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.43, G:0.12, T:0.21
Consensus pattern (21 bp):
GCCACCCAAAACACTTGTCCT
Found at i:36807694 original size:40 final size:38
Alignment explanation
Indices: 36807650--36807829 Score: 218
Period size: 39 Copynumber: 4.6 Consensus size: 38
36807640 GTTCAAAACA
* ** * *
36807650 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGG-TATCATAACTCGCACAATTG
* *
36807690 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGG-TATCATAACTCGCACAATTG
*
36807730 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCC-GGTATCATAACTCGCACAATTG
*
36807769 CCTTCGGGCTTAG-CCGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGTATCATAACTCGCACAATTG
36807806 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGG-TATCA
36807830 CTCGAACATT
Statistics
Matches: 126, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
37 35 0.28
38 6 0.05
39 43 0.34
40 42 0.33
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (38 bp):
CCTTCGGGCTTAGCCCGGTATCATAACTCGCACAATTG
Found at i:36807797 original size:37 final size:39
Alignment explanation
Indices: 36807680--36807829 Score: 232
Period size: 39 Copynumber: 3.9 Consensus size: 39
36807670 TATGGTAACC
* * * *
36807680 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
36807720 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
36807759 CGCACAATTGCCTTCGGGCTTAG-CCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
36807796 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
36807830 CTCGAACATT
Statistics
Matches: 103, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
37 33 0.32
38 8 0.08
39 45 0.44
40 17 0.17
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:36807813 original size:76 final size:79
Alignment explanation
Indices: 36807680--36807829 Score: 234
Period size: 76 Copynumber: 1.9 Consensus size: 79
36807670 TATGGTAACC
36807680 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
*
36807745 CGGGTATCATAGCT
66 CGGATATCATAGCT
* * * *
36807759 CGCACAATTGCCTTCGGG-CTT-AGCCGG-TATCATAGCTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
36807821 CGGATATCA
66 CGGATATCA
36807830 CTCGAACATT
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
76 41 0.62
77 5 0.08
78 3 0.05
79 17 0.26
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:36811966 original size:39 final size:39
Alignment explanation
Indices: 36811906--36812048 Score: 241
Period size: 39 Copynumber: 3.6 Consensus size: 39
36811896 ATTTCTGAGC
* *
36811906 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCACAGCTCGCACAATTG
*
36811946 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCACAGCTCGCACAATTG
*
36811985 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCACAGCTCGCACAATTG
36812024 CCTTCGGGCTTAGCCCGGATATCAC
1 CCTTCGGGCTTAGCCCGGATATCAC
36812049 TCGAACATTC
Statistics
Matches: 99, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 91 0.92
40 8 0.08
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCACAGCTCGCACAATTG
Found at i:36816127 original size:40 final size:38
Alignment explanation
Indices: 36816083--36816263 Score: 227
Period size: 39 Copynumber: 4.6 Consensus size: 38
36816073 GTTCAAAACA
* ** * *
36816083 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGG-TATCATAACTCGCACAATTG
* *
36816123 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGG-TATCATAACTCGCACAATTG
*
36816163 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCC-GGTATCATAACTCGCACAATTG
*
36816202 CCTTCGGGCTTAGCCCGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGTATCATAACTCGCACAATTG
36816240 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGG-TATCA
36816264 CTCGAACATT
Statistics
Matches: 128, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 40 0.31
39 46 0.36
40 42 0.33
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (38 bp):
CCTTCGGGCTTAGCCCGGTATCATAACTCGCACAATTG
Found at i:36816231 original size:38 final size:39
Alignment explanation
Indices: 36816113--36816263 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
36816103 TATGGTAACC
* * * *
36816113 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
36816153 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
36816192 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
36816230 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
36816264 CTCGAACATT
Statistics
Matches: 105, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
38 38 0.36
39 50 0.48
40 17 0.16
ACGTcount: A:0.22, C:0.32, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:36816247 original size:77 final size:79
Alignment explanation
Indices: 36816113--36816263 Score: 243
Period size: 77 Copynumber: 1.9 Consensus size: 79
36816103 TATGGTAACC
36816113 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
*
36816178 CGGGTATCATAGCT
66 CGGATATCATAGCT
* * * *
36816192 CGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCATAGCTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
36816255 CGGATATCA
66 CGGATATCA
36816264 CTCGAACATT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
77 41 0.61
78 9 0.13
79 17 0.25
ACGTcount: A:0.22, C:0.32, G:0.23, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:36823615 original size:40 final size:38
Alignment explanation
Indices: 36823571--36823751 Score: 227
Period size: 39 Copynumber: 4.6 Consensus size: 38
36823561 GTTCAAAACA
* ** * *
36823571 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGG-TATCATAACTCGCACAATTG
* *
36823611 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGG-TATCATAACTCGCACAATTG
*
36823651 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCC-GGTATCATAACTCGCACAATTG
*
36823690 CCTTCGGGCTTAGCCCGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGTATCATAACTCGCACAATTG
36823728 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGG-TATCA
36823752 CTCGAACATT
Statistics
Matches: 128, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 40 0.31
39 46 0.36
40 42 0.33
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (38 bp):
CCTTCGGGCTTAGCCCGGTATCATAACTCGCACAATTG
Found at i:36823719 original size:38 final size:39
Alignment explanation
Indices: 36823601--36823751 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
36823591 TATGGTAACC
* * * *
36823601 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
36823641 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
36823680 CGCACAATTGCCTTCGGGCTTAGCCCGG-TATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
36823718 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
36823752 CTCGAACATT
Statistics
Matches: 105, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
38 38 0.36
39 50 0.48
40 17 0.16
ACGTcount: A:0.22, C:0.32, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:36823735 original size:77 final size:79
Alignment explanation
Indices: 36823601--36823751 Score: 243
Period size: 77 Copynumber: 1.9 Consensus size: 79
36823591 TATGGTAACC
36823601 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
*
36823666 CGGGTATCATAGCT
66 CGGATATCATAGCT
* * * *
36823680 CGCACAATTGCCTTCGGG-CTTAGCCCGG-TATCATAGCTCGCACAATTGCCTTCGGGCTTAGCC
1 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
36823743 CGGATATCA
66 CGGATATCA
36823752 CTCGAACATT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
77 41 0.61
78 9 0.13
79 17 0.25
ACGTcount: A:0.22, C:0.32, G:0.23, T:0.24
Consensus pattern (79 bp):
CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTGCCTTCGGGCTTAGCC
CGGATATCATAGCT
Found at i:36834598 original size:40 final size:40
Alignment explanation
Indices: 36834553--36834629 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
36834543 TGCAGCTCAC
* *
36834553 ACAAGAATTCATGCACATAAGTTGT-CTGGGTAAAGTATGT
1 ACAAGAATCCATGCACATAAGTT-TCCAGGGTAAAGTATGT
36834593 ACAAGAATCCATGCACATAAGTTTCCAGGGTAAAGTA
1 ACAAGAATCCATGCACATAAGTTTCCAGGGTAAAGTA
36834630 CATGCAACTG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 1 0.03
40 33 0.97
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.26
Consensus pattern (40 bp):
ACAAGAATCCATGCACATAAGTTTCCAGGGTAAAGTATGT
Found at i:36837981 original size:40 final size:39
Alignment explanation
Indices: 36837937--36838049 Score: 136
Period size: 40 Copynumber: 2.8 Consensus size: 39
36837927 TGCTGGAAAT
* * *
36837937 TATATCCGGGTTAAGACCCGAAGGCAGTTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTGAC
* * *
36837977 TATATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
*
36838017 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
36838050 ACGTGATTAA
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.03
40 59 0.94
41 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:36840535 original size:40 final size:40
Alignment explanation
Indices: 36840490--36840569 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
36840480 TGCAGCTCAC
* *
36840490 ACAAGAATTCATGCACATAAGTTGT-CTGGGTAAAGTATGT
1 ACAAGAATCCATGCACATAAGTT-TCCCGGGTAAAGTATGT
36840530 ACAAGAATCCATGCACATAAGTTTCCCGGGTAAAGTATGT
1 ACAAGAATCCATGCACATAAGTTTCCCGGGTAAAGTATGT
36840570 GCAACTGAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (40 bp):
ACAAGAATCCATGCACATAAGTTTCCCGGGTAAAGTATGT
Found at i:36848474 original size:40 final size:40
Alignment explanation
Indices: 36848346--36848497 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
36848336 ATCACGATTT
* * * **
36848346 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
36848386 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
36848426 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
36848466 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
36848498 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:36856472 original size:40 final size:40
Alignment explanation
Indices: 36856398--36856543 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
36856388 CCGCACCAAG
* * * * * *
36856398 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
36856438 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* * * *
36856478 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
* *
36856518 GCCTTCGGGTCTTAACCCGGTTATAA
1 GCCTTCGGGTCTTAGCCCGGATATAA
36856544 TTTCCAGCAT
Statistics
Matches: 89, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCACAAAT
Found at i:36856558 original size:40 final size:40
Alignment explanation
Indices: 36856430--36856581 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
36856420 ATCACGATTT
* * * **
36856430 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* *
36856470 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * * *
36856510 GCACAATTGCCTTCGGGTCTTAACCCGGTTATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
* * *
36856550 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
36856582 CATTCAATTT
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 91 0.96
41 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACCA
Found at i:36861541 original size:27 final size:28
Alignment explanation
Indices: 36861453--36861554 Score: 125
Period size: 27 Copynumber: 3.6 Consensus size: 28
36861443 ATCATGAGAT
* * *
36861453 TAGCACTAAGTGTGCGGGTTTAAAATTTGTA
1 TAGCACTAAGTGTGCGAGTTT--GA-TTATA
*
36861484 CAGCACTAAGTGTGCGAGTTTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
*
36861512 TAGCACTAATTGTGCGAG-TTGATTATA
1 TAGCACTAAGTGTGCGAGTTTGATTATA
36861539 TAGCACTAAGTGTGCG
1 TAGCACTAAGTGTGCG
36861555 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
27 24 0.38
28 20 0.31
29 1 0.02
31 19 0.30
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.33
Consensus pattern (28 bp):
TAGCACTAAGTGTGCGAGTTTGATTATA
Found at i:36884207 original size:19 final size:19
Alignment explanation
Indices: 36884159--36884207 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
36884149 TAAATGAGAG
36884159 GTTAATTAGATCTTAATTAA
1 GTTAATTAGA-CTTAATTAA
*
36884179 GTAAATTTAG-CTTAATTAA
1 GTTAA-TTAGACTTAATTAA
36884198 GATTAATTAG
1 G-TTAATTAG
36884208 GTATAAGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 14 0.56
20 7 0.28
21 4 0.16
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.43
Consensus pattern (19 bp):
GTTAATTAGACTTAATTAA
Found at i:36884417 original size:17 final size:18
Alignment explanation
Indices: 36884376--36884418 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
36884366 TGTATTTACT
36884376 TATTATATAAGTAAATAA
1 TATTATATAAGTAAATAA
* *
36884394 TAATATA-AAGTAAATTA
1 TATTATATAAGTAAATAA
36884411 TATTATAT
1 TATTATAT
36884419 TATATAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
TATTATATAAGTAAATAA
Found at i:36910186 original size:30 final size:31
Alignment explanation
Indices: 36910136--36910197 Score: 117
Period size: 30 Copynumber: 2.0 Consensus size: 31
36910126 CCATGGAGAA
36910136 AATATGGAATGCGCATGGGTAATAATTCCAT
1 AATATGGAATGCGCATGGGTAATAATTCCAT
36910167 AATATGGAATGCG-ATGGGTAATAATTCCAT
1 AATATGGAATGCGCATGGGTAATAATTCCAT
36910197 A
1 A
36910198 TTGATCCGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 18 0.58
31 13 0.42
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (31 bp):
AATATGGAATGCGCATGGGTAATAATTCCAT
Found at i:36919037 original size:46 final size:46
Alignment explanation
Indices: 36918900--36919121 Score: 202
Period size: 46 Copynumber: 4.8 Consensus size: 46
36918890 TCTCTTACGT
* * *
36918900 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GACGA
* * *
36918946 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATC-GACATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGACGA
* * * *
36918994 GTGCTAGTGTAAGACATGTCTGAGACATGCATCAGCCACGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACG-A
* * *
36919041 -AGCCAATGTAAGACATGTCTGGGACATGCATCGGCTACGAGA-TA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGA
* * *
36919085 -TGTCACTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
36919122 ACCTACACCC
Statistics
Matches: 146, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 68 0.47
47 32 0.22
48 20 0.14
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGA
Found at i:36924195 original size:47 final size:47
Alignment explanation
Indices: 36924124--36924604 Score: 746
Period size: 47 Copynumber: 10.1 Consensus size: 47
36924114 CCCTTCGGGA
* * * * * *
36924124 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36924171 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924218 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924265 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924312 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36924359 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924408 CTTTTCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924457 CTTATCACATATATATGCACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATA--CACTTTCACATTCATCACATCGGCCATTAGGC
*
36924506 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924555 CTTTTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36924602 CTT
1 CTT
36924605 CCATTAGGCC
Statistics
Matches: 409, Mismatches: 17, Indels: 16
0.93 0.04 0.04
Matches are distributed among these distances:
47 235 0.57
49 167 0.41
51 7 0.02
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36924202 original size:25 final size:25
Alignment explanation
Indices: 36924174--36924252 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
36924164 ACTCGGCCCT
*
36924174 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACATTCACATTC
** * *
36924199 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACATTC-ACATTC
*
36924221 ATCACATATATACACCTTCACATTC
1 ATCACATATATACACATTCACATTC
36924246 ATCACAT
1 ATCACAT
36924253 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACATTCACATTC
Found at i:36924392 original size:49 final size:49
Alignment explanation
Indices: 36924124--36924695 Score: 772
Period size: 49 Copynumber: 11.7 Consensus size: 49
36924114 CCCTTCGGGA
* * * * *
36924124 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36924171 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924218 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924265 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924312 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36924359 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36924408 CTTTTCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36924457 CTTATCACATATATATGCACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924506 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924555 CTTTTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACAT----C----GG----CCATTAGGC
*
36924614 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36924663 CTTATCTCATATATATACACATTCACATTCATC
1 CTTATCACATATATATACACTTTCACATTCATC
36924696 GCATAAAATC
Statistics
Matches: 483, Mismatches: 24, Indels: 34
0.89 0.04 0.06
Matches are distributed among these distances:
46 1 0.00
47 212 0.44
49 222 0.46
51 1 0.00
53 2 0.00
55 1 0.00
57 1 0.00
59 16 0.03
61 27 0.06
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36924456 original size:98 final size:96
Alignment explanation
Indices: 36924124--36924695 Score: 769
Period size: 94 Copynumber: 5.8 Consensus size: 96
36924114 CCCTTCGGGA
* * * * * * *
36924124 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
36924187 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36924218 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
36924281 ACCTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36924312 CTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
36924375 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
36924408 CTTTTCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-
*
36924473 GCACTTTCACATTCATCACATCGGTCATTAGGC
65 -CACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36924506 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTTTCACATATATAC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
36924571 ACTTTCACATTCATCACATCGGCCATTAGGCCTTCCATTAGGC
66 ACTTTCACATTCATCACAT----C----GG----CCATTAGGC
* * *
36924614 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCTCATATATAT
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTA--TCACATATAT
*
36924679 ACACATTCACATTCATC
64 ACACTTTCACATTCATC
36924696 GCATAAAATC
Statistics
Matches: 433, Mismatches: 23, Indels: 28
0.89 0.05 0.06
Matches are distributed among these distances:
94 131 0.30
95 2 0.00
96 86 0.20
97 1 0.00
98 127 0.29
100 1 0.00
104 2 0.00
108 58 0.13
110 25 0.06
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36924622 original size:59 final size:60
Alignment explanation
Indices: 36924546--36924665 Score: 206
Period size: 61 Copynumber: 2.0 Consensus size: 60
36924536 ATCACATCAG
*
36924546 CCATTAGGCCTTTTCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 CCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
*
36924605 CCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTT
1 CCATTAGGCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
36924666 ATCTCATATA
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
59 16 0.28
61 41 0.72
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (60 bp):
CCATTAGGCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
Found at i:36931483 original size:20 final size:21
Alignment explanation
Indices: 36931444--36931483 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36931434 GAATTAATGG
**
36931444 CTACACGGGTGTGTTGCCCTT
1 CTACACGGACGTGTTGCCCTT
36931465 CTACACGGACGTG-TGCCCT
1 CTACACGGACGTGTTGCCCT
36931484 GTTCCAGAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.33, G:0.28, T:0.28
Consensus pattern (21 bp):
CTACACGGACGTGTTGCCCTT
Found at i:36935062 original size:19 final size:19
Alignment explanation
Indices: 36935033--36935078 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
36935023 CAATGCACAT
* *
36935033 GCCCCTGTGCTTGGGATAC
1 GCCCGTGTGCTTGGGACAC
*
36935052 GTCCGTGTGCTTGGGACAC
1 GCCCGTGTGCTTGGGACAC
36935071 GCCCGTGT
1 GCCCGTGT
36935079 CCCTTACCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.09, C:0.30, G:0.35, T:0.26
Consensus pattern (19 bp):
GCCCGTGTGCTTGGGACAC
Found at i:36940370 original size:29 final size:29
Alignment explanation
Indices: 36940337--36940497 Score: 164
Period size: 29 Copynumber: 5.6 Consensus size: 29
36940327 GTGACGAGAT
*
36940337 TGGCACTAAGTGTGCGTGTTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
36940366 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
36940395 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ** * * ***
36940424 CGGCATTGGGTGTGCGAGCTCGAAGGCTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
36940453 TGGCACTATGTGTGCGGGCT-TAAATCGA-A
1 TGGCACTAAGTGTGCGTGCTGGAAAT--ATA
36940482 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36940498 AAATCGAGTA
Statistics
Matches: 108, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.02
29 106 0.98
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:36947237 original size:13 final size:13
Alignment explanation
Indices: 36947219--36947244 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36947209 AAGTAATCAA
36947219 ACACGGGCGTGTC
1 ACACGGGCGTGTC
36947232 ACACGGGCGTGTC
1 ACACGGGCGTGTC
36947245 CCTGCCAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:36950450 original size:58 final size:56
Alignment explanation
Indices: 36950315--36950450 Score: 155
Period size: 56 Copynumber: 2.4 Consensus size: 56
36950305 CATGGCATTG
* * * * *
36950315 ATATATGTGTGTGAGTAAGACGATGTTTTATACGTTGGCATCGATATGTGACTCCA
1 ATATATGTGTGCGAGTAAGACCACGTTTTATACATTGGCATCGATATATGACTCCA
* * * *
36950371 ATATATGTATGCAAGTGAGACCACGTTTTATACATTGGCATCGATATATGACTCTGA
1 ATATATGTGTGCGAGTAAGACCACGTTTTATACATTGGCATCGATATATGACTC-CA
* *
36950428 TATATATGTGTACGATTAAGACC
1 -ATATATGTGTGCGAGTAAGACC
36950451 CTATCTGAGA
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
56 46 0.72
57 1 0.02
58 17 0.27
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTTATACATTGGCATCGATATATGACTCCA
Found at i:36971105 original size:35 final size:35
Alignment explanation
Indices: 36971038--36971105 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
36971028 TGCATTAAGG
* *
36971038 ATTTAGCCCGGACGGGTAATCCGATCAGGATCTAA
1 ATTTAGCCCGGACGGGTAATCAGATCACGATCTAA
* *
36971073 ATTTAGCCTGGACTGGTAATTCAGATC-CGATCT
1 ATTTAGCCCGGACGGGTAA-TCAGATCACGATCT
36971106 CATTTGAGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 22 0.79
36 6 0.21
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (35 bp):
ATTTAGCCCGGACGGGTAATCAGATCACGATCTAA
Found at i:36972967 original size:29 final size:28
Alignment explanation
Indices: 36972929--36973031 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 28
36972919 GTGACGAGAT
* *
36972929 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
36972958 TGGCACTAAGTGTGCGAGCTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
36972987 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
36973016 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
36973032 TGATCGATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
28 4 0.06
29 63 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:36981321 original size:39 final size:39
Alignment explanation
Indices: 36981277--36981512 Score: 402
Period size: 39 Copynumber: 6.1 Consensus size: 39
36981267 ATGCAAGAAA
36981277 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
36981316 CTGGAAATGTATCCGGGCTAAAGTCCCGCAAGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
36981355 CTGGAAATATATCCGGGCTAAAGTCCCGCAGGTTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
36981394 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
36981433 CTAGAAATGTATCC-GGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
36981471 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
36981510 CTG
1 CTG
36981513 ATAATATAAT
Statistics
Matches: 184, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
38 36 0.20
39 148 0.80
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:36985071 original size:123 final size:123
Alignment explanation
Indices: 36984852--36985190 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
36984842 GAATTATGTG
36984852 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
36984917 GCTAAGTCCTGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
36984975 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
36985040 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * * *
36985098 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTATGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
36985163 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
36985191 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:36985214 original size:40 final size:40
Alignment explanation
Indices: 36985159--36985362 Score: 201
Period size: 40 Copynumber: 5.1 Consensus size: 40
36985149 TGAATGATAC
* * * *
36985159 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* * * * * *
36985199 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* * ** *
36985239 CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* ** *
36985279 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* * **
36985319 CCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
36985359 CCGG
1 CCGG
36985363 TTGTATTCCG
Statistics
Matches: 136, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 136 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
Found at i:36985293 original size:80 final size:80
Alignment explanation
Indices: 36985159--36985362 Score: 241
Period size: 80 Copynumber: 2.5 Consensus size: 80
36985149 TGAATGATAC
* ** * * *
36985159 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
*
36985224 TGCTAGT-G-ACTACAT
66 TGCAAGTCGTACT--AT
* * * *
36985239 CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
*
36985304 TGCAAGTCGTTCTAT
66 TGCAAGTCGTACTAT
* * *
36985319 CCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
36985363 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
80 103 0.97
81 1 0.01
82 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
TGCAAGTCGTACTAT
Found at i:36990976 original size:123 final size:123
Alignment explanation
Indices: 36990758--36991095 Score: 606
Period size: 123 Copynumber: 2.8 Consensus size: 123
36990748 GAATTATGTG
36990758 AAATGAAATATGGATGTGTAATGATTATTG-TATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
36990822 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
36990880 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
36990945 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
36991003 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
36991068 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
36991096 AATTATATCC
Statistics
Matches: 208, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
122 30 0.14
123 178 0.86
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:36991119 original size:40 final size:40
Alignment explanation
Indices: 36991064--36991267 Score: 194
Period size: 40 Copynumber: 5.1 Consensus size: 40
36991054 TGAATGATAC
* * * *
36991064 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* * * * * *
36991104 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* * ** *
36991144 CTGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
* ** *
36991184 CCGGGCTAA-TCCTCGAAGGCATTTGTGCAAGTCGTTCTAT
1 CCGGGCTAAGACC-CGAAGGCATTTGTGCAAGTAATTATAT
* **
36991224 CCGGGCTAAGACCCGAAGGCATTTGTGCATGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
36991264 CCGG
1 CCGG
36991268 TTGTATTCCG
Statistics
Matches: 135, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
39 2 0.01
40 131 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATTATAT
Found at i:36993652 original size:40 final size:40
Alignment explanation
Indices: 36993607--36993774 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
36993597 CGGAATATAA
36993607 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
36993647 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
36993687 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
36993727 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
36993767 CCGGATAT
1 CCGGATAT
36993775 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:36993757 original size:80 final size:80
Alignment explanation
Indices: 36993623--36993772 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
36993613 ATAACCACGT
* *
36993623 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
36993688 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
36993703 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
36993766 CCCGGAT
64 CCCGGAT
36993773 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:37007381 original size:39 final size:39
Alignment explanation
Indices: 37007337--37007532 Score: 315
Period size: 39 Copynumber: 5.1 Consensus size: 39
37007327 ATGCAAGACA
37007337 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
37007376 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
37007415 CTGGAAATATATCCGGGC-AAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
37007453 CTGGAAATGTATCCAGCCCAAAGT-CCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
37007491 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
37007530 CTG
1 CTG
37007533 ATAATATAAT
Statistics
Matches: 144, Mismatches: 11, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
38 67 0.47
39 77 0.53
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:37007446 original size:77 final size:76
Alignment explanation
Indices: 37007337--37007532 Score: 302
Period size: 77 Copynumber: 2.5 Consensus size: 76
37007327 ATGCAAGACA
* * *
37007337 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
1 CTGGAAATGTATCCGGGC-AAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCAGCCCAAAGT-C
37007402 CGCAGGCTTCGTG
64 CGCAGGCTTCGTG
* *
37007415 CTGGAAATATATCCGGGCAAAGTCCCACAGGCTTCGTGCTGGAAATGTATCCAGCCCAAAGTCCG
1 CTGGAAATGTATCCGGGCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCAGCCCAAAGTCCG
37007480 CAGGCTTCGTG
66 CAGGCTTCGTG
* *
37007491 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 CTGGAAATGTATCCGGG-CAAAGTCCCGCAGGCTTCGTGCTG
37007533 ATAATATAAT
Statistics
Matches: 108, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
76 30 0.28
77 61 0.56
78 17 0.16
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (76 bp):
CTGGAAATGTATCCGGGCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCAGCCCAAAGTCCG
CAGGCTTCGTG
Found at i:37018302 original size:40 final size:40
Alignment explanation
Indices: 37018246--37018423 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
37018236 CGGATGATAA
*
37018246 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37018286 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
37018326 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37018366 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
37018406 CC-TGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37018424 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
39 16 0.12
40 112 0.88
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37019904 original size:14 final size:14
Alignment explanation
Indices: 37019887--37019917 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
37019877 ATGTTTTATA
37019887 TTATAATATAACAT
1 TTATAATATAACAT
*
37019901 TTATAATATAATAT
1 TTATAATATAACAT
37019915 TTA
1 TTA
37019918 ATTTACTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (14 bp):
TTATAATATAACAT
Found at i:37023696 original size:22 final size:22
Alignment explanation
Indices: 37023671--37023715 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
37023661 GGGTACGCAT
*
37023671 AGTATCCTGCACTTAGTACTAC
1 AGTAGCCTGCACTTAGTACTAC
*
37023693 AGTAGCCTGCACTTAGTATTAC
1 AGTAGCCTGCACTTAGTACTAC
37023715 A
1 A
37023716 CATGCGACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (22 bp):
AGTAGCCTGCACTTAGTACTAC
Found at i:37023754 original size:71 final size:73
Alignment explanation
Indices: 37023620--37023764 Score: 195
Period size: 71 Copynumber: 2.0 Consensus size: 73
37023610 TGATACACGT
* * * * * *
37023620 AGTAGCTTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTATCCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCCGGTACACATAGTAGCCTGCACTT
37023685 AGTACTAC
66 AGTACTAC
* * *
37023693 AGTAGCCTGCACTTAGTATTACACATGCGA-CCAA-TTATCCGGTACACGTAGTAGCCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCCGGTACACATAGTAGCCTGCACTT
37023756 AGTACTAC
66 AGTACTAC
37023764 A
1 A
37023765 CATGTGACCT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
71 34 0.54
72 3 0.05
73 26 0.41
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (73 bp):
AGTAGCCTGCACTTAGTACTACACACGCGATCCAAGTTATCCGGTACACATAGTAGCCTGCACTT
AGTACTAC
Found at i:37024040 original size:27 final size:27
Alignment explanation
Indices: 37024000--37024053 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
37023990 AGGTACAACC
* *
37024000 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
37024027 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
37024054 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:37025039 original size:25 final size:25
Alignment explanation
Indices: 37025011--37025105 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 25
37025001 CTCTTTTAAT
* * *
37025011 AACTAAGGCAATGCCCTTTTTGATA
1 AACTAAGGCAAAGCCCTTTTCGGTA
**
37025036 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAAGGCAAAGCCCTTTTCGGTA
*
37025061 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTAAGGCAAAGCCCTTTTCGGTA
* *
37025086 AACTGAGGCATAGCCCTTTT
1 AACTAAGGCAAAGCCCTTTT
37025106 AGCACTTCCT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (25 bp):
AACTAAGGCAAAGCCCTTTTCGGTA
Found at i:37025077 original size:50 final size:50
Alignment explanation
Indices: 37025011--37025105 Score: 136
Period size: 50 Copynumber: 1.9 Consensus size: 50
37025001 CTCTTTTAAT
* * *
37025011 AACTAAGGCAATGCCCTTTTTGATAAACTGGGGCAAAGCCCTTTTCGGTA
1 AACTAAGGCAAAGCCCTTTTCGATAAACTGAGGCAAAGCCCTTTTCGGTA
* * *
37025061 AACTAGGGCAAAGCCCTTTTCGGTAAACTGAGGCATAGCCCTTTT
1 AACTAAGGCAAAGCCCTTTTCGATAAACTGAGGCAAAGCCCTTTT
37025106 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (50 bp):
AACTAAGGCAAAGCCCTTTTCGATAAACTGAGGCAAAGCCCTTTTCGGTA
Found at i:37025355 original size:54 final size:54
Alignment explanation
Indices: 37025297--37025409 Score: 118
Period size: 54 Copynumber: 2.1 Consensus size: 54
37025287 TTAACACCCT
* *
37025297 AGGGGCAAAATGGTAATTTTACCCCACAACAGTATCTCAGTAATTCTACCCTAC
1 AGGGGCAAAATAGTAATTCTACCCCACAACAGTATCTCAGTAATTCTACCCTAC
* *** * ** * * *
37025351 AGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTAATTTTACCCTAC
1 AGGGGCAAAATAGTAATTCTACCCCACAACAGTATCTCAGTAATTCTACCCTAC
37025405 AGGGG
1 AGGGG
37025410 TATTTTCGGT
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (54 bp):
AGGGGCAAAATAGTAATTCTACCCCACAACAGTATCTCAGTAATTCTACCCTAC
Found at i:37025430 original size:82 final size:81
Alignment explanation
Indices: 37025337--37025606 Score: 396
Period size: 82 Copynumber: 3.3 Consensus size: 81
37025327 AGTATCTCAG
* *
37025337 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTAATTTTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
*
37025402 TACAGGGGTATTTTCGG
66 TACAGGGGTA-TTTCGA
* *
37025419 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTATCCTACATGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
*
37025484 TACAGGGGTATTTCAA
66 TACAGGGGTATTTCGA
* * * *
37025500 TAATTCTACCCTACAGAGGTATTTCGGTAATTCTGTAGGCCTACAGGGGTATTTCGGTAATTCTA
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTC--TA-CCCTACAAGGGTATTTCGGTAATTCTA
**
37025565 CCCTACAAAGGTATTTCGA
63 CCCTACAGGGGTATTTCGA
37025584 TAATTCTACCCTACAGGGGTATT
1 TAATTCTACCCTACAGGGGTATT
37025607 ACGATATTTT
Statistics
Matches: 171, Mismatches: 14, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
81 35 0.20
82 71 0.42
83 2 0.01
84 63 0.37
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCC
TACAGGGGTATTTCGA
Found at i:37025612 original size:27 final size:27
Alignment explanation
Indices: 37025336--37025606 Score: 380
Period size: 27 Copynumber: 9.9 Consensus size: 27
37025326 CAGTATCTCA
**
37025336 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCG
*
37025363 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
37025390 GTAATTTTACCCTACAGGGGTATTTTCG
1 GTAATTCTACCCTACAGGGGTA-TTTCG
*
37025418 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
37025445 GTAATTCTATCCTACATGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
37025472 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
37025499 ATAATTCTACCCTACAGAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
37025526 GTAATTCTGTAGGCCTACAGGGGTATTTCG
1 GTAATTC--TA-CCCTACAGGGGTATTTCG
**
37025556 GTAATTCTACCCTACAAAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
37025583 ATAATTCTACCCTACAGGGGTATT
1 GTAATTCTACCCTACAGGGGTATT
37025607 ACGATATTTT
Statistics
Matches: 215, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
27 162 0.75
28 28 0.13
29 2 0.01
30 23 0.11
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:37025695 original size:54 final size:54
Alignment explanation
Indices: 37025612--37025777 Score: 174
Period size: 54 Copynumber: 3.1 Consensus size: 54
37025602 GTATTACGAT
* * * ** *
37025612 ATTTTACAAATC-GAGAGTATTTCGTTAATTTCACAAATTAGGGGTATTTTGGTA
1 ATTTTACAAACCAGAG-GTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTA
* * * *
37025666 ATTTTATAAGCCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTA
1 ATTTTACAAACCAGAGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTA
* ** *
37025720 ATTTTACAAACCAGAGGTATTTTGGTAATTTTACTGATC-GGTGGTATTTTAGTA
1 ATTTTACAAACCAGAGGTATTTTGGTAATTTCACAAACCAGG-GGTATTTTAGTA
37025774 ATTT
1 ATTT
37025778 GGTAAACTAA
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 2 0.02
54 90 0.96
55 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.42
Consensus pattern (54 bp):
ATTTTACAAACCAGAGGTATTTTGGTAATTTCACAAACCAGGGGTATTTTAGTA
Found at i:37025769 original size:27 final size:27
Alignment explanation
Indices: 37025628--37025753 Score: 171
Period size: 27 Copynumber: 4.7 Consensus size: 27
37025618 CAAATCGAGA
* * * **
37025628 GTATTTCGTTAATTTCACAAATTAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
37025655 GTATTTTGGTAATTTTATAAGCCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
37025682 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
37025709 GTATTTTAGTAATTTTACAAACCAGAG
1 GTATTTTGGTAATTTTACAAACCAGGG
37025736 GTATTTTGGTAATTTTAC
1 GTATTTTGGTAATTTTAC
37025754 TGATCGGTGG
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:37025774 original size:27 final size:26
Alignment explanation
Indices: 37025652--37025777 Score: 135
Period size: 27 Copynumber: 4.7 Consensus size: 26
37025642 TCACAAATTA
* * *
37025652 GGGGTATTTTGGTAATTTTATAAGCC
1 GGGGTATTTTAGTAATTTTACAAACC
*
37025678 AGGGGTATTTTGGTAATTTTACAAACC
1 -GGGGTATTTTAGTAATTTTACAAACC
37025705 AGGGGTATTTTAGTAATTTTACAAACC
1 -GGGGTATTTTAGTAATTTTACAAACC
* * ** *
37025732 AGAGGTATTTTGGTAATTTTACTGATC
1 -GGGGTATTTTAGTAATTTTACAAACC
37025759 GGTGGTATTTTAGTAATTT
1 GG-GGTATTTTAGTAATTT
37025778 GGTAAACTAA
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 87 0.99
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (26 bp):
GGGGTATTTTAGTAATTTTACAAACC
Found at i:37035560 original size:46 final size:46
Alignment explanation
Indices: 37035510--37035613 Score: 163
Period size: 46 Copynumber: 2.3 Consensus size: 46
37035500 ATGTGTGCGA
* *
37035510 GTAAGACCACGTTTTATACGATAGTAGCATCGATATGTGATGACAT
1 GTAAGACCACGTTTTATACGACAGTAGCATCAATATGTGATGACAT
* * *
37035556 GTAAGACCACGTTTTGTACGACAGTGGCATCAATATGTGATTACAT
1 GTAAGACCACGTTTTATACGACAGTAGCATCAATATGTGATGACAT
37035602 GTAAGACCACGT
1 GTAAGACCACGT
37035614 CTGGAACGTT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 53 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (46 bp):
GTAAGACCACGTTTTATACGACAGTAGCATCAATATGTGATGACAT
Found at i:37037765 original size:45 final size:45
Alignment explanation
Indices: 37037693--37037855 Score: 217
Period size: 45 Copynumber: 3.7 Consensus size: 45
37037683 GTACAGTAAT
* *
37037693 TTTGAGCCTAGCAGGCTATGATGCCGGTGAGATACTATTCGGGCC
1 TTTGAGCCTAGCAGGCTATAATGCCGGTGAAATACTATTCGGGCC
* *
37037738 TTTGAGCCTAGCAGGCTACAATACCGGTGAAATACTATTCGGGCC
1 TTTGAGCCTAGCAGGCTATAATGCCGGTGAAATACTATTCGGGCC
*
37037783 TTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TATT-GGG-C
1 TTTGAGCCTAGCAGGCTATAATGCCGGTGAAAT-ACTATTCGGGCC
* * *
37037826 TTTAAGCCTAGCAGGCGA-AATGCCAGTGAA
1 TTTGAGCCTAGCAGGCTATAATGCCGGTGAA
37037856 TGAACTCGGG
Statistics
Matches: 106, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
42 11 0.10
43 16 0.15
44 3 0.03
45 75 0.71
46 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (45 bp):
TTTGAGCCTAGCAGGCTATAATGCCGGTGAAATACTATTCGGGCC
Found at i:37037877 original size:41 final size:41
Alignment explanation
Indices: 37037789--37037895 Score: 128
Period size: 41 Copynumber: 2.6 Consensus size: 41
37037779 GGCCTTCGAG
* * *
37037789 CCTAGCAGGCTATAATGCCGGTGAAATGATATTGGGCTTTAAG
1 CCTAGCAGGCTA-AATGCCAGTG-AATGATATCGGGCTTTAAA
*
37037832 CCTAGCAGGCGAAATGCCAGTGAATGA-ACTCGGG-TTTAAAA
1 CCTAGCAGGCTAAATGCCAGTGAATGATA-TCGGGCTTT-AAA
37037873 CCTAGCAGGCTAAATGCCAGTGA
1 CCTAGCAGGCTAAATGCCAGTGA
37037896 TTTGATAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
40 4 0.07
41 33 0.58
42 9 0.16
43 11 0.19
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (41 bp):
CCTAGCAGGCTAAATGCCAGTGAATGATATCGGGCTTTAAA
Found at i:37038403 original size:16 final size:18
Alignment explanation
Indices: 37038372--37038404 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
37038362 AACTCGCCAC
37038372 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
37038390 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
37038405 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:37043126 original size:14 final size:16
Alignment explanation
Indices: 37043078--37043129 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 16
37043068 AATATTTAAT
*
37043078 TATTAATATAAATATAAA
1 TATTAATAT-AAT-TATA
37043096 CTATTAATATAATTATA
1 -TATTAATATAATTATA
37043113 TATT-ATAT-ATTATA
1 TATTAATATAATTATA
37043127 TAT
1 TAT
37043130 AATGATATAG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
14 9 0.28
15 4 0.12
16 4 0.12
17 3 0.09
18 3 0.09
19 9 0.28
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTAATATAATTATA
Found at i:37045060 original size:52 final size:52
Alignment explanation
Indices: 37044998--37045100 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
37044988 TTCTCTAGTC
* *
37044998 AATATGGCGTTAAAATTAACTTTTTTTTAATGAAAATAGATAAGCAATTTAA
1 AATATAGCGTTAAAATTAACTTTTTTTTAATGAAAATAGAGAAGCAATTTAA
*
37045050 AATATAGCGTTAAAATTAACTTTTTTTTAATGAAAATAGCGAAGCAATTTA
1 AATATAGCGTTAAAATTAACTTTTTTTTAATGAAAATAGAGAAGCAATTTA
37045101 CACTTATTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.38
Consensus pattern (52 bp):
AATATAGCGTTAAAATTAACTTTTTTTTAATGAAAATAGAGAAGCAATTTAA
Found at i:37049230 original size:5 final size:5
Alignment explanation
Indices: 37049220--37049298 Score: 140
Period size: 5 Copynumber: 15.4 Consensus size: 5
37049210 ATTCTTTAAT
37049220 TATAA TATAATA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TAT-A-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
37049272 TATAA TATAA TATAA TATAA TATAA TA
1 TATAA TATAA TATAA TATAA TATAA TA
37049299 ATTTTTTCTT
Statistics
Matches: 72, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
5 66 0.92
6 2 0.03
7 4 0.06
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:37050563 original size:26 final size:26
Alignment explanation
Indices: 37050541--37050600 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
37050531 ATCCCGATAT
37050541 ATGGCTCTTCGTGAGCTTTCCGATTA
1 ATGGCTCTTCGTGAGCTTTCCGATTA
** * *
37050567 AAAGCTCTTTGTGAGCTTTCTGATTA
1 ATGGCTCTTCGTGAGCTTTCCGATTA
37050593 ATGGCTCT
1 ATGGCTCT
37050601 CCAGAGTTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.18, C:0.20, G:0.22, T:0.40
Consensus pattern (26 bp):
ATGGCTCTTCGTGAGCTTTCCGATTA
Found at i:37050776 original size:25 final size:25
Alignment explanation
Indices: 37050730--37050783 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
37050720 CTTATGAGCT
* *
37050730 TCCCGTTATACAGCCTAGATAAGCC
1 TCCCATTATACAGCCTACATAAGCC
*
37050755 TCCCATTATACAG-CTCACATAAGCT
1 TCCCATTATACAGCCT-ACATAAGCC
37050780 TCCC
1 TCCC
37050784 GTTTATGTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 2 0.08
25 23 0.92
ACGTcount: A:0.28, C:0.35, G:0.11, T:0.26
Consensus pattern (25 bp):
TCCCATTATACAGCCTACATAAGCC
Found at i:37050967 original size:2 final size:2
Alignment explanation
Indices: 37050960--37050991 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
37050950 TGTTATATGC
37050960 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37050992 GAAAATTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37056382 original size:29 final size:28
Alignment explanation
Indices: 37056344--37056446 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 28
37056334 GTGACGAGAT
* *
37056344 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
37056373 TGGCACTAAGTGTGCGAGCTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
37056402 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
37056431 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37056447 TGATCGATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
28 4 0.06
29 63 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:37064651 original size:29 final size:28
Alignment explanation
Indices: 37064613--37064715 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 28
37064603 GTGACGAGAT
* *
37064613 TGGCACTAAGTGTGCAAGCTTGAAATGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATATA
37064642 TGGCACTAAGTGTGCGAGCTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
37064671 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
37064700 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37064716 TGATCGATTA
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
28 4 0.06
29 63 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:37068626 original size:28 final size:28
Alignment explanation
Indices: 37068561--37068659 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
37068551 CATGAGATTG
* * *
37068561 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
37068590 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
37068618 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
37068646 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
37068660 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:37075865 original size:26 final size:26
Alignment explanation
Indices: 37075842--37075942 Score: 102
Period size: 25 Copynumber: 4.0 Consensus size: 26
37075832 GTCTCGATAT
37075842 ATGGCTCTTCGTGAGCTTCCCGATTA
1 ATGGCTCTTCGTGAGCTTCCCGATTA
* * **
37075868 A-GAGCTCTTTGTGAGCTTTCTAATTA
1 ATG-GCTCTTCGTGAGCTTCCCGATTA
* *
37075894 ATGGCTCTTTG-GAGCTTCCTGATTA
1 ATGGCTCTTCGTGAGCTTCCCGATTA
*
37075919 ATGGCTCTTCG-GAGCTACCC-ATTA
1 ATGGCTCTTCGTGAGCTTCCCGATTA
37075943 TTAGCTCAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
24 4 0.06
25 30 0.47
26 29 0.45
27 1 0.02
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
ATGGCTCTTCGTGAGCTTCCCGATTA
Found at i:37075918 original size:25 final size:26
Alignment explanation
Indices: 37075842--37075934 Score: 111
Period size: 26 Copynumber: 3.7 Consensus size: 26
37075832 GTCTCGATAT
*
37075842 ATGGCTCTTCGTGAGCTTCCCGATTA
1 ATGGCTCTTCGTGAGCTTCCTGATTA
* * *
37075868 A-GAGCTCTTTGTGAGCTTTCTAATTA
1 ATG-GCTCTTCGTGAGCTTCCTGATTA
*
37075894 ATGGCTCTTTG-GAGCTTCCTGATTA
1 ATGGCTCTTCGTGAGCTTCCTGATTA
37075919 ATGGCTCTTCG-GAGCT
1 ATGGCTCTTCGTGAGCT
37075935 ACCCATTATT
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
25 28 0.48
26 29 0.50
27 1 0.02
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.38
Consensus pattern (26 bp):
ATGGCTCTTCGTGAGCTTCCTGATTA
Found at i:37077990 original size:41 final size:41
Alignment explanation
Indices: 37077892--37078099 Score: 191
Period size: 41 Copynumber: 5.1 Consensus size: 41
37077882 TATGTACAAC
* * * * *
37077892 TCAGGGGTACCAAAGTACAAATAGGGGCACATATGCGCAAT
1 TCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATT
* * * *
37077933 CCAGGGATACCGAAGTACAAATAGGGGCACGTATGTGTATT
1 TCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATT
* * * * *** ** *
37077974 TTAGAGGTACCAAAGTACAAACAGAGGTGTGTATGTATAGT
1 TCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATT
* *
37078015 TCAGGGGTACCGATGTACAAACAAGGGCACGTATGTGCATT
1 TCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATT
* * * *
37078056 TTAGGGGTGCCGAAGTATAAACAGGGGCACGTATGTGCAAT
1 TCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATT
37078097 TCA
1 TCA
37078100 TCATTATTAT
Statistics
Matches: 129, Mismatches: 38, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
41 129 1.00
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (41 bp):
TCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCATT
Found at i:37080797 original size:40 final size:40
Alignment explanation
Indices: 37080740--37080879 Score: 120
Period size: 40 Copynumber: 3.5 Consensus size: 40
37080730 ATTGAATGAC
* * *
37080740 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTAT
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACTAT
* * * ***
37080780 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTAT
1 ATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACTAT
* * * ** * *
37080820 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATTCT
1 ATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACTAT
37080860 ATCCGGGCTAAGACCCGAAG
1 ATCCGGGCTAAGACCCGAAG
37080880 GCATTTGTGC
Statistics
Matches: 84, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.04
40 81 0.96
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACTAT
Found at i:37080880 original size:40 final size:39
Alignment explanation
Indices: 37080777--37080903 Score: 148
Period size: 40 Copynumber: 3.2 Consensus size: 39
37080767 TGCTGGAAAT
* * *
37080777 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
37080817 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
37080857 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
37080897 TATATCC
1 TATATCC
37080904 AGTTATATTC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 70 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:37082510 original size:21 final size:21
Alignment explanation
Indices: 37082477--37082534 Score: 89
Period size: 21 Copynumber: 2.7 Consensus size: 21
37082467 ATGTGAGATT
37082477 AAAATTAAATTTTTAAAGAATA
1 AAAATT-AATTTTTAAAGAATA
* *
37082499 AAAATTATTTTTTAAAGAATT
1 AAAATTAATTTTTAAAGAATA
37082520 AAAATTAATTTTTAA
1 AAAATTAATTTTTAA
37082535 TAAAAATAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
21 27 0.82
22 6 0.18
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (21 bp):
AAAATTAATTTTTAAAGAATA
Found at i:37083058 original size:22 final size:22
Alignment explanation
Indices: 37083028--37083071 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
37083018 TAGTAAATGT
*
37083028 GGGATTAAAATTAAATTTTTAA
1 GGGAGTAAAATTAAATTTTTAA
**
37083050 GGGAGTAAAATTATTTTTTTAA
1 GGGAGTAAAATTAAATTTTTAA
37083072 AGAAAATAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (22 bp):
GGGAGTAAAATTAAATTTTTAA
Found at i:37083217 original size:69 final size:68
Alignment explanation
Indices: 37083090--37083218 Score: 168
Period size: 69 Copynumber: 1.9 Consensus size: 68
37083080 GTGAAGTGCA
* * * *
37083090 CTATGAAAGCATTTTCTAATCAATGTAGATTAAAATTAACTTTTTAATAAAAATAATGAAGAAGT
1 CTATGAAAGCATTCTCTAATCAATATAGATTAAAAGTAACTTTTTAATAAAAACAATGAAGAAGT
37083155 GTG
66 GTG
* * * **
37083158 CTATGAGAGTATTCTCTAATCAATATGGGATTAAAAGTAACTTTTTAATGGAAACAATGAA
1 CTATGAAAGCATTCTCTAATCAATAT-AGATTAAAAGTAACTTTTTAATAAAAACAATGAA
37083219 AAAATCCATA
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
68 22 0.43
69 29 0.57
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.34
Consensus pattern (68 bp):
CTATGAAAGCATTCTCTAATCAATATAGATTAAAAGTAACTTTTTAATAAAAACAATGAAGAAGT
GTG
Found at i:37087249 original size:13 final size:13
Alignment explanation
Indices: 37087231--37087255 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37087221 GACTGAGCAT
37087231 CGTGTTAGAGACC
1 CGTGTTAGAGACC
37087244 CGTGTTAGAGAC
1 CGTGTTAGAGAC
37087256 TGTCCACTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (13 bp):
CGTGTTAGAGACC
Found at i:37093844 original size:185 final size:184
Alignment explanation
Indices: 37093527--37093932 Score: 589
Period size: 185 Copynumber: 2.2 Consensus size: 184
37093517 CCAGATATTG
*
37093527 TGTTTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGAAAATGAGCGAAAAAAATGGCAATCGATA
1 TGTTTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGAAAATGAGAGAAAAAAATGGCAATCGATA
* * * * **
37093592 GTGGGGGAAAAACCAATGATTTTAAGATGAAAGTGTGGTGTGGGTTTACAAAAATTACATGAAAG
66 ATGGGGGAAAAAACAATGATTTTAAGATAAAAGTGTGGTGTGGATTTACAAAAATTACACAAAAG
* * * * * *
37093657 CATGATTATAGTCATGGTAATGGAAATTTTTGTAGATGAAATGGGCCAACTATA
131 CATGATTATAATCACGGTAATGGAAATTATTGTAGATGAAATGAGACAACCATA
* * * * *
37093711 TGTTTTGAAGAAGAAAAATAGTGTTCGGCAATAGAGAAAATGAGAGAAAAAAATTGC-AGCTGAT
1 TGTTTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGAAAATGAGAGAAAAAAATGGCAATC-GAT
* *
37093775 AATGGGGTGAAAAAACAATGATTTTAAGCTAAAAGTGTGGTGTGGATTTACAAGAATTACACAAA
65 AATGGGG-GAAAAAACAATGATTTTAAGATAAAAGTGTGGTGTGGATTTACAAAAATTACACAAA
*
37093840 AGCATGATTATAATCACGGTAATGGAAATTATTGTAGATGAAATGAGACAACCATG
129 AGCATGATTATAATCACGGTAATGGAAATTATTGTAGATGAAATGAGACAACCATA
*
37093896 TGTGTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGA
1 TGTTTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGA
37093933 CTATAAGAAT
Statistics
Matches: 195, Mismatches: 25, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
183 2 0.01
184 61 0.31
185 132 0.68
ACGTcount: A:0.41, C:0.07, G:0.26, T:0.26
Consensus pattern (184 bp):
TGTTTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGAAAATGAGAGAAAAAAATGGCAATCGATA
ATGGGGGAAAAAACAATGATTTTAAGATAAAAGTGTGGTGTGGATTTACAAAAATTACACAAAAG
CATGATTATAATCACGGTAATGGAAATTATTGTAGATGAAATGAGACAACCATA
Found at i:37094296 original size:18 final size:20
Alignment explanation
Indices: 37094269--37094318 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
37094259 AAATATAAAA
*
37094269 TTTGAAATTTTTATAAA-TAT
1 TTTG-AATTTTTAAAAATTAT
37094289 TTTG-ATTTTTAAAAATTAT
1 TTTGAATTTTTAAAAATTAT
37094308 TTTGAATTTTT
1 TTTGAATTTTT
37094319 TTTAAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 10 0.37
19 7 0.26
20 10 0.37
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (20 bp):
TTTGAATTTTTAAAAATTAT
Found at i:37094449 original size:7 final size:7
Alignment explanation
Indices: 37094432--37094476 Score: 74
Period size: 7 Copynumber: 6.6 Consensus size: 7
37094422 ATTCAACTCG
37094432 ACTCG-A
1 ACTCGAA
37094438 ACTCGAA
1 ACTCGAA
37094445 ACTCGAA
1 ACTCGAA
37094452 ACTCGAA
1 ACTCGAA
37094459 ACTCGAA
1 ACTCGAA
*
37094466 ACTTGAA
1 ACTCGAA
37094473 ACTC
1 ACTC
37094477 AAATTACTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 5 0.14
7 31 0.86
ACGTcount: A:0.40, C:0.29, G:0.13, T:0.18
Consensus pattern (7 bp):
ACTCGAA
Found at i:37096735 original size:22 final size:22
Alignment explanation
Indices: 37096710--37096754 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
37096700 GTTGAGAGAA
*
37096710 TTATTTAATTTAAA-AAATTAAT
1 TTATCTAA-TTAAACAAATTAAT
*
37096732 TTATCTAATTAAACTAATTAAT
1 TTATCTAATTAAACAAATTAAT
37096754 T
1 T
37096755 AATAATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (22 bp):
TTATCTAATTAAACAAATTAAT
Found at i:37097615 original size:24 final size:26
Alignment explanation
Indices: 37097569--37097617 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
37097559 ATGTTTTAGG
*
37097569 TTATATATGTGAATAAATTTATTTTA
1 TTATATATGTGAATAAATGTATTTTA
*
37097595 TTATATATTTG-ATAAA-GTATTTT
1 TTATATATGTGAATAAATGTATTTT
37097618 TTCCAGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 5 0.24
26 10 0.48
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (26 bp):
TTATATATGTGAATAAATGTATTTTA
Found at i:37114707 original size:25 final size:25
Alignment explanation
Indices: 37114679--37114736 Score: 64
Period size: 29 Copynumber: 2.2 Consensus size: 25
37114669 GGTGTGAGTT
*
37114679 ATATTGATTTGGCTTCGTGCCATGCA
1 ATATTGATTTGGCTTCGGGCCATG-A
37114705 TATCAGTTGATTTGGCTTCGGGCCATG-
1 -AT-A-TTGATTTGGCTTCGGGCCATGA
37114732 ATATT
1 ATATT
37114737 AGTACTTCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
24 2 0.07
25 1 0.04
26 2 0.07
27 2 0.07
28 1 0.04
29 20 0.71
ACGTcount: A:0.19, C:0.17, G:0.24, T:0.40
Consensus pattern (25 bp):
ATATTGATTTGGCTTCGGGCCATGA
Found at i:37119101 original size:27 final size:28
Alignment explanation
Indices: 37119044--37119113 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
37119034 AAATTTGTAC
**
37119044 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
37119072 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
37119099 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37119114 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:37127045 original size:42 final size:42
Alignment explanation
Indices: 37126998--37127104 Score: 205
Period size: 42 Copynumber: 2.5 Consensus size: 42
37126988 TATTGGTCTC
37126998 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
37127040 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
1 GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
*
37127082 GGCACTAAGTGTGCGGGTTTAAA
1 GGCACTAAGTGTGCGGGTATAAA
37127105 ATTTGTGCAG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.22
Consensus pattern (42 bp):
GGCACTAAGTGTGCGGGTATAAATGGACACGGTGACAAGATT
Found at i:37127170 original size:27 final size:28
Alignment explanation
Indices: 37127113--37127182 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
37127103 AAATTTGTGC
**
37127113 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
37127141 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
37127168 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
37127183 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:37129764 original size:67 final size:67
Alignment explanation
Indices: 37129712--37129871 Score: 170
Period size: 68 Copynumber: 2.4 Consensus size: 67
37129702 GTCCTTCACC
37129712 TAGAACCACACATGCGACCTAGCTACAT-AT-A-TCCCGTAGCTCTCTTGTCTACATAGTGTACA
1 TAGAACCACACATGCGACCTAGCTACATCATAAGTCCCGTAGCTCTCTTGTCTACATAGTGTACA
37129774 CA
66 CA
* * * *
37129776 TAGTATCACCCATGCGACCTAGCTACATCATAATGTCTCGTAGCTCTCTTGTAC-ACAT-GATGT
1 TAGAACCACACATGCGACCTAGCTACATCATAA-GTCCCGTAGCTCTCTTGT-CTACATAG-TGT
*
37129839 GCAC-
63 ACACA
* * *
37129843 TCAGCACCATACATGTGACCTAGCTACAT
1 T-AGAACCACACATGCGACCTAGCTACAT
37129872 ACCATCTGTA
Statistics
Matches: 79, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
64 25 0.32
65 2 0.03
66 1 0.01
67 2 0.03
68 48 0.61
69 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (67 bp):
TAGAACCACACATGCGACCTAGCTACATCATAAGTCCCGTAGCTCTCTTGTCTACATAGTGTACA
CA
Found at i:37132373 original size:31 final size:31
Alignment explanation
Indices: 37132322--37132381 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
37132312 GTTTCTTCAT
37132322 ATATATATATATCATCCATTTCAATATATCA
1 ATATATATATATCATCCATTTCAATATATCA
* *
37132353 ATATATCATGTATCAT-CATTTCCATATAT
1 ATATAT-ATATATCATCCATTTCAATATAT
37132382 TTCATGTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 18 0.69
32 8 0.31
ACGTcount: A:0.38, C:0.17, G:0.02, T:0.43
Consensus pattern (31 bp):
ATATATATATATCATCCATTTCAATATATCA
Found at i:37133978 original size:50 final size:50
Alignment explanation
Indices: 37133857--37134139 Score: 275
Period size: 50 Copynumber: 5.6 Consensus size: 50
37133847 ATCTGGTACG
* **
37133857 CATAGTAGCCTGCACTTAGTACTACACATGTGACC-AACAATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAATACA
*
37133906 CGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAATACA
* * * * *** *** *
37133956 CATAGTAGCCTGCACTTCGTACTACACACGTGATCGAAGTTGTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CCATCTAATACA
* * * * *
37134007 CATAGTAGCCTACACTTAGTACTACACATGCGACCTAGCTATCTACTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAATACA
* ** *
37134057 CGTAGTAATCTGCACTTAGTAC-ACACACGTGACCTAAAACCATCTTAA-ACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATC-TAATACA
* *
37134108 CATAGTAGCCTGCACATAGTGCTACACATGTG
1 CATAGTAGCCTGCACTTAGTACTACACATGTG
37134140 TTCTCACAAT
Statistics
Matches: 184, Mismatches: 44, Indels: 9
0.78 0.19 0.04
Matches are distributed among these distances:
49 45 0.24
50 68 0.37
51 61 0.33
52 10 0.05
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAATACA
Found at i:37134089 original size:150 final size:151
Alignment explanation
Indices: 37133851--37134122 Score: 408
Period size: 150 Copynumber: 1.8 Consensus size: 151
37133841 GAAGCTATCT
* * *
37133851 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATCCGATACACGTAGTAGCC
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCCGATACACGTAGTAACC
*
37133916 TGCACTTAGTACTACACATGTGACCT-AACCATC-TAATACACATAGTAGCCTGCACTTCGTACT
66 TGCACTTAGTACTACACACGTGACCTAAACCATCTTAA-ACACATAGTAGCCTGCACTTCGTACT
37133979 ACACACGTGATCGAAGTTGTCG
130 ACACACGTGATCGAAGTTGTCG
* * *
37134001 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAGCTAT-CTACTACACGTAGTAA
1 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC-AACAATCCGA-TACACGTAGTAA
*
37134065 TCTGCACTTAGTAC-ACACACGTGACCTAAAACCATCTTAAACACATAGTAGCCTGCAC
64 CCTGCACTTAGTACTACACACGTGACCT-AAACCATCTTAAACACATAGTAGCCTGCAC
37134123 ATAGTGCTAC
Statistics
Matches: 109, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
150 53 0.49
151 28 0.26
152 25 0.23
153 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAACAATCCGATACACGTAGTAACC
TGCACTTAGTACTACACACGTGACCTAAACCATCTTAAACACATAGTAGCCTGCACTTCGTACTA
CACACGTGATCGAAGTTGTCG
Found at i:37134112 original size:101 final size:101
Alignment explanation
Indices: 37133857--37134137 Score: 280
Period size: 101 Copynumber: 2.8 Consensus size: 101
37133847 ATCTGGTACG
* * * * * *
37133857 CATAGTAGCCTGCACTTAGTACTACACATGTGACC--AACAATCCGATACACGTAGTAGCCTGCA
1 CATAGTAACCTGCACTTAGTACTACACACGTGACCAAAACCATCGGAAACACATAGTAGCCTGCA
*
37133920 CTTAGTACTACACATGTGACCTAACCATCTAATACA
66 CTTAGTACTACACATGCGACCTAACCATCTAATACA
* * * * **** ** * *
37133956 CATAGTAGCCTGCACTTCGTACTACACACGTGATCGAAGTTGTCGGGTACGCATAGTAGCCTACA
1 CATAGTAACCTGCACTTAGTACTACACACGTGACCAAAACCATCGGAAACACATAGTAGCCTGCA
* * *
37134021 CTTAGTACTACACATGCGACCTAGCTATCTACTACA
66 CTTAGTACTACACATGCGACCTAACCATCTAATACA
* * **
37134057 CGTAGTAATCTGCACTTAGTAC-ACACACGTGACCTAAAACCATCTTAAACACATAGTAGCCTGC
1 CATAGTAACCTGCACTTAGTACTACACACGTGACC-AAAACCATCGGAAACACATAGTAGCCTGC
* *
37134121 ACATAGTGCTACACATG
65 ACTTAGTACTACACATG
37134138 TGTTCTCACA
Statistics
Matches: 145, Mismatches: 34, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
99 32 0.22
100 11 0.08
101 102 0.70
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.25
Consensus pattern (101 bp):
CATAGTAACCTGCACTTAGTACTACACACGTGACCAAAACCATCGGAAACACATAGTAGCCTGCA
CTTAGTACTACACATGCGACCTAACCATCTAATACA
Found at i:37143116 original size:18 final size:19
Alignment explanation
Indices: 37143083--37143123 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
37143073 AAGAGAATTT
37143083 AAAATGGCAAAGAAGAGAG
1 AAAATGGCAAAGAAGAGAG
*
37143102 AAAATGG-AGAGAAGAGAG
1 AAAATGGCAAAGAAGAGAG
37143120 AAAA
1 AAAA
37143124 GATGTGAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.61, C:0.02, G:0.32, T:0.05
Consensus pattern (19 bp):
AAAATGGCAAAGAAGAGAG
Found at i:37152357 original size:41 final size:41
Alignment explanation
Indices: 37152300--37152638 Score: 531
Period size: 41 Copynumber: 8.2 Consensus size: 41
37152290 ACATAAAATT
* *
37152300 TGCTAGGC-ATAAAGCCT-AGTACAATACACCGGCACAGAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
*
37152341 TGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
*
37152384 TGCTAGGCAATAAGCCTGATATAATACACTGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
37152425 TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
37152466 TGCTAGGCAATAAGCCTGAT-TAATACACAGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
37152506 TGCTAGGCAATAAGCCTGATTTAAAACGCCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
37152547 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCT
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
37152588 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
37152629 TGCTAGGCAA
1 TGCTAGGCAA
37152639 CAAAGCCCGA
Statistics
Matches: 277, Mismatches: 16, Indels: 10
0.91 0.05 0.03
Matches are distributed among these distances:
40 39 0.14
41 197 0.71
42 3 0.01
43 38 0.14
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:37152558 original size:122 final size:123
Alignment explanation
Indices: 37152300--37152638 Score: 531
Period size: 122 Copynumber: 2.7 Consensus size: 123
37152290 ACATAAAATT
* *
37152300 TGCTAGGC-ATAAAGCCT-AGTACAATACACCGGCACAGAGCCTGCTAGGCAATAAGCCTGATAT
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATAT
* * *
37152363 AATACACCGGCATATAAAGCCTGCTAGGCAATAAGCCTGATATAATACACTGGCACAAAGCC
64 AATACACCGGC--ACAAAGCCTGCTAGGCAATAAGCCTGATATAAAACACCGGCACAAAGCC
*
37152425 TGCTAGGCAATAAGCCTGATTTAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGAT-TAA
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
* * *
37152489 TACACAGGCACAAAGCCTGCTAGGCAATAAGCCTGATTTAAAACGCCGGCACAAAGCC
66 TACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAAAACACCGGCACAAAGCC
*
37152547 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCTTGCTAGGCAATAAGCCTGATATAA
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
37152612 TACACCGGCACAAAGCCTGCTAGGCAA
66 TACACCGGCACAAAGCCTGCTAGGCAA
37152639 CAAAGCCCGA
Statistics
Matches: 199, Mismatches: 12, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
122 103 0.52
123 29 0.15
124 11 0.06
125 53 0.27
126 3 0.02
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (123 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
TACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAAAACACCGGCACAAAGCC
Found at i:37152594 original size:163 final size:164
Alignment explanation
Indices: 37152322--37152638 Score: 537
Period size: 163 Copynumber: 1.9 Consensus size: 164
37152312 AGCCTAGTAC
* * * *
37152322 AATACACCGGCACAGAGCCTGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGCCTGC
1 AATACACAGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAAAACACCGGCA-ACAAAGCCTGC
* *
37152387 TAGGCAATAAGCCTGATATAATACACTGGCACAAAGCCTGCTAGGCAATAAGCCTGATTTAATAC
65 TAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAATAC
37152452 ACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATT
130 ACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATT
* *
37152487 AATACACAGGCACAAAGCCTGCTAGGCAATAAGCCTGATTTAAAACGCCGGC-ACAAAGCCTGCT
1 AATACACAGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAAAACACCGGCAACAAAGCCTGCT
*
37152551 AGGCAATAAGCCTGATATAATACACCGGCACAAAGCTTGCTAGGCAATAAGCCTGATATAATACA
66 AGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAATACA
37152616 CCGGCACAAAGCCTGCTAGGCAA
131 CCGGCACAAAGCCTGCTAGGCAA
37152639 CAAAGCCCGA
Statistics
Matches: 143, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
163 96 0.67
165 47 0.33
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.18
Consensus pattern (164 bp):
AATACACAGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAAAACACCGGCAACAAAGCCTGCT
AGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATATAATACA
CCGGCACAAAGCCTGCTAGGCAATAAGCCTGATT
Found at i:37160928 original size:25 final size:26
Alignment explanation
Indices: 37160899--37160958 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
37160889 TTAATTAATA
37160899 TAAAATATTA-ATAATTCAAT-AAAT
1 TAAAATATTAGATAATTCAATAAAAT
*
37160923 TGAAAA-ATTAGATAATTGAATAAAAT
1 T-AAAATATTAGATAATTCAATAAAAT
37160949 TAAAAT-TTAG
1 TAAAATATTAG
37160959 GAGAAAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
24 5 0.16
25 21 0.68
26 5 0.16
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.35
Consensus pattern (26 bp):
TAAAATATTAGATAATTCAATAAAAT
Found at i:37161808 original size:30 final size:30
Alignment explanation
Indices: 37161750--37161808 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
37161740 GTCTTCTGAA
* * *
37161750 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGACAACCAATTTTT
37161780 AATATTTACAAAAAGA-ACAACCACATTTT
1 AATATTTACAAAAAGAGACAACCA-ATTTT
37161809 GAAAATTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACCAATTTTT
Found at i:37163623 original size:43 final size:43
Alignment explanation
Indices: 37163511--37163694 Score: 210
Period size: 43 Copynumber: 4.3 Consensus size: 43
37163501 TTATGTAAAA
* * * *
37163511 AAACGCCGCTAAAGAACGTGACTTTTAGCAGCGCTTTCAAG-A-
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCACTTTC-TGTAC
* * *
37163553 AAATGCCGCTAAAGAATGTGACTTTTAGCGGCACTTTCTGTAC
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCACTTTCTGTAC
* * *
37163596 AAACGCTGCTAAAGAACGTGGCCTTTAGCGACACTTTCTGTAC
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCACTTTCTGTAC
* * * * *
37163639 AAACGCCGCTAAAGAACGTGGCCTTTAGCGGCGCTTTTTATGC
1 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCACTTTCTGTAC
37163682 AAACGCCGCTAAA
1 AAACGCCGCTAAA
37163695 TGTATGTTCT
Statistics
Matches: 123, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
41 1 0.01
42 35 0.28
43 87 0.71
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACGTGACCTTTAGCGGCACTTTCTGTAC
Found at i:37163841 original size:47 final size:47
Alignment explanation
Indices: 37163787--37163880 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
37163777 AATTCTTCTT
* *
37163787 GCAACATCAAATCCAACCAATAATAGCAAATCTAAATGATACTTCAA
1 GCAACATCAAATCCAACCAATAACAGCAAATCTAAATGACACTTCAA
37163834 GCAACATCAAATCCAACCAATAACAGCAAATCTAAATGACACTTCAA
1 GCAACATCAAATCCAACCAATAACAGCAAATCTAAATGACACTTCAA
37163881 AAATTCAACG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.49, C:0.26, G:0.06, T:0.19
Consensus pattern (47 bp):
GCAACATCAAATCCAACCAATAACAGCAAATCTAAATGACACTTCAA
Found at i:37164107 original size:21 final size:21
Alignment explanation
Indices: 37164083--37164122 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
37164073 CTTCCCTCGC
*
37164083 TGCTGCCTCCTCTTTAAGTGA
1 TGCTGCCTCCGCTTTAAGTGA
37164104 TGCTGCCTCCGCTTTAAGT
1 TGCTGCCTCCGCTTTAAGT
37164123 TGAGCAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.30, G:0.20, T:0.38
Consensus pattern (21 bp):
TGCTGCCTCCGCTTTAAGTGA
Found at i:37164523 original size:3 final size:3
Alignment explanation
Indices: 37164515--37164542 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
37164505 TGTTTATGAA
37164515 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
37164543 GTAATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:37166926 original size:24 final size:25
Alignment explanation
Indices: 37166850--37166919 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
37166840 GAGGAAGTGT
* * *
37166850 AAAAGGGCTATGCCCTAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
37166875 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
37166900 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
37166920 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:37167202 original size:31 final size:31
Alignment explanation
Indices: 37167141--37167249 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
37167131 CGTTTACAGT
*
37167141 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGACATGAATAATGA
*
37167171 AAAGGCTTCGGCCCAGAGACATGAATAATGA
1 AAAGGCTTCGGCCCAGTGACATGAATAATGA
*
37167202 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATGAATAATGA
37167233 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
37167250 ATATGTTGAG
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 21 0.28
31 53 0.72
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGACATGAATAATGA
Found at i:37169323 original size:3 final size:3
Alignment explanation
Indices: 37169315--37169348 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
37169305 TGTTTATGAA
*
37169315 ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
37169349 GTAATTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:37171541 original size:25 final size:25
Alignment explanation
Indices: 37171512--37171559 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37171502 TTATAATATG
** *
37171512 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
37171537 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
37171560 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:37171715 original size:24 final size:25
Alignment explanation
Indices: 37171688--37171757 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
37171678 GAGGAAGTGT
37171688 AAAAGGGCTATGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTATCA
* *
37171713 AAAAGGGCTTTGCCCCAG-TTAT-T
1 AAAAGGGCTATGCCCCAGTTTATCA
*
37171736 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
37171758 ATATGATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
23 5 0.13
24 11 0.29
25 21 0.55
26 1 0.03
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATCA
Found at i:37172015 original size:31 final size:31
Alignment explanation
Indices: 37171954--37172062 Score: 148
Period size: 31 Copynumber: 3.5 Consensus size: 31
37171944 CGTTTACAGT
* * *
37171954 AAAGGCTTCGACCCAATGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGACATGAATAATGA
**
37171984 AAAGGCTTCGGCTTAGTGACATGAATAATGA
1 AAAGGCTTCGGCCCAGTGACATGAATAATGA
* *
37172015 AAGGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGACATGAATAATGA
37172046 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
37172063 ATATGTTGAG
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
30 18 0.26
31 50 0.74
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGACATGAATAATGA
Found at i:37173603 original size:17 final size:17
Alignment explanation
Indices: 37173564--37173602 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
37173554 TCTTTAAAGT
37173564 ACTTTTATGGTCTCTCC
1 ACTTTTATGGTCTCTCC
37173581 ACTTTTATGGTCTCTCC
1 ACTTTTATGGTCTCTCC
37173598 A-TTTT
1 ACTTTT
37173603 TTTCCAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.13, C:0.26, G:0.10, T:0.51
Consensus pattern (17 bp):
ACTTTTATGGTCTCTCC
Found at i:37181301 original size:38 final size:38
Alignment explanation
Indices: 37181250--37181325 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
37181240 AAGCTCTTAC
37181250 TTAGAGGAGGAATAGACCCTGTTTAAGAGAACATTTGT
1 TTAGAGGAGGAATAGACCCTGTTTAAGAGAACATTTGT
37181288 TTAGAGGAGGAATAGACCCTGTTTAAGAGAACATTTGT
1 TTAGAGGAGGAATAGACCCTGTTTAAGAGAACATTTGT
37181326 CATAATTAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (38 bp):
TTAGAGGAGGAATAGACCCTGTTTAAGAGAACATTTGT
Found at i:37183864 original size:12 final size:12
Alignment explanation
Indices: 37183849--37183874 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37183839 ATCATCCTCT
37183849 TCATCAGATTCA
1 TCATCAGATTCA
37183861 TCATCAGATTCA
1 TCATCAGATTCA
37183873 TC
1 TC
37183875 CCTCGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:37185709 original size:9 final size:9
Alignment explanation
Indices: 37185691--37185846 Score: 83
Period size: 9 Copynumber: 17.6 Consensus size: 9
37185681 TATTTATGTA
37185691 TTATGTAAG
1 TTATGTAAG
*
37185700 TTAAGTAAG
1 TTATGTAAG
*
37185709 TTTTGTAAG
1 TTATGTAAG
37185718 TTATGTAAG
1 TTATGTAAG
*
37185727 ATATG--A-
1 TTATGTAAG
37185733 -TATGATAA-
1 TTATG-TAAG
* *
37185741 ATATTTAAG
1 TTATGTAAG
37185750 TATTATGTAAG
1 --TTATGTAAG
37185761 TTATGTAAG
1 TTATGTAAG
*
37185770 TTATGATATG
1 TTATG-TAAG
* ** *
37185780 ATACAT-AT
1 TTATGTAAG
37185788 TTATGTAAG
1 TTATGTAAG
*
37185797 TCATGTAAG
1 TTATGTAAG
*
37185806 TTATGATATG
1 TTATG-TAAG
* * *
37185816 ATATAT-AT
1 TTATGTAAG
37185824 TTATGTAAG
1 TTATGTAAG
37185833 TTATGTAAG
1 TTATGTAAG
37185842 TTATG
1 TTATG
37185847 ATATGATATA
Statistics
Matches: 108, Mismatches: 28, Indels: 22
0.68 0.18 0.14
Matches are distributed among these distances:
5 4 0.04
7 1 0.01
8 11 0.10
9 74 0.69
10 11 0.10
11 7 0.06
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.44
Consensus pattern (9 bp):
TTATGTAAG
Found at i:37185763 original size:43 final size:41
Alignment explanation
Indices: 37185705--37185861 Score: 165
Period size: 36 Copynumber: 4.0 Consensus size: 41
37185695 GTAAGTTAAG
37185705 TAAGTTT-TGTAAGTTATGTAAGATATGATATGATAAATATT
1 TAAGTTTATGTAAGTTATGTAAGATATGATATGAT-AATATT
* *
37185746 TAAGTATTATGTAAGTTATGTAAGTTATGATATGAT-ACA--
1 TAAGT-TTATGTAAGTTATGTAAGATATGATATGATAATATT
* *
37185785 T-A-TTTATGTAAGTCATGTAAGTTATGATATGAT-ATA--
1 TAAGTTTATGTAAGTTATGTAAGATATGATATGATAATATT
*
37185821 T-A-TTTATGTAAGTTATGTAAGTTATGATATGATATATATT
1 TAAGTTTATGTAAGTTATGTAAGATATGATATGATA-ATATT
37185861 T
1 T
37185862 TTATTATTTT
Statistics
Matches: 105, Mismatches: 5, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
36 63 0.60
37 1 0.01
38 4 0.04
39 1 0.01
40 1 0.01
41 7 0.07
42 2 0.02
43 26 0.25
ACGTcount: A:0.37, C:0.01, G:0.17, T:0.45
Consensus pattern (41 bp):
TAAGTTTATGTAAGTTATGTAAGATATGATATGATAATATT
Found at i:37185794 original size:36 final size:36
Alignment explanation
Indices: 37185752--37185861 Score: 202
Period size: 36 Copynumber: 3.1 Consensus size: 36
37185742 TATTTAAGTA
*
37185752 TTATGTAAGTTATGTAAGTTATGATATGATACATAT
1 TTATGTAAGTTATGTAAGTTATGATATGATATATAT
*
37185788 TTATGTAAGTCATGTAAGTTATGATATGATATATAT
1 TTATGTAAGTTATGTAAGTTATGATATGATATATAT
37185824 TTATGTAAGTTATGTAAGTTATGATATGATATATAT
1 TTATGTAAGTTATGTAAGTTATGATATGATATATAT
37185860 TT
1 TT
37185862 TTATTATTTT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 71 1.00
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.46
Consensus pattern (36 bp):
TTATGTAAGTTATGTAAGTTATGATATGATATATAT
Found at i:37193698 original size:23 final size:23
Alignment explanation
Indices: 37193659--37193829 Score: 123
Period size: 23 Copynumber: 7.4 Consensus size: 23
37193649 AGTTGATGGA
* * *
37193659 CAGTAAGCTCTATTGAGCAGAAT
1 CAGTAAGCTCCAATGAGCTGAAT
* * *
37193682 CGGTAAGCTCCAATGAGCTAAAA
1 CAGTAAGCTCCAATGAGCTGAAT
*
37193705 CAGTAAACTCC-ATCGAGCTGAAT
1 CAGTAAGCTCCAAT-GAGCTGAAT
** *
37193728 TGGTAAGCTCCGATGAGCTGAAAT
1 CAGTAAGCTCCAATGAGCTG-AAT
* *
37193752 -AGTAAGCT-CTATCAAGCTGAAT
1 CAGTAAGCTCCAAT-GAGCTGAAT
** * *
37193774 TGGTAAGCTGCAATGAGCTGAAA
1 CAGTAAGCTCCAATGAGCTGAAT
** *
37193797 CAGTAAGCTCTTACGAGCTGAAT
1 CAGTAAGCTCCAATGAGCTGAAT
37193820 CAGTAAGCTC
1 CAGTAAGCTC
37193830 ATACAAGCTG
Statistics
Matches: 115, Mismatches: 27, Indels: 12
0.75 0.18 0.08
Matches are distributed among these distances:
22 8 0.07
23 99 0.86
24 8 0.07
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (23 bp):
CAGTAAGCTCCAATGAGCTGAAT
Found at i:37193733 original size:46 final size:46
Alignment explanation
Indices: 37193658--37193829 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
37193648 AAGTTGATGG
* * * *
37193658 ACAGTAAGCTCTATTGAGCAGAATCGGTAAGCTCCAATGAGCTAAA
1 ACAGTAAGCTCCATCGAGCTGAATCGGTAAGCTCCAATGAGCTGAA
* * *
37193704 ACAGTAAACTCCATCGAGCTGAATTGGTAAGCTCCGATGAGCTGAA
1 ACAGTAAGCTCCATCGAGCTGAATCGGTAAGCTCCAATGAGCTGAA
* * * * *
37193750 ATAGTAAGCTCTATCAAGCTGAATTGGTAAGCTGCAATGAGCTGAA
1 ACAGTAAGCTCCATCGAGCTGAATCGGTAAGCTCCAATGAGCTGAA
* *
37193796 ACAGTAAGCT-CTTACGAGCTGAATCAGTAAGCTC
1 ACAGTAAGCTCCAT-CGAGCTGAATCGGTAAGCTC
37193830 ATACAAGCTG
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
45 1 0.01
46 104 0.99
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (46 bp):
ACAGTAAGCTCCATCGAGCTGAATCGGTAAGCTCCAATGAGCTGAA
Found at i:37193817 original size:92 final size:92
Alignment explanation
Indices: 37193660--37193829 Score: 234
Period size: 92 Copynumber: 1.8 Consensus size: 92
37193650 GTTGATGGAC
**
37193660 AGTAAGCTCTATTGAGCAGAATCGGTAAGCTCCAATGAGCTAAAACAGTAAACTCCATCGAGCTG
1 AGTAAGCTCTATCAAGCAGAATCGGTAAGCTCCAATGAGCTAAAACAGTAAACTCCATCGAGCTG
**
37193725 AATTGGTAAGCTCCGATGAGCTGAAAT
66 AATCAGTAAGCTCCGATGAGCTGAAAT
* * * * * *
37193752 AGTAAGCTCTATCAAGCTGAATTGGTAAGCTGCAATGAGCTGAAACAGTAAGCT-CTTACGAGCT
1 AGTAAGCTCTATCAAGCAGAATCGGTAAGCTCCAATGAGCTAAAACAGTAAACTCCAT-CGAGCT
37193816 GAATCAGTAAGCTC
65 GAATCAGTAAGCTC
37193830 ATACAAGCTG
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
91 2 0.03
92 65 0.97
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (92 bp):
AGTAAGCTCTATCAAGCAGAATCGGTAAGCTCCAATGAGCTAAAACAGTAAACTCCATCGAGCTG
AATCAGTAAGCTCCGATGAGCTGAAAT
Found at i:37193838 original size:23 final size:23
Alignment explanation
Indices: 37193743--37193839 Score: 83
Period size: 23 Copynumber: 4.2 Consensus size: 23
37193733 AGCTCCGATG
37193743 AGCTGAAAT-AGTAAGCTC-TATCA
1 AGCTG-AATCAGTAAGCTCATA-CA
** **
37193766 AGCTGAATTGGTAAGCTGCA-ATG
1 AGCTGAATCAGTAAGCT-CATACA
* * *
37193789 AGCTGAAACAGTAAGCTCTTACG
1 AGCTGAATCAGTAAGCTCATACA
37193812 AGCTGAATCAGTAAGCTCATACA
1 AGCTGAATCAGTAAGCTCATACA
37193835 AGCTG
1 AGCTG
37193840 TGGTGAGTCC
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
22 4 0.07
23 53 0.90
24 2 0.03
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.24
Consensus pattern (23 bp):
AGCTGAATCAGTAAGCTCATACA
Done.