Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 126 of 425
Found at i:37682104 original size:79 final size:79
Alignment explanation
Indices: 37681988--37682140 Score: 245
Period size: 79 Copynumber: 1.9 Consensus size: 79
37681978 GTGCGAATTG
* * *
37681988 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGATAAACCCGAAGGCAATTATGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
37682052 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
*
37682066 TGATATCCGGGATAAACTCCGAAGGCAATTATGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGG
1 TGATATCCGGGATAAAC-CCGAAGGCAATTATGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGG
*
37682131 CATTTGTGCG
65 CAATTGTGCG
37682141 GGTTATCATA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
78 15 0.22
79 36 0.53
80 17 0.25
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGATAAACCCGAAGGCAATTATGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:37682183 original size:80 final size:79
Alignment explanation
Indices: 37682005--37682156 Score: 232
Period size: 79 Copynumber: 1.9 Consensus size: 79
37681995 CGGGCTAAGC
* *
37682005 CCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATGAT
1 CCGAAGGCAATTATGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATCAT
*
37682070 ATCCGGGATAAACT
66 AACCGGGATAAACT
* * * *
37682084 CCGAAGGCAATTATGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTATCA
1 CCGAAGGCAATTATGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGCTATCA
37682149 TAACCGGG
65 TAACCGGG
37682157 CTATGTCCCG
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 36 0.55
80 29 0.45
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTATGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTATCAT
AACCGGGATAAACT
Found at i:37687608 original size:20 final size:21
Alignment explanation
Indices: 37687583--37687621 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
37687573 ACCCATTAGC
37687583 TTGTACAAAAATTG-TAATGG
1 TTGTACAAAAATTGCTAATGG
*
37687603 TTGTACCAAAATTGCTAAT
1 TTGTACAAAAATTGCTAAT
37687622 CGATATTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (21 bp):
TTGTACAAAAATTGCTAATGG
Found at i:37687802 original size:19 final size:19
Alignment explanation
Indices: 37687780--37687848 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
37687770 ATGAGTTAAA
**
37687780 AAATTTGGTATCGTGTTAG
1 AAATTTGGTATCGCATTAG
37687799 AAATATTGGTATC-CATTAG
1 AAAT-TTGGTATCGCATTAG
** *
37687818 AAATTTAATATCACATTAG
1 AAATTTGGTATCGCATTAG
37687837 AAATTTTGGTAT
1 AAA-TTTGGTAT
37687849 TGGTTAGAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
18 6 0.15
19 21 0.51
20 14 0.34
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (19 bp):
AAATTTGGTATCGCATTAG
Found at i:37687880 original size:26 final size:26
Alignment explanation
Indices: 37687832--37687885 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
37687822 TTAATATCAC
* ***
37687832 ATTAGAAATTTTGGTATTGGTTAGAA
1 ATTAGAAATTTTGATAACAGTTAGAA
*
37687858 ATTAGAAATTTTGATAACAGTTATAA
1 ATTAGAAATTTTGATAACAGTTAGAA
37687884 AT
1 AT
37687886 ATTGGTATCG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.41
Consensus pattern (26 bp):
ATTAGAAATTTTGATAACAGTTAGAA
Found at i:37688293 original size:14 final size:13
Alignment explanation
Indices: 37688274--37688307 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
37688264 AATATAAAAA
*
37688274 ATAAAATTTATAT
1 ATAAAAATTATAT
37688287 ATGAAAAATTATAT
1 AT-AAAAATTATAT
37688301 ATAAAAA
1 ATAAAAA
37688308 CGTAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (13 bp):
ATAAAAATTATAT
Found at i:37688377 original size:17 final size:17
Alignment explanation
Indices: 37688324--37688381 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
37688314 AATATGTTTG
*
37688324 AAATTTTTAAATTTGTAAA
1 AAATTTATAAA-TTGT-AA
* * * *
37688343 AAATTAAAAAACTATAA
1 AAATTTATAAATTGTAA
37688360 AAATTTATAAATTGTAA
1 AAATTTATAAATTGTAA
37688377 AAATT
1 AAATT
37688382 ATAGTAGATT
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
17 20 0.67
18 2 0.07
19 8 0.27
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (17 bp):
AAATTTATAAATTGTAA
Found at i:37690631 original size:13 final size:13
Alignment explanation
Indices: 37690613--37690637 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37690603 TTGATTGAGG
37690613 TTTTTATTTTTTA
1 TTTTTATTTTTTA
37690626 TTTTTATTTTTT
1 TTTTTATTTTTT
37690638 TTTCTTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:37699299 original size:35 final size:35
Alignment explanation
Indices: 37699244--37699310 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
37699234 TGGCAAATAA
*
37699244 CCTAAAATTTGTCCATACGGGTAGACACACGATAG
1 CCTAAAATTTGTCCACACGGGTAGACACACGATAG
* *
37699279 CCTAAAATTTTTCCACACGGGTAGACAGACGA
1 CCTAAAATTTGTCCACACGGGTAGACACACGA
37699311 GCGTGTGTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.22
Consensus pattern (35 bp):
CCTAAAATTTGTCCACACGGGTAGACACACGATAG
Found at i:37699666 original size:20 final size:20
Alignment explanation
Indices: 37699620--37699671 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
37699610 CGGGCTGAGG
*
37699620 ACACGGGCGTGTCCCAAGTC
1 ACACGGGCGTGTCCCAAGCC
*
37699640 ACGCGGGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAAGCC
* *
37699660 ATACGGGTGTGT
1 ACACGGGCGTGT
37699672 GTAGCCACAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.17, C:0.31, G:0.35, T:0.17
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAGCC
Found at i:37713281 original size:39 final size:40
Alignment explanation
Indices: 37713222--37713437 Score: 248
Period size: 39 Copynumber: 5.5 Consensus size: 40
37713212 CGGATGTAAC
*
37713222 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
37713262 AACC-GCACGAATACCTTCGGGACTTAACCCGGTTAT-AT
1 AACCAGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
*
37713300 AACCTGCACGAATACCTTCGGGA-TTAACCCGGTTATAAT
1 AACCAGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
* *
37713339 AACC--CGCGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
* * ** * *
37713377 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGT
1 AACCAGCACGAA-TACCTTCGGGA-CTTAACCCGGTTATAAT
* * *
37713417 AACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATACCTTCGG
37713438 ATCTTAGTCC
Statistics
Matches: 158, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
37 15 0.09
38 38 0.24
39 60 0.38
40 42 0.27
41 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (40 bp):
AACCAGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
Found at i:37713327 original size:38 final size:39
Alignment explanation
Indices: 37713222--37713379 Score: 250
Period size: 39 Copynumber: 4.1 Consensus size: 39
37713212 CGGATGTAAC
*
37713222 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACC-GCACGAATACCTTCGGGACTTAACCCGGTTATAAT
37713262 AACCGCACGAATACCTTCGGGACTTAACCCGGTTAT-AT
1 AACCGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
37713300 AACCTGCACGAATACCTTCGGGA-TTAACCCGGTTATAAT
1 AACC-GCACGAATACCTTCGGGACTTAACCCGGTTATAAT
* *
37713339 AACC-CGCGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
37713377 AAC
1 AAC
37713380 TAGCACAATT
Statistics
Matches: 112, Mismatches: 3, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
37 15 0.13
38 38 0.34
39 55 0.49
40 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (39 bp):
AACCGCACGAATACCTTCGGGACTTAACCCGGTTATAAT
Found at i:37713420 original size:40 final size:40
Alignment explanation
Indices: 37713347--37713453 Score: 153
Period size: 40 Copynumber: 2.7 Consensus size: 40
37713337 ATAACCCGCG
** *
37713347 AATGCCTTCGGGA-CTTAACCCGGTTATAATAACTAGCACA
1 AATGCCTTC-GGATCTTAGTCCGGATATAATAACTAGCACA
* *
37713387 ATTGCCTTCGGATCTTAGTCCGGATATAGTAACTAGCACA
1 AATGCCTTCGGATCTTAGTCCGGATATAATAACTAGCACA
37713427 AATGCCTTCGGATCTTAGTCCGGATAT
1 AATGCCTTCGGATCTTAGTCCGGATAT
37713454 CATCCGAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 3 0.05
40 57 0.95
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (40 bp):
AATGCCTTCGGATCTTAGTCCGGATATAATAACTAGCACA
Found at i:37721532 original size:78 final size:77
Alignment explanation
Indices: 37721394--37721557 Score: 251
Period size: 78 Copynumber: 2.1 Consensus size: 77
37721384 CGGATGTAAC
*
37721394 AACCAGCACGAATGCCTTCGGGACTTAACCGGTTATAATAACCCACGAATACCTTCGGGACTTAA
1 AACCAGCACGAATACCTTCGGGACTTAACCGGTTATAATAACCCACGAATACCTTCGGGACTTAA
37721459 CCCGGTTATAAT
66 CCCGGTTATAAT
* *
37721471 AACCCGCACGAATACCTT-GGGA-TTAACCCGGTTATAATAACCCGTACGAATGCCTTCGGGACT
1 AACCAGCACGAATACCTTCGGGACTTAA-CCGGTTATAATAACCC--ACGAATACCTTCGGGACT
37721534 TAACCCGGTTATAAT
63 TAACCCGGTTATAAT
*
37721549 AACTAGCAC
1 AACCAGCAC
37721558 AATTGCCTTC
Statistics
Matches: 79, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
75 4 0.05
76 20 0.25
77 16 0.20
78 39 0.49
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (77 bp):
AACCAGCACGAATACCTTCGGGACTTAACCGGTTATAATAACCCACGAATACCTTCGGGACTTAA
CCCGGTTATAAT
Found at i:37721548 original size:40 final size:39
Alignment explanation
Indices: 37721401--37721551 Score: 238
Period size: 38 Copynumber: 3.9 Consensus size: 39
37721391 AACAACCAGC
*
37721401 ACGAATGCCTTCGGGACTTAA-CCGGTTATAATAACCC-
1 ACGAATACCTTCGGGACTTAACCCGGTTATAATAACCCG
37721438 ACGAATACCTTCGGGACTTAACCCGGTTATAATAACCCG
1 ACGAATACCTTCGGGACTTAACCCGGTTATAATAACCCG
37721477 CACGAATACCTT-GGGA-TTAACCCGGTTATAATAACCCG
1 -ACGAATACCTTCGGGACTTAACCCGGTTATAATAACCCG
*
37721515 TACGAATGCCTTCGGGACTTAACCCGGTTATAATAAC
1 -ACGAATACCTTCGGGACTTAACCCGGTTATAATAAC
37721552 TAGCACAATT
Statistics
Matches: 106, Mismatches: 3, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
37 20 0.19
38 48 0.45
39 8 0.08
40 30 0.28
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (39 bp):
ACGAATACCTTCGGGACTTAACCCGGTTATAATAACCCG
Found at i:37721565 original size:40 final size:40
Alignment explanation
Indices: 37721394--37721609 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
37721384 CGGATGTAAC
37721394 AACCAGCACGAATGCCTTCGGGACTTAA-CCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
37721433 AACC--CACGAATACCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
37721471 AACCCGCACGAATACCTT-GGGA-TTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
37721509 AACCCGTACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* ** * *
37721549 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGT
1 AACCAGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAAT
* *
37721589 AACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATGCCTTCGG
37721610 ATCTTAGTGG
Statistics
Matches: 158, Mismatches: 10, Indels: 16
0.86 0.05 0.09
Matches are distributed among these distances:
37 21 0.13
38 47 0.30
39 17 0.11
40 70 0.44
41 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:37729568 original size:40 final size:40
Alignment explanation
Indices: 37729524--37729679 Score: 267
Period size: 40 Copynumber: 3.9 Consensus size: 40
37729514 AACAACCAGT
* *
37729524 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCCAC
1 ACGAATACCTTCGGGACTTAACCCGGTTATAATAACCCGC
*
37729564 ACGAATACCTTCGGGACTTAACCCAGTTATAATAACCCGC
1 ACGAATACCTTCGGGACTTAACCCGGTTATAATAACCCGC
*
37729604 ACGAATACCTTCGGGATTTAACCCGGTTATAATAACCCGC
1 ACGAATACCTTCGGGACTTAACCCGGTTATAATAACCCGC
*
37729644 ACGAATGCCTTCGGGACTTAACCCGGTTATAATAAC
1 ACGAATACCTTCGGGACTTAACCCGGTTATAATAAC
37729680 TAGCACAATT
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 109 1.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (40 bp):
ACGAATACCTTCGGGACTTAACCCGGTTATAATAACCCGC
Found at i:37729693 original size:40 final size:40
Alignment explanation
Indices: 37729517--37729737 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
37729507 CGGATGTAAC
*
37729517 AACCAGTACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
37729557 AACCCA-CACGAATACCTTCGGGACTTAACCCAGTTATAAT
1 AA-CCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
37729597 AACCCGCACGAATACCTTCGGGATTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
37729637 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* ** * *
37729677 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGT
1 AACCAGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAAT
** *
37729717 AACTGGCACAAATGCCTTCGG
1 AACCAGCACGAATGCCTTCGG
37729738 ATCTTAGTCT
Statistics
Matches: 160, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 7 0.04
40 147 0.92
41 6 0.04
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:37740788 original size:23 final size:23
Alignment explanation
Indices: 37740762--37740807 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
37740752 TACGACAAGA
*
37740762 TAAAATTATTGTGTGAAAATTTC
1 TAAAATGATTGTGTGAAAATTTC
37740785 TAAAATGATTGTGTGAAAATTTC
1 TAAAATGATTGTGTGAAAATTTC
37740808 GTTAAGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.04, G:0.15, T:0.41
Consensus pattern (23 bp):
TAAAATGATTGTGTGAAAATTTC
Found at i:37746085 original size:27 final size:27
Alignment explanation
Indices: 37745944--37746086 Score: 94
Period size: 27 Copynumber: 5.3 Consensus size: 27
37745934 CTTAATTTTC
* * *
37745944 AAAATTACCAAAATACCCCTGGT-TTGT
1 AAAATGACCGAAATACCCCT-GTATAGT
* * **
37745971 AAAATGACCGTAATGCCCCTGTAGGGT
1 AAAATGACCGAAATACCCCTGTATAGT
37745998 AAAATGACCGAAATA-CCCT-TATAGTGT
1 AAAATGACCGAAATACCCCTGTATA--GT
* ** * * *
37746025 AAAATTATTGAAATACCCTTGTAGAGC
1 AAAATGACCGAAATACCCCTGTATAGT
* *
37746052 GAAATGACCGTAATACCCCTGTATAGT
1 AAAATGACCGAAATACCCCTGTATAGT
*
37746079 AACATGAC
1 AAAATGAC
37746087 GATTATGCCC
Statistics
Matches: 85, Mismatches: 26, Indels: 10
0.70 0.21 0.08
Matches are distributed among these distances:
25 2 0.02
26 6 0.07
27 71 0.84
28 3 0.04
29 3 0.04
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (27 bp):
AAAATGACCGAAATACCCCTGTATAGT
Found at i:37746500 original size:33 final size:34
Alignment explanation
Indices: 37746458--37746528 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
37746448 TTAGGCCCAC
* * *
37746458 ACTGTTACTGTATAGGGCTAAGGACCAGGCTG-T
1 ACTGATACTGAATAGGGCTAAGGACCAGACTGTT
* *
37746491 ACTGATACTGAATAGGGCTCAGGCCCAGACTGTT
1 ACTGATACTGAATAGGGCTAAGGACCAGACTGTT
37746525 ACTG
1 ACTG
37746529 CATGCACTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
33 27 0.84
34 5 0.16
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (34 bp):
ACTGATACTGAATAGGGCTAAGGACCAGACTGTT
Found at i:37751402 original size:50 final size:50
Alignment explanation
Indices: 37751327--37751426 Score: 146
Period size: 50 Copynumber: 2.0 Consensus size: 50
37751317 CGTCTTACTC
* ** * *
37751327 GCACACATATATCGGAGTCACATATCGATGTGAACGTATAAAATGTGGTT
1 GCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACGTGGTT
*
37751377 GCACACATATATCGAAGTCATATATCGATGCCAACATATAAAACGTGGTT
1 GCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACGTGGTT
37751427 TTACTCGCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (50 bp):
GCACACATATATCGAAGTCACATATCGATGCCAACATATAAAACGTGGTT
Found at i:37752624 original size:14 final size:15
Alignment explanation
Indices: 37752607--37752635 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
37752597 GCACGAAAAT
37752607 TTCACACA-AATAAA
1 TTCACACATAATAAA
37752621 TTCACACATAATAAA
1 TTCACACATAATAAA
37752636 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:37758648 original size:47 final size:47
Alignment explanation
Indices: 37758576--37758695 Score: 204
Period size: 47 Copynumber: 2.6 Consensus size: 47
37758566 CGCCCATAAG
* * *
37758576 CGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTTACATTTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
37758623 CGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
1 CGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
*
37758670 CGAACTTAGACTCAACTCAACGAGTT
1 CGAACTCAGACTCAACTCAACGAGTT
37758696 TGGACGTTCG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (47 bp):
CGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:37761055 original size:15 final size:15
Alignment explanation
Indices: 37761007--37761073 Score: 64
Period size: 15 Copynumber: 4.5 Consensus size: 15
37760997 TAAAGATAAC
*
37761007 AAGAAAACC-AAATA
1 AAGAAACCCAAAATA
* * *
37761021 AAGAAATCCAAGATT
1 AAGAAACCCAAAATA
*
37761036 GAGAAACCCAAAATA
1 AAGAAACCCAAAATA
* *
37761051 AAGAAATCCAGAATA
1 AAGAAACCCAAAATA
37761066 AAGAAACC
1 AAGAAACC
37761074 TAAGATATGA
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
14 8 0.20
15 33 0.80
ACGTcount: A:0.61, C:0.16, G:0.12, T:0.10
Consensus pattern (15 bp):
AAGAAACCCAAAATA
Found at i:37761071 original size:30 final size:29
Alignment explanation
Indices: 37761007--37761073 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
37760997 TAAAGATAAC
* *
37761007 AAGAAAACCAAATAAAGAAATCCAAGATT
1 AAGAAACCCAAATAAAGAAATCCAAGATA
*
37761036 GAGAAACCCAAAATAAAGAAATCC-AGAATA
1 AAGAAACCC-AAATAAAGAAATCCAAG-ATA
37761066 AAGAAACC
1 AAGAAACC
37761074 TAAGATATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.61, C:0.16, G:0.12, T:0.10
Consensus pattern (29 bp):
AAGAAACCCAAATAAAGAAATCCAAGATA
Found at i:37764124 original size:46 final size:46
Alignment explanation
Indices: 37764057--37764320 Score: 224
Period size: 46 Copynumber: 5.7 Consensus size: 46
37764047 AACCCGCCTG
37764057 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTAGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTAGCATCCA
* *
37764103 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTAGCATCCA
* * * * *
37764151 TCA-CGAACTCGGACTTAACTCAACGAGTTC-GGACGTTTGCATCAA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTAGCATCCA
* * *
37764196 TAAGTGAACTCGGACTTAGCTCAACGAGTTCGGATGCCTAGTTA-CAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTAGCATCCA
* * *
37764244 TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGG-CGTTAGCATCCA
*
37764289 TAAGTGAACTCGGACTCAACTCAATGAGTTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCA
37764321 AATGCCCAAA
Statistics
Matches: 173, Mismatches: 23, Indels: 43
0.72 0.10 0.18
Matches are distributed among these distances:
42 6 0.03
43 8 0.05
44 3 0.02
45 4 0.02
46 81 0.47
47 49 0.28
48 5 0.03
49 3 0.02
50 7 0.04
51 7 0.04
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCGTTAGCATCCA
Found at i:37764177 original size:47 final size:47
Alignment explanation
Indices: 37764108--37764276 Score: 202
Period size: 47 Copynumber: 3.6 Consensus size: 47
37764098 ATCCATAAGT
*
37764108 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATATCAC
* * * * *
37764155 GAACTCGGACTTAACTCAACGAGTTCGGA--CGT--TTGCATCAATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--ATCA-C
* * *
37764201 GAACTCGGACTTAGCTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATATCAC
37764248 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
37764277 CGTTCGCATC
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 28 0.28
47 55 0.54
48 4 0.04
50 5 0.05
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATATCAC
Found at i:37764326 original size:93 final size:93
Alignment explanation
Indices: 37764062--37764319 Score: 428
Period size: 93 Copynumber: 2.8 Consensus size: 93
37764052 GCCTGTAAGT
37764062 GAACTCGGACTCAACTCAACGAGTTCAGG-CGTTAGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTC-GGACGTTAGCATCCATAAGTGAACTCGGACTCAACTCA
*
37764126 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
37764155 GAACTCGGACTTAACTCAACGAGTTCGGACGTTTGCATCAATAAGTGAACTCGGACTTAGCTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAGTGAACTCGGACTCAACTCAA
37764220 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
37764248 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAGTGAACTCGGACTCAACTCAA
*
37764313 TGAGTTC
66 CGAGTTC
37764320 AAATGCCCAA
Statistics
Matches: 152, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
92 2 0.01
93 150 0.99
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACGTTAGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:37765648 original size:31 final size:31
Alignment explanation
Indices: 37765607--37765670 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
37765597 CCTTTTCATA
* *
37765607 TTTCATATTTCATAACACTGGGTCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
37765638 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
37765669 TT
1 TT
37765671 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:37765967 original size:23 final size:24
Alignment explanation
Indices: 37765878--37766076 Score: 287
Period size: 24 Copynumber: 8.4 Consensus size: 24
37765868 CTGGAGGCCT
* *
37765878 AGCCTCTTTTAGTAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
** *
37765903 AGCCCTTTTTGTAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
37765927 AGCCCTTTTCATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
37765951 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
37765974 AGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
37765998 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
37766022 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
37766045 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
37766068 AGCCCTTTT
1 AGCCCTTTT
37766077 GCACTTCCTC
Statistics
Matches: 161, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
23 67 0.42
24 90 0.56
25 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:37765977 original size:71 final size:70
Alignment explanation
Indices: 37765885--37766076 Score: 312
Period size: 71 Copynumber: 2.7 Consensus size: 70
37765875 CCTAGCCTCT
* *
37765885 TTTAGTAACTGGGGCAAAAGCCCTTTTTGTAACTAGGGCATAAGCCCTTTTCATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCC-TTTTGTAACTAGGGCATAAGCCCTTTTCATAACTGGGGCAT
37765950 AAGCCC
65 AAGCCC
*
37765956 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTAGGGCATAAGCCCTTTTGATAACTGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTG-TAACTAGGGCATAAGCCCTTTTCATAACTGGGGCAT
37766021 AAGCCC
65 AAGCCC
** *
37766027 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTTGTAACTAGGGCATAAGCCCTTTT
37766077 GCACTTCCTC
Statistics
Matches: 114, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
70 26 0.23
71 88 0.77
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (70 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGTAACTAGGGCATAAGCCCTTTTCATAACTGGGGCATA
AGCCC
Found at i:37766148 original size:9 final size:9
Alignment explanation
Indices: 37766134--37766190 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
37766124 ATCTCATGTG
37766134 CATATCATA
1 CATATCATA
*
37766143 CATATCATGTG
1 CATATCA--TA
37766154 CATATCATA
1 CATATCATA
* *
37766163 CATGTCATGTG
1 CATATCA--TA
37766174 CATATCATA
1 CATATCATA
37766183 CATATCAT
1 CATATCAT
37766191 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:37766150 original size:20 final size:20
Alignment explanation
Indices: 37766122--37766192 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
37766112 GCATTTATGA
*
37766122 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
37766142 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
37766162 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
37766182 ACATATCATGT
1 ACATATCATGT
37766193 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:37766157 original size:11 final size:11
Alignment explanation
Indices: 37766127--37766181 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
37766117 TATGAACATC
37766127 TCATGTGCATA
1 TCATGTGCATA
*
37766138 TCA--TACATA
1 TCATGTGCATA
37766147 TCATGTGCATA
1 TCATGTGCATA
* *
37766158 TCA--TACATG
1 TCATGTGCATA
37766167 TCATGTGCATA
1 TCATGTGCATA
37766178 TCAT
1 TCAT
37766182 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:37766257 original size:25 final size:25
Alignment explanation
Indices: 37766229--37766276 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37766219 ATGTATAAAC
* *
37766229 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
*
37766254 CCTAGGGGCAAAATGGTTATTTT
1 CCTAGGGGCAAAATGGTCATTTT
37766277 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:37767565 original size:27 final size:27
Alignment explanation
Indices: 37767438--37767556 Score: 204
Period size: 27 Copynumber: 4.4 Consensus size: 27
37767428 GGGCATATTC
* *
37767438 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTACG
37767465 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
37767492 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
37767519 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
37767546 GTCACTTTACC
1 GTCACTTTACC
37767557 TAATAGGGGT
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
27 88 0.99
28 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:37767640 original size:27 final size:27
Alignment explanation
Indices: 37767587--37767802 Score: 150
Period size: 27 Copynumber: 8.0 Consensus size: 27
37767577 TTTCATCCTA
* * * *
37767587 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
**
37767614 CAAGGGTATTTTAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * *
37767641 CAAAGGTATTTCTA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-TAGTAA-TTTTACAAA-C
* ** *
37767670 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTACAAAC
* * *
37767697 CAGGGGTATTTTGGTAA-TTTACAAAT
1 CAAGGGTATTTTAGTAATTTTACAAAC
** ** *
37767723 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
*
37767750 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAAC
* * *
37767777 TAGGGGTATTTTAGTAATTTTGCAAA
1 CAAGGGTATTTTAGTAATTTTACAAA
37767803 TTGAGGGTAA
Statistics
Matches: 152, Mismatches: 31, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
26 21 0.14
27 101 0.66
28 15 0.10
29 15 0.10
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTACAAAC
Found at i:37767819 original size:27 final size:27
Alignment explanation
Indices: 37767789--37768000 Score: 221
Period size: 27 Copynumber: 7.9 Consensus size: 27
37767779 GGGGTATTTT
* * *
37767789 AGTAATTTTGCAAATTGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
37767816 AGTAATTCAGTAAATTGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
37767843 AGTAATTCTATAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
37767870 AGTAATTCAGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
37767897 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
37767924 -GATAATTATGTAAAT-TAGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* * *
37767951 GGTAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
37767978 AGTAATTCTATAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
37768001 CTTTGGTAAT
Statistics
Matches: 158, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.01
27 155 0.98
28 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:37768054 original size:27 final size:26
Alignment explanation
Indices: 37768006--37768083 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 26
37767996 GGGTACTTTG
* *
37768006 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-ACTAAGGTATTTCA
*
37768033 GTAATTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAA-GGTATTTCA
* *
37768060 GTAATTTTAGTAAACTAAAGTATT
1 GTAATTTTA-CAAACTAAGGTATT
37768084 CTAAACATGG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
26 3 0.07
27 34 0.77
28 7 0.16
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (26 bp):
GTAATTTTACAAACTAAGGTATTTCA
Found at i:37772479 original size:49 final size:49
Alignment explanation
Indices: 37772398--37772643 Score: 287
Period size: 49 Copynumber: 5.0 Consensus size: 49
37772388 GTAGCCGAAG
* * * * *
37772398 CTATTTGGTACGCATAGTAGCCTGCACCTAGTACTACACATGTGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
* *
37772447 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AA
* * *
37772497 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA
* * * * * *
37772547 GTTAT-TAGGTACGCATAGTAGCCTGCACTTAGTACTAAACATGCGACCAA
1 -CTATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
* *
37772597 CAATCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
37772644 TCACAATAGC
Statistics
Matches: 163, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
49 77 0.47
50 50 0.31
51 36 0.22
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
Found at i:37772631 original size:100 final size:99
Alignment explanation
Indices: 37772412--37772643 Score: 322
Period size: 100 Copynumber: 2.3 Consensus size: 99
37772402 TTGGTACGCA
* * * *
37772412 TAGTAGCCTGCACCTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* * *
37772477 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTAAACACGCGACCTAACAATCTGATACACG
* * *
37772511 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATTAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* * *
37772576 TAGTACTAAACATGCGACC-AACAATCTGGTACATG
64 TAGTACTAAACACGCGACCTAACAATCTGATACACG
37772611 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
37772644 TCACAATAGC
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
99 30 0.26
100 47 0.40
101 40 0.34
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTAAACACGCGACCTAACAATCTGATACACG
Found at i:37774731 original size:25 final size:25
Alignment explanation
Indices: 37774702--37774749 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37774692 TTATAATATG
* * *
37774702 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
37774727 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
37774750 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:37774818 original size:20 final size:20
Alignment explanation
Indices: 37774793--37774851 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
37774783 TAAATATGGT
37774793 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
37774813 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
37774833 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
37774852 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:37774833 original size:11 final size:11
Alignment explanation
Indices: 37774797--37774851 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
37774787 TATGGTATGT
37774797 ATGATATGCAC
1 ATGATATGCAC
* *
37774808 ATGAAATG--T
1 ATGATATGCAC
37774817 ATGATATGCAC
1 ATGATATGCAC
*
37774828 ATGATATG--T
1 ATGATATGCAC
37774837 ATGATATGCAC
1 ATGATATGCAC
37774848 ATGA
1 ATGA
37774852 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:37774939 original size:23 final size:23
Alignment explanation
Indices: 37774902--37775062 Score: 208
Period size: 23 Copynumber: 7.0 Consensus size: 23
37774892 GAGGAAGTGA
37774902 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
37774925 CAAAAGGG-TTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
37774948 --AAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
37774969 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
37774992 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
37775015 GAAAGGG-TTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
37775038 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
37775062 A
1 A
37775063 TGATAAAGCA
Statistics
Matches: 124, Mismatches: 5, Indels: 16
0.86 0.03 0.11
Matches are distributed among these distances:
20 5 0.04
21 15 0.12
22 12 0.10
23 70 0.56
24 15 0.12
25 7 0.06
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:37774967 original size:44 final size:44
Alignment explanation
Indices: 37774903--37775062 Score: 200
Period size: 44 Copynumber: 3.5 Consensus size: 44
37774893 AGGAAGTGAA
37774903 AAAGGGCTTATGCCCCAGTTATCAAAAGGGTTATGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGTTATGCCCCAGTTAT
37774948 -AAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTATAAAAGGG-TTATGCCCCAGTTAT
* *
37774992 AAAAGGGCTTATG-CCCAGTTATTGAAAGGGTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTA-TAAAAGGGTTATGCCCCAGTTA-T
*
37775038 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
37775063 TGATAAAGCA
Statistics
Matches: 103, Mismatches: 4, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
43 7 0.07
44 36 0.35
45 21 0.20
46 27 0.26
47 5 0.05
48 7 0.07
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (44 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGTTATGCCCCAGTTAT
Found at i:37775288 original size:31 final size:31
Alignment explanation
Indices: 37775253--37775316 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
37775243 CGTTTACAGT
37775253 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
37775284 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37775315 AA
1 AA
37775317 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37781486 original size:25 final size:25
Alignment explanation
Indices: 37781457--37781504 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37781447 TTATAATATG
* * *
37781457 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
37781482 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
37781505 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:37781573 original size:20 final size:20
Alignment explanation
Indices: 37781548--37781606 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
37781538 TAAATATGGT
37781548 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
37781568 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
37781588 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
37781607 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:37781588 original size:11 final size:11
Alignment explanation
Indices: 37781552--37781606 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
37781542 TATGGTATGT
37781552 ATGATATGCAC
1 ATGATATGCAC
* *
37781563 ATGAAATG--T
1 ATGATATGCAC
37781572 ATGATATGCAC
1 ATGATATGCAC
*
37781583 ATGATATG--T
1 ATGATATGCAC
37781592 ATGATATGCAC
1 ATGATATGCAC
37781603 ATGA
1 ATGA
37781607 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:37781748 original size:46 final size:46
Alignment explanation
Indices: 37781658--37781797 Score: 194
Period size: 47 Copynumber: 3.0 Consensus size: 46
37781648 AGGAAGTGAA
37781658 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
37781705 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTA-TC
* *
37781752 AAAGGG-TTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
37781798 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
46 35 0.41
47 41 0.48
48 10 0.12
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:37781773 original size:23 final size:24
Alignment explanation
Indices: 37781657--37781797 Score: 191
Period size: 23 Copynumber: 6.0 Consensus size: 24
37781647 GAGGAAGTGA
*
37781657 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
37781681 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
*
37781704 CAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
37781727 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
37781751 GAAAGGG-TTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
37781774 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
37781798 ATGATAAAGC
Statistics
Matches: 105, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
23 62 0.59
24 35 0.33
25 8 0.08
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:37782024 original size:31 final size:31
Alignment explanation
Indices: 37781989--37782052 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
37781979 CGTTTACAGT
37781989 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
37782020 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
37782051 AA
1 AA
37782053 TATGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:37783085 original size:30 final size:30
Alignment explanation
Indices: 37783051--37783110 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
37783041 CTTTAATACG
37783051 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* * *
37783081 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
37783111 GGCTCGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:37797613 original size:10 final size:10
Alignment explanation
Indices: 37797600--37797627 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
37797590 TATAATAAAT
37797600 AAAAGAAACA
1 AAAAGAAACA
37797610 AAAAGAAACA
1 AAAAGAAACA
37797620 AAAAGAAA
1 AAAAGAAA
37797628 AAGAATTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.82, C:0.07, G:0.11, T:0.00
Consensus pattern (10 bp):
AAAAGAAACA
Found at i:37800604 original size:62 final size:59
Alignment explanation
Indices: 37800513--37800629 Score: 144
Period size: 62 Copynumber: 1.9 Consensus size: 59
37800503 ATTGATTATC
* * * *
37800513 TTAAAATTAAATTAAATTTAATGTTTATCTTGTAGATAAATATTCTATTATTTTAATAAGAT
1 TTAAAATTAAATTAAATCTAATGTTTATC-T-T-CATAAATATTATATTAATTTAATAAGAT
* * *
37800575 TTAATATTAAATTTAATCTAATTTTTATCTTCATAAATATTATATTAATTTAATA
1 TTAAAATTAAATTAAATCTAATGTTTATCTTCATAAATATTATATTAATTTAATA
37800630 TTAAAGTGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 21 0.44
60 1 0.02
61 1 0.02
62 25 0.52
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.50
Consensus pattern (59 bp):
TTAAAATTAAATTAAATCTAATGTTTATCTTCATAAATATTATATTAATTTAATAAGAT
Found at i:37803566 original size:860 final size:860
Alignment explanation
Indices: 37801908--37803629 Score: 3300
Period size: 860 Copynumber: 2.0 Consensus size: 860
37801898 TTTTGAGATT
37801908 AATTGATTCTTATGAATGGATATTATAGAATTGACATAGCATGCCATGCATATATTGGAAGCATG
1 AATTGATTCTTATGAATGGATATTATAGAATTGACATAGCATGCCATGCATATATTGGAAGCATG
*
37801973 TCAGTTAGATTAGGTAAGAATGCCACTAAGACTATTGCATGATCATTCTTGAAATTTGGGATAAA
66 TCAGTTAGATTAGGTAAGAATGCCACTAAGACTATTCCATGATCATTCTTGAAATTTGGGATAAA
37802038 AACCTTACATGTTATTAAAATATTGAGTGGGCGAAGGTCATTGAACAAGACCTACAACCTCCATT
131 AACCTTACATGTTATTAAAATATTGAGTGGGCGAAGGTCATTGAACAAGACCTACAACCTCCATT
*
37802103 GATGGTCCCTAAGTGGTAACATCATAAAGTTTCGAGCTGTTTCTTACCCTGGCCGTACCCCAAGG
196 GATGGTCCCTAAGTGGTAACATCATAAAGTTTCGAGCTATTTCTTACCCTGGCCGTACCCCAAGG
* *
37802168 TAAACTTTGTCATGTGGGTTCTCTAGGTGGAATTTTCTTTTAAGGACAACTAATCATGCATGACT
261 TAAACTTTGTCATGTGGGTTCACTAGGTGGAATTTTCCTTTAAGGACAACTAATCATGCATGACT
37802233 TTAAGAGAGATTGTCCCAAGATGACTCACAAATGAAAACATGTTCATGATGGGCGTTGAGTCAAT
326 TTAAGAGAGATTGTCCCAAGATGACTCACAAATGAAAACATGTTCATGATGGGCGTTGAGTCAAT
37802298 GGTTACACACTCAAGATCATCTCTTATTAAATAGCTTCCCAAGAAATGATATTTAAGCTAGAGAT
391 GGTTACACACTCAAGATCATCTCTTATTAAATAGCTTCCCAAGAAATGATATTTAAGCTAGAGAT
*
37802363 GATGGTCAAACATTAAACAATCATTAGTTCGTATGGAGTCTTAAGAATTAAGATTCAGGAACTGA
456 GATGGTCAAACATTAAACAATCATTAGTTCGTATGGAGTCTTAAGAATTAAGATTCAAGAACTGA
* * *
37802428 TTGGACGTAATCCATGTTCTTGCTATTTAATCATGGGACCCCAAGGCGACATGGTTGATGGGTGT
521 TTGGACGTAATCCATGTTCTTGCTAGTTAATCATAGGACCCCAAGGCGAAATGGTTGATGGGTGT
* *
37802493 GAGAATGATCGTAGCAAAGAAAAACTATGTTTTCAAAGTTTTAATACAAGACGCATGCATCATAC
586 GAGAATGATCATAGCAAAGAAAAACTATGTTTTCAAAGTTTTAATACAAGACACATGCATCATAC
*
37802558 TGCATTCTTGATATGTTGCTAAAATGAAAAATATTTATTTAATACAAAGATAGTAATTAGTGAAA
651 TACATTCTTGATATGTTGCTAAAATGAAAAATATTTATTTAATACAAAGATAGTAATTAGTGAAA
37802623 TCTTTATTTTTTCAGTTCAAATATGTCTCCCACTCCTCTTAGTAACATTCTTACTAAGAAAAAAT
716 TCTTTATTTTTTCAGTTCAAATATGTCTCCCACTCCTCTTAGTAACATTCTTACTAAGAAAAAAT
37802688 TAAATGGGGATAACTTTCGAAATGGAAATGAAACTTGCTGATGGTTCTCAACTGTTAGAAATACA
781 TAAATGGGGATAACTTTCGAAATGGAAATGAAACTTGCTGATGGTTCTCAACTGTTAGAAATACA
37802753 AATTTATTCTTTACG
846 AATTTATTCTTTACG
37802768 AATTGATTCTTATGAATGGATATTATAGAATTGACATAGCATGCCATGCATATATTGGAAGCATG
1 AATTGATTCTTATGAATGGATATTATAGAATTGACATAGCATGCCATGCATATATTGGAAGCATG
37802833 TCAGTTAGATTAGGTAAGAATGCCACTAAGACTATTCCATGATCATTCTTGAAATTTGGGATAAA
66 TCAGTTAGATTAGGTAAGAATGCCACTAAGACTATTCCATGATCATTCTTGAAATTTGGGATAAA
*
37802898 AACCTTACATGTTATTAAAATATTGAGTGGGCGAAGGTCATTGAACAAGACCTACAGCCTCCATT
131 AACCTTACATGTTATTAAAATATTGAGTGGGCGAAGGTCATTGAACAAGACCTACAACCTCCATT
37802963 GATGGTCCCTAAGTGGTAACATCATAAAGTTTCGAGCTATTTCTTACCCTGGCCGTACCCCAAGG
196 GATGGTCCCTAAGTGGTAACATCATAAAGTTTCGAGCTATTTCTTACCCTGGCCGTACCCCAAGG
37803028 TAAACTTTGTCATGTGGGTTCACTAGGTGGAATTTTCCTTTAAGGACAACTAATCATGCATGACT
261 TAAACTTTGTCATGTGGGTTCACTAGGTGGAATTTTCCTTTAAGGACAACTAATCATGCATGACT
* * *
37803093 TTCAGAGAGATTGTCCCAAGATGACTCATAAATGAAAGCATGTTCATGATGGGCGTTGAGTCAAT
326 TTAAGAGAGATTGTCCCAAGATGACTCACAAATGAAAACATGTTCATGATGGGCGTTGAGTCAAT
37803158 GGTTACACACTCAAGATCATCTCTTATTAAATAGCTTCCCAAGAAATGATATTTAAGCTAGAGAT
391 GGTTACACACTCAAGATCATCTCTTATTAAATAGCTTCCCAAGAAATGATATTTAAGCTAGAGAT
37803223 GATGGTCAAACATTAAACAATCATTAGTTCGTATGGAGTCTTAAGAATTAAGATTCAAGAACTGA
456 GATGGTCAAACATTAAACAATCATTAGTTCGTATGGAGTCTTAAGAATTAAGATTCAAGAACTGA
37803288 TTGGACGTAATCCATGTTCTTGCTAGTTAATCATAGGACCCCAAGGCGAAATGGTTGATGGGTGT
521 TTGGACGTAATCCATGTTCTTGCTAGTTAATCATAGGACCCCAAGGCGAAATGGTTGATGGGTGT
37803353 GAGAATGATCATAGCAAAGAAAAACTATGTTTTCAAAGTTTTAATACAAGACACATGCATCATAC
586 GAGAATGATCATAGCAAAGAAAAACTATGTTTTCAAAGTTTTAATACAAGACACATGCATCATAC
37803418 TACATTCTTGATATGTTGCTAAAATGAAAAATATTTATTTAATACAAAGATAGTAATTAGTGAAA
651 TACATTCTTGATATGTTGCTAAAATGAAAAATATTTATTTAATACAAAGATAGTAATTAGTGAAA
*
37803483 TCTTTATTTTTTCAGTTCAAATATGTCTCCCACTCCTCTTAGTAACATTCTTACTAAGAAGAAAT
716 TCTTTATTTTTTCAGTTCAAATATGTCTCCCACTCCTCTTAGTAACATTCTTACTAAGAAAAAAT
37803548 TAAATGGGGATAACTTTCGAAATGGAAATGAAACTTGCTGATGGTTCTCAACTGTTAGAAATACA
781 TAAATGGGGATAACTTTCGAAATGGAAATGAAACTTGCTGATGGTTCTCAACTGTTAGAAATACA
37803613 AATTTATTCTTTACG
846 AATTTATTCTTTACG
37803628 AA
1 AA
37803630 ATGTGCCCTC
Statistics
Matches: 846, Mismatches: 16, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
860 846 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (860 bp):
AATTGATTCTTATGAATGGATATTATAGAATTGACATAGCATGCCATGCATATATTGGAAGCATG
TCAGTTAGATTAGGTAAGAATGCCACTAAGACTATTCCATGATCATTCTTGAAATTTGGGATAAA
AACCTTACATGTTATTAAAATATTGAGTGGGCGAAGGTCATTGAACAAGACCTACAACCTCCATT
GATGGTCCCTAAGTGGTAACATCATAAAGTTTCGAGCTATTTCTTACCCTGGCCGTACCCCAAGG
TAAACTTTGTCATGTGGGTTCACTAGGTGGAATTTTCCTTTAAGGACAACTAATCATGCATGACT
TTAAGAGAGATTGTCCCAAGATGACTCACAAATGAAAACATGTTCATGATGGGCGTTGAGTCAAT
GGTTACACACTCAAGATCATCTCTTATTAAATAGCTTCCCAAGAAATGATATTTAAGCTAGAGAT
GATGGTCAAACATTAAACAATCATTAGTTCGTATGGAGTCTTAAGAATTAAGATTCAAGAACTGA
TTGGACGTAATCCATGTTCTTGCTAGTTAATCATAGGACCCCAAGGCGAAATGGTTGATGGGTGT
GAGAATGATCATAGCAAAGAAAAACTATGTTTTCAAAGTTTTAATACAAGACACATGCATCATAC
TACATTCTTGATATGTTGCTAAAATGAAAAATATTTATTTAATACAAAGATAGTAATTAGTGAAA
TCTTTATTTTTTCAGTTCAAATATGTCTCCCACTCCTCTTAGTAACATTCTTACTAAGAAAAAAT
TAAATGGGGATAACTTTCGAAATGGAAATGAAACTTGCTGATGGTTCTCAACTGTTAGAAATACA
AATTTATTCTTTACG
Found at i:37805113 original size:29 final size:29
Alignment explanation
Indices: 37805080--37805138 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
37805070 TATACATGCC
37805080 ATAGACTTAAAGTGCTTGAAATCATTTAT
1 ATAGACTTAAAGTGCTTGAAATCATTTAT
37805109 ATAGACTTAAAGTGCTTGAAATCATTTAT
1 ATAGACTTAAAGTGCTTGAAATCATTTAT
37805138 A
1 A
37805139 CCCTTCAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (29 bp):
ATAGACTTAAAGTGCTTGAAATCATTTAT
Found at i:37806461 original size:96 final size:96
Alignment explanation
Indices: 37806358--37806607 Score: 259
Period size: 96 Copynumber: 2.6 Consensus size: 96
37806348 ATGTCCCAGG
* * * * * * *
37806358 CACGGTCTTATACGAGACCTCATATCGATGACAATGCCATATCTTAGATATGGTCTTTCA-TAGG
1 CACGGTCTTACAAGGGATCTCATATCGATGCCAATGCCATATCCTAGATATGGTCTTACACT-GG
* *
37806422 ATCTCATGTCAATGCCAATGCCATATCCCAAA
65 ATCTCATCTCAATGCCAATACCATATCCCAAA
* * * * ** ** *
37806454 TATGGTCTTACATGGGATTTCATATCGATGCCGGTGTTATATCCCAGATATGGTCTTACACTGGA
1 CACGGTCTTACAAGGGATCTCATATCGATGCCAATGCCATATCCTAGATATGGTCTTACACTGGA
* * *
37806519 TCTCATCTCGATGCCTATACCATATCCCAGA
66 TCTCATCTCAATGCCAATACCATATCCCAAA
* * * *
37806550 CACAGTCTTACAAGGGATCTCATATTGATGCCAATACCATATCCTAGATATCGTCTTA
1 CACGGTCTTACAAGGGATCTCATATCGATGCCAATGCCATATCCTAGATATGGTCTTA
37806608 TACGGGATTT
Statistics
Matches: 120, Mismatches: 33, Indels: 2
0.77 0.21 0.01
Matches are distributed among these distances:
96 119 0.99
97 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (96 bp):
CACGGTCTTACAAGGGATCTCATATCGATGCCAATGCCATATCCTAGATATGGTCTTACACTGGA
TCTCATCTCAATGCCAATACCATATCCCAAA
Found at i:37806615 original size:48 final size:48
Alignment explanation
Indices: 37806338--37806615 Score: 232
Period size: 48 Copynumber: 5.8 Consensus size: 48
37806328 CTCATAATAG
* * ** * * * *
37806338 TGCCGATGCCATGTCCCAGGCACGGTCTTATACGAGACCTCATATCGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGA
* ** * ** * *
37806386 TGACAATGCCATATCTTAGATATGGTCTTTCATAGGATCTCATGTCAA
1 TGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGA
* * *
37806434 TGCCAATGCCATATCCCAAATATGGTCTTACATGGGATTTCATATCGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGA
** ** * *
37806482 TGCCGGTGTTATATCCCAGATATGGTCTTACACTGGATCTCATCTCGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGA
* * * ** * *
37806530 TGCCTATACCATATCCCAGACACAGTCTTACAAGGGATCTCATATTGA
1 TGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGA
* * * *
37806578 TGCCAATACCATATCCTAGATATCGTCTTATACGGGAT
1 TGCCAATGCCATATCCCAGATATGGTCTTACACGGGAT
37806616 TTCAAAACTC
Statistics
Matches: 177, Mismatches: 53, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
48 177 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (48 bp):
TGCCAATGCCATATCCCAGATATGGTCTTACACGGGATCTCATATCGA
Found at i:37820702 original size:32 final size:32
Alignment explanation
Indices: 37820661--37820731 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
37820651 CACTTAGCCT
*
37820661 CAGACATAGGATATAATGCCGATGCCATGCCC
1 CAGACATAGGATATAATGCAGATGCCATGCCC
37820693 CAGACATAGGATATAATGCAGATGCCATGCCC
1 CAGACATAGGATATAATGCAGATGCCATGCCC
37820725 CAGACAT
1 CAGACAT
37820732 GGTCTTACAC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.18
Consensus pattern (32 bp):
CAGACATAGGATATAATGCAGATGCCATGCCC
Found at i:37820827 original size:45 final size:44
Alignment explanation
Indices: 37820778--37820881 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 44
37820768 CATGTCTGAA
*
37820778 ACATGGTCTTACACTGAC-ACATCTTGTAGCCGATGCATGTCCTAG
1 ACAT-GTCTTACACTGACTACATCTCG-AGCCGATGCATGTCCTAG
* * *
37820823 ACATGTCTTACAGTGTCTTACATCTCGAGGCGATGCATGTCCTAG
1 ACATGTCTTACACTGAC-TACATCTCGAGCCGATGCATGTCCTAG
*
37820868 ACATGTCATACACT
1 ACATGTCTTACACT
37820882 AGCTCTCGTC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
44 11 0.22
45 33 0.65
46 7 0.14
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (44 bp):
ACATGTCTTACACTGACTACATCTCGAGCCGATGCATGTCCTAG
Found at i:37829988 original size:48 final size:48
Alignment explanation
Indices: 37829917--37830047 Score: 217
Period size: 48 Copynumber: 2.7 Consensus size: 48
37829907 CGAGAGTCTT
* * *
37829917 GCACCCTAAGTGCCAATATCATGGCCTGAAGCCAACTCAATGAATCTC
1 GCACCCGAAGTGCCAATATCATGGCCCGAAGCCAACTCAATAAATCTC
* *
37829965 GCACCTGAAGTGCCAATATCATGGCCCGAAGCCCACTCAATAAATCTC
1 GCACCCGAAGTGCCAATATCATGGCCCGAAGCCAACTCAATAAATCTC
37830013 GCACCCGAAGTGCCAATATCATGGCCCGAAGCCAA
1 GCACCCGAAGTGCCAATATCATGGCCCGAAGCCAA
37830048 ATTAATGTAA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.31, C:0.33, G:0.18, T:0.18
Consensus pattern (48 bp):
GCACCCGAAGTGCCAATATCATGGCCCGAAGCCAACTCAATAAATCTC
Found at i:37832007 original size:40 final size:39
Alignment explanation
Indices: 37831935--37832117 Score: 179
Period size: 40 Copynumber: 4.6 Consensus size: 39
37831925 AAAATCACAC
* *
37831935 CAAGGGCATCATAAATGCATAACAGGGGCACCAAAGTGCAA
1 CAAGGGCA-CATATATGCAT-TCAGGGGCACCAAAGTGCAA
* * *
37831976 TCAAGAGCACAAATATGCATTCAGGGTCACCAAAGTGCAA
1 -CAAGGGCACATATATGCATTCAGGGGCACCAAAGTGCAA
* *
37832016 -AAGGGACACATATGTGCATTCAGGGGCATCAAAGTGCAA
1 CAAGGG-CACATATATGCATTCAGGGGCACCAAAGTGCAA
* * *
37832055 CCAAGGGCACGTATATGCATTCAGGGGTACCAAAGTACAAA
1 -CAAGGGCACATATATGCATTCAGGGGCACCAAAGTGC-AA
* ** *
37832096 AAAGGGCATGTATGTGCATTCA
1 CAAGGGCACATATATGCATTCA
37832118 AGGCTATCGA
Statistics
Matches: 119, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 4 0.03
39 29 0.24
40 63 0.53
41 16 0.13
42 7 0.06
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.17
Consensus pattern (39 bp):
CAAGGGCACATATATGCATTCAGGGGCACCAAAGTGCAA
Found at i:37832052 original size:20 final size:19
Alignment explanation
Indices: 37831957--37832053 Score: 61
Period size: 20 Copynumber: 4.9 Consensus size: 19
37831947 AAATGCATAA
*
37831957 CAGGGGCACCAAAGTGCAAT
1 CAGGGGCA-CAAAGTGCATT
* * *
37831977 CAAGAGCACAAATATGCATT
1 CAGGGGCACAAA-GTGCATT
* *
37831997 CAGGGTCACCAAAGTGCA-A
1 CAGGGGCA-CAAAGTGCATT
* * *
37832016 AAGGGACACATATGTGCATT
1 CAGGGGCACA-AAGTGCATT
37832036 CAGGGGCATCAAAGTGCA
1 CAGGGGCA-CAAAGTGCA
37832054 ACCAAGGGCA
Statistics
Matches: 56, Mismatches: 16, Indels: 10
0.68 0.20 0.12
Matches are distributed among these distances:
18 2 0.04
19 16 0.29
20 32 0.57
21 6 0.11
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (19 bp):
CAGGGGCACAAAGTGCATT
Found at i:37832135 original size:40 final size:40
Alignment explanation
Indices: 37832014--37832157 Score: 121
Period size: 40 Copynumber: 3.6 Consensus size: 40
37832004 ACCAAAGTGC
* * *
37832014 AAAAGGGACACATATGTGCATTCAGGGGC-ATCAAAGTG-CAA
1 AAAAGGG-CACGTATGTGCATTCA-AGGCTACCAAAG-GACAA
** * * * *
37832055 CCAAGGGCACGTATATGCATTCAGGGGTACCAAAGTACAA
1 AAAAGGGCACGTATGTGCATTCAAGGCTACCAAAGGACAA
* * *
37832095 AAAAGGGCATGTATGTGCATTCAAGGCTATCGAAGGACAA
1 AAAAGGGCACGTATGTGCATTCAAGGCTACCAAAGGACAA
* *
37832135 ACAGGGGCACGTATGTGCATTCA
1 AAAAGGGCACGTATGTGCATTCA
37832158 GCAAAAAATA
Statistics
Matches: 82, Mismatches: 19, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
39 3 0.04
40 74 0.90
41 5 0.06
ACGTcount: A:0.35, C:0.19, G:0.27, T:0.19
Consensus pattern (40 bp):
AAAAGGGCACGTATGTGCATTCAAGGCTACCAAAGGACAA
Found at i:37832154 original size:80 final size:80
Alignment explanation
Indices: 37831961--37832158 Score: 208
Period size: 80 Copynumber: 2.5 Consensus size: 80
37831951 GCATAACAGG
* * * ** *
37831961 GGCACCAAAGTGCAATCAAGAGCACAAATATGCATTCA-GGGTCACCAAAGTGCAAAAGGGACAC
1 GGCATCAAAGTGCAAACAAGGGCACGTATATGCATTCAGGGGTCACCAAAGTACAAAAGGGACAC
*
37832025 ATATGTGCATTCAGG
66 ATATGTGCATTCAGA
*
37832040 GGCATCAAAGTGCAACCAAGGGCACGTATATGCATTCAGGGGT-ACCAAAGTACAAAAAAGGG-C
1 GGCATCAAAGTGCAAACAAGGGCACGTATATGCATTCAGGGGTCACCAAAGTAC--AAAAGGGAC
**
37832103 ATGTATGTGCATTCA-A
64 ACATATGTGCATTCAGA
* * *
37832119 GGCTATCGAAG-GACAAACAGGGGCACGTATGTGCATTCAG
1 GGC-ATCAAAGTG-CAAACAAGGGCACGTATATGCATTCAG
37832159 CAAAAAATAT
Statistics
Matches: 101, Mismatches: 13, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
79 46 0.46
80 48 0.48
81 7 0.07
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.18
Consensus pattern (80 bp):
GGCATCAAAGTGCAAACAAGGGCACGTATATGCATTCAGGGGTCACCAAAGTACAAAAGGGACAC
ATATGTGCATTCAGA
Found at i:37832780 original size:29 final size:29
Alignment explanation
Indices: 37832718--37832782 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
37832708 TTGTGTCTGC
* * * *
37832718 CCATATGTCTACTCATGTGCTTCACACAG
1 CCATGTGTCTACCCATGTGCTTAACACAA
* *
37832747 TCATGTGTCTACCCGTGTGCTTAACACAA
1 CCATGTGTCTACCCATGTGCTTAACACAA
37832776 CCATGTG
1 CCATGTG
37832783 AAAGCCTGTG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (29 bp):
CCATGTGTCTACCCATGTGCTTAACACAA
Found at i:37837603 original size:52 final size:52
Alignment explanation
Indices: 37837546--37837649 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 52
37837536 ATATGTATGA
** * *
37837546 GGCATCCGAGCTCGTTGAGCTGGTCTGAGTTCATGATGGATGTGATACATGT
1 GGCATCCGAGCTCGTTGAGCTGGTCCAAGTTCATAATGGATGCGATACATGT
* *
37837598 GGCATCCGATCTCGTTGAGTTGGTCCAAGTTCATAATGGATGCGATACATGT
1 GGCATCCGAGCTCGTTGAGCTGGTCCAAGTTCATAATGGATGCGATACATGT
37837650 AATTGGGTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (52 bp):
GGCATCCGAGCTCGTTGAGCTGGTCCAAGTTCATAATGGATGCGATACATGT
Found at i:37839562 original size:16 final size:16
Alignment explanation
Indices: 37839520--37839562 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
37839510 GTAGCCAAAC
37839520 TTTTGGCTTTTCGGCA
1 TTTTGGCTTTTCGGCA
* *
37839536 TTTTAGCTTTTTGGCA
1 TTTTGGCTTTTCGGCA
*
37839552 TTTTGGATTTT
1 TTTTGGCTTTT
37839563 GCCGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.58
Consensus pattern (16 bp):
TTTTGGCTTTTCGGCA
Found at i:37843815 original size:40 final size:40
Alignment explanation
Indices: 37843756--37843963 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 40
37843746 TGGAAAACAA
* *
37843756 CCGGATATAACCACATGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACGACTTGCACAAATGCCTTCGGGTCTTAGC
* *
37843796 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACGACTTGCACAAATGCCTTCGGGTCTTAGC
* * * *
37843836 CCAGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACGACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
37843876 CCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACGACTTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
37843916 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACGACTTGCACAAATGCCTTCGGGTCTTAGC
37843956 CCGGATAT
1 CCGGATAT
37843964 CATTAAATTG
Statistics
Matches: 141, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
40 140 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAACGACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:37851799 original size:40 final size:39
Alignment explanation
Indices: 37851754--37851961 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
37851744 CGGAATACAA
*
37851754 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
37851794 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
37851834 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
37851874 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
37851914 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
37851954 CCGGATAT
1 CCGGATAT
37851962 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:37851894 original size:80 final size:81
Alignment explanation
Indices: 37851754--37851959 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
37851744 CGGAATACAA
* * *
37851754 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
37851818 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
37851834 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
37851897 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
37851914 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
37851960 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:37859799 original size:40 final size:39
Alignment explanation
Indices: 37859754--37859961 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
37859744 CGGAATACAA
*
37859754 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
37859794 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
37859834 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
37859874 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
37859914 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
37859954 CCGGATAT
1 CCGGATAT
37859962 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:37859894 original size:80 final size:81
Alignment explanation
Indices: 37859754--37859959 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
37859744 CGGAATACAA
* * *
37859754 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
37859818 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
37859834 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
37859897 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * ** * *
37859914 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
37859960 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
80 104 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:37866057 original size:28 final size:29
Alignment explanation
Indices: 37865950--37866067 Score: 118
Period size: 29 Copynumber: 4.1 Consensus size: 29
37865940 TAGTCAATCT
*
37865950 CATTTATATGGCCCATCTA-GCCCAATTCA
1 CATTCATATGGCCCAT-TAGGCCCAATTCA
* * *
37865979 CGTTCATATGGCCCATTAGACCGAATTCA
1 CATTCATATGGCCCATTAGGCCCAATTCA
*
37866008 CATTCCTATGGCCCATTAGGCCCAATCTC-
1 CATTCATATGGCCCATTAGGCCCAAT-TCA
* *
37866037 C-TTTATATGGCCCATCT-GGCCCAAATCA
1 CATTCATATGGCCCAT-TAGGCCCAATTCA
37866065 CAT
1 CAT
37866068 AGCATCACTT
Statistics
Matches: 73, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
27 2 0.03
28 22 0.30
29 47 0.64
30 2 0.03
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (29 bp):
CATTCATATGGCCCATTAGGCCCAATTCA
Found at i:37866067 original size:57 final size:58
Alignment explanation
Indices: 37865956--37866067 Score: 133
Period size: 57 Copynumber: 1.9 Consensus size: 58
37865946 ATCTCATTTA
* *
37865956 TATGGCCCATCTAGCCCAATTCACGTTCATATGGCCCATTAGACCGAATTCACATTCC
1 TATGGCCCATCTAGCCCAATTCACGTTCATATGGCCCATTAGACCCAAATCACATTCC
* *
37866014 TATGGCCCAT-TAGGCCCAATCTC-C-TTTATATGGCCCATCT-GGCCCAAATCACAT
1 TATGGCCCATCTA-GCCCAAT-TCACGTTCATATGGCCCAT-TAGACCCAAATCACAT
37866068 AGCATCACTT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
57 26 0.55
58 19 0.40
59 2 0.04
ACGTcount: A:0.25, C:0.33, G:0.14, T:0.28
Consensus pattern (58 bp):
TATGGCCCATCTAGCCCAATTCACGTTCATATGGCCCATTAGACCCAAATCACATTCC
Found at i:37869458 original size:30 final size:30
Alignment explanation
Indices: 37869424--37869491 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
37869414 AAAATGTTGT
37869424 GGGAGAAATAATAAAATACTAGTTGATGGG
1 GGGAGAAATAATAAAATACTAGTTGATGGG
37869454 GGGAGAAATAATAAAATACTAGTTGATGGG
1 GGGAGAAATAATAAAATACTAGTTGATGGG
37869484 GGGAGAAA
1 GGGAGAAA
37869492 CAAAAGTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.44, C:0.03, G:0.32, T:0.21
Consensus pattern (30 bp):
GGGAGAAATAATAAAATACTAGTTGATGGG
Found at i:37872073 original size:48 final size:48
Alignment explanation
Indices: 37872011--37872195 Score: 307
Period size: 48 Copynumber: 3.9 Consensus size: 48
37872001 TATATATGTG
*
37872011 TGTGGTAAAGCCGAATAGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
37872059 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
37872107 TGTGGTAAAGCCGCATGGCTAGTGTGAAATATGTGTGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
37872155 TGTGGTAAAGTCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
37872196 GTGTGTATAT
Statistics
Matches: 129, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 129 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:37872386 original size:37 final size:37
Alignment explanation
Indices: 37872336--37872475 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
37872326 GGAAATATAT
* *
37872336 TCCGGGTAAGACCCGATGACTATGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
37872373 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
37872410 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
37872447 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
37872476 GGACTATTCG
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:37880357 original size:55 final size:55
Alignment explanation
Indices: 37880297--37880409 Score: 145
Period size: 55 Copynumber: 2.1 Consensus size: 55
37880287 CGAGCCTGCC
** * *
37880297 AAAACAACACAGGCGTGCGACATGCCCGTGTGGAAGAACCGTGGGCGAACTTGTT
1 AAAACAACACAGGCGTGCGACACACCCGTGTGGAACAACCGTGGGCGAACCTGTT
* ** * *
37880352 AAAACAACACGGGCGTTTGACACACCCGTGTGGAACACCCGTGGTCGAACCTGTT
1 AAAACAACACAGGCGTGCGACACACCCGTGTGGAACAACCGTGGGCGAACCTGTT
37880407 AAA
1 AAA
37880410 TTAACACGGG
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.30, C:0.26, G:0.27, T:0.17
Consensus pattern (55 bp):
AAAACAACACAGGCGTGCGACACACCCGTGTGGAACAACCGTGGGCGAACCTGTT
Found at i:37889391 original size:52 final size:52
Alignment explanation
Indices: 37889290--37889391 Score: 125
Period size: 52 Copynumber: 2.0 Consensus size: 52
37889280 ATATGTATGC
* * * * * *
37889290 GGCATCCGAGCTTGTTGAGTTGGTCTGGGTTCATGATGGATGTGTTACATAT
1 GGCATCCGAGCTCGTTAAGTTGGTCTGAGTTCATAATGGATGCGATACATAT
*
37889342 GGCATCTGAGCTCGTTAAGTTGGGTC-GAGTTCATAATGGATGCGATACAT
1 GGCATCCGAGCTCGTTAAGTT-GGTCTGAGTTCATAATGGATGCGATACAT
37889392 GTAATTGGGT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
52 38 0.90
53 4 0.10
ACGTcount: A:0.21, C:0.15, G:0.31, T:0.33
Consensus pattern (52 bp):
GGCATCCGAGCTCGTTAAGTTGGTCTGAGTTCATAATGGATGCGATACATAT
Found at i:37890602 original size:30 final size:30
Alignment explanation
Indices: 37890561--37890635 Score: 116
Period size: 30 Copynumber: 2.5 Consensus size: 30
37890551 CACAAGGGTA
*
37890561 GACACA-GGGCATGTATCTAGACTGTGTGT
1 GACACACGGGCATGTATCTAGACCGTGTGT
*
37890590 GACACACGGGCATGTATCTAGGCCGTGTGT
1 GACACACGGGCATGTATCTAGACCGTGTGT
*
37890620 GACACACAGGCATGTA
1 GACACACGGGCATGTA
37890636 CGGTCTGCCC
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 6 0.14
30 36 0.86
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (30 bp):
GACACACGGGCATGTATCTAGACCGTGTGT
Found at i:37892594 original size:45 final size:45
Alignment explanation
Indices: 37892544--37892631 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
37892534 AAACATGTGT
* *
37892544 CACATATATCATGAACTCAGACCATAACTCAGTGAGTTCAGATGC
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
*
37892589 CACATATATCATGAACTCAGACCACAACTTAATGAGTTCAGAT
1 CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
37892632 CACATAGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.25
Consensus pattern (45 bp):
CACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGATGC
Found at i:37901585 original size:21 final size:21
Alignment explanation
Indices: 37901561--37901628 Score: 57
Period size: 21 Copynumber: 3.1 Consensus size: 21
37901551 CTAGGAATTA
37901561 TTGTGATCTGAACTCATTGAG
1 TTGTGATCTGAACTCATTGAG
* ** *
37901582 TTGTGGTCTGAGTTCA-TGATA
1 TTGTGATCTGAACTCATTGA-G
37901603 TATGTGGCATCTGAACTCATTGAG
1 T-TGT-G-ATCTGAACTCATTGAG
37901627 TT
1 TT
37901629 ATGTCTAAGT
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
20 3 0.09
21 14 0.41
22 3 0.09
23 2 0.06
24 9 0.26
25 3 0.09
ACGTcount: A:0.22, C:0.13, G:0.25, T:0.40
Consensus pattern (21 bp):
TTGTGATCTGAACTCATTGAG
Found at i:37906812 original size:27 final size:29
Alignment explanation
Indices: 37906782--37906896 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 29
37906772 ACGCAAGAGC
*
37906782 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
37906809 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
37906838 ATATAATTTTCAGCTCGCACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* ** *
37906868 ATATATTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
37906897 GTACAATTTT
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
27 5 0.06
28 3 0.04
29 43 0.54
30 29 0.36
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:37906849 original size:30 final size:29
Alignment explanation
Indices: 37906794--37906896 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
37906784 ATAGTGAATC
37906794 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
37906823 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
37906853 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
37906882 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37906897 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:37906886 original size:59 final size:60
Alignment explanation
Indices: 37906793--37906926 Score: 207
Period size: 59 Copynumber: 2.2 Consensus size: 60
37906783 TATAGTGAAT
* * *
37906793 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
* * *
37906852 TCGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
37906912 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
37906927 CAATCTTGTC
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 47 0.70
60 20 0.30
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (60 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
Found at i:37908263 original size:19 final size:18
Alignment explanation
Indices: 37908239--37908274 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37908229 CCCCCTTTTT
*
37908239 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
37908258 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
37908275 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:37914520 original size:27 final size:29
Alignment explanation
Indices: 37914490--37914604 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 29
37914480 ACGCAAGAGC
*
37914490 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
37914517 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
37914546 ATATAATTTTCAGCTCGCACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* ** *
37914576 ATATATTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
37914605 GTACAATTTT
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
27 5 0.06
28 3 0.04
29 43 0.54
30 29 0.36
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:37914557 original size:30 final size:29
Alignment explanation
Indices: 37914502--37914604 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
37914492 ATAGTGAATC
37914502 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
37914531 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
37914561 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
37914590 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37914605 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:37914594 original size:59 final size:60
Alignment explanation
Indices: 37914501--37914634 Score: 207
Period size: 59 Copynumber: 2.2 Consensus size: 60
37914491 TATAGTGAAT
* * *
37914501 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
* * *
37914560 TCGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
37914620 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
37914635 CAATCTTGTC
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 47 0.70
60 20 0.30
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (60 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
Found at i:37915975 original size:19 final size:18
Alignment explanation
Indices: 37915951--37915986 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37915941 CCCCCTTTTT
*
37915951 CTTTTCTTATTTTATTCCC
1 CTTTTCTT-TTTAATTCCC
37915970 CTTTTCTTTTTAATTCC
1 CTTTTCTTTTTAATTCC
37915987 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.11, C:0.25, G:0.00, T:0.64
Consensus pattern (18 bp):
CTTTTCTTTTTAATTCCC
Found at i:37916496 original size:40 final size:40
Alignment explanation
Indices: 37916441--37916620 Score: 247
Period size: 40 Copynumber: 4.5 Consensus size: 40
37916431 TATTCGGATG
* * *
37916441 ATATCCGGGCTAAGTCCAGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
37916481 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* **
37916521 ATATCCGGGTTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
37916561 ATAGCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
37916601 ATATCC-GGCTAAATCCCGAA
1 ATATCCGGGCTAAGTCCCGAA
37916621 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 12 0.10
40 110 0.89
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:37924645 original size:40 final size:40
Alignment explanation
Indices: 37924590--37924770 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
37924580 TATTCTGATG
* *
37924590 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
37924630 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
37924670 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
37924710 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
37924750 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
37924771 ATACTTGGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.10
40 115 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:37926948 original size:40 final size:39
Alignment explanation
Indices: 37926889--37927052 Score: 181
Period size: 40 Copynumber: 4.2 Consensus size: 39
37926879 TCGGAAACAA
* * *
37926889 CCGGATATAACCACATGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATAGAA-CACTTGCACGAATGCCTTCGGGTCTTAGC
* *
37926929 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATAGAAC-ACTTGCACGAATGCCTTCGGGTCTTAGC
**
37926969 CCGGATTTAACAACTTGCACGAATGCCTT-GGGTCTTAGC
1 CCGGATAGAAC-ACTTGCACGAATGCCTTCGGGTCTTAGC
* * *
37927008 CCGGATAG-TCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATAGAACACTTGCACGAA-TGCCTTCGGGTCTTAGC
37927046 CCGGATA
1 CCGGATA
37927053 TCATTCAATT
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
36 2 0.02
37 13 0.12
38 17 0.16
39 16 0.15
40 58 0.55
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CCGGATAGAACACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:37927049 original size:77 final size:80
Alignment explanation
Indices: 37926889--37927053 Score: 228
Period size: 77 Copynumber: 2.1 Consensus size: 80
37926879 TCGGAAACAA
* *
37926889 CCGGATATAACCACATGCACGAATGCCTTCAGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATATAACAACATGCACGAATGCCTTCAGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
*
37926954 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * * *
37926969 CCGGATTTAACAACTTGCACGAATGCCTT-GGGTCTTAGCCCGGATAG-TC-ACTAGCACAATTG
1 CCGGATATAACAACATGCACGAATGCCTTCAGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
*
37927031 CCTTCGGGTCTTAAC
66 CCTTCGGGTATTAAC
37927046 CCGGATAT
1 CCGGATAT
37927054 CATTCAATTG
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
77 31 0.41
78 1 0.01
79 17 0.23
80 26 0.35
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACATGCACGAATGCCTTCAGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:37934886 original size:40 final size:40
Alignment explanation
Indices: 37934841--37935006 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
37934831 CGGAATACAA
*
37934841 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
37934881 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
37934921 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
37934961 CCGGATAGT---CACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATA-TAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
37934999 CCGGATAT
1 CCGGATAT
37935007 CATTCAATTG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
37 3 0.03
38 30 0.27
40 76 0.69
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:37947559 original size:93 final size:93
Alignment explanation
Indices: 37947447--37947619 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
37947437 CGCCCATAAG
* *
37947447 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37947512 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
37947540 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37947605 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
37947620 ATCCTAGTGA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:37947615 original size:46 final size:46
Alignment explanation
Indices: 37947440--37947615 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
37947430 TGTAACCCGC
* * * *
37947440 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
37947486 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
*
37947536 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
37947579 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
37947616 TGCCATCCTA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:37950093 original size:15 final size:15
Alignment explanation
Indices: 37949990--37950084 Score: 122
Period size: 15 Copynumber: 6.4 Consensus size: 15
37949980 CAAAGATAAC
*
37949990 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
37950004 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
37950019 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
37950034 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
37950049 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
37950064 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
37950079 AAGAAA
1 AAGAAA
37950085 CCCAAGATAC
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
14 9 0.13
15 60 0.86
16 1 0.01
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:37953117 original size:47 final size:49
Alignment explanation
Indices: 37952997--37953174 Score: 196
Period size: 45 Copynumber: 3.8 Consensus size: 49
37952987 TGTAACCCGC
* *
37952997 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
* *
37953042 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * * *
37953092 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTTGGA---CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
37953135 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
37953175 TCAACCATCC
Statistics
Matches: 110, Mismatches: 12, Indels: 18
0.79 0.09 0.13
Matches are distributed among these distances:
43 6 0.05
44 2 0.02
45 35 0.32
46 28 0.25
47 29 0.26
48 3 0.03
49 1 0.01
50 6 0.05
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:37953162 original size:93 final size:92
Alignment explanation
Indices: 37953004--37953174 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 92
37952994 CGCCCATAAG
* *
37953004 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCATGAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGTTGCATCCATAAGTGAACTCGGACTCAACTCAA
37953069 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
* * *
37953096 CGAACTCGGACTCAACTCAACGAGTTTGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGAC-GTTGCATCCATAAGTGAACTCGGACTCAACTCA
37953161 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
37953175 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 28 0.38
93 45 0.62
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGTTGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:37953190 original size:46 final size:45
Alignment explanation
Indices: 37953005--37953182 Score: 157
Period size: 46 Copynumber: 3.9 Consensus size: 45
37952995 GCCCATAAGC
* ** * * *
37953005 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCATGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTGCAACCATTAGT
** *
37953050 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATG-CT-GCAACCAT-T-AGT
* * * *
37953097 GAACTCGGACTCAACTCAACGAGTTTGGACAT-TTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTGCAACCATTAGT
37953143 GAACTCGGACTCAACTCAACGAGTTCGGATGCT-CAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTGCAACCAT
37953183 CCTAGTGACA
Statistics
Matches: 105, Mismatches: 19, Indels: 19
0.73 0.13 0.13
Matches are distributed among these distances:
44 8 0.08
45 30 0.29
46 32 0.30
47 32 0.30
48 1 0.01
49 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTGCAACCATTAGT
Found at i:37955502 original size:26 final size:26
Alignment explanation
Indices: 37955473--37955524 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
37955463 GCTTGCTTAG
*
37955473 CCTCTCCCTCGTGGCTACTCAACTAC
1 CCTCTCCATCGTGGCTACTCAACTAC
*
37955499 CCTCTCCATCGTGGCTACTTAACTAC
1 CCTCTCCATCGTGGCTACTCAACTAC
37955525 TACTCGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.17, C:0.42, G:0.12, T:0.29
Consensus pattern (26 bp):
CCTCTCCATCGTGGCTACTCAACTAC
Found at i:37959088 original size:30 final size:30
Alignment explanation
Indices: 37959033--37959192 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
37959023 ATAGTGAATC
37959033 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
37959062 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
37959092 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
37959121 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
37959149 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
37959179 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37959193 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:37959125 original size:59 final size:57
Alignment explanation
Indices: 37959033--37959192 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
37959023 ATAGTGAATC
*
37959033 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
37959092 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
37959149 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
37959193 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:37963224 original size:42 final size:41
Alignment explanation
Indices: 37963154--37963285 Score: 140
Period size: 44 Copynumber: 3.1 Consensus size: 41
37963144 TCTCACATGT
*
37963154 AATCAAATATCGATGCCACTGTCCCAGACAAAGTCTTACACAA
1 AATCAAATA-CGATGCCA-TGTCCCAGACATAGTCTTACACAA
* * *
37963197 AATCAAATACGATGCCGATGTCTCAGACATGGTCTTACACGTA
1 AATCAAATACGATGCC-ATGTCCCAGACATAGTCTTACAC-AA
* *
37963240 AATCTTGAAT-CGATGCCAACGTCCCAGACATAGTCTTACACAA
1 AATC--AAATACGATGCC-ATGTCCCAGACATAGTCTTACACAA
37963283 AAT
1 AAT
37963286 TACACATCGG
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
42 26 0.35
43 19 0.25
44 27 0.36
45 3 0.04
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.23
Consensus pattern (41 bp):
AATCAAATACGATGCCATGTCCCAGACATAGTCTTACACAA
Found at i:37981062 original size:21 final size:21
Alignment explanation
Indices: 37981032--37981108 Score: 66
Period size: 21 Copynumber: 3.5 Consensus size: 21
37981022 TTAGAAATTA
*
37981032 TTGTGATCTGAACTCATTGAG
1 TTGTGGTCTGAACTCATTGAG
** *
37981053 TTGTGGTCTGAGTTCA-TGATA
1 TTGTGGTCTGAACTCATTGA-G
37981074 TATGTGGCATCTGAACTCATTGAG
1 T-TGTGG--TCTGAACTCATTGAG
*
37981098 TTATGGTCTGA
1 TTGTGGTCTGA
37981109 GTTCATGATA
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
20 3 0.07
21 19 0.44
22 5 0.12
23 4 0.09
24 9 0.21
25 3 0.07
ACGTcount: A:0.22, C:0.13, G:0.26, T:0.39
Consensus pattern (21 bp):
TTGTGGTCTGAACTCATTGAG
Found at i:37981087 original size:24 final size:22
Alignment explanation
Indices: 37981054--37981124 Score: 67
Period size: 21 Copynumber: 3.2 Consensus size: 22
37981044 CTCATTGAGT
37981054 TGTGGTCTGAGTTCATGATATA
1 TGTGGTCTGAGTTCATGATATA
**
37981076 TGTGGCATCTGAACTCATTGAGT-TA
1 TGTGG--TCTGAGTTCA-TGA-TATA
37981101 --TGGTCTGAGTTCATGATATA
1 TGTGGTCTGAGTTCATGATATA
37981121 TGTG
1 TGTG
37981125 ACACATGTCT
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
19 1 0.03
20 5 0.13
21 8 0.21
22 7 0.18
23 3 0.08
24 8 0.21
25 5 0.13
26 1 0.03
ACGTcount: A:0.23, C:0.11, G:0.27, T:0.39
Consensus pattern (22 bp):
TGTGGTCTGAGTTCATGATATA
Found at i:37981105 original size:45 final size:45
Alignment explanation
Indices: 37981037--37981124 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
37981027 AATTATTGTG
*
37981037 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGGC
1 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGGC
37981082 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTG
1 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTG
37981125 ACACATGTCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.24, C:0.12, G:0.25, T:0.39
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATATATGTGGC
Found at i:37993327 original size:38 final size:38
Alignment explanation
Indices: 37993276--37993353 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
37993266 ATAAGGAAAA
37993276 GATATGAAGCCTACCTTGCATTTGTACTGAACACTAAG
1 GATATGAAGCCTACCTTGCATTTGTACTGAACACTAAG
37993314 GATATGAAGCCTACCTTGCATTTGTACTGAACACTAAG
1 GATATGAAGCCTACCTTGCATTTGTACTGAACACTAAG
37993352 GA
1 GA
37993354 AACAGAGCTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (38 bp):
GATATGAAGCCTACCTTGCATTTGTACTGAACACTAAG
Found at i:37998735 original size:321 final size:320
Alignment explanation
Indices: 37998139--37998764 Score: 1085
Period size: 321 Copynumber: 2.0 Consensus size: 320
37998129 TATCCTGAAA
* *
37998139 TAGGGCTTAATCGAAATAGTGGTTTCGTGACCACAAATCCGAGATAGAAATAATTATTTTATAAT
1 TAGGGCCTAATCGAAATAGTGGTTTCATGACCACAAATCCGAGATAGAAATAATTATTTTATAAT
*
37998204 TATTTTGATGATTATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTA
66 TATTTTGAGGATTATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTA
*
37998269 AAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAACTTGCATTCTAGAAGTTTT
131 AAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTACAAAACTTGCATTCTAGAAGTTTT
37998334 TAGTATGAAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGAAATTTGACCAATTTTAAGT
196 TAGTATGAAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGAAATTTGACCAATTTTAAGT
37998399 TCATGAACAAAATTAGGACATGGAAGGAATTTTTGGAAAGTTTAGTTGTGACAACCCAAAT
261 TCATGAACAAAATTAGGACATGGAAGGAATTTTT-GAAAGTTTAGTTGTGACAACCCAAAT
* *
37998460 TAGGGCCTAATCGGAATAGTGGTTTCATGACCACAAAGT-CGAGATAGAAATAATTGTTTTATAA
1 TAGGGCCTAATCGAAATAGTGGTTTCATGACCACAAA-TCCGAGATAGAAATAATTATTTTATAA
* * *
37998524 TTATTTTGGGGTTTATGATATGATTGCATGATTTTGTGAAAATTTCGTGATGAAATTCTATGCCT
65 TTATTTTGAGGATTATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCT
* *
37998589 AAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTACAAAATTTGCA-TCTCGGAAGTT
130 AAAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTACAAAACTTGCATTCT-AGAAGTT
* *
37998653 TTTAGTATGAAATTGTTTTGGAATATTAATTAGGAGGTCTTAAATAGCAATTTGACCAATTTTAA
194 TTTAGTATGAAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGAAATTTGACCAATTTTAA
*
37998718 GTTCATGGACAAAATTAGGACATGGAAGGAATTTTTGAAAGTTTAGT
259 GTTCATGAACAAAATTAGGACATGGAAGGAATTTTTGAAAGTTTAGT
37998765 AAGGAGGGGC
Statistics
Matches: 289, Mismatches: 14, Indels: 5
0.94 0.05 0.02
Matches are distributed among these distances:
320 14 0.05
321 274 0.95
322 1 0.00
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.35
Consensus pattern (320 bp):
TAGGGCCTAATCGAAATAGTGGTTTCATGACCACAAATCCGAGATAGAAATAATTATTTTATAAT
TATTTTGAGGATTATGATATGATTGCATGATTGTGTGAAAATTTCGTGATGAAATTCTATGCCTA
AAGTGCTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTACAAAACTTGCATTCTAGAAGTTTT
TAGTATGAAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGAAATTTGACCAATTTTAAGT
TCATGAACAAAATTAGGACATGGAAGGAATTTTTGAAAGTTTAGTTGTGACAACCCAAAT
Found at i:37999823 original size:71 final size:71
Alignment explanation
Indices: 37999734--37999897 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
37999724 GAGATGTATC
*
37999734 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTTGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37999799 AGGACA
66 AGGACA
37999805 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
37999870 AGGACA
66 AGGACA
37999876 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
37999898 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.20
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:38005373 original size:40 final size:40
Alignment explanation
Indices: 38005304--38005469 Score: 253
Period size: 40 Copynumber: 4.2 Consensus size: 40
38005294 AACCCAAGTA
* **
38005304 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
38005343 CCTTCAGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
38005383 CCTTCGGGACTCAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
38005423 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
38005463 CCTTCGG
1 CCTTCGG
38005470 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 12 0.10
40 104 0.90
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:38016316 original size:23 final size:23
Alignment explanation
Indices: 38016289--38016336 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
38016279 TTCATTAGGA
38016289 TTAATGTTGGACTAAGCTATTAG
1 TTAATGTTGGACTAAGCTATTAG
* *
38016312 TTAATGTTTGACTAAGCTTTTAG
1 TTAATGTTGGACTAAGCTATTAG
38016335 TT
1 TT
38016337 TTAATTGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.27, C:0.08, G:0.19, T:0.46
Consensus pattern (23 bp):
TTAATGTTGGACTAAGCTATTAG
Found at i:38016771 original size:25 final size:25
Alignment explanation
Indices: 38016743--38016791 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
38016733 TTATTTTGAC
*
38016743 TTTTCTTCTCCCAATTAAACTCTAT
1 TTTTATTCTCCCAATTAAACTCTAT
* * *
38016768 TTTTATTTTTCCACTTAAACTCTA
1 TTTTATTCTCCCAATTAAACTCTA
38016792 ACTAACCTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.51
Consensus pattern (25 bp):
TTTTATTCTCCCAATTAAACTCTAT
Found at i:38023339 original size:26 final size:26
Alignment explanation
Indices: 38023310--38023417 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
38023300 TGGTACAAAT
38023310 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
38023336 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
38023362 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
38023388 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
38023414 TGAT
1 TGAT
38023418 GAGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:38025065 original size:27 final size:26
Alignment explanation
Indices: 38025027--38025160 Score: 151
Period size: 27 Copynumber: 5.0 Consensus size: 26
38025017 AAGCGTCCTA
*
38025027 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGATCTG
* *
38025054 GTGGCTCTGCCACATATATCTGTTCAG
1 GTGGCTCTGCCACAT-TATCTGATCTG
* *
38025081 GTGACTATGCCACGATTATCTGATCTG
1 GTGGCTCTGCCAC-ATTATCTGATCTG
*
38025108 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGATCTG
* *
38025135 GTGGCTCTACCACAATATCTGTATCT
1 GTGGCTCTGCCACATTATCTG-ATCT
38025161 AGTGACTTCG
Statistics
Matches: 90, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 10 0.11
27 78 0.87
28 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGATCTG
Done.