Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 137 of 425
Found at i:41296598 original size:24 final size:25
Alignment explanation
Indices: 41296570--41296626 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 25
41296560 ACTATGAGAA
41296570 ATTTTTTTAA-AT-TTAAAATTTTA-
1 ATTTTTTTAATATGTT-AAATTTTAT
*
41296593 ATTTTTCTAATATGTTAAATTTTAT
1 ATTTTTTTAATATGTTAAATTTTAT
41296618 ATTCTTTTT
1 ATT-TTTTT
41296627 TAATTTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 9 0.32
24 10 0.36
25 5 0.18
26 4 0.14
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (25 bp):
ATTTTTTTAATATGTTAAATTTTAT
Found at i:41297550 original size:19 final size:19
Alignment explanation
Indices: 41297512--41297552 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
41297502 TAGATATATT
*
41297512 TTATAATTTTTAATATAAA
1 TTATAATTTTTAATAAAAA
**
41297531 TTATAATTTTTTTTAAAAA
1 TTATAATTTTTAATAAAAA
41297550 TTA
1 TTA
41297553 ATGATGACGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TTATAATTTTTAATAAAAA
Found at i:41303639 original size:7 final size:7
Alignment explanation
Indices: 41303627--41303658 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
41303617 TTGCAGGATA
41303627 AAAAAAT
1 AAAAAAT
41303634 AAAAAAT
1 AAAAAAT
41303641 AAAAAAT
1 AAAAAAT
41303648 -AAAAAT
1 AAAAAAT
41303654 AAAAA
1 AAAAA
41303659 TAAGTTACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.25
7 18 0.75
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:41303644 original size:6 final size:6
Alignment explanation
Indices: 41303628--41303661 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
41303618 TGCAGGATAA
41303628 AAAAAT AAAAAAT AAAAAAT AAAAAT AAAAAT AA
1 AAAAAT -AAAAAT -AAAAAT AAAAAT AAAAAT AA
41303662 GTTACTGAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 14 0.52
7 13 0.48
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:41303646 original size:14 final size:13
Alignment explanation
Indices: 41303627--41303658 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
41303617 TTGCAGGATA
41303627 AAAAAATAAAAAAT
1 AAAAAAT-AAAAAT
41303641 AAAAAATAAAAAT
1 AAAAAATAAAAAT
41303654 AAAAA
1 AAAAA
41303659 TAAGTTACTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:41307960 original size:26 final size:28
Alignment explanation
Indices: 41307931--41307999 Score: 97
Period size: 26 Copynumber: 2.5 Consensus size: 28
41307921 ATAGTGAGTC
*
41307931 CGCACACTTAGTGCTATA-AATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
41307957 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
41307985 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41308000 GTACAAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 17 0.46
27 4 0.11
28 16 0.43
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:41307977 original size:28 final size:27
Alignment explanation
Indices: 41307931--41307999 Score: 79
Period size: 28 Copynumber: 2.6 Consensus size: 27
41307921 ATAGTGAGTC
*
41307931 CGCACACTTAGTGC-TATAAATC-AGCT
1 CGCACACTTAGTGCTTAT-AATCAAACT
* *
41307957 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCT-TATAATCAAACT
41307985 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41308000 GTACAAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 13 0.36
27 4 0.11
28 19 0.53
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATCAAACT
Found at i:41308066 original size:42 final size:42
Alignment explanation
Indices: 41308007--41308114 Score: 207
Period size: 42 Copynumber: 2.6 Consensus size: 42
41307997 GCTGTACAAA
*
41308007 ATTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCC
1 ATTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCC
41308049 ATTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCC
1 ATTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCC
41308091 ATTTATACCCGCACACTTAGTGCC
1 ATTTATACCCGCACACTTAGTGCC
41308115 GAGACCAATA
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.30
Consensus pattern (42 bp):
ATTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCC
Found at i:41310563 original size:38 final size:38
Alignment explanation
Indices: 41310521--41310598 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
41310511 TTTAAACAAG
41310521 TAATCAACTAACTCATACCTGATTGTTTTAGCTCGTTT
1 TAATCAACTAACTCATACCTGATTGTTTTAGCTCGTTT
41310559 TAATCAACTAACTCATACCTGATTGTTTTAGCTCGTTT
1 TAATCAACTAACTCATACCTGATTGTTTTAGCTCGTTT
41310597 TA
1 TA
41310599 CACCTTCATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (38 bp):
TAATCAACTAACTCATACCTGATTGTTTTAGCTCGTTT
Found at i:41310894 original size:45 final size:45
Alignment explanation
Indices: 41310680--41310894 Score: 174
Period size: 45 Copynumber: 4.9 Consensus size: 45
41310670 ATATCATAAA
* * * * * *
41310680 ATGCCAACGTCCCAGACGTGGTCTTATATGATATCTCATAT-T-G
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATCG
* * * *
41310723 ATGCC-ACTATCCCAGACAGGGTCTTACTCG-AATCA-A-ATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAAACACATATATCG
* ** * * * *
41310764 ATGCCAATGTCTTAGACATGGTCTTACATGTAACCACATAGATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATCG
* * * *
41310809 ATGCCAACGTCCCAGACGTGGTTTTACACAAAAATACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATCG
*
41310854 ATGCCAACGTCCCAGTCATGGTCTTACACGAAAACACATAT
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATAT
41310895 CAGAATCCTG
Statistics
Matches: 131, Mismatches: 33, Indels: 14
0.74 0.19 0.08
Matches are distributed among these distances:
40 2 0.02
41 23 0.18
42 10 0.08
43 22 0.17
44 2 0.02
45 72 0.55
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (45 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAAACACATATATCG
Found at i:41313632 original size:23 final size:22
Alignment explanation
Indices: 41313552--41313633 Score: 69
Period size: 22 Copynumber: 3.6 Consensus size: 22
41313542 AATGAGCAGA
*
41313552 TAAA-AGTAAGCTCGATTGAGC
1 TAAATAGTAAGCTCTATTGAGC
** *
41313573 TGGAAACGGGAAGCTCTATTGAGC
1 T--AAATAGTAAGCTCTATTGAGC
41313597 TAAATAGTAAGCTCT-TTCGAGC
1 TAAATAGTAAGCTCTATT-GAGC
*
41313619 TGAATCAGTAAGCTC
1 TAAAT-AGTAAGCTC
41313634 ATACAAGCTA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
21 3 0.06
22 19 0.39
23 12 0.24
24 15 0.31
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (22 bp):
TAAATAGTAAGCTCTATTGAGC
Found at i:41313642 original size:23 final size:22
Alignment explanation
Indices: 41313594--41313643 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
41313584 AGCTCTATTG
* * *
41313594 AGCTAAATAGTAAGCTCTTTCG
1 AGCTAAATAGTAAGCTCATACA
*
41313616 AGCTGAATCAGTAAGCTCATACA
1 AGCTAAAT-AGTAAGCTCATACA
41313639 AGCTA
1 AGCTA
41313644 TGGTGAGTCC
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (22 bp):
AGCTAAATAGTAAGCTCATACA
Found at i:41316717 original size:43 final size:44
Alignment explanation
Indices: 41316632--41316717 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 44
41316622 TATATTGTAC
* * * *
41316632 ATTGGCACTAAATGTGCGAGACTGAGATAGCTTCGGCTAAATAT
1 ATTGGAACTAAATGTGCGAGACTCAGATAGATTCAGCTAAATAT
41316676 ATTGGAACTAAATGTGCGAGAC-CAGATAGATTCAGCTAAATA
1 ATTGGAACTAAATGTGCGAGACTCAGATAGATTCAGCTAAATA
41316718 CGTTGGCACT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
43 17 0.45
44 21 0.55
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (44 bp):
ATTGGAACTAAATGTGCGAGACTCAGATAGATTCAGCTAAATAT
Found at i:41316729 original size:43 final size:44
Alignment explanation
Indices: 41316629--41316734 Score: 142
Period size: 43 Copynumber: 2.4 Consensus size: 44
41316619 ATATATATTG
* * *
41316629 TACATTGGCACTAAATGTGCGAGACTGAGATAGCTTCGGCTAAA
1 TACATTGGCACTAAATGTGCGAGACTCAGATAGATTCAGCTAAA
* *
41316673 TATATTGGAACTAAATGTGCGAGAC-CAGATAGATTCAGCTAAA
1 TACATTGGCACTAAATGTGCGAGACTCAGATAGATTCAGCTAAA
* *
41316716 TACGTTGGCACTAAGTGTG
1 TACATTGGCACTAAATGTG
41316735 TAAGATCAGA
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
43 30 0.57
44 23 0.43
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (44 bp):
TACATTGGCACTAAATGTGCGAGACTCAGATAGATTCAGCTAAA
Found at i:41316745 original size:43 final size:43
Alignment explanation
Indices: 41316629--41316746 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
41316619 ATATATATTG
* * *
41316629 TACATTGGCACTAAATGTGCGAGACTGAGATAGCTTCGGCTAAA
1 TACATTGGCACTAAATGTGCGAGA-TCAGATAGATTCAGCTAAA
* * *
41316673 TATATTGGAACTAAATGTGCGAGACCAGATAGATTCAGCTAAA
1 TACATTGGCACTAAATGTGCGAGATCAGATAGATTCAGCTAAA
* * **
41316716 TACGTTGGCACTAAGTGTGTAAGATCAGATA
1 TACATTGGCACTAAATGTGCGAGATCAGATA
41316747 ACGTTCGCTA
Statistics
Matches: 61, Mismatches: 13, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
43 39 0.64
44 22 0.36
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (43 bp):
TACATTGGCACTAAATGTGCGAGATCAGATAGATTCAGCTAAA
Found at i:41324365 original size:21 final size:21
Alignment explanation
Indices: 41324333--41324383 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
41324323 AGCCTGTAAT
41324333 ATAAAC-AATAATAATAATAG
1 ATAAACAAATAATAATAATAG
*
41324353 ATAAATAAATAATAATAATAG
1 ATAAACAAATAATAATAATAG
*
41324374 GTAAACAAAT
1 ATAAACAAAT
41324384 TCGAAGAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 5 0.19
21 22 0.81
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.25
Consensus pattern (21 bp):
ATAAACAAATAATAATAATAG
Found at i:41325028 original size:13 final size:13
Alignment explanation
Indices: 41325010--41325034 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41325000 TGTGGGTGCA
41325010 CACGGCCGTGTCG
1 CACGGCCGTGTCG
41325023 CACGGCCGTGTC
1 CACGGCCGTGTC
41325035 TGGCGTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.36, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTCG
Found at i:41330198 original size:570 final size:570
Alignment explanation
Indices: 41329119--41330262 Score: 2180
Period size: 570 Copynumber: 2.0 Consensus size: 570
41329109 GCAGTATTTG
41329119 GACCGGTTCGTGGTTGTGTTTATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGC
1 GACCGGTTCGTGGTTGTGTTTATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGC
* *
41329184 TGAGTACCTGAGGTTAGTGTTGCAAATTTTACGGGATAAGCAGTTATATGCTAAGTTCAGTAAGT
66 TGAGCACCTGAGATTAGTGTTGCAAATTTTACGGGATAAGCAGTTATATGCTAAGTTCAGTAAGT
*
41329249 GTGAGTTCTGGTTAAGAGAGGTTAGCTTCTTGGGCCATGTGGTATCTGCATCGGGTATTCGAGTT
131 GTGAGTTCTAGTTAAGAGAGGTTAGCTTCTTGGGCCATGTGGTATCTGCATCGGGTATTCGAGTT
* *
41329314 GATCCGAGCAAAATTTCAGCCATACTTAATTGGAAGCCTCCGAGAAATATTACTGAGGTTCGGAG
196 GATCCGAGCAAAATTTCAGCCATACTTAACTGGAAGCCTCCGAGAAATATTACTGAGGTTCAGAG
*
41329379 CTTTTTGGGACTTGCCGGTTACTACCGACTGTTTGTGAAAGGTTTCTCGATGATAGCCACACCGA
261 CTTTTTGGGACTTGCCGGTTACTACCGACGGTTTGTGAAAGGTTTCTCGATGATAGCCACACCGA
41329444 TGACGAAACTACTTCAGAAGGATGTTAAGTTTGAATGGACAGAAAAGTGTCAGAAAAGTTTCGAA
326 TGACGAAACTACTTCAGAAGGATGTTAAGTTTGAATGGACAGAAAAGTGTCAGAAAAGTTTCGAA
41329509 CAATTGAAAACGCACTTAACGGAAGCTCCAGTACTAGTGCAGCCCGAATCAGGCAAGGAGTTCGT
391 CAATTGAAAACGCACTTAACGGAAGCTCCAGTACTAGTGCAGCCCGAATCAGGCAAGGAGTTCGT
*
41329574 CATTTATAGTGATGCATCCCTACTTGGGTTGGGTTGCGTATTGATGCAAGAAGGTCGAGTTGTGG
456 CATTTATAGTGATGCATCCCGACTTGGGTTGGGTTGCGTATTGATGCAAGAAGGTCGAGTTGTGG
* * *
41329639 CCTATGCGTCGAGACAATTAAAGCCATATGAGAAAAATTATCTGACCTAT
521 CCTATGCGTCGAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCAT
41329689 GACCGGTTCGTGGTTGTGTTTATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGC
1 GACCGGTTCGTGGTTGTGTTTATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGC
41329754 TGAGCACCTGAGATTAGTGTTGCAAATTTTACGGGATAAGCAGTTATATGCTAAGTTCAGTAAGT
66 TGAGCACCTGAGATTAGTGTTGCAAATTTTACGGGATAAGCAGTTATATGCTAAGTTCAGTAAGT
41329819 GTGAGTTCTAGTTAAGAGAGGTTAGCTTCTTGGGCCATGTGGTATCTGCATCGGGTATTCGAGTT
131 GTGAGTTCTAGTTAAGAGAGGTTAGCTTCTTGGGCCATGTGGTATCTGCATCGGGTATTCGAGTT
* *
41329884 GATCCGTGCAAAATTTCAGCCATACTTAACTGGAAGCCTTCGAGAAATATTACTGAGGTTCAGAG
196 GATCCGAGCAAAATTTCAGCCATACTTAACTGGAAGCCTCCGAGAAATATTACTGAGGTTCAGAG
41329949 CTTTTTGGGACTTGCCGGTTACTACCGACGGTTTGTGAAAGGTTTCTCGATGATAGCCACACCGA
261 CTTTTTGGGACTTGCCGGTTACTACCGACGGTTTGTGAAAGGTTTCTCGATGATAGCCACACCGA
41330014 TGACGAAACTACTTCAGAAGGATGTTAAGTTTGAATGGACAGAAAAGTGTCAGAAAAGTTTCGAA
326 TGACGAAACTACTTCAGAAGGATGTTAAGTTTGAATGGACAGAAAAGTGTCAGAAAAGTTTCGAA
41330079 CAATTGAAAACGCACTTAACGGAAGCTCCAGTACTAGTGCAGCCCGAATCAGGCAAGGAGTTCGT
391 CAATTGAAAACGCACTTAACGGAAGCTCCAGTACTAGTGCAGCCCGAATCAGGCAAGGAGTTCGT
41330144 CATTTATAGTGATGCATCCCGACTTGGGTTGGGTTGCGTATTGATGCAAGAAGGTCGAGTTGTGG
456 CATTTATAGTGATGCATCCCGACTTGGGTTGGGTTGCGTATTGATGCAAGAAGGTCGAGTTGTGG
41330209 CCTATGCGTCGAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCAT
521 CCTATGCGTCGAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCAT
41330259 GACC
1 GACC
41330263 TCGTACTAGC
Statistics
Matches: 562, Mismatches: 12, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
570 562 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (570 bp):
GACCGGTTCGTGGTTGTGTTTATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGC
TGAGCACCTGAGATTAGTGTTGCAAATTTTACGGGATAAGCAGTTATATGCTAAGTTCAGTAAGT
GTGAGTTCTAGTTAAGAGAGGTTAGCTTCTTGGGCCATGTGGTATCTGCATCGGGTATTCGAGTT
GATCCGAGCAAAATTTCAGCCATACTTAACTGGAAGCCTCCGAGAAATATTACTGAGGTTCAGAG
CTTTTTGGGACTTGCCGGTTACTACCGACGGTTTGTGAAAGGTTTCTCGATGATAGCCACACCGA
TGACGAAACTACTTCAGAAGGATGTTAAGTTTGAATGGACAGAAAAGTGTCAGAAAAGTTTCGAA
CAATTGAAAACGCACTTAACGGAAGCTCCAGTACTAGTGCAGCCCGAATCAGGCAAGGAGTTCGT
CATTTATAGTGATGCATCCCGACTTGGGTTGGGTTGCGTATTGATGCAAGAAGGTCGAGTTGTGG
CCTATGCGTCGAGACAATTAAAGCCACATGAGAAAAATTATCCGACCCAT
Found at i:41333675 original size:38 final size:39
Alignment explanation
Indices: 41333607--41333787 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
41333597 TCGATTGATA
* **
41333607 ACCGGGCTAAGTCCCAAAGGCATTCGTGCGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
41333646 ACCGGGCTAAGT-CCGAAGGCATTTATGCGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
* * *
41333684 ACCAGGTTAAGTCCCAAAGGCATTTATGCGAGTTATTCT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
* * * *
41333723 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
*
41333762 AACCGGGCTAAGTCTCGAAGGCATTT
1 -ACCGGGCTAAGTCCCGAAGGCATTT
41333788 GAGCTAGTGG
Statistics
Matches: 126, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 33 0.26
39 69 0.55
40 24 0.19
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTCT
Found at i:41333821 original size:39 final size:39
Alignment explanation
Indices: 41333604--41333821 Score: 106
Period size: 39 Copynumber: 5.6 Consensus size: 39
41333594 TATTCGATTG
* * * * * *
41333604 ATAACCGGGCTAAGTCCCAAAGGCATTCGTGCGAGTTATT
1 ATAACCGGGCTAACT-CCGAAGGCATTTGAGCGAGTCACT
* * * *
41333644 CT-ACCGGGCTAAGTCCGAAGGCATTT-ATGCGAGTTATT
1 ATAACCGGGCTAACTCCGAAGGCATTTGA-GCGAGTCACT
* * * * * * *
41333682 CT-ACCAGGTTAAGTCCCAAAGGCATTT-ATGCGAGTTATT
1 ATAACCGGGCTAACT-CCGAAGGCATTTGA-GCGAGTCACT
* * *
41333721 CT-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACT
1 ATAACCGGGCTAACT-CCGAAGGCATTTGAGCGAGTCACT
* * **
41333760 ATAACCGGGCTAAGTCTCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAACTC-CGAAGGCATTTGAGCGAGTCACT
*
41333800 ATATCC-GGCTAAACTCCGAAGG
1 ATAACCGGGCT-AACTCCGAAGG
41333822 TACTCGTTTG
Statistics
Matches: 152, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
38 32 0.21
39 79 0.52
40 41 0.27
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (39 bp):
ATAACCGGGCTAACTCCGAAGGCATTTGAGCGAGTCACT
Found at i:41342227 original size:43 final size:43
Alignment explanation
Indices: 41342100--41342234 Score: 146
Period size: 43 Copynumber: 3.1 Consensus size: 43
41342090 ATATATATTG
*
41342100 TACATTGGCACTAAGTGTGCGAGACTAAGATAGCTTCAGCTAAA
1 TACATTGGCACTAAGTGTGCGAGACTAA-ATAGCTTCGGCTAAA
* * * * * *
41342144 TATATTGGAACTAAATGTACGGGACTAGATAGCTTCGGCTAAA
1 TACATTGGCACTAAGTGTGCGAGACTAAATAGCTTCGGCTAAA
* * * *
41342187 TACATTGTCACTAAGTGTGCGAGA-TCAAATAACTTTGGCTATA
1 TACATTGGCACTAAGTGTGCGAGACT-AAATAGCTTCGGCTAAA
41342230 TACAT
1 TACAT
41342235 ATATTGGCAC
Statistics
Matches: 73, Mismatches: 17, Indels: 3
0.78 0.18 0.03
Matches are distributed among these distances:
42 1 0.01
43 50 0.68
44 22 0.30
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (43 bp):
TACATTGGCACTAAGTGTGCGAGACTAAATAGCTTCGGCTAAA
Found at i:41342323 original size:48 final size:48
Alignment explanation
Indices: 41342190--41342324 Score: 139
Period size: 48 Copynumber: 2.8 Consensus size: 48
41342180 GGCTAAATAC
* * * *
41342190 ATTGTCACTAAGTGTGCGAGA-TCAAATA-ACTTTGGCTATATACATAT
1 ATTGGCACTTAGTGTGCGAGATTGAAATAGA-TTTGGCTATATACACAT
* * * * ** *
41342237 ATTGGCACTTAGTGTACGTGATTGAGATAGCTCCGGCTATATATACAT
1 ATTGGCACTTAGTGTGCGAGATTGAAATAGATTTGGCTATATACACAT
*
41342285 ATTGGCACTTAGTGTGCGAGATTGATATAGATTTGGCTAT
1 ATTGGCACTTAGTGTGCGAGATTGAAATAGATTTGGCTAT
41342325 TTATTTGGCA
Statistics
Matches: 69, Mismatches: 17, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
47 17 0.25
48 52 0.75
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (48 bp):
ATTGGCACTTAGTGTGCGAGATTGAAATAGATTTGGCTATATACACAT
Found at i:41348817 original size:29 final size:29
Alignment explanation
Indices: 41348727--41348886 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
41348717 ACTCGATTTC
* * **
41348727 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
41348756 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
41348784 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
41348814 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
41348843 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
41348872 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
41348887 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:41356866 original size:29 final size:29
Alignment explanation
Indices: 41356776--41356935 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
41356766 ACTCGATTTC
* * **
41356776 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
41356805 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
41356833 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
41356863 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
41356892 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
41356921 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
41356936 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:41369647 original size:29 final size:29
Alignment explanation
Indices: 41369579--41369679 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
41369569 GTGACGAGAT
41369579 TGGCACTAAGTGTGCATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
41369607 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
41369636 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
41369665 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
41369680 GAGCTCGAAG
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
28 24 0.34
29 46 0.66
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:41369695 original size:29 final size:29
Alignment explanation
Indices: 41369579--41369739 Score: 107
Period size: 29 Copynumber: 5.6 Consensus size: 29
41369569 GTGACGAGAT
* *
41369579 TGGCACTAAGTGTGC-ATGCTGGAAA-ATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* * **
41369607 TGGCACTGAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
* **
41369636 TGGCACTAAGTGTGC-ATGCTGGAAATATA
1 TGGCACTAAGTGTGCGA-GCTCGAAACGTA
**
41369665 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGAGCTCGAAACGTA
** * * *
41369694 TGGCACTGTGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAA-CGTA
41369723 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
41369740 AATCGAGTAT
Statistics
Matches: 114, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
28 26 0.23
29 87 0.76
30 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTCGAAACGTA
Found at i:41369708 original size:58 final size:59
Alignment explanation
Indices: 41369575--41369700 Score: 179
Period size: 58 Copynumber: 2.2 Consensus size: 59
41369565 TACGGTGACG
* *
41369575 AGAT-TGGCACTAAGTGTGCATGCTGGAAA-ATATGGCACTGAGTGTGC-ATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
*
41369631 ATATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
* *
41369689 GGGTATGGCACT
1 AGATATGGCACT
41369701 GTGTGTGCGG
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
56 3 0.05
57 25 0.41
58 32 0.52
59 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (59 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAA
Found at i:41378846 original size:46 final size:46
Alignment explanation
Indices: 41378754--41378864 Score: 127
Period size: 46 Copynumber: 2.4 Consensus size: 46
41378744 TGATATGTGT
* ** *
41378754 GCTAGAGTAAGACATGTCTGAGACATACATCGGCCACGTTATGAGA
1 GCTAGTGTAAGACATGTCTGAGACATACATCGGCCACGAGACGAGA
* * *
41378800 G-TCAGTGTAAGACGTGTCTGAGACATGCATCGG-CATTGAGACGAGA
1 GCT-AGTGTAAGACATGTCTGAGACATACATCGGCCA-CGAGACGAGA
41378846 GCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCT
41378865 AGGATATGCA
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
45 3 0.06
46 50 0.93
47 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGAGACATACATCGGCCACGAGACGAGA
Found at i:41379028 original size:49 final size:50
Alignment explanation
Indices: 41378975--41379071 Score: 133
Period size: 49 Copynumber: 2.0 Consensus size: 50
41378965 GTATCAACAC
*
41378975 CGATAGATGAGAGCCAGTGTAAGACC-TGTCTAGGACACGGCATCGGCCT
1 CGATAGATGAAAGCCAGTGTAAGACCATGTCTAGGACACGGCATCGGCCT
* * * * *
41379024 CGATATATGAAAGTCAGTGTACGACCATGTCTGGGACATGGCATCGGC
1 CGATAGATGAAAGCCAGTGTAAGACCATGTCTAGGACACGGCATCGGC
41379072 ATTTTATCCC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
49 22 0.54
50 19 0.46
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
CGATAGATGAAAGCCAGTGTAAGACCATGTCTAGGACACGGCATCGGCCT
Found at i:41384863 original size:19 final size:19
Alignment explanation
Indices: 41384839--41384875 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
41384829 TTTCCATCAT
41384839 TTCTACTAAACACACCAAG
1 TTCTACTAAACACACCAAG
41384858 TTCTACTAAACACACCAA
1 TTCTACTAAACACACCAA
41384876 TGAAAAGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.32, G:0.03, T:0.22
Consensus pattern (19 bp):
TTCTACTAAACACACCAAG
Found at i:41391130 original size:27 final size:27
Alignment explanation
Indices: 41391100--41391153 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
41391090 TGTCATGTGA
* *
41391100 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
41391127 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
41391154 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:41398783 original size:180 final size:180
Alignment explanation
Indices: 41398472--41398809 Score: 482
Period size: 180 Copynumber: 1.9 Consensus size: 180
41398462 TAAGATCTGT
* * ** * *
41398472 TAATTTTCTCTGAAACTAAACTCGTATATATTCTTACCATAAAATTTTCAGAATTTTTTGTCTAG
1 TAATTTTCCCAGAAACTAAACTCACATATATTATTACCATAAAATTTTCAGAATTTTTGGTCTAG
* * * * * * *
41398537 CCAATAAGTACAGTTTATTCATTAAAGATACCCCTGTTTCATTATCTGACAGTTCTGACGTCTCT
66 CCAATAAGTACAGTGTATTCAATAAAGAGACCCCCGTTTCATTATCTGACAATTCCGACCTCTCT
41398602 TCACTAAAAATTATTTATCTCATGGTACGGGACTCTAAATTGAGAACCGC
131 TCACTAAAAATTATTTATCTCATGGTACGGGACTCTAAATTGAGAACCGC
* * *
41398652 TAATTTTCCCAGAAACTAGACTCACATATATTATTACCATAAAATTTTTAGAATTTTTGGTTTAG
1 TAATTTTCCCAGAAACTAAACTCACATATATTATTACCATAAAATTTTCAGAATTTTTGGTCTAG
* *
41398717 CCAATTAGTACAGTGTATTCAATAAATAGACCCCCGTTTCACTGT-TC-GACAATTCCGACCTCT
66 CCAATAAGTACAGTGTATTCAATAAAGAGACCCCCGTTTCA-T-TATCTGACAATTCCGACCTCT
41398780 CTTCACTAAAAATTATTTATCTCATGGTAC
129 CTTCACTAAAAATTATTTATCTCATGGTAC
41398810 AGCTATCGAA
Statistics
Matches: 138, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
180 134 0.97
181 3 0.02
182 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (180 bp):
TAATTTTCCCAGAAACTAAACTCACATATATTATTACCATAAAATTTTCAGAATTTTTGGTCTAG
CCAATAAGTACAGTGTATTCAATAAAGAGACCCCCGTTTCATTATCTGACAATTCCGACCTCTCT
TCACTAAAAATTATTTATCTCATGGTACGGGACTCTAAATTGAGAACCGC
Found at i:41399445 original size:50 final size:50
Alignment explanation
Indices: 41399365--41399558 Score: 219
Period size: 50 Copynumber: 3.9 Consensus size: 50
41399355 ACTGAAGCTC
* *
41399365 TCTGGTACGCATAGTAGCCTACACTCAGTACTACACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAA
* * * * ** *
41399415 TCTGGTACACGTAGTAGACTGCACTTAGTACTTCACATGTGATCAAAGTTAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGA-CCTA-TCAA
* ** *
41399467 -CGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAA
* * *
41399516 TCTGGTACACGTATTAGCCTACACTTAGTACTACACACGTGAC
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGAC
41399559 TCACAAAGGA
Statistics
Matches: 116, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
49 3 0.03
50 73 0.63
51 37 0.32
52 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTATCAA
Found at i:41410072 original size:29 final size:28
Alignment explanation
Indices: 41410040--41410142 Score: 100
Period size: 29 Copynumber: 3.5 Consensus size: 28
41410030 GTGACGAGAT
*
41410040 TGGCACTGAGTGTGCGAGATTGAAATGTA
1 TGGCACT-AGTGTGCGAGATTGAAATATA
* *
41410069 TGGCACTCAGTGTGCGAGTTTGAACTATA
1 TGGCACT-AGTGTGCGAGATTGAAATATA
* * *
41410098 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTA-GTGTGCGAGATTGAAAT-ATA
41410127 TGGCACTAAGTGTGCG
1 TGGCACT-AGTGTGCG
41410143 TGATCGAGTA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.06
29 58 0.92
30 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGATTGAAATATA
Found at i:41418217 original size:29 final size:28
Alignment explanation
Indices: 41418158--41418260 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 28
41418148 GTGACGAGAT
* *
41418158 TGGCACTGAGTGTGTGAGCTTGAAATGTA
1 TGGCACT-AGTGTGCGAGCTTGAAATATA
* * *
41418187 TGGCACTCAGTGTGCGAGTTTGGACTATA
1 TGGCACT-AGTGTGCGAGCTTGAAATATA
* *
41418216 TGGCACTATGTGTGCGGGCTT-AAATCACA
1 TGGCACTA-GTGTGCGAGCTTGAAAT-ATA
41418245 TGGCACTAAGTGTGCG
1 TGGCACT-AGTGTGCG
41418261 TGATCGAGTA
Statistics
Matches: 60, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 3 0.05
29 56 0.93
30 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (28 bp):
TGGCACTAGTGTGCGAGCTTGAAATATA
Found at i:41424746 original size:40 final size:39
Alignment explanation
Indices: 41424689--41424881 Score: 226
Period size: 40 Copynumber: 4.9 Consensus size: 39
41424679 GGATATAGCT
* * *
41424689 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* *
41424729 ACTTGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
*
41424769 ACTCGCACAAATGCCTTTGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
*** *
41424809 ACTCGCACAAATGCCTTCGGGACTT-GCCCAGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
* * *
41424848 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGGTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
41424882 ATCATCCAAA
Statistics
Matches: 130, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 32 0.25
40 94 0.72
41 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:41428038 original size:40 final size:40
Alignment explanation
Indices: 41427878--41428070 Score: 257
Period size: 39 Copynumber: 4.9 Consensus size: 40
41427868 TGTGTATGAA
*
41427878 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
41427917 TGTGCGAGTTGTGATATCCGGGCTAA-TCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
* * * *
41427956 TGTGCGAGCTATGATATCCGGGATAA-ACCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
* *
41427995 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
* * * * *
41428035 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGG
41428071 TGTTTGAACA
Statistics
Matches: 136, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 95 0.70
40 41 0.30
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (40 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:41435721 original size:39 final size:39
Alignment explanation
Indices: 41435667--41435860 Score: 235
Period size: 40 Copynumber: 4.9 Consensus size: 39
41435657 TGTGTATGAA
* *
41435667 TGTGCGAATTGTGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
41435706 TGTGCGAGTTGTGATATCCGGGCTAATCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
41435745 TGTGCGAGCTATGATATCCGGGATAAACTCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGC-CCGAAGGCAAT
* *
41435785 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * * *
41435825 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGG
41435861 TGTTTGAACA
Statistics
Matches: 135, Mismatches: 18, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
39 60 0.44
40 74 0.55
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.26
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:41435797 original size:79 final size:79
Alignment explanation
Indices: 41435678--41435830 Score: 245
Period size: 79 Copynumber: 1.9 Consensus size: 79
41435668 GTGCGAATTG
* * *
41435678 TGATATCTGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAA-TCCCGAAGGC
1 TGATATCCGGGATAAACCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
41435742 AATTGTGCGAGCTA
66 AATTGTGCGAGCTA
*
41435756 TGATATCCGGGATAAACTCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGG
1 TGATATCCGGGATAAAC-CCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGG
*
41435821 CATTTGTGCG
65 CAATTGTGCG
41435831 GGTTATCATA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
78 14 0.21
79 36 0.53
80 18 0.26
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (79 bp):
TGATATCCGGGATAAACCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGCTA
Found at i:41443721 original size:40 final size:40
Alignment explanation
Indices: 41443660--41443807 Score: 176
Period size: 40 Copynumber: 3.7 Consensus size: 40
41443650 GCTACTCGCT
* * * *
41443660 CAAATGCCTTTGGGACATAGCCCGGTTAGAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
* *
41443700 CAATTGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTAGCA
* * *
41443740 CAAATGCCTTCGGGACTT-GCCCGG-AACTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTAGCA
41443779 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
41443808 CATCCAAATA
Statistics
Matches: 92, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.36
40 56 0.61
41 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
Found at i:41459961 original size:39 final size:39
Alignment explanation
Indices: 41459931--41460089 Score: 192
Period size: 39 Copynumber: 4.1 Consensus size: 39
41459921 TATATGTCCA
* *
41459931 GCACATAGCCTGCGGACCTAAAGTCTAGATATAATTCTC
1 GCACATAGCCTGCGGACATAAAGTCCAGATATAATTCTC
*
41459970 GCTCATAGCCTGCGGACATAAAGTCCAGATATAATTCTC
1 GCACATAGCCTGCGGACATAAAGTCCAGATATAATTCTC
* * * *
41460009 GCATATAGCCTGCGGACTTGAAGTCCGGATATAATTCTC
1 GCACATAGCCTGCGGACATAAAGTCCAGATATAATTCTC
** ** * * *
41460048 GCTTATAGCCTATGGACTTGAAGTCCGGATATAATTCTC
1 GCACATAGCCTGCGGACATAAAGTCCAGATATAATTCTC
41460087 GCA
1 GCA
41460090 TATATATATT
Statistics
Matches: 108, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 108 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (39 bp):
GCACATAGCCTGCGGACATAAAGTCCAGATATAATTCTC
Found at i:41460020 original size:78 final size:78
Alignment explanation
Indices: 41459935--41460093 Score: 228
Period size: 78 Copynumber: 2.0 Consensus size: 78
41459925 TGTCCAGCAC
* *
41459935 ATAGCCTGCGGACCTAAAGTCTAGATATAATTCTCGCTCATAGCCTGCGGACATAAAGTCCAGAT
1 ATAGCCTGCGGACCTAAAGTCCAGATATAATTCTCGCTCATAGCCTACGGACATAAAGTCCAGAT
41460000 ATAATTCTCGCAT
66 ATAATTCTCGCAT
* * * * * * * *
41460013 ATAGCCTGCGGACTTGAAGTCCGGATATAATTCTCGCTTATAGCCTATGGACTTGAAGTCCGGAT
1 ATAGCCTGCGGACCTAAAGTCCAGATATAATTCTCGCTCATAGCCTACGGACATAAAGTCCAGAT
41460078 ATAATTCTCGCAT
66 ATAATTCTCGCAT
41460091 ATA
1 ATA
41460094 TATATTCACA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 71 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (78 bp):
ATAGCCTGCGGACCTAAAGTCCAGATATAATTCTCGCTCATAGCCTACGGACATAAAGTCCAGAT
ATAATTCTCGCAT
Found at i:41468044 original size:39 final size:39
Alignment explanation
Indices: 41468017--41468175 Score: 255
Period size: 39 Copynumber: 4.1 Consensus size: 39
41468007 TGTCCAGCAC
41468017 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
*
41468056 ATAGCCTGCGGACATAAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
* * *
41468095 ATAGCCTGCGGACTTGAAGTCCGGATATAATTCTCGCTT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
** *
41468134 ATAGCCTATGGACCTGAAGTCCGGATATAATTCTCGCAT
1 ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
41468173 ATA
1 ATA
41468176 TATATTCACA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (39 bp):
ATAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCAT
Found at i:41471852 original size:26 final size:26
Alignment explanation
Indices: 41471816--41471926 Score: 114
Period size: 27 Copynumber: 4.2 Consensus size: 26
41471806 AGCATGGCTT
* *
41471816 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAATAGATAATGTGGCAGAGTCA
*
41471842 CCAGAATAGATAATTGTGGCAGAGCCA
1 CCAGAATAGATAA-TGTGGCAGAGTCA
* * *
41471869 CCAGAATAGGTATATCTGGTAGAGTCA
1 CCAGAATAGATA-ATGTGGCAGAGTCA
* * *
41471896 CCAGATTAGATAAATGTGGCATAGCCA
1 CCAGAATAGAT-AATGTGGCAGAGTCA
41471923 CCAG
1 CCAG
41471927 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 12 0.17
27 55 0.80
28 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (26 bp):
CCAGAATAGATAATGTGGCAGAGTCA
Found at i:41473136 original size:16 final size:16
Alignment explanation
Indices: 41473111--41473144 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
41473101 CTAAAAGAAA
41473111 AAGAAAAGATGAGCAG
1 AAGAAAAGATGAGCAG
*
41473127 AAGAAGAGATGAGCAG
1 AAGAAAAGATGAGCAG
41473143 AA
1 AA
41473145 AATTTAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.56, C:0.06, G:0.32, T:0.06
Consensus pattern (16 bp):
AAGAAAAGATGAGCAG
Found at i:41473390 original size:24 final size:24
Alignment explanation
Indices: 41473353--41473431 Score: 115
Period size: 24 Copynumber: 3.3 Consensus size: 24
41473343 TTCCTTGATT
41473353 TCCTC-CCCTTATCAGCTCCTAAA
1 TCCTCTCCCTTATCAGCTCCTAAA
41473376 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCCTTATCAGCTCCTAAA
* * *
41473400 TCCTATCCCTTAGCAACTCCTAAA
1 TCCTCTCCCTTATCAGCTCCTAAA
*
41473424 TCCCCTCC
1 TCCTCTCC
41473432 TGGCAGACTT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 5 0.10
24 45 0.90
ACGTcount: A:0.22, C:0.44, G:0.04, T:0.30
Consensus pattern (24 bp):
TCCTCTCCCTTATCAGCTCCTAAA
Found at i:41479697 original size:26 final size:26
Alignment explanation
Indices: 41479667--41479778 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
41479657 CAGCATGGCT
* *
41479667 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
*
41479693 ACCAGAACAGATAATTGTGGCTGAGCC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
*
41479720 ACCAGAACAGGTATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* * *
41479747 ACTAGATCAGATAAATGTGGCATAGCC
1 ACCAGAACAGAT-AATGTGGCAGAGCC
41479774 ACCAG
1 ACCAG
41479779 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.19
27 57 0.78
28 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:41481247 original size:24 final size:24
Alignment explanation
Indices: 41481217--41481285 Score: 111
Period size: 24 Copynumber: 2.9 Consensus size: 24
41481207 TGATTTCCTC
*
41481217 CCCTTATCAGCTCCTAAATCCTCT
1 CCCTTATCAGCTCCTAAATCCTAT
*
41481241 CTCTTATCAGCTCCTAAATCCTAT
1 CCCTTATCAGCTCCTAAATCCTAT
*
41481265 CCCTTATCAACTCCTAAATCC
1 CCCTTATCAGCTCCTAAATCC
41481286 CCTCCTGGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.25, C:0.39, G:0.03, T:0.33
Consensus pattern (24 bp):
CCCTTATCAGCTCCTAAATCCTAT
Found at i:41486083 original size:40 final size:39
Alignment explanation
Indices: 41485918--41486101 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
41485908 AAATTGAATG
* * *
41485918 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
41485958 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
41485998 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
41486038 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
41486077 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
41486102 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:41486126 original size:80 final size:81
Alignment explanation
Indices: 41485958--41486146 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
41485948 GCTGGAAATT
* * * *
41485958 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
41486023 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
41486039 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
41486102 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
41486118 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
41486147 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:41494201 original size:40 final size:39
Alignment explanation
Indices: 41494036--41494219 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
41494026 AAATTGAATG
* * *
41494036 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
41494076 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
41494116 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
41494156 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
41494195 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
41494220 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:41494244 original size:80 final size:81
Alignment explanation
Indices: 41494076--41494264 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
41494066 GCTGGAAATT
* * * *
41494076 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
41494141 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
41494157 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
41494220 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
41494236 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
41494265 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:41495692 original size:14 final size:14
Alignment explanation
Indices: 41495673--41495700 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
41495663 ACATGCAGAG
41495673 TACCTACAGATGAT
1 TACCTACAGATGAT
41495687 TACCTACAGATGAT
1 TACCTACAGATGAT
41495701 AACATTGCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (14 bp):
TACCTACAGATGAT
Found at i:41497085 original size:2 final size:2
Alignment explanation
Indices: 41497080--41497104 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
41497070 TAAAAAGTGA
41497080 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
41497105 AAAACCTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:41499245 original size:43 final size:43
Alignment explanation
Indices: 41499184--41499267 Score: 159
Period size: 43 Copynumber: 2.0 Consensus size: 43
41499174 TATGTCTATG
41499184 ATTGTTTGAATTTGTGTCATGACTGGTAATACCTCATAACCTC
1 ATTGTTTGAATTTGTGTCATGACTGGTAATACCTCATAACCTC
*
41499227 ATTGTTTGAATTTGTGTCATGACTGGTAATACCTCGTAACC
1 ATTGTTTGAATTTGTGTCATGACTGGTAATACCTCATAACC
41499268 CCAATTAGGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (43 bp):
ATTGTTTGAATTTGTGTCATGACTGGTAATACCTCATAACCTC
Found at i:41501951 original size:29 final size:28
Alignment explanation
Indices: 41501860--41501974 Score: 104
Period size: 29 Copynumber: 4.0 Consensus size: 28
41501850 TAACTGTATC
* * *
41501860 TAGCCCATTAAGCTCAATCACATTCATA
1 TAGCCCATTAGGCCCAATCACATTTATA
* * * *
41501888 TGGCCCATTAGGCCCAAATTACCTGTATA
1 TAGCCCATTAGGCCC-AATCACATTTATA
* *
41501917 TGGCCCATTAGGCCCAAATCACATTTACA
1 TAGCCCATTAGGCCC-AATCACATTTATA
* * *
41501946 TAGCCCGTTAGGCCCAGTCACATTCATA
1 TAGCCCATTAGGCCCAATCACATTTATA
41501974 T
1 T
41501975 TCATGCTCAC
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
28 23 0.33
29 47 0.67
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (28 bp):
TAGCCCATTAGGCCCAATCACATTTATA
Found at i:41501957 original size:58 final size:57
Alignment explanation
Indices: 41501853--41501961 Score: 137
Period size: 58 Copynumber: 1.9 Consensus size: 57
41501843 ATTCACATAA
* * * *
41501853 CTGTATCTAGCCCATTAAGCTCAATCACATTCATATGGCCCATTAGGCCCAAATTAC
1 CTGTATATAGCCCATTAAGCCCAATCACATTCACATAGCCCATTAGGCCCAAATTAC
* * * *
41501910 CTGTATATGGCCCATTAGGCCCAAATCACATTTACATAGCCCGTTAGGCCCA
1 CTGTATATAGCCCATTAAGCCC-AATCACATTCACATAGCCCATTAGGCCCA
41501962 GTCACATTCA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 18 0.42
58 25 0.58
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (57 bp):
CTGTATATAGCCCATTAAGCCCAATCACATTCACATAGCCCATTAGGCCCAAATTAC
Found at i:41508100 original size:40 final size:40
Alignment explanation
Indices: 41508044--41508211 Score: 170
Period size: 40 Copynumber: 4.2 Consensus size: 40
41508034 CAATTGAATG
*
41508044 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGACTT
41508085 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG--TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AG-TGACTT
* * * *
41508124 AAATCCGGGCTAATACCCGAAGGCATTTGTGCA-AGACGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGAC-TT
*
41508164 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTG-GTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCA-GTGACTT
41508204 ATATCCGG
1 ATATCCGG
41508212 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
37 1 0.01
39 8 0.08
40 92 0.87
41 4 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGACTT
Found at i:41508179 original size:80 final size:80
Alignment explanation
Indices: 41508046--41508211 Score: 237
Period size: 80 Copynumber: 2.1 Consensus size: 80
41508036 ATTGAATGAT
* *
41508046 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
*
41508111 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGTTAA
* *
41508126 ATCCGGGCTAATACCCGAAGGCATTTGTGC-A-AGACGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGAC-TT-TATCCGGGCTAAGACCCGAAGGCA
* *
41508189 TTCGTGCATGTGGTTAT
64 TTCGTGCAAGTGGTTAA
41508206 ATCCGG
1 ATCCGG
41508212 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
78 3 0.04
79 3 0.04
80 71 0.92
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:41516114 original size:40 final size:40
Alignment explanation
Indices: 41516058--41516225 Score: 170
Period size: 40 Copynumber: 4.2 Consensus size: 40
41516048 CAATTGAATG
*
41516058 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AGTGACTT
41516099 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG--TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGC-AG-TGACTT
* * * *
41516138 AAATCCGGGCTAATACCCGAAGGCATTTGTGCA-AGACGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGAC-TT
*
41516178 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTG-GTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCA-GTGACTT
41516218 ATATCCGG
1 ATATCCGG
41516226 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
37 1 0.01
39 8 0.08
40 92 0.87
41 4 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAGTGACTT
Found at i:41516193 original size:80 final size:80
Alignment explanation
Indices: 41516060--41516225 Score: 237
Period size: 80 Copynumber: 2.1 Consensus size: 80
41516050 ATTGAATGAT
* *
41516060 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
*
41516125 CGTGCAAGTTGTTAA
66 CGTGCAAGTGGTTAA
* *
41516140 ATCCGGGCTAATACCCGAAGGCATTTGTGC-A-AGACGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGAC-TT-TATCCGGGCTAAGACCCGAAGGCA
* *
41516203 TTCGTGCATGTGGTTAT
64 TTCGTGCAAGTGGTTAA
41516220 ATCCGG
1 ATCCGG
41516226 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
78 3 0.04
79 3 0.04
80 71 0.92
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAGACTTTATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:41525871 original size:46 final size:46
Alignment explanation
Indices: 41525818--41526130 Score: 430
Period size: 46 Copynumber: 6.8 Consensus size: 46
41525808 TGATGTCATA
* * * *
41525818 GTATCTTTCAACTATGGTCTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTC-ATTTCATATCACGTTGCCATG
* *** *
41525864 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGTTGCCATG
* *
41525911 GTATCTTTCAACCATGGTTTTACTCATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
* *
41525957 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTACCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
*
41526003 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
* * *
41526049 GTATCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCAATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
* *
41526095 GTATCTTTCAACCATGGTCTTACACATTCCATATCA
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCA
41526131 GAGAGCACAC
Statistics
Matches: 245, Mismatches: 20, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
46 207 0.84
47 38 0.16
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATG
Found at i:41531447 original size:28 final size:29
Alignment explanation
Indices: 41531380--41531451 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 29
41531370 ATATTGAGTC
* ** *
41531380 CGCACACTTAGTGCTATATATATTTAGCT
1 CGCACACTTAGTGCTATATAGATCAAACT
41531409 CGCACACTTAGTGCTATAT-GATCAAACT
1 CGCACACTTAGTGCTATATAGATCAAACT
41531437 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
41531452 GTACAAATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 20 0.51
29 19 0.49
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAGATCAAACT
Found at i:41540296 original size:31 final size:31
Alignment explanation
Indices: 41540260--41540321 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
41540250 ATGCAAAAGC
41540260 ATATATTGAG-TCCGCACACTTAGTGCTATAT
1 ATATATTGAGCT-CGCACACTTAGTGCTATAT
*
41540291 ATATATTTAGCTCGCACACTTAGTGCTATAT
1 ATATATTGAGCTCGCACACTTAGTGCTATAT
41540322 GATCAAACTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 28 0.97
32 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (31 bp):
ATATATTGAGCTCGCACACTTAGTGCTATAT
Found at i:41545642 original size:54 final size:54
Alignment explanation
Indices: 41545470--41545646 Score: 200
Period size: 55 Copynumber: 3.3 Consensus size: 54
41545460 ATGTCTTGAT
* * * *
41545470 ATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGC
1 ATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGC
* * * *
41545523 ATGGTCTTACATGGGACATT--TT-CCTTATAGTAACTCATCAATTCCATGTCTTGAC
1 ATGGTCTTACAT--GA-TTTCCTTGCCTTATAG-AACTCATCAATGCCATGCCTTGGC
* *
41545578 ATGGTGTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGC
1 ATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGC
41545632 ATGGTCTTACATGAT
1 ATGGTCTTACATGAT
41545647 ATCTTTATCT
Statistics
Matches: 101, Mismatches: 15, Indels: 15
0.77 0.11 0.11
Matches are distributed among these distances:
52 2 0.02
53 19 0.19
54 39 0.39
55 40 0.40
56 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (54 bp):
ATGGTCTTACATGATTTCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGGC
Found at i:41545686 original size:47 final size:47
Alignment explanation
Indices: 41545631--41545752 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
41545621 CATGCCTTGG
* *
41545631 CATGGTCTTACATGATATCTTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
41545678 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTGCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
41545725 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
41545753 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:41563083 original size:41 final size:40
Alignment explanation
Indices: 41563038--41563145 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
41563028 ACTAAAATCG
41563038 GGTTAAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAACCA
1 GGTTAAGTCCCGAAGGCA-TTTGTGCGAGTTACCAAAACCA
* * * * *
41563079 GGTTAAGCCCCGAAGGCATTCGTGCGAGTTACTAAATCCG
1 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCA
* * *
41563119 GGTAAATTCCCGAAGGCAATTGTGCGA
1 GGTTAAGTCCCGAAGGCATTTGTGCGA
41563146 ATCACTATAA
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 40 0.70
41 17 0.30
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAACCA
Found at i:41563160 original size:40 final size:40
Alignment explanation
Indices: 41563036--41563213 Score: 112
Period size: 40 Copynumber: 4.5 Consensus size: 40
41563026 TGACTAAAAT
* * * * * *
41563036 CGGGTTAAGTCCCGAAGGCATTTTGTGCGAGTTACCAAAAC
1 CGGGTAAATTCCCGAAGGCA-ATTGTGCGAGTCACTATAAC
* * ** *
41563077 CAGGTTAAGCCCCGAAGGC-ATTCGTGCGAGTTACTA-AATC
1 CGGGTAAATTCCCGAAGGCAATT-GTGCGAGTCACTATAA-C
*
41563117 CGGGTAAATTCCCGAAGGCAATTGTGCGAATCACTATAAC
1 CGGGTAAATTCCCGAAGGCAATTGTGCGAGTCACTATAAC
* * * * * * *
41563157 CGGG-CAATGTCCCGAAGACAATCGAGCTAGTCGCTATATC
1 CGGGTAAAT-TCCCGAAGGCAATTGTGCGAGTCACTATAAC
*
41563197 CGGTTAAATT-CCGAAGG
1 CGGGTAAATTCCCGAAGG
41563214 TACGTGATTC
Statistics
Matches: 110, Mismatches: 21, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
39 13 0.12
40 72 0.65
41 25 0.23
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (40 bp):
CGGGTAAATTCCCGAAGGCAATTGTGCGAGTCACTATAAC
Found at i:41568352 original size:40 final size:40
Alignment explanation
Indices: 41568257--41568459 Score: 225
Period size: 40 Copynumber: 5.1 Consensus size: 40
41568247 CGGAATACAA
* *
41568257 CCGGATATAACCAC-ACGCACGAATGCCTTCGGGTCTTAG-
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGC
* * *
41568296 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* *
41568336 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
41568376 CCGGATGTAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
41568416 CCGGATATAA-ATACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACA-ACTAGCACAAATGCCTTCGGGTCTTAGC
41568456 CCGG
1 CCGG
41568460 GTATCATTCA
Statistics
Matches: 139, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.24
40 104 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:41574528 original size:41 final size:40
Alignment explanation
Indices: 41574469--41574610 Score: 167
Period size: 41 Copynumber: 3.5 Consensus size: 40
41574459 CGAATGGTAT
* * * *
41574469 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAATGACTAAAA
1 CCGGGTTAAGTCCCGAAGGCTTTTGTGC-AAGTTACTAAAA
*
41574510 CCGGGTTAAGTCCCGAAGGCATTTTGTGCAAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGC-TTTTGTGCAAGTTACTAAAA
* * * *
41574551 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCTTTTGTGCAAGTTACTAAAA
* *
41574591 CCGGGTAAATTCCCGAAGGC
1 CCGGGTTAAGTCCCGAAGGC
41574611 AATTGTGCGA
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
40 33 0.38
41 47 0.53
42 8 0.09
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCTTTTGTGCAAGTTACTAAAA
Found at i:41574595 original size:40 final size:40
Alignment explanation
Indices: 41574469--41574635 Score: 174
Period size: 40 Copynumber: 4.1 Consensus size: 40
41574459 CGAATGGTAT
* * * * *
41574469 CCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAATGACTAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAAA
*
41574510 CCGGGTTAAGTCCCGAAGGCATTTTGTGCAAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCA-TTTGTGCAAGTTACTAAAA
* * *
41574551 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAAA
* * * * *
41574591 CCGGGTAAATTCCCGAAGGCAATTGTGCGAA-TCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAAA
41574631 CCGGG
1 CCGGG
41574636 CAATGTCCTG
Statistics
Matches: 106, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 50 0.47
41 49 0.46
42 7 0.07
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAAA
Found at i:41582876 original size:49 final size:49
Alignment explanation
Indices: 41582820--41582986 Score: 280
Period size: 49 Copynumber: 3.4 Consensus size: 49
41582810 CACATATATG
41582820 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
* * * * *
41582869 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
41582918 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
*
41582967 TGTGATAAGGCCTAATGGCC
1 TGTGATAAGGCCGAATGGCC
41582987 GATGAGGCCT
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 107 1.00
ACGTcount: A:0.31, C:0.11, G:0.32, T:0.26
Consensus pattern (49 bp):
TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
Found at i:41582996 original size:17 final size:17
Alignment explanation
Indices: 41582974--41583007 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
41582964 ATATGTGATA
41582974 AGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATG
41582991 AGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATG
41583008 TGATGAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.35, T:0.18
Consensus pattern (17 bp):
AGGCCTAATGGCCGATG
Found at i:41583002 original size:66 final size:66
Alignment explanation
Indices: 41582925--41583056 Score: 228
Period size: 66 Copynumber: 2.0 Consensus size: 66
41582915 ATATGTGATA
41582925 AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41582990 G
66 G
* * * *
41582991 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41583056 G
66 G
41583057 TGGTGAATGT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (66 bp):
AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
G
Found at i:41583002 original size:115 final size:115
Alignment explanation
Indices: 41582876--41583220 Score: 391
Period size: 115 Copynumber: 3.0 Consensus size: 115
41582866 ATATGTGATA
* *
41582876 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCGAATGGCCAAT
41582941 GCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATG
66 GCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATG
* * *
41582991 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCGAATGGCCAAT
* * *
41583056 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
66 GCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATG
* * * ** * * *
41583106 TGG--TGAATGTG--AAAGTGTATGTATATGTGATAA--GG-CCTA-ATGGCCGATGAGGCCTAA
1 AGGCCT-AATG-GCCGATGTG-ATG-A-ATGTGA-AAGTGGATGTATAT-G-TGATAAGGCCGAA
* * *
41583163 TGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATG
58 TGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATG
41583221 TGGTGAATGT
Statistics
Matches: 205, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
113 7 0.03
114 10 0.05
115 180 0.88
116 6 0.03
117 2 0.01
ACGTcount: A:0.28, C:0.11, G:0.34, T:0.27
Consensus pattern (115 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCGAATGGCCAAT
GCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATG
Found at i:41583041 original size:49 final size:49
Alignment explanation
Indices: 41582991--41583362 Score: 340
Period size: 49 Copynumber: 7.2 Consensus size: 49
41582981 ATGGCCGATG
* * *
41582991 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATG
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
41583040 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
41583089 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
* * * *
41583138 AGGCCTAATGGCCGATGAGGCCT-AATG-GCCGATGTGATGAATGTGAAAGTGGATGTATA
1 AGGCCTAATGGCCGATGTGG--TGAATGTG--AAAGTG-T--ATGT-ATA-T-G-TG-ATA
* * * * ** * * * * * *
41583197 TGTG-ATGA-GGCCTAATG-GCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AG-GCCTAATGGCC-GATGTGGTGA-AT-GTGAAAGTGTATGTATATGT-GA-----TA
41583253 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
41583302 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
41583351 AGGCCTAATGGC
1 AGGCCTAATGGC
41583363 TAATGTAAAA
Statistics
Matches: 264, Mismatches: 32, Indels: 54
0.75 0.09 0.15
Matches are distributed among these distances:
49 178 0.67
50 4 0.02
51 7 0.03
52 2 0.01
53 1 0.00
54 6 0.02
55 22 0.08
56 10 0.04
57 9 0.03
58 13 0.05
59 10 0.04
60 2 0.01
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
Found at i:41583090 original size:164 final size:164
Alignment explanation
Indices: 41582827--41583318 Score: 903
Period size: 164 Copynumber: 3.0 Consensus size: 164
41582817 ATGTGTGATA
* * * *
41582827 AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
* * * *
41582892 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAG
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
*
41582957 TGGATGTATATGTGATAAGGCCTAATGGCCGATG
131 TGTATGTATATGTGATAAGGCCTAATGGCCGATG
41582991 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
41583056 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
41583121 TGTATGTATATGTGATAAGGCCTAATGGCCGATG
131 TGTATGTATATGTGATAAGGCCTAATGGCCGATG
41583155 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
41583220 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
41583285 TGTATGTATATGTGATAAGGCCTAATGGCCGATG
131 TGTATGTATATGTGATAAGGCCTAATGGCCGATG
41583319 TGGTGAATGT
Statistics
Matches: 319, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
164 319 1.00
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.28
Consensus pattern (164 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
TGTATGTATATGTGATAAGGCCTAATGGCCGATG
Found at i:41583104 original size:98 final size:98
Alignment explanation
Indices: 41582991--41583362 Score: 378
Period size: 98 Copynumber: 3.6 Consensus size: 98
41582981 ATGGCCGATG
* *
41582991 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
41583056 GTGGTGAATGTGAAAGTGTATGTATATGTGATA
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATA
*
41583089 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
* * * *
41583154 GAGGCCT-AATG-GCCGATGTGATGAATGTGAAAGTGGATGTATA
66 GTGG--TGAATGTG--AAAGTG-T--ATGT-ATA-T-G-TG-ATA
* * * * *
41583197 TGTG-ATGA-GGCCTAATGGCCGATG--TGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
1 AG-GCCTAATGGCC-GAT-G-TGATGAAT-GTG------AAAGTGTATGTATATGTGATAAGGCC
41583258 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
55 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
*
41583302 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
41583363 TAATGTAAAA
Statistics
Matches: 222, Mismatches: 23, Indels: 58
0.73 0.08 0.19
Matches are distributed among these distances:
98 99 0.45
99 4 0.02
100 5 0.02
101 1 0.00
103 7 0.03
104 7 0.03
105 10 0.05
106 7 0.03
107 7 0.03
108 10 0.05
109 7 0.03
110 7 0.03
112 1 0.00
113 5 0.02
114 4 0.02
115 41 0.18
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (98 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
GTGGTGAATGTGAAAGTGTATGTATATGTGATA
Found at i:41583160 original size:17 final size:17
Alignment explanation
Indices: 41583138--41583171 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
41583128 ATATGTGATA
41583138 AGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATG
41583155 AGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATG
41583172 TGATGAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.35, T:0.18
Consensus pattern (17 bp):
AGGCCTAATGGCCGATG
Found at i:41583165 original size:66 final size:66
Alignment explanation
Indices: 41583089--41583220 Score: 237
Period size: 66 Copynumber: 2.0 Consensus size: 66
41583079 ATATGTGATA
* *
41583089 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41583154 G
66 G
*
41583155 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41583220 G
66 G
41583221 TGGTGAATGT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.27, C:0.12, G:0.34, T:0.27
Consensus pattern (66 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
G
Found at i:41583206 original size:213 final size:213
Alignment explanation
Indices: 41582820--41583367 Score: 806
Period size: 213 Copynumber: 2.6 Consensus size: 213
41582810 CACATATATG
* * * * *
41582820 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
41582885 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGCGATGAAT
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATGCGATGAAT
41582950 GTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATGAGGCCTAATGGCCGATGTGATGAA
131 GTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATGAGGCCTAATGGCCGATGTGATGAA
41583015 TGTGAAAGTGGATGTATA
196 TGTGAAAGTGGATGTATA
*
41583033 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
* * *
41583098 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGAGGCCT-A
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATG-CG-ATGA
** ** *
41583162 ATG-G-CCGATGTGATG-A-ATGTGA-AAGTGGATGTATAT-G-TGATGAGGCCTAATGGCCGAT
129 ATGTGAAAG-TG-GATGTATATGTGATAA--GG-CCTA-ATGGCCGATGAGGCCTAATGGCCGAT
* *
41583220 GTGGTGAATGTGAAAGTGTATGTATA
188 GTGATGAATGTGAAAGTGGATGTATA
41583246 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
41583311 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCTAATG
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATG
41583368 TAAAATATAT
Statistics
Matches: 307, Mismatches: 20, Indels: 16
0.90 0.06 0.05
Matches are distributed among these distances:
211 2 0.01
212 7 0.02
213 283 0.92
214 12 0.04
215 3 0.01
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.28
Consensus pattern (213 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATGCGATGAAT
GTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATGAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGGATGTATA
Found at i:41583238 original size:115 final size:115
Alignment explanation
Indices: 41582925--41583269 Score: 454
Period size: 115 Copynumber: 3.0 Consensus size: 115
41582915 ATATGTGATA
* * *
41582925 AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
* ** ** *
41582990 GAGGCCT-AATG-G-CCGATGTGATG-A-ATGTGA-AAGTGGATGTATAT-G-TGATG
66 GTGG--TGAATGTGAAAG-TGT-ATGTATATGTGATAA--GG-CCTA-ATGGCCGATG
* *
41583040 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41583105 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
*
41583155 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41583220 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
41583270 TGGTGAATGT
Statistics
Matches: 208, Mismatches: 14, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
113 3 0.01
114 10 0.05
115 186 0.89
116 7 0.03
117 2 0.01
ACGTcount: A:0.28, C:0.11, G:0.34, T:0.27
Consensus pattern (115 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
Found at i:41583514 original size:37 final size:37
Alignment explanation
Indices: 41583464--41583548 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
41583454 GGAATATGTT
*
41583464 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
41583501 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
41583538 CCGGGTAAGAC
1 CCGGGTAAGAC
41583549 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:41588218 original size:49 final size:49
Alignment explanation
Indices: 41588162--41588328 Score: 280
Period size: 49 Copynumber: 3.4 Consensus size: 49
41588152 CACATATATG
41588162 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
* * * * *
41588211 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
41588260 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
*
41588309 TGTGATAAGGCCTAATGGCC
1 TGTGATAAGGCCGAATGGCC
41588329 GATGAGGCCT
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 107 1.00
ACGTcount: A:0.31, C:0.11, G:0.32, T:0.26
Consensus pattern (49 bp):
TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
Found at i:41588338 original size:17 final size:17
Alignment explanation
Indices: 41588316--41588349 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
41588306 ATATGTGATA
41588316 AGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATG
41588333 AGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATG
41588350 TGATGAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.35, T:0.18
Consensus pattern (17 bp):
AGGCCTAATGGCCGATG
Found at i:41588344 original size:66 final size:66
Alignment explanation
Indices: 41588267--41588398 Score: 228
Period size: 66 Copynumber: 2.0 Consensus size: 66
41588257 ATATGTGATA
41588267 AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41588332 G
66 G
* * * *
41588333 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41588398 G
66 G
41588399 TGGTGAATGT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (66 bp):
AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
G
Found at i:41588344 original size:115 final size:115
Alignment explanation
Indices: 41588218--41588562 Score: 391
Period size: 115 Copynumber: 3.0 Consensus size: 115
41588208 ATATGTGATA
* *
41588218 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCGAATGGCCAAT
41588283 GCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATG
66 GCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATG
* * *
41588333 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCGAATGGCCAAT
* * *
41588398 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
66 GCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATG
* * * ** * * *
41588448 TGG--TGAATGTG--AAAGTGTATGTATATGTGATAA--GG-CCTA-ATGGCCGATGAGGCCTAA
1 AGGCCT-AATG-GCCGATGTG-ATG-A-ATGTGA-AAGTGGATGTATAT-G-TGATAAGGCCGAA
* * *
41588505 TGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATG
58 TGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATG
41588563 TGGTGAATGT
Statistics
Matches: 205, Mismatches: 17, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
113 7 0.03
114 10 0.05
115 180 0.88
116 6 0.03
117 2 0.01
ACGTcount: A:0.28, C:0.11, G:0.34, T:0.27
Consensus pattern (115 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCGAATGGCCAAT
GCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATG
Found at i:41588383 original size:49 final size:49
Alignment explanation
Indices: 41588333--41588704 Score: 340
Period size: 49 Copynumber: 7.2 Consensus size: 49
41588323 ATGGCCGATG
* * *
41588333 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATG
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
41588382 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
41588431 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
* * * *
41588480 AGGCCTAATGGCCGATGAGGCCT-AATG-GCCGATGTGATGAATGTGAAAGTGGATGTATA
1 AGGCCTAATGGCCGATGTGG--TGAATGTG--AAAGTG-T--ATGT-ATA-T-G-TG-ATA
* * * * ** * * * * * *
41588539 TGTG-ATGA-GGCCTAATG-GCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AG-GCCTAATGGCC-GATGTGGTGA-AT-GTGAAAGTGTATGTATATGT-GA-----TA
41588595 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
41588644 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
41588693 AGGCCTAATGGC
1 AGGCCTAATGGC
41588705 TAATGTAAAA
Statistics
Matches: 264, Mismatches: 32, Indels: 54
0.75 0.09 0.15
Matches are distributed among these distances:
49 178 0.67
50 4 0.02
51 7 0.03
52 2 0.01
53 1 0.00
54 6 0.02
55 22 0.08
56 10 0.04
57 9 0.03
58 13 0.05
59 10 0.04
60 2 0.01
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
Found at i:41588432 original size:164 final size:164
Alignment explanation
Indices: 41588169--41588660 Score: 903
Period size: 164 Copynumber: 3.0 Consensus size: 164
41588159 ATGTGTGATA
* * * *
41588169 AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
* * * *
41588234 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAG
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
*
41588299 TGGATGTATATGTGATAAGGCCTAATGGCCGATG
131 TGTATGTATATGTGATAAGGCCTAATGGCCGATG
41588333 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
41588398 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
41588463 TGTATGTATATGTGATAAGGCCTAATGGCCGATG
131 TGTATGTATATGTGATAAGGCCTAATGGCCGATG
41588497 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
41588562 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
41588627 TGTATGTATATGTGATAAGGCCTAATGGCCGATG
131 TGTATGTATATGTGATAAGGCCTAATGGCCGATG
41588661 TGGTGAATGT
Statistics
Matches: 319, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
164 319 1.00
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.28
Consensus pattern (164 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAG
TGTATGTATATGTGATAAGGCCTAATGGCCGATG
Found at i:41588446 original size:98 final size:98
Alignment explanation
Indices: 41588333--41588704 Score: 378
Period size: 98 Copynumber: 3.6 Consensus size: 98
41588323 ATGGCCGATG
* *
41588333 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
41588398 GTGGTGAATGTGAAAGTGTATGTATATGTGATA
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATA
*
41588431 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
* * * *
41588496 GAGGCCT-AATG-GCCGATGTGATGAATGTGAAAGTGGATGTATA
66 GTGG--TGAATGTG--AAAGTG-T--ATGT-ATA-T-G-TG-ATA
* * * * *
41588539 TGTG-ATGA-GGCCTAATGGCCGATG--TGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
1 AG-GCCTAATGGCC-GAT-G-TGATGAAT-GTG------AAAGTGTATGTATATGTGATAAGGCC
41588600 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
55 TAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
*
41588644 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
41588705 TAATGTAAAA
Statistics
Matches: 222, Mismatches: 23, Indels: 58
0.73 0.08 0.19
Matches are distributed among these distances:
98 99 0.45
99 4 0.02
100 5 0.02
101 1 0.00
103 7 0.03
104 7 0.03
105 10 0.05
106 7 0.03
107 7 0.03
108 10 0.05
109 7 0.03
110 7 0.03
112 1 0.00
113 5 0.02
114 4 0.02
115 41 0.18
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (98 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
GTGGTGAATGTGAAAGTGTATGTATATGTGATA
Found at i:41588502 original size:17 final size:17
Alignment explanation
Indices: 41588480--41588513 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
41588470 ATATGTGATA
41588480 AGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATG
41588497 AGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATG
41588514 TGATGAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.35, T:0.18
Consensus pattern (17 bp):
AGGCCTAATGGCCGATG
Found at i:41588507 original size:66 final size:66
Alignment explanation
Indices: 41588431--41588562 Score: 237
Period size: 66 Copynumber: 2.0 Consensus size: 66
41588421 ATATGTGATA
* *
41588431 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41588496 G
66 G
*
41588497 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41588562 G
66 G
41588563 TGGTGAATGT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.27, C:0.12, G:0.34, T:0.27
Consensus pattern (66 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
G
Found at i:41588548 original size:213 final size:213
Alignment explanation
Indices: 41588162--41588709 Score: 806
Period size: 213 Copynumber: 2.6 Consensus size: 213
41588152 CACATATATG
* * * * *
41588162 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
41588227 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGCGATGAAT
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATGCGATGAAT
41588292 GTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATGAGGCCTAATGGCCGATGTGATGAA
131 GTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATGAGGCCTAATGGCCGATGTGATGAA
41588357 TGTGAAAGTGGATGTATA
196 TGTGAAAGTGGATGTATA
*
41588375 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
* * *
41588440 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGAGGCCT-A
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATG-CG-ATGA
** ** *
41588504 ATG-G-CCGATGTGATG-A-ATGTGA-AAGTGGATGTATAT-G-TGATGAGGCCTAATGGCCGAT
129 ATGTGAAAG-TG-GATGTATATGTGATAA--GG-CCTA-ATGGCCGATGAGGCCTAATGGCCGAT
* *
41588562 GTGGTGAATGTGAAAGTGTATGTATA
188 GTGATGAATGTGAAAGTGGATGTATA
41588588 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
41588653 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCTAATG
66 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATG
41588710 TAAAATATAT
Statistics
Matches: 307, Mismatches: 20, Indels: 16
0.90 0.06 0.05
Matches are distributed among these distances:
211 2 0.01
212 7 0.02
213 283 0.92
214 12 0.04
215 3 0.01
ACGTcount: A:0.29, C:0.10, G:0.33, T:0.28
Consensus pattern (213 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCAATGCGATGAAT
GTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATGAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGGATGTATA
Found at i:41588580 original size:115 final size:115
Alignment explanation
Indices: 41588267--41588611 Score: 454
Period size: 115 Copynumber: 3.0 Consensus size: 115
41588257 ATATGTGATA
* * *
41588267 AGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
* ** ** *
41588332 GAGGCCT-AATG-G-CCGATGTGATG-A-ATGTGA-AAGTGGATGTATAT-G-TGATG
66 GTGG--TGAATGTGAAAG-TGT-ATGTATATGTGATAA--GG-CCTA-ATGGCCGATG
* *
41588382 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41588447 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
*
41588497 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41588562 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
66 GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
41588612 TGGTGAATGT
Statistics
Matches: 208, Mismatches: 14, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
113 3 0.01
114 10 0.05
115 186 0.89
116 7 0.03
117 2 0.01
ACGTcount: A:0.28, C:0.11, G:0.34, T:0.27
Consensus pattern (115 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
GTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
Found at i:41588856 original size:37 final size:37
Alignment explanation
Indices: 41588806--41588890 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
41588796 GGAATATGTT
*
41588806 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
41588843 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
41588880 CCGGGTAAGAC
1 CCGGGTAAGAC
41588891 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:41590847 original size:17 final size:17
Alignment explanation
Indices: 41590825--41590858 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
41590815 ATATGTGATA
41590825 AGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATG
41590842 AGGCCTAATGGCCGATG
1 AGGCCTAATGGCCGATG
41590859 TGATGAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.35, T:0.18
Consensus pattern (17 bp):
AGGCCTAATGGCCGATG
Found at i:41590854 original size:66 final size:66
Alignment explanation
Indices: 41590776--41590907 Score: 237
Period size: 66 Copynumber: 2.0 Consensus size: 66
41590766 GATAGTGATA
* *
41590776 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41590841 G
66 G
*
41590842 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
41590907 G
66 G
41590908 TGGTGAATGT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.27, C:0.12, G:0.34, T:0.27
Consensus pattern (66 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGAT
G
Found at i:41590894 original size:49 final size:49
Alignment explanation
Indices: 41590842--41591000 Score: 291
Period size: 49 Copynumber: 3.2 Consensus size: 49
41590832 ATGGCCGATG
* * *
41590842 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATG
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
41590891 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
41590940 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
1 AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
41590989 AGGCCTAATGGC
1 AGGCCTAATGGC
41591001 TAATGTAAAA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 107 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
AGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATA
Found at i:41591159 original size:37 final size:37
Alignment explanation
Indices: 41591104--41591186 Score: 148
Period size: 37 Copynumber: 2.2 Consensus size: 37
41591094 AATATGTTCT
*
41591104 GGGTGAGACCCGATGACTACGTGTGGAGATTATGACC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGACC
*
41591141 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGACC
41591178 GGGTAAGAC
1 GGGTAAGAC
41591187 TTCTTTTATA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.25, C:0.18, G:0.35, T:0.22
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGACC
Found at i:41596299 original size:24 final size:24
Alignment explanation
Indices: 41596272--41596339 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
41596262 GAGGGATTCT
* *
41596272 CTATTGCACTAAGTGTGCGATTTA
1 CTATGGCACTATGTGTGCGATTTA
*
41596296 CTATGGCACTATGTGTGTGATTTA
1 CTATGGCACTATGTGTGCGATTTA
*
41596320 CCATGGCACTATGTGTGCGA
1 CTATGGCACTATGTGTGCGA
41596340 ACATAATAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (24 bp):
CTATGGCACTATGTGTGCGATTTA
Found at i:41600352 original size:39 final size:39
Alignment explanation
Indices: 41600271--41600433 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
41600261 TATGGTAACC
** *
41600271 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
41600311 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
41600350 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
41600389 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
41600428 CGCACA
1 CGCACA
41600434 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:41607150 original size:40 final size:39
Alignment explanation
Indices: 41607106--41607298 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
41607096 GTTCAAAACA
* * ** * *
41607106 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
41607146 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
41607186 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
41607225 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
41607264 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
41607299 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:41607217 original size:39 final size:39
Alignment explanation
Indices: 41607136--41607298 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
41607126 TATGGTAACC
* *
41607136 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
41607176 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
41607215 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
41607254 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
41607293 CGCACA
1 CGCACA
41607299 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:41609337 original size:29 final size:27
Alignment explanation
Indices: 41609303--41609405 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 27
41609293 TACTCGATCA
*
41609303 CGCACACTTAGTGCCATGTGATTTAAGCC
1 CGCACACTTAGTGCCAT-T-ATTTAAGCT
* ** *
41609332 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTTAAGCT
*
41609361 CGCACACTTAGTGCCATACATTTCAAGCT
1 CGCACACTTAGTGCCAT-TATTT-AAGCT
*
41609390 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
41609406 ATCTCGTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
28 2 0.03
29 58 0.97
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTTAAGCT
Found at i:41612470 original size:41 final size:39
Alignment explanation
Indices: 41612404--41612678 Score: 162
Period size: 41 Copynumber: 6.9 Consensus size: 39
41612394 TACAATACAT
* * * *
41612404 TGGCACGAAGACTGCCAGGCTCAAAGCCTGATATAACATAC
1 TGGCACAAAGCCTGCTAGGCACAAAGCCTGA-ATAACA-AC
* *
41612445 TGGCATAAAGCCTGCTAGGCACAAAGCCTGATATAATATAC
1 TGGCACAAAGCCTGCTAGGCACAAAGCCTGA-ATAACA-AC
* * * * *
41612486 CGACAC-AAGCCTACTAGGTACAAAGCCTGATATAATACAC
1 TGGCACAAAGCCTGCTAGGCACAAAGCCTGA-ATAACA-AC
*** * * * * *
41612526 CAACACGAAGCCTGTTAGGCACAAATCCTAAAATAATACAC
1 TGGCACAAAGCCTGCTAGGCACAAAGCCT-GAATAACA-AC
* * * *
41612567 TGGCACGAAGCCTGCTAGGCACAGAGCCCGAATATC-AC
1 TGGCACAAAGCCTGCTAGGCACAAAGCCTGAATAACAAC
* * * *
41612605 TGGTACAAAGTCTGCTAGGCATAAAG-CTCGAATATC-AC
1 TGGCACAAAGCCTGCTAGGCACAAAGCCT-GAATAACAAC
* * * *
41612643 TGTCATAAAGTCTGCTAGGCACAGAGCCTGAATAAC
1 TGGCACAAAGCCTGCTAGGCACAAAGCCTGAATAAC
41612679 GTTACGTTTC
Statistics
Matches: 190, Mismatches: 40, Indels: 11
0.79 0.17 0.05
Matches are distributed among these distances:
37 1 0.01
38 59 0.31
39 2 0.01
40 40 0.21
41 87 0.46
42 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.19
Consensus pattern (39 bp):
TGGCACAAAGCCTGCTAGGCACAAAGCCTGAATAACAAC
Found at i:41612620 original size:38 final size:38
Alignment explanation
Indices: 41612560--41612676 Score: 139
Period size: 38 Copynumber: 3.1 Consensus size: 38
41612550 ATCCTAAAAT
* * *
41612560 AATA-CACTGGCACGAAGCCTGCTAGGCACAGAGCCCG
1 AATATCACTGGTACAAAGTCTGCTAGGCACAGAGCCCG
* * *
41612597 AATATCACTGGTACAAAGTCTGCTAGGCATAAAGCTCG
1 AATATCACTGGTACAAAGTCTGCTAGGCACAGAGCCCG
* *
41612635 AATATCACT-GTCATAAAGTCTGCTAGGCACAGAGCCTG
1 AATATCACTGGT-ACAAAGTCTGCTAGGCACAGAGCCCG
41612673 AATA
1 AATA
41612677 ACGTTACGTT
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
37 6 0.09
38 61 0.91
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (38 bp):
AATATCACTGGTACAAAGTCTGCTAGGCACAGAGCCCG
Found at i:41615756 original size:29 final size:29
Alignment explanation
Indices: 41615655--41615748 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
41615645 GTGACGAGAT
41615655 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
41615684 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
41615713 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
41615742 CGGCACT
1 TGGCACT
41615749 GGGTGTGCGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:41615773 original size:58 final size:58
Alignment explanation
Indices: 41615651--41615785 Score: 175
Period size: 58 Copynumber: 2.3 Consensus size: 58
41615641 TACGGTGACG
* *
41615651 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
* **
41615708 ATATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
41615766 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
41615786 GGGCTTAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 3 0.04
58 63 0.94
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAATATACGGCACTAAGTGTGCATGCTCGAA
Found at i:41615856 original size:2 final size:2
Alignment explanation
Indices: 41615849--41615877 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
41615839 GTGCGTACTC
41615849 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
41615878 CCGATCGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:41617485 original size:21 final size:21
Alignment explanation
Indices: 41617451--41617496 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
41617441 CTAAGGTGTG
*
41617451 AATTGGATTGAATTGAATG-TA
1 AATTGGATTAAATTG-ATGTTA
*
41617472 AATTGTATTAAATTGATGTTA
1 AATTGGATTAAATTGATGTTA
41617493 AATT
1 AATT
41617497 CATTCATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.43
Consensus pattern (21 bp):
AATTGGATTAAATTGATGTTA
Found at i:41617960 original size:26 final size:26
Alignment explanation
Indices: 41617931--41617988 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
41617921 CCCGATACAT
*
41617931 GGCTCTTCGTGAGCTTCTCAATTAAA
1 GGCTCTTCGCGAGCTTCTCAATTAAA
* * *
41617957 GGCTCTTTGCGAGCTTCTCGATTAAT
1 GGCTCTTCGCGAGCTTCTCAATTAAA
41617983 GGCTCT
1 GGCTCT
41617989 CCGAAGCTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GGCTCTTCGCGAGCTTCTCAATTAAA
Found at i:41618118 original size:25 final size:24
Alignment explanation
Indices: 41618031--41618123 Score: 78
Period size: 25 Copynumber: 3.8 Consensus size: 24
41618021 TTCTTAATAT
* *
41618031 TGGCTCGTATGAGCTTCCTGTTAA
1 TGGCTCGAATGAGCTTCCTGTTTA
*** *
41618055 TGGCTCCCTTGAGCTTCCCGTTATA
1 TGGCTCGAATGAGCTTCCTGTT-TA
* * *
41618080 TGGCTCAAAAGAGCTTCTTGTTTA
1 TGGCTCGAATGAGCTTCCTGTTTA
41618104 TGTGCTCGAATGAGCATTCC
1 TG-GCTCGAATGAGC-TTCC
41618124 CGAATATAAA
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
24 22 0.42
25 27 0.52
26 3 0.06
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (24 bp):
TGGCTCGAATGAGCTTCCTGTTTA
Found at i:41618824 original size:22 final size:22
Alignment explanation
Indices: 41618798--41618842 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
41618788 ATTATGTGTA
41618798 TTAATTCATGATATAA-TTAATT
1 TTAATTCAT-ATATAATTTAATT
* *
41618820 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
41618842 T
1 T
41618843 GGATCAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:41621257 original size:20 final size:20
Alignment explanation
Indices: 41621225--41621276 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
41621215 ATGTGGCTAC
*
41621225 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCTTGTGGCTTGGG
*
41621245 ACATGCCCTTGTGGCTTGGG
1 ACACGCCCTTGTGGCTTGGG
41621265 ACACGCCCTTGT
1 ACACGCCCTTGT
41621277 CCTCAGCTCG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.12, C:0.31, G:0.33, T:0.25
Consensus pattern (20 bp):
ACACGCCCTTGTGGCTTGGG
Found at i:41621814 original size:30 final size:30
Alignment explanation
Indices: 41621780--41621865 Score: 91
Period size: 30 Copynumber: 3.2 Consensus size: 30
41621770 TCCACACGAA
41621780 TTTCATATTCATTCATCATGATAAACCTAC
1 TTTCATATTCATTCATCATGATAAACCTAC
* *
41621810 TTTCA-ATT--TAC-TCA--AT-TA--TAC
1 TTTCATATTCATTCATCATGATAAACCTAC
41621831 TTTCATATTCATTCATCATGATAAACCTAC
1 TTTCATATTCATTCATCATGATAAACCTAC
41621861 TTTCA
1 TTTCA
41621866 ATTTACTCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
21 8 0.19
22 3 0.07
23 1 0.02
24 4 0.09
25 3 0.07
26 3 0.07
27 4 0.09
28 1 0.02
29 3 0.07
30 13 0.30
ACGTcount: A:0.33, C:0.22, G:0.02, T:0.43
Consensus pattern (30 bp):
TTTCATATTCATTCATCATGATAAACCTAC
Found at i:41621839 original size:51 final size:51
Alignment explanation
Indices: 41621780--41621881 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
41621770 TCCACACGAA
41621780 TTTCATATTCATTCATCATGATAAACCTACTTTCAATTTACTCAATTATAC
1 TTTCATATTCATTCATCATGATAAACCTACTTTCAATTTACTCAATTATAC
41621831 TTTCATATTCATTCATCATGATAAACCTACTTTCAATTTACTCAATTATAC
1 TTTCATATTCATTCATCATGATAAACCTACTTTCAATTTACTCAATTATAC
41621882 CATAGCTTTG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.33, C:0.22, G:0.02, T:0.43
Consensus pattern (51 bp):
TTTCATATTCATTCATCATGATAAACCTACTTTCAATTTACTCAATTATAC
Found at i:41622388 original size:19 final size:19
Alignment explanation
Indices: 41622364--41622402 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
41622354 CGTGTCATCA
41622364 TAAATTCATAGGCATAACT
1 TAAATTCATAGGCATAACT
*
41622383 TAAATTTATAGGCATAACT
1 TAAATTCATAGGCATAACT
41622402 T
1 T
41622403 CCACATTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (19 bp):
TAAATTCATAGGCATAACT
Found at i:41625753 original size:40 final size:40
Alignment explanation
Indices: 41625698--41625775 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
41625688 CTCTCCTAGG
41625698 AGTTTAATTTAATGTAATTTTTCAAAAAAAATATTTTTTT
1 AGTTTAATTTAATGTAATTTTTCAAAAAAAATATTTTTTT
41625738 AGTTTAATTTAATGTAATTTTTCAAAAAAAATATTTTT
1 AGTTTAATTTAATGTAATTTTTCAAAAAAAATATTTTT
41625776 CTAAGTAGCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (40 bp):
AGTTTAATTTAATGTAATTTTTCAAAAAAAATATTTTTTT
Found at i:41627273 original size:37 final size:37
Alignment explanation
Indices: 41627215--41627285 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
41627205 GCTCAAACGA
*
41627215 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
*
41627252 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGA
41627286 ATATATTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
Found at i:41627555 original size:48 final size:48
Alignment explanation
Indices: 41627431--41627615 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
41627421 GCACATCGCC
* * *
41627431 TACATATTTCACACTAGCCATTCGGCTTTACCAAATAAACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
41627481 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
41627529 TACATATTTCACATTAGCCAGTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
41627577 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
41627616 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 2 0.02
50 40 0.32
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Done.