Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 145 of 425
Found at i:44185450 original size:15 final size:15
Alignment explanation
Indices: 44185432--44185507 Score: 53
Period size: 19 Copynumber: 4.5 Consensus size: 15
44185422 ATTAACATTA
44185432 TTATTATTAATTTGG
1 TTATTATTAATTTGG
*
44185447 TTATTATTTTAATATTTCG
1 TTATTA--TT-A-ATTTGG
* *
44185466 ATATTATAGAACTTTTGTG
1 TTATTAT-TAA--TTTG-G
44185485 TTATTATTAATTTGG
1 TTATTATTAATTTGG
44185500 TTATTATT
1 TTATTATT
44185508 TTAGTTCTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 16
0.68 0.09 0.23
Matches are distributed among these distances:
15 15 0.32
16 5 0.11
17 4 0.09
18 6 0.13
19 17 0.36
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.59
Consensus pattern (15 bp):
TTATTATTAATTTGG
Found at i:44189225 original size:34 final size:35
Alignment explanation
Indices: 44189169--44189234 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 35
44189159 ATCTCAGTAC
44189169 AGTATCAAATATGCAGTAGGGCCTTAGCCTATTAT
1 AGTATCAAATATGCAGTAGGGCCTTAGCCTATTAT
* * *
44189204 AGTATC-AGTATGCATTGGGGCCTTAGCCTAT
1 AGTATCAAATATGCAGTAGGGCCTTAGCCTAT
44189235 CACAGAATCA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 22 0.79
35 6 0.21
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (35 bp):
AGTATCAAATATGCAGTAGGGCCTTAGCCTATTAT
Found at i:44189245 original size:34 final size:34
Alignment explanation
Indices: 44189178--44189247 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 34
44189168 CAGTATCAAA
* * *
44189178 TATGCAGTAGGGCCTTAGCCTATTATAGTATCAG
1 TATGCAGTAGGGCCTTAGCCTATCACAGAATCAG
* *
44189212 TATGCATTGGGGCCTTAGCCTATCACAGAATCAG
1 TATGCAGTAGGGCCTTAGCCTATCACAGAATCAG
44189246 TA
1 TA
44189248 GTAGTCATGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (34 bp):
TATGCAGTAGGGCCTTAGCCTATCACAGAATCAG
Found at i:44198873 original size:2 final size:2
Alignment explanation
Indices: 44198868--44198905 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
44198858 ATACGTAATG
44198868 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44198906 TATGAAATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44204393 original size:3 final size:3
Alignment explanation
Indices: 44204385--44204486 Score: 52
Period size: 3 Copynumber: 33.3 Consensus size: 3
44204375 ATATATATAA
* * ** * *
44204385 ATT ATT ATT ATT ATT ATT -TGT TTT ATT TTT AAC CTT ATT TTT A-T
1 ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT
44204429 ATT A-T ATAT AGTT ATT -TT ATT ATAT ATT ACTT A-T ATT ATT ATT ATTT
1 ATT ATT AT-T A-TT ATT ATT ATT AT-T ATT A-TT ATT ATT ATT ATT A-TT
44204476 ATT ATAT ATT A
1 ATT AT-T ATT A
44204487 CTTTTCACAA
Statistics
Matches: 76, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
2 9 0.12
3 49 0.64
4 17 0.22
5 1 0.01
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:44204463 original size:29 final size:29
Alignment explanation
Indices: 44204444--44204590 Score: 94
Period size: 29 Copynumber: 5.1 Consensus size: 29
44204434 ATATAGTTAT
44204444 TTTATTATATATTACTTATATTATTATTA
1 TTTATTATATATTACTTATATTATTATTA
* ** *
44204473 TTTATTATATATTACTTTTCACAAAATATTA
1 TTTATTATATATTACTTAT-A-TTATTATTA
* * *
44204504 -TTATTTTACATTA-TTAT-TTATATATCA
1 TTTATTATATATTACTTATATTAT-TATTA
* *
44204531 -TTATTATATTTTTACTTGTATTATATATTTA
1 TTTATTATA-TATTACTTATATTAT-TA-TTA
*
44204562 TTAATTATATA-TA-TTATA-TATTATT-
1 TTTATTATATATTACTTATATTATTATTA
44204587 TTTA
1 TTTA
44204591 CATATACACT
Statistics
Matches: 90, Mismatches: 20, Indels: 20
0.69 0.15 0.15
Matches are distributed among these distances:
25 3 0.03
26 3 0.03
27 13 0.14
28 6 0.07
29 28 0.31
30 21 0.23
31 9 0.10
32 7 0.08
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.60
Consensus pattern (29 bp):
TTTATTATATATTACTTATATTATTATTA
Found at i:44204536 original size:20 final size:19
Alignment explanation
Indices: 44204513--44204587 Score: 51
Period size: 20 Copynumber: 3.5 Consensus size: 19
44204503 ATTATTTTAC
44204513 ATTATTATTTATATATCATT
1 ATTATTATTTATATAT-ATT
* *
44204533 ATTATATTTTTACTTGTATTATAT
1 ATTAT-TATTTA--TATA-TAT-T
*
44204557 ATTTATTAATTATATATATT
1 A-TTATTATTTATATATATT
44204577 ATATATTATTT
1 AT-TATTATTT
44204588 TTACATATAC
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
19 1 0.02
20 14 0.33
21 8 0.19
22 3 0.07
23 5 0.12
24 7 0.17
25 4 0.10
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (19 bp):
ATTATTATTTATATATATT
Found at i:44204595 original size:24 final size:24
Alignment explanation
Indices: 44204523--44204596 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
44204513 ATTATTATTT
44204523 ATATATCATTAT-TA-TATTTTTAC
1 ATATAT-ATTATATATTATTTTTAC
* *
44204546 -T-TGTATTATATATTTATTAATT--
1 ATATATATTATATA-TTATT-TTTAC
44204568 ATATATATTATATATTATTTTTAC
1 ATATATATTATATATTATTTTTAC
44204592 ATATA
1 ATATA
44204597 CACTTTCATA
Statistics
Matches: 39, Mismatches: 4, Indels: 15
0.67 0.07 0.26
Matches are distributed among these distances:
20 5 0.13
21 4 0.10
22 3 0.08
23 10 0.26
24 17 0.44
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.58
Consensus pattern (24 bp):
ATATATATTATATATTATTTTTAC
Found at i:44204652 original size:19 final size:19
Alignment explanation
Indices: 44204636--44204676 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
44204626 TATATTATGT
44204636 TATTTTTATACTATTATATA
1 TATTTTTAT-CTATTATATA
44204656 TATTTTTATCTA-TATAT-
1 TATTTTTATCTATTATATA
44204673 TATT
1 TATT
44204677 ATCATTAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.19
18 5 0.24
19 3 0.14
20 9 0.43
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (19 bp):
TATTTTTATCTATTATATA
Found at i:44204661 original size:20 final size:17
Alignment explanation
Indices: 44204615--44204676 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 17
44204605 TATCATATAT
*
44204615 TATA-ATTA-TTTTATA
1 TATATATTATTTTTATC
*
44204630 T-TATGTTATTTTTATAC
1 TATATATTATTTTTAT-C
44204647 TATTATATATATTTTTATC
1 TA-TATAT-TATTTTTATC
44204666 TATATATTATT
1 TATATATTATT
44204677 ATCATTAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
14 2 0.05
15 4 0.11
16 6 0.16
17 5 0.13
18 5 0.13
19 7 0.18
20 9 0.24
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (17 bp):
TATATATTATTTTTATC
Found at i:44204664 original size:26 final size:28
Alignment explanation
Indices: 44204626--44204678 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 28
44204616 ATAATTATTT
* *
44204626 TATATTATGTTATTTTTATACTATTATA
1 TATATTATGTTATCTATATACTATTATA
*
44204654 TATATT-T-TTATCTATATATTATTAT
1 TATATTATGTTATCTATATACTATTAT
44204679 CATTAAAGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 15 0.68
27 1 0.05
28 6 0.27
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (28 bp):
TATATTATGTTATCTATATACTATTATA
Found at i:44204841 original size:21 final size:23
Alignment explanation
Indices: 44204817--44204875 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
44204807 ATCATTAATT
*
44204817 ACTTATTTTATAT-TATTCTA-A
1 ACTTATTTTATATATATTATATA
44204838 ACTTATATTTATATATATTATATA
1 ACTTAT-TTTATATATATTATATA
44204862 A-TTATTTTAT-TATA
1 ACTTATTTTATATATA
44204876 AATATAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 10 0.29
22 12 0.35
23 10 0.29
24 2 0.06
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (23 bp):
ACTTATTTTATATATATTATATA
Found at i:44208258 original size:48 final size:48
Alignment explanation
Indices: 44208202--44208298 Score: 158
Period size: 48 Copynumber: 2.0 Consensus size: 48
44208192 GCAGAGAGAG
*
44208202 GTCCAAGAGGAAAAAGCTAAAGCCGAGTATTAGGAGAGGAAGTTCCAA
1 GTCCAAGAGGAAAAACCTAAAGCCGAGTATTAGGAGAGGAAGTTCCAA
* * *
44208250 GTCCAAGAGGAAAAACCTAGAGCTGAGTATTGGGAGAGGAAGTTCCAA
1 GTCCAAGAGGAAAAACCTAAAGCCGAGTATTAGGAGAGGAAGTTCCAA
44208298 G
1 G
44208299 AAATGCGGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.39, C:0.14, G:0.31, T:0.15
Consensus pattern (48 bp):
GTCCAAGAGGAAAAACCTAAAGCCGAGTATTAGGAGAGGAAGTTCCAA
Found at i:44212459 original size:12 final size:12
Alignment explanation
Indices: 44212442--44212483 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
44212432 ACATAAACAA
44212442 TCATTCTTAGAT
1 TCATTCTTAGAT
**
44212454 TCATTCATT-CTT
1 TCATTC-TTAGAT
44212466 TCATTCTTAGAT
1 TCATTCTTAGAT
44212478 TCATTC
1 TCATTC
44212484 ATTCTTTGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
11 2 0.08
12 20 0.83
13 2 0.08
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.52
Consensus pattern (12 bp):
TCATTCTTAGAT
Found at i:44212474 original size:24 final size:24
Alignment explanation
Indices: 44212442--44212490 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
44212432 ACATAAACAA
44212442 TCATTCTTAGATTCATTCATTCTT
1 TCATTCTTAGATTCATTCATTCTT
44212466 TCATTCTTAGATTCATTCATTCTT
1 TCATTCTTAGATTCATTCATTCTT
44212490 T
1 T
44212491 GTATATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.04, T:0.55
Consensus pattern (24 bp):
TCATTCTTAGATTCATTCATTCTT
Found at i:44216840 original size:46 final size:46
Alignment explanation
Indices: 44216788--44217008 Score: 336
Period size: 46 Copynumber: 4.8 Consensus size: 46
44216778 TTCTGAAATG
*
44216788 AAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACAGGATATA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
* *
44216834 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
*
44216880 AAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
* ***
44216926 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-CGG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
* **
44216971 GAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
44217009 CTAACAGAAA
Statistics
Matches: 161, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
45 35 0.22
46 126 0.78
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
Found at i:44216942 original size:92 final size:91
Alignment explanation
Indices: 44216784--44217008 Score: 371
Period size: 92 Copynumber: 2.5 Consensus size: 91
44216774 TGCTTTCTGA
* *
44216784 AATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACAGGATATAAAATGTGTAAGACCA
1 AATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCA
44216849 TGGTTGAAAGATACCATGGCAACATG
66 TGGTTGAAAGATACCATGGCAACATG
44216875 ATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACC
1 A-ATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACC
44216940 ATGGTTGAAAGATACCATGGCAACATG
65 ATGGTTGAAAGATACCATGGCAACATG
** * *
44216967 ACGGGAATGA-ATAAGACCATGGTTGAAAGATACCATGGCAAC
1 AATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAAC
44217009 CTAACAGAAA
Statistics
Matches: 126, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
91 36 0.29
92 90 0.71
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.21
Consensus pattern (91 bp):
AATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCA
TGGTTGAAAGATACCATGGCAACATG
Found at i:44217038 original size:137 final size:138
Alignment explanation
Indices: 44216788--44217052 Score: 372
Period size: 137 Copynumber: 1.9 Consensus size: 138
44216778 TTCTGAAATG
* **
44216788 AAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACAGGATATAAAATGTGTAAGACCATGGT
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACAGGATAGAAAATGAATAAGACCATGGT
* * * * *
44216853 TGAAAGATACCATGGCAACATGATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATAACATGAAATAAGTAAGACCATAGTTGAAAGACACCATGGCAAC
44216918 AGGATATA
131 AGGATATA
* * * **
44216926 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-CGGGAATGAATAAGACCATGGT
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACAGGATAGAAAATGAATAAGACCATGGT
* *
44216990 TGAAAGATACCATGGCAACCTAACA-GAAAATAAGTAAGACCATAGTTGAAAGACACTATGGCA
66 TGAAAGATACCATGGCAACATAACATG-AAATAAGTAAGACCATAGTTGAAAGACACCATGGCA
44217053 TCATGTCAAA
Statistics
Matches: 111, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
136 1 0.01
137 70 0.63
138 40 0.36
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (138 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGAAACAGGATAGAAAATGAATAAGACCATGGT
TGAAAGATACCATGGCAACATAACATGAAATAAGTAAGACCATAGTTGAAAGACACCATGGCAAC
AGGATATA
Found at i:44217051 original size:46 final size:46
Alignment explanation
Indices: 44216794--44217075 Score: 302
Period size: 46 Copynumber: 6.2 Consensus size: 46
44216784 AATGAAATGT
* * * * **
44216794 GTAAGACCATGGTTGAAAGATACCATGGAAACAGGATATAAAATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATAA
* *
44216840 GTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG-AAATAT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATAA
* * * **
44216886 GTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGT
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATAA
**
44216932 GTAAGACCATGGTTGAAAGATACCATGGCAACATGAC-GGGAATGAA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT-AA
* *
44216978 -TAAGACCATGGTTGAAAGATACCATGGCAACCTAACAGAAAATAA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATAA
* * * * * *
44217023 GTAAGACCATAGTTGAAAGACACTATGGCATCATGTCA-AAGATAA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATAA
*
44217068 ATAAGACC
1 GTAAGACC
44217076 GTGGATGGGA
Statistics
Matches: 204, Mismatches: 27, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
45 52 0.25
46 152 0.75
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.21
Consensus pattern (46 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATAA
Found at i:44217071 original size:91 final size:91
Alignment explanation
Indices: 44216795--44217075 Score: 343
Period size: 91 Copynumber: 3.1 Consensus size: 91
44216785 ATGAAATGTG
*
44216795 TAAGACCATGGTTGAAAGATACCATGGAAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGA
**
44216860 TACCATGGCAACATGAT-ATGAA-ATATG
66 TACCATGGCAACATG-TCA--AAGATAAA
44216887 TAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGA
* ** *
44216952 TACCATGGCAACATGAC-GGGAATGAA
66 TACCATGGCAACATGTCAAAG-ATAAA
*** * * ** *
44216978 TAAGACCATGGTTGAAAGATACCATGGCAACCTAACAGAAAATAAGTAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGA
* * *
44217043 CACTATGGCATCATGTCAAAGATAAA
66 TACCATGGCAACATGTCAAAGATAAA
44217069 TAAGACC
1 TAAGACC
44217076 GTGGATGGGA
Statistics
Matches: 163, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
91 83 0.51
92 80 0.49
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.21
Consensus pattern (91 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCATGGTTGAAAGA
TACCATGGCAACATGTCAAAGATAAA
Found at i:44217359 original size:16 final size:17
Alignment explanation
Indices: 44217338--44217370 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
44217328 ATGATGGAGC
44217338 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
44217354 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
44217371 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:44221172 original size:175 final size:175
Alignment explanation
Indices: 44220881--44221238 Score: 563
Period size: 175 Copynumber: 2.0 Consensus size: 175
44220871 TTTATACTGA
* * *
44220881 AGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATATCTGATTT
1 AGCAGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAGCAAATCAAAGACATAGCTGATTT
*
44220946 GGCTTTGACCTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTAAGAGAAC
66 GGCTTTCACCTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTAAGAGAAC
*
44221011 AAATCGAAGTTTGGCGTCTCTATATTCAACAGAGGGCAGACACAT
131 AAATCGAAGTTTGGCGTCTCCATATTCAACAGAGGGCAGACACAT
*
44221056 AGCAGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAGTAAATCAAAGACATAGCTGATTT
1 AGCAGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAGCAAATCAAAGACATAGCTGATTT
* * ** * **
44221121 GGCTTTCACGTGCTTATGTTGGAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCGGAGAAC
66 GGCTTTCACCTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTAAGAGAAC
* * *
44221186 AAATCGAAGTTTGGTGTCTCCATATTCGACAGAGTGCAGACACAT
131 AAATCGAAGTTTGGCGTCTCCATATTCAACAGAGGGCAGACACAT
*
44221231 AGTAGATC
1 AGCAGATC
44221239 TAACCTTCAG
Statistics
Matches: 166, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
175 166 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (175 bp):
AGCAGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAGCAAATCAAAGACATAGCTGATTT
GGCTTTCACCTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTAAGAGAAC
AAATCGAAGTTTGGCGTCTCCATATTCAACAGAGGGCAGACACAT
Found at i:44221381 original size:381 final size:379
Alignment explanation
Indices: 44220680--44221400 Score: 1111
Period size: 381 Copynumber: 1.9 Consensus size: 379
44220670 ATACTGAAGT
* *
44220680 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGC
*
44220745 TTTCACGGTTTACATTGAAGCAAATATAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
66 TTTCACGGCTTACATTGAAGCAAATATAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
* * * *
44220810 CGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATATATAGCAGATCTAACCTTCAAATGTTTA
131 CGAAGTCTGGCATCTCCATTTCGACAGAGAGCAGACACATAGCAGATCTAACCTTCAAATGATTA
* * *
44220875 TACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATATC
196 GACTGAAGCAGATCCAAGATGGTTCGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAAC
*
44220940 TGATTTGGCTTTGACCTGCTTACGTTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTAA
261 TGATTTGGCTTTGACCTGCTTACGCTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTAA
44221005 GAGAACAAATCGAAGTTTGGCGTCTCTATATTCAACAGAGGGCAGACACATAGC
326 GAGAACAAATCGAAGTTTGGCGTCTCTATATTCAACAGAGGGCAGACACATAGC
**
44221059 AGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAGTAAATCAAAGACATAGCTGATTTGGC
1 AGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGC
** * * * *
44221124 TTTCACGTGCTTATGTTGGAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCGGAGAACAAA
66 TTTCACG-GCTTACATTGAAGCAAATATAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* ** * * *
44221189 TCGAAGTTTGGTGTCTCCATATTCGACAGAGTGCAGACACATAGTAGATCTAACCTTCAGATGAT
130 TCGAAGTCTGGCATCTCCAT-TTCGACAGAGAGCAGACACATAGCAGATCTAACCTTCAAATGAT
* * *
44221254 TAGACTGAAGTAGATCCAGGATGGTTCGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATA
194 TAGACTGAAGCAGATCCAAGATGGTTCGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATA
* * **
44221319 ACTGATTTGGTTTTCG-CGTGCTTACGCTGGAGCAAATCTAAGATGATTTGGCATCTCTGTATTG
259 ACTGATTTGGCTTT-GACCTGCTTACGCTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTG
*
44221383 TCAGAGAACAAATCGAAG
323 TAAGAGAACAAATCGAAG
44221401 AAGCAGATTC
Statistics
Matches: 306, Mismatches: 33, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
379 68 0.22
380 67 0.22
381 170 0.56
382 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (379 bp):
AGATCCAAGATGGTTTGGCATCCTTATGCTTACAAGGAACAAATCAAAGACATAGCTGATTTGGC
TTTCACGGCTTACATTGAAGCAAATATAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
CGAAGTCTGGCATCTCCATTTCGACAGAGAGCAGACACATAGCAGATCTAACCTTCAAATGATTA
GACTGAAGCAGATCCAAGATGGTTCGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAAC
TGATTTGGCTTTGACCTGCTTACGCTAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTAA
GAGAACAAATCGAAGTTTGGCGTCTCTATATTCAACAGAGGGCAGACACATAGC
Found at i:44222990 original size:3 final size:3
Alignment explanation
Indices: 44222982--44223080 Score: 53
Period size: 3 Copynumber: 32.3 Consensus size: 3
44222972 ATATATATAA
* * ** * *
44222982 ATT ATT ATT ATT ATT -TGT TTT ATT TTT AAC CTT ATT TTT A-T ATT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
44223026 ATAT ATA ATT ATT -TT ATT ATAT ATT ACTT A-T ATT ATT ATT ATTT ATT
1 AT-T ATT ATT ATT ATT ATT AT-T ATT A-TT ATT ATT ATT ATT A-TT ATT
44223073 ATAT ATT A
1 AT-T ATT A
44223081 CTTTTCACAA
Statistics
Matches: 73, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
2 7 0.10
3 50 0.68
4 16 0.22
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:44223057 original size:29 final size:29
Alignment explanation
Indices: 44223024--44223083 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
44223014 TATTTTTATA
44223024 TTATA-TATAATTATTTTATTATATATTAC
1 TTATATTATAATTA-TTTATTATATATTAC
*
44223053 TTATATTATTATTATTTATTATATATTAC
1 TTATATTATAATTATTTATTATATATTAC
44223082 TT
1 TT
44223084 TTCACAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 22 0.76
30 7 0.24
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (29 bp):
TTATATTATAATTATTTATTATATATTAC
Found at i:44223130 original size:20 final size:19
Alignment explanation
Indices: 44223107--44223181 Score: 51
Period size: 20 Copynumber: 3.5 Consensus size: 19
44223097 ATTATTTTAC
44223107 ATTATTATTTATATATCATT
1 ATTATTATTTATATAT-ATT
* *
44223127 ATTATATTTTTACTTGTATTATAT
1 ATTAT-TATTTA--TATA-TAT-T
*
44223151 ATTTATTAATTATATATATT
1 A-TTATTATTTATATATATT
44223171 ATATATTATTT
1 AT-TATTATTT
44223182 TTACATATAC
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
19 1 0.02
20 14 0.33
21 8 0.19
22 3 0.07
23 5 0.12
24 7 0.17
25 4 0.10
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (19 bp):
ATTATTATTTATATATATT
Found at i:44223189 original size:24 final size:24
Alignment explanation
Indices: 44223117--44223190 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
44223107 ATTATTATTT
44223117 ATATATCATTAT-TA-TATTTTTAC
1 ATATAT-ATTATATATTATTTTTAC
* *
44223140 -T-TGTATTATATATTTATTAATT--
1 ATATATATTATATA-TTATT-TTTAC
44223162 ATATATATTATATATTATTTTTAC
1 ATATATATTATATATTATTTTTAC
44223186 ATATA
1 ATATA
44223191 CACTTTCATA
Statistics
Matches: 39, Mismatches: 4, Indels: 15
0.67 0.07 0.26
Matches are distributed among these distances:
20 5 0.13
21 4 0.10
22 3 0.08
23 10 0.26
24 17 0.44
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.58
Consensus pattern (24 bp):
ATATATATTATATATTATTTTTAC
Found at i:44223246 original size:19 final size:19
Alignment explanation
Indices: 44223230--44223270 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
44223220 TATATTATGT
44223230 TATTTTTATACTATTATATA
1 TATTTTTAT-CTATTATATA
44223250 TATTTTTATCTA-TATAT-
1 TATTTTTATCTATTATATA
44223267 TATT
1 TATT
44223271 ATCATTAACG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.19
18 5 0.24
19 3 0.14
20 9 0.43
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (19 bp):
TATTTTTATCTATTATATA
Found at i:44223255 original size:20 final size:17
Alignment explanation
Indices: 44223209--44223270 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 17
44223199 TATCATATAT
*
44223209 TATA-ATTA-TTTTATA
1 TATATATTATTTTTATC
*
44223224 T-TATGTTATTTTTATAC
1 TATATATTATTTTTAT-C
44223241 TATTATATATATTTTTATC
1 TA-TATAT-TATTTTTATC
44223260 TATATATTATT
1 TATATATTATT
44223271 ATCATTAACG
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
14 2 0.05
15 4 0.11
16 6 0.16
17 5 0.13
18 5 0.13
19 7 0.18
20 9 0.24
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (17 bp):
TATATATTATTTTTATC
Found at i:44223258 original size:26 final size:28
Alignment explanation
Indices: 44223220--44223272 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 28
44223210 ATAATTATTT
* *
44223220 TATATTATGTTATTTTTATACTATTATA
1 TATATTATGTTATCTATATACTATTATA
*
44223248 TATATT-T-TTATCTATATATTATTAT
1 TATATTATGTTATCTATATACTATTAT
44223273 CATTAACGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 15 0.68
27 1 0.05
28 6 0.27
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (28 bp):
TATATTATGTTATCTATATACTATTATA
Found at i:44223820 original size:2 final size:2
Alignment explanation
Indices: 44223813--44223841 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
44223803 ATTACCCTTT
44223813 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
44223842 TAAATTGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:44229480 original size:30 final size:30
Alignment explanation
Indices: 44229446--44229507 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
44229436 CTTGCATTCG
*
44229446 TGTATTAACTTTCAATTTTAGCCATTTTCA
1 TGTATTAACTTTCAATATTAGCCATTTTCA
44229476 TGTATTAACTTTCAATATTAGCCATTTTCA
1 TGTATTAACTTTCAATATTAGCCATTTTCA
44229506 TG
1 TG
44229508 GCCTTATACA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.16, G:0.08, T:0.48
Consensus pattern (30 bp):
TGTATTAACTTTCAATATTAGCCATTTTCA
Found at i:44232994 original size:40 final size:40
Alignment explanation
Indices: 44232892--44233075 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
44232882 AAATTGAATG
* * * * *
44232892 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
44232932 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
44232972 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
44233012 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
44233052 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
44233076 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.95
41 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:44233100 original size:80 final size:80
Alignment explanation
Indices: 44232934--44233120 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
44232924 TGAAAATTAT
* * *
44232934 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
* *
44232999 CGTGCAAGTTGTTAA
66 CGTGCAAGTTATCAA
* * * * * *
44233014 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGGCAT
* **
44233078 TGGTGCGGGTTATCATA
65 TCGTGCAAGTTATCA-A
* * *
44233095 A-CCGGGCTATGTCCCGAAGGCGATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
44233121 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 84 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTATCAA
Found at i:44244176 original size:40 final size:40
Alignment explanation
Indices: 44244144--44244489 Score: 587
Period size: 40 Copynumber: 8.8 Consensus size: 40
44244134 CCAGCATGAT
* * *
44244144 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
44244184 TGCTCTTCGGG--TTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
44244222 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44244262 TGCTCTTC-GGACTTAG-CCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44244300 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44244340 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
44244380 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44244419 TGCTCTTCGGGACTTAG-CCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44244458 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
44244490 CTCAATTCTC
Statistics
Matches: 289, Mismatches: 11, Indels: 12
0.93 0.04 0.04
Matches are distributed among these distances:
38 62 0.21
39 91 0.31
40 136 0.47
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:44244246 original size:78 final size:78
Alignment explanation
Indices: 44244144--44244489 Score: 572
Period size: 78 Copynumber: 4.4 Consensus size: 78
44244134 CCAGCATGAT
* * *
44244144 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGG-TTAGCACGGATAT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTAGC-CGGATAT
44244208 ATCACTAGCACGAA
65 ATCACTAGCACGAA
* *
44244222 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGACTTAGCCGGATAT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA-TTAGCCGGATAT
44244286 ATCACTAGCACGAA
65 ATCACTAGCACGAA
44244300 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA-TTAG-CCGGATA
44244365 TATCACTAGCACGAA
64 TATCACTAGCACGAA
*
44244380 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATAT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA-TTAGCCGGATAT
44244444 ATCACTAGCACGAA
65 ATCACTAGCACGAA
44244458 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
44244490 CTCAATTCTC
Statistics
Matches: 254, Mismatches: 9, Indels: 9
0.93 0.03 0.03
Matches are distributed among these distances:
77 2 0.01
78 140 0.55
79 82 0.32
80 30 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTAGCCGGATATA
TCACTAGCACGAA
Found at i:44244331 original size:118 final size:119
Alignment explanation
Indices: 44244144--44244489 Score: 592
Period size: 118 Copynumber: 2.9 Consensus size: 119
44244134 CCAGCATGAT
* * * *
44244144 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGG--TTAGCACGGATA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
* *
44244207 TATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
65 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44244262 TGCTCTTCGGACTTAG-CCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
44244326 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
66 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
44244380 TGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATAT
1 TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
44244444 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
66 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
44244490 CTCAATTCTC
Statistics
Matches: 218, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
116 31 0.14
117 7 0.03
118 142 0.65
119 38 0.17
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (119 bp):
TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:44245811 original size:37 final size:37
Alignment explanation
Indices: 44245752--44245860 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
44245742 AGCTCAGACG
* *
44245752 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
44245789 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
44245826 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
44245861 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:44246099 original size:50 final size:50
Alignment explanation
Indices: 44246009--44246154 Score: 226
Period size: 50 Copynumber: 3.0 Consensus size: 50
44245999 CATCGCCTAC
* *
44246009 ATATTTCACA-CTAGCCATTCGG-TTTACCACATATACATATCTCATATAT
1 ATATTTCACATTTA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
44246058 ATATTTCACATTTACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACATTTACCATTCGGCTTTACCACATATGCATATCTCATATAT
* *
44246108 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATGT-TCATAT
1 ATATTTCACATTTACCATTCGGCTTTACCACATATGCATATCTCATAT
44246155 TCACCACATT
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
49 24 0.26
50 67 0.74
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (50 bp):
ATATTTCACATTTACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:44246164 original size:45 final size:47
Alignment explanation
Indices: 44246114--44246210 Score: 135
Period size: 47 Copynumber: 2.1 Consensus size: 47
44246104 ATATATATTT
* * *
44246114 CACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCAC
1 CACATTGACCATTCGGCCTTATCACACATATGCATGCTCACATTCAC
* *
44246159 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGACCATTCGGCCTTATCACACATATGCATGCTCACATTCAC
44246206 CACAT
1 CACAT
44246211 AAAATCCTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
45 19 0.42
46 1 0.02
47 25 0.56
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (47 bp):
CACATTGACCATTCGGCCTTATCACACATATGCATGCTCACATTCAC
Found at i:44246204 original size:47 final size:45
Alignment explanation
Indices: 44246064--44246210 Score: 132
Period size: 50 Copynumber: 3.1 Consensus size: 45
44246054 ATATATATTT
* * * * * *
44246064 CACATTTACCATTCGGCTTTACCACATATGCATATCTCATATATATATTT
1 CACATTGACCATTCGGCCTTACCACATATGCAT-GCTCACAT-T-CA--C
* * *
44246114 CACATTGACCATTCGGCTTTACCACATATGCATGTTCATATTCAC
1 CACATTGACCATTCGGCCTTACCACATATGCATGCTCACATTCAC
* *
44246159 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGACCATTCGGCCTTA-C-CACATATGCATGCTCACATTCAC
44246206 CACAT
1 CACAT
44246211 AAAATCCTAA
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
45 19 0.22
46 1 0.01
47 26 0.31
48 1 0.01
49 6 0.07
50 32 0.38
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (45 bp):
CACATTGACCATTCGGCCTTACCACATATGCATGCTCACATTCAC
Found at i:44249440 original size:23 final size:23
Alignment explanation
Indices: 44249406--44249460 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
44249396 ATTTGATTTT
* *
44249406 TAAT-TTTTGAATTACTTAGTGA
1 TAATATTTAGAATTACTTAATGA
*
44249428 TAATATTTAGAATTATTTAATGA
1 TAATATTTAGAATTACTTAATGA
44249451 TAATATTTAG
1 TAATATTTAG
44249461 GAAAAATCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 4 0.14
23 25 0.86
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (23 bp):
TAATATTTAGAATTACTTAATGA
Found at i:44252172 original size:34 final size:34
Alignment explanation
Indices: 44252128--44252202 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
44252118 ATAAATGTAT
* *
44252128 ATATATATTCA-TCTTCGGTTATATCAAACCATAC
1 ATATATATTCACT-TTCGATTATACCAAACCATAC
* * *
44252162 ATATGTATTCACTTTCTATTATACCAAACTATAC
1 ATATATATTCACTTTCGATTATACCAAACCATAC
44252196 ATATATA
1 ATATATA
44252203 ATTATGTACT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
34 33 0.97
35 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.04, T:0.40
Consensus pattern (34 bp):
ATATATATTCACTTTCGATTATACCAAACCATAC
Found at i:44270701 original size:71 final size:71
Alignment explanation
Indices: 44270617--44270780 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
44270607 CGATTTGTCT
44270617 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
44270682 CTTTCA
66 CTTTCA
44270688 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
44270753 CTTTCA
66 CTTTCA
44270759 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
44270781 GATACATTTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:44270818 original size:71 final size:70
Alignment explanation
Indices: 44270617--44270814 Score: 265
Period size: 71 Copynumber: 2.8 Consensus size: 70
44270607 CGATTTGTCT
* * * *
44270617 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTG-CATACACTTCGAATCACACATGCGACCTAGCTACATTTAT
44270682 CTTTCA
65 CTTTCA
* * * *
44270688 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTG-CATACACTTCGAATCACACATGCGACCTAGCTACATTTAT
44270753 CTTTCA
65 CTTTCA
* * *
44270759 CGTAGCTCTCTTGTCTACATGG-G-ATACATTTCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTGCATACACTTCGAATCACACATGCGACCTAGCTAC
44270815 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
68 26 0.22
70 1 0.01
71 93 0.77
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGCATACACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:44273999 original size:40 final size:40
Alignment explanation
Indices: 44273934--44274141 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
44273924 TCTTCGGAAT
* * *
44273934 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * * *
44273973 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *
44274013 TTAGCCCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
44274053 TTAACCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
44274093 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
44274133 TTAGCCCGG
1 TTAGCCCGG
44274142 GTATCATTCA
Statistics
Matches: 144, Mismatches: 23, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
39 3 0.02
40 140 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:44274034 original size:80 final size:80
Alignment explanation
Indices: 44273934--44274145 Score: 345
Period size: 80 Copynumber: 2.7 Consensus size: 80
44273924 TCTTCGGAAT
*
44273934 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTCGCAC
44273998 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
44274013 TTAGCCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATATAACAACTCGCAC
1 TTAGCCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTCGCAC
44274078 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * * * *
44274093 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 TTAGCCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTAT
44274146 CATTCAAATG
Statistics
Matches: 123, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 4 0.03
80 119 0.97
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTCGCAC
AAATGCCTTCGGGTC
Found at i:44276238 original size:41 final size:41
Alignment explanation
Indices: 44276139--44276231 Score: 150
Period size: 41 Copynumber: 2.3 Consensus size: 41
44276129 TTATAGCTAA
* * *
44276139 CTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCG
1 CTAATGCTCTGGTTTTTAGCAGCGTTTTACCAAAAACACCG
44276180 CTAATGCTCTGGTTTTTAGCAGCGTTTTACCAAAAACACCG
1 CTAATGCTCTGGTTTTTAGCAGCGTTTTACCAAAAACACCG
*
44276221 CTATTGCTCTG
1 CTAATGCTCTG
44276232 TATTTTATAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (41 bp):
CTAATGCTCTGGTTTTTAGCAGCGTTTTACCAAAAACACCG
Found at i:44278505 original size:18 final size:19
Alignment explanation
Indices: 44278482--44278526 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
44278472 TTAAGCATTT
*
44278482 TTTATTTTCA-TCCTTTTA
1 TTTATTTTCAGTCATTTTA
* *
44278500 TTTATTTTGAGTTATTTTA
1 TTTATTTTCAGTCATTTTA
44278519 TTTATTTT
1 TTTATTTT
44278527 GTTGTTGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.71
Consensus pattern (19 bp):
TTTATTTTCAGTCATTTTA
Found at i:44285202 original size:53 final size:54
Alignment explanation
Indices: 44285139--44285340 Score: 212
Period size: 55 Copynumber: 3.7 Consensus size: 54
44285129 TTTTGAACAT
* *
44285139 ACCATTGCCATGTCTTGACATGGTCTTA-AGTGGTATCCTTGCCTTAT-GAACTC
1 ACCAATGCCATGCCTTGACATGGTCTTACA-TGGTATCCTTGCCTTATAGAACTC
* *
44285192 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCATTGCCTTATAGTAACTC
1 ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTC
* * * * * * * *
44285247 ATCAATGCCATGTCTTGAAATGGTCTTACATGATTTCCTTGCCTTTTAAAACTT
1 ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTC
* * * *
44285301 ATCAATTCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
44285341 ATCTTACCGA
Statistics
Matches: 125, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 38 0.30
54 41 0.33
55 42 0.34
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
ACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTC
Found at i:44286661 original size:2 final size:2
Alignment explanation
Indices: 44286654--44286682 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
44286644 ATAATTTGTG
44286654 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
44286683 AGTTAAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:44287863 original size:44 final size:43
Alignment explanation
Indices: 44287782--44287868 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 43
44287772 GTTACATTAA
* *
44287782 CCGTCAATTCCTCCTTAAATGCCATGTTATGAACATGGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTATCAACATGGA-TTTT
* *
44287826 CCGTCAATTCTTCCTTAATTGCCATGGTA-CAACCATGGATTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTATCAA-CATGGATTTT
44287869 GAGATATCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 6 0.16
44 32 0.84
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (43 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTATCAACATGGATTTT
Found at i:44294235 original size:54 final size:54
Alignment explanation
Indices: 44294069--44294252 Score: 196
Period size: 55 Copynumber: 3.4 Consensus size: 54
44294059 CATGTCTTAA
* * * *
44294069 CATGGTCTCACGTGGTATCCTTGCCTTAT-GAACTCA-CTAATTCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATC-AATTCCATGCCTTTG
* ** * * *
44294122 CATGCTCTTACATGGGA-CCTTTACCTTATAGTAAGTCATCAATTCCATGTC-TTG
1 CATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATTCCATGCCTTTG
* *
44294176 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATTCCATGCCTTTG
1 -CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATTCCATGCCTTTG
44294231 CATGGTCTTACATGATATCCTT
1 CATGGTCTTACATGATATCCTT
44294253 ATCTCACCAA
Statistics
Matches: 107, Mismatches: 17, Indels: 13
0.78 0.12 0.09
Matches are distributed among these distances:
52 2 0.02
53 21 0.20
54 40 0.37
55 41 0.38
56 3 0.03
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (54 bp):
CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATTCCATGCCTTTG
Found at i:44297212 original size:51 final size:51
Alignment explanation
Indices: 44297140--44297315 Score: 343
Period size: 51 Copynumber: 3.5 Consensus size: 51
44297130 TACATAATGG
44297140 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
44297191 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
44297242 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
44297293 TATATGTGATAAGGCCGAATGGC
1 TATATGTGATAAGGCCTAATGGC
44297316 TAATGTGAAA
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
51 124 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.31
Consensus pattern (51 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:44297359 original size:48 final size:48
Alignment explanation
Indices: 44297288--44297420 Score: 212
Period size: 48 Copynumber: 2.8 Consensus size: 48
44297278 GTGAAAGTGT
* * *
44297288 ATATATATATGTGATAAGGCCGAATGGCTAATGTGAAATATATATAAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAAG
* **
44297336 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAAG
44297384 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
44297421 TGTTGTAATA
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 79 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAAG
Found at i:44299071 original size:44 final size:44
Alignment explanation
Indices: 44299022--44299106 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
44299012 ATCTTTAACT
* *
44299022 GTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCC
1 GTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTTCC
* *
44299066 GTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
44299107 GAGATATCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (44 bp):
GTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTTCC
Found at i:44304576 original size:55 final size:55
Alignment explanation
Indices: 44304510--44304620 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
44304500 AACCCTAATC
*
44304510 TGGTGTTGGATATGGGTTAGGGGTGTTACATTTAGTTAGTATCAGAGTTATGGTT
1 TGGTGTTGGATATGGGTTAGGGGTGTTACATTTAGTTAGTATCAGAGCTATGGTT
44304565 TGGTGTTGGATATGGGTTAGGGGTGTTACATTTAGTTAGTATCAGAGCTATGGTT
1 TGGTGTTGGATATGGGTTAGGGGTGTTACATTTAGTTAGTATCAGAGCTATGGTT
44304620 T
1 T
44304621 AGTCAGTTCT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.20, C:0.05, G:0.34, T:0.41
Consensus pattern (55 bp):
TGGTGTTGGATATGGGTTAGGGGTGTTACATTTAGTTAGTATCAGAGCTATGGTT
Found at i:44315337 original size:21 final size:21
Alignment explanation
Indices: 44315311--44315367 Score: 114
Period size: 21 Copynumber: 2.7 Consensus size: 21
44315301 AACAGAAGTC
44315311 ACACGCCCGTGTGGATATGGG
1 ACACGCCCGTGTGGATATGGG
44315332 ACACGCCCGTGTGGATATGGG
1 ACACGCCCGTGTGGATATGGG
44315353 ACACGCCCGTGTGGA
1 ACACGCCCGTGTGGA
44315368 CAGGCCGTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.19, C:0.26, G:0.37, T:0.18
Consensus pattern (21 bp):
ACACGCCCGTGTGGATATGGG
Found at i:44315830 original size:12 final size:12
Alignment explanation
Indices: 44315813--44315850 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
44315803 TTATTATAGT
44315813 AAATGATAATTA
1 AAATGATAATTA
44315825 AAATGATAATT-
1 AAATGATAATTA
*
44315836 AAATGA-AAATA
1 AAATGATAATTA
44315847 AAAT
1 AAAT
44315851 ACAAAATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
10 3 0.12
11 10 0.42
12 11 0.46
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (12 bp):
AAATGATAATTA
Found at i:44316132 original size:20 final size:20
Alignment explanation
Indices: 44316083--44316132 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
44316073 ATGTGTATTT
*
44316083 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTGTTGATAGATTA
*
44316103 TGAATATTTGTTGATAG-TTA
1 TGAA-GTTTGTTGATAGATTA
44316123 TGTAAGTTTG
1 TG-AAGTTTG
44316133 GTAAAGTGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.28, C:0.02, G:0.22, T:0.48
Consensus pattern (20 bp):
TGAAGTTTGTTGATAGATTA
Found at i:44320744 original size:25 final size:26
Alignment explanation
Indices: 44320686--44320745 Score: 79
Period size: 28 Copynumber: 2.3 Consensus size: 26
44320676 TAGAGCGTAT
44320686 TTAGA-TAGATTTGTTATTGTGTTTA
1 TTAGACTAGATTTGTTATTGTGTTTA
*
44320711 TTGACGACTAGATTTGTTGTTGTGTTTA
1 TT-A-GACTAGATTTGTTATTGTGTTTA
44320739 TT-GACTA
1 TTAGACTA
44320746 CATTCTAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
25 7 0.23
26 1 0.03
27 2 0.06
28 21 0.68
ACGTcount: A:0.22, C:0.05, G:0.22, T:0.52
Consensus pattern (26 bp):
TTAGACTAGATTTGTTATTGTGTTTA
Found at i:44323011 original size:2 final size:2
Alignment explanation
Indices: 44323004--44323033 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
44322994 GCTCTTGCAC
44323004 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
44323034 GTTTGCACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44323818 original size:40 final size:39
Alignment explanation
Indices: 44323741--44323884 Score: 189
Period size: 40 Copynumber: 3.6 Consensus size: 39
44323731 TACTCGAATG
*
44323741 ATATCCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCT-AGCGACT
* *
44323781 ACATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGCGACT
* * *
44323821 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGCGACT
*
44323861 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-TCCGAAGGC
44323885 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 1 0.01
40 74 0.80
41 17 0.18
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGCGACT
Found at i:44327116 original size:28 final size:28
Alignment explanation
Indices: 44327047--44327147 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
44327037 GACAAAATTG
* * * *
44327047 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
44327077 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
44327105 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
44327134 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
44327148 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:44327141 original size:29 final size:28
Alignment explanation
Indices: 44327076--44327147 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
44327066 AAAATTGTAC
*
44327076 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
44327104 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
44327133 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
44327148 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:44331497 original size:9 final size:9
Alignment explanation
Indices: 44331483--44331514 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
44331473 CAACGTTTTT
44331483 TTGCATTCA
1 TTGCATTCA
44331492 TTGCATTCA
1 TTGCATTCA
44331501 TTGCATTCA
1 TTGCATTCA
44331510 -TGCAT
1 TTGCAT
44331515 CGGCATTGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.22
9 18 0.78
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (9 bp):
TTGCATTCA
Found at i:44339707 original size:43 final size:44
Alignment explanation
Indices: 44339653--44339747 Score: 138
Period size: 43 Copynumber: 2.2 Consensus size: 44
44339643 GCCTCAGCGA
* * *
44339653 AGCAGATTGAAGTCACTAGTCTTATCTCCCTGAAGT-GCAGTGG
1 AGCAGACTGAAGTCACAAGTCTCATCTCCCTGAAGTCGCAGTGG
* *
44339696 AGCAGACTGAAGTTACAAGTCTCATCTCCTTGAAGTCGCAGTGG
1 AGCAGACTGAAGTCACAAGTCTCATCTCCCTGAAGTCGCAGTGG
44339740 AGCAGACT
1 AGCAGACT
44339748 AAATGTACAG
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 31 0.67
44 15 0.33
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (44 bp):
AGCAGACTGAAGTCACAAGTCTCATCTCCCTGAAGTCGCAGTGG
Found at i:44340293 original size:42 final size:40
Alignment explanation
Indices: 44340247--44340376 Score: 145
Period size: 42 Copynumber: 3.1 Consensus size: 40
44340237 GAAATGGCGT
* *
44340247 TGGAACAGCTAAAAGCCATAGCAGATCTCCTTGAAGTTTCAG
1 TGGAA-AGCTAAA-GCTACAGCAGATCTCCTTGAAGTTTCAG
* * * *
44340289 TGGAATTGATCGAAGCTACAGCAGATCTCCTTGAAGTTTCAA
1 TGGAA-AGCT-AAAGCTACAGCAGATCTCCTTGAAGTTTCAG
44340331 TGGATTAAGC-AAAGCTACAGCAGATCTCCTTGAAGTTTCAG
1 TGGA--AAGCTAAAGCTACAGCAGATCTCCTTGAAGTTTCAG
44340372 TGGAA
1 TGGAA
44340377 TTGATTGAAG
Statistics
Matches: 74, Mismatches: 11, Indels: 9
0.79 0.12 0.10
Matches are distributed among these distances:
39 1 0.01
41 33 0.45
42 36 0.49
43 3 0.04
44 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (40 bp):
TGGAAAGCTAAAGCTACAGCAGATCTCCTTGAAGTTTCAG
Found at i:44340358 original size:41 final size:41
Alignment explanation
Indices: 44340266--44340375 Score: 175
Period size: 41 Copynumber: 2.7 Consensus size: 41
44340256 TAAAAGCCAT
* * *
44340266 AGCAGATCTCCTTGAAGTTTCAGTGGAATTGATCGAAGCTAC
1 AGCAGATCTCCTTGAAGTTTCAGTGG-ATTAAGCAAAGCTAC
*
44340308 AGCAGATCTCCTTGAAGTTTCAATGGATTAAGCAAAGCTAC
1 AGCAGATCTCCTTGAAGTTTCAGTGGATTAAGCAAAGCTAC
44340349 AGCAGATCTCCTTGAAGTTTCAGTGGA
1 AGCAGATCTCCTTGAAGTTTCAGTGGA
44340376 ATTGATTGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
41 38 0.60
42 25 0.40
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (41 bp):
AGCAGATCTCCTTGAAGTTTCAGTGGATTAAGCAAAGCTAC
Found at i:44342037 original size:3 final size:3
Alignment explanation
Indices: 44341971--44342023 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
44341961 TATACATTTA
44341971 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
44342019 TAT TA
1 TAT TA
44342024 GTTTTGATAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:44347053 original size:2 final size:2
Alignment explanation
Indices: 44347046--44347083 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
44347036 AACGCCTTAA
44347046 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
44347084 TCCCCCAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:44354545 original size:37 final size:37
Alignment explanation
Indices: 44354503--44354607 Score: 174
Period size: 37 Copynumber: 2.8 Consensus size: 37
44354493 TCAGACAAAT
* *
44354503 CTCCACACGAAGTTATCGGGTCTTACCCGGACAAAAC
1 CTCCACACGTAGTCATCGGGTCTTACCCGGACAAAAC
* *
44354540 CTCCACACGTAGTCATCGGGTCTTACCCGGACATAAT
1 CTCCACACGTAGTCATCGGGTCTTACCCGGACAAAAC
44354577 CTCCACACGTAGTCATCGGGTCTTACCCGGA
1 CTCCACACGTAGTCATCGGGTCTTACCCGGA
44354608 ATATATTTCC
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (37 bp):
CTCCACACGTAGTCATCGGGTCTTACCCGGACAAAAC
Found at i:44354892 original size:50 final size:49
Alignment explanation
Indices: 44354757--44354903 Score: 233
Period size: 50 Copynumber: 3.0 Consensus size: 49
44354747 CATCGTCTAC
* *
44354757 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
44354807 ATATTTCACATTTACCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACA-TTACCATTCGGCTTTACCACATATGCATATCTCATATAT
*
44354857 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATGT-TCATAT
1 ATATTTCACATT-ACCATTCGGCTTTACCACATATGCATATCTCATAT
44354904 TCACCACATT
Statistics
Matches: 92, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
49 8 0.09
50 82 0.89
51 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.38
Consensus pattern (49 bp):
ATATTTCACATTACCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:44354913 original size:45 final size:47
Alignment explanation
Indices: 44354863--44354959 Score: 135
Period size: 47 Copynumber: 2.1 Consensus size: 47
44354853 ATATATATTT
* * *
44354863 CACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCAC
1 CACATTGACCATTCGGCCTTATCACACATATGCATGCTCACATTCAC
* *
44354908 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGACCATTCGGCCTTATCACACATATGCATGCTCACATTCAC
44354955 CACAT
1 CACAT
44354960 AAAATCCTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
45 19 0.42
46 1 0.02
47 25 0.56
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (47 bp):
CACATTGACCATTCGGCCTTATCACACATATGCATGCTCACATTCAC
Found at i:44354953 original size:47 final size:45
Alignment explanation
Indices: 44354813--44354959 Score: 132
Period size: 50 Copynumber: 3.1 Consensus size: 45
44354803 ATATATATTT
* * * * * *
44354813 CACATTTACCATTCGGCTTTACCACATATGCATATCTCATATATATATTT
1 CACATTGACCATTCGGCCTTACCACATATGCAT-GCTCACAT-T-CA--C
* * *
44354863 CACATTGACCATTCGGCTTTACCACATATGCATGTTCATATTCAC
1 CACATTGACCATTCGGCCTTACCACATATGCATGCTCACATTCAC
* *
44354908 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTGACCATTCGGCCTTA-C-CACATATGCATGCTCACATTCAC
44354955 CACAT
1 CACAT
44354960 AAAATCCTAA
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
45 19 0.22
46 1 0.01
47 26 0.31
48 1 0.01
49 6 0.07
50 32 0.38
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (45 bp):
CACATTGACCATTCGGCCTTACCACATATGCATGCTCACATTCAC
Found at i:44359159 original size:40 final size:40
Alignment explanation
Indices: 44359127--44359472 Score: 569
Period size: 40 Copynumber: 8.8 Consensus size: 40
44359117 CCAGCATGAT
* * *
44359127 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
44359167 TGCTCTTC-GG-TTTAGCACGG--ATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
44359203 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
44359242 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
44359282 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44359322 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
44359362 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44359401 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44359441 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
44359473 CTCAATTCTC
Statistics
Matches: 290, Mismatches: 11, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
36 24 0.08
37 8 0.03
38 7 0.02
39 63 0.22
40 188 0.65
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:44359385 original size:119 final size:119
Alignment explanation
Indices: 44359127--44359472 Score: 576
Period size: 119 Copynumber: 2.9 Consensus size: 119
44359117 CCAGCATGAT
* * * * * *
44359127 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTC-GG-TTTAGCACGGAT-
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
44359189 ATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
66 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44359242 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
44359307 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
66 -ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
44359362 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
44359426 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
66 -ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
44359473 CTCAATTCTC
Statistics
Matches: 218, Mismatches: 8, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
115 44 0.20
116 2 0.01
117 10 0.05
119 124 0.57
120 38 0.17
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (119 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:44359388 original size:159 final size:155
Alignment explanation
Indices: 44359127--44359472 Score: 593
Period size: 159 Copynumber: 2.2 Consensus size: 155
44359117 CCAGCATGAT
* * * *
44359127 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGTTTAGCACGGATATC
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGCTTAGCACGGATATC
44359192 ACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
66 ACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
44359257 AGCCCGGATACATCACTAGCACGAA
131 AGCCCGGATACATCACTAGCACGAA
* *
44359282 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC-GG-CTTAGCACGG--A
44359347 TATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGG
62 TATCACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGG
*
44359412 ACTTAGCCCGGATATATCACTAGCACGAA
127 ACTTAGCCCGGATACATCACTAGCACGAA
44359441 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
44359473 CTCAATTCTC
Statistics
Matches: 179, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
155 44 0.25
156 2 0.01
157 8 0.04
159 125 0.70
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (155 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGCTTAGCACGGATATC
ACTAGCACGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTT
AGCCCGGATACATCACTAGCACGAA
Found at i:44360799 original size:37 final size:37
Alignment explanation
Indices: 44360740--44360848 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
44360730 AGCTCAGACG
* *
44360740 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
44360777 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
44360814 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
44360849 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:44361052 original size:50 final size:50
Alignment explanation
Indices: 44360998--44361130 Score: 191
Period size: 48 Copynumber: 2.7 Consensus size: 50
44360988 CATCGCCTAC
44360998 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
44361048 ATA-TTCACATTA-CCATTCGGCTTTACCACATATGCATATCTCATATAT
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* **
44361096 ACATTATTTCAC-AGCCATTCGGCTTTACCACATAT
1 ATATT-TCACACTAGCCATTCGGCTTTACCACATAT
44361131 GCATGTTCAT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
48 37 0.50
49 10 0.14
50 27 0.36
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (50 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:44361150 original size:50 final size:49
Alignment explanation
Indices: 44361010--44361150 Score: 148
Period size: 50 Copynumber: 2.8 Consensus size: 49
44361000 ATTTCACACT
* * *
44361010 AGCCATTCGGCTTTACCACATATACATATC--TCATATA-TATATTCAC
1 AGCCATTCGGCTTTACCACATATGCATTTCATTCATACATTATATTCAC
*
44361056 ATTACCATTCGGCTTTACCACATATGCATATCTCATAT-ATACATTAT-TTCAC
1 A--GCCATTCGGCTTTACCACATATGCAT-T-TCAT-TCATACATTATATTCAC
44361108 AGCCATTCGGCTTTACCACATATGCATGTTCATTCATCACATT
1 AGCCATTCGGCTTTACCACATATGCAT-TTCATTCAT-ACATT
44361151 GGCCATTCGG
Statistics
Matches: 79, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
46 1 0.01
48 25 0.32
49 6 0.08
50 33 0.42
52 10 0.13
53 4 0.05
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.36
Consensus pattern (49 bp):
AGCCATTCGGCTTTACCACATATGCATTTCATTCATACATTATATTCAC
Found at i:44361156 original size:43 final size:47
Alignment explanation
Indices: 44361109--44361197 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 47
44361099 TTATTTCACA
*
44361109 GCCATTCGGCTTTA-C-CACA-TATGCATGTT-CATTCATCACATTG
1 GCCATTCGGCCTTATCACACATTATGCATGTTACATTCATCACATTG
44361152 GCCATTCGGCCTTATCACACATTATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATTATGCATGTT-ACATTCATCACAT
44361198 AAAATCCTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
43 13 0.32
44 1 0.03
45 4 0.10
46 10 0.25
48 12 0.30
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACACATTATGCATGTTACATTCATCACATTG
Found at i:44364505 original size:40 final size:40
Alignment explanation
Indices: 44364450--44364619 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
44364440 AGGCATTGAA
44364450 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
44364490 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
44364530 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
44364569 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
44364610 CTATATCCGG
1 ATATATCCGG
44364620 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:44372597 original size:40 final size:40
Alignment explanation
Indices: 44372542--44372711 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
44372532 AACATTGGAA
44372542 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
44372582 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
44372622 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
44372661 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
44372702 CTATATCCGG
1 ATATATCCGG
44372712 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:44384010 original size:44 final size:42
Alignment explanation
Indices: 44383910--44384024 Score: 117
Period size: 44 Copynumber: 2.7 Consensus size: 42
44383900 ATCAAATATT
* * *
44383910 GATGCC-ACTGTCCCAAATAGGGTCTTACACGAAATCTTATAC
1 GATGCCAAC-GTCCCAAACATGGTCTTACACGAAATCTAATAC
* **
44383952 AATGCCAATATCCCAAACATGGTCTTACACGTAAATCTCAAGT-C
1 GATGCCAACGTCCCAAACATGGTCTTACACG-AAATCT-AA-TAC
*
44383996 GATGCCAACGTCCCAGACATGGTCTTACA
1 GATGCCAACGTCCCAAACATGGTCTTACA
44384025 AGATAACACA
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
42 24 0.41
43 7 0.12
44 27 0.46
45 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (42 bp):
GATGCCAACGTCCCAAACATGGTCTTACACGAAATCTAATAC
Found at i:44387232 original size:32 final size:31
Alignment explanation
Indices: 44387190--44387274 Score: 82
Period size: 32 Copynumber: 2.7 Consensus size: 31
44387180 ATACGACTTT
* *
44387190 AAGCCTTCAGTAGCGGTATTATAA-TTGGCACA
1 AAGCCATCAGTAACGGTA--ATAAGTTGGCACA
*
44387222 AAGCCATCAGTAACTGTAATAAGTTTGGCACA
1 AAGCCATCAGTAACGGTAATAAG-TTGGCACA
* * *
44387254 TAGCCATCAGCAACGATAATA
1 AAGCCATCAGTAACGGTAATA
44387275 TAATCGGCAC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
30 4 0.09
32 40 0.91
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (31 bp):
AAGCCATCAGTAACGGTAATAAGTTGGCACA
Found at i:44387284 original size:32 final size:32
Alignment explanation
Indices: 44387209--44387285 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
44387199 GTAGCGGTAT
*
44387209 TATAATTGGCACAAAGCCATCAGTAACTGTAA
1 TATAATTGGCACAAAGCCATCAGCAACTGTAA
* *
44387241 TA-AGTTTGGCACATAGCCATCAGCAAC-GATAA
1 TATA-ATTGGCACAAAGCCATCAGCAACTG-TAA
*
44387273 TATAATCGGCACA
1 TATAATTGGCACA
44387286 CAACCATAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
31 2 0.05
32 34 0.92
33 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (32 bp):
TATAATTGGCACAAAGCCATCAGCAACTGTAA
Found at i:44387409 original size:22 final size:22
Alignment explanation
Indices: 44387384--44387440 Score: 114
Period size: 22 Copynumber: 2.6 Consensus size: 22
44387374 AATCAATATA
44387384 GCACAGAGCCATATTTAGGTTG
1 GCACAGAGCCATATTTAGGTTG
44387406 GCACAGAGCCATATTTAGGTTG
1 GCACAGAGCCATATTTAGGTTG
44387428 GCACAGAGCCATA
1 GCACAGAGCCATA
44387441 ATTTGATTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (22 bp):
GCACAGAGCCATATTTAGGTTG
Found at i:44387825 original size:27 final size:27
Alignment explanation
Indices: 44387795--44387856 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
44387785 CAAAATAGTC
*
44387795 ATTTTACCCTACAACG-GTATTTCGATA
1 ATTTTACACTACAA-GAGTATTTCGATA
*
44387822 ATTTTACACTACAAGAGTATTTCGGTA
1 ATTTTACACTACAAGAGTATTTCGATA
44387849 ATTTTACA
1 ATTTTACA
44387857 AATTGAGGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAGAGTATTTCGATA
Found at i:44387868 original size:27 final size:27
Alignment explanation
Indices: 44387846--44388045 Score: 230
Period size: 27 Copynumber: 7.5 Consensus size: 27
44387836 GAGTATTTCG
44387846 GTAATTTTACAAATTGAGGGTATTTTA
1 GTAATTTTACAAATTGAGGGTATTTTA
* *
44387873 GTAATTTTATAAATTTG-GGGTATTTCA
1 GTAATTTTACAAA-TTGAGGGTATTTTA
* * *
44387900 ATAATTTTACAAATTGGGGGTATTTTG
1 GTAATTTTACAAATTGAGGGTATTTTA
* *
44387927 GTAATTTTACAAA-TCAGGGGTA-TTTG
1 GTAATTTTACAAATTGA-GGGTATTTTA
44387953 GATAATTTTACAAATTGAGGGTATTTTA
1 G-TAATTTTACAAATTGAGGGTATTTTA
* *
44387981 GTAATTTTACAAA-TCAGGGTATTTTG
1 GTAATTTTACAAATTGAGGGTATTTTA
* * *
44388007 GTAATTTTATAAATTAAGGGTATTTCA
1 GTAATTTTACAAATTGAGGGTATTTTA
44388034 GT-ATTTTACAAA
1 GTAATTTTACAAA
44388046 CTGGGGTCTT
Statistics
Matches: 148, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
26 41 0.28
27 98 0.66
28 9 0.06
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.43
Consensus pattern (27 bp):
GTAATTTTACAAATTGAGGGTATTTTA
Found at i:44387868 original size:54 final size:54
Alignment explanation
Indices: 44387810--44388045 Score: 250
Period size: 54 Copynumber: 4.4 Consensus size: 54
44387800 ACCCTACAAC
* *
44387810 GGTATTTCGA-TAATTTTAC-ACTACAAGAGTATTTCGGTAATTTTACAAATTGAG
1 GGTATTT-GAGTAATTTTACAAAT-CAAGGGTATTTCGGTAATTTTACAAATTGAG
* * *** ** *
44387864 GGTATTTTAGTAATTTTATAAATTTGGGGTATTTCAATAATTTTACAAATTGGG
1 GGTATTTGAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATTGAG
*
44387918 GGTATTTTG-GTAATTTTACAAATCAGGGGTATTT-GGATAATTTTACAAATTGAG
1 GGTA-TTTGAGTAATTTTACAAATCAAGGGTATTTCGG-TAATTTTACAAATTGAG
* * * *
44387972 GGTATTTTAGTAATTTTACAAATC-AGGGTATTTTGGTAATTTTATAAATTAAG
1 GGTATTTGAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATTGAG
*
44388025 GGTATTTCAGT-ATTTTACAAA
1 GGTATTTGAGTAATTTTACAAA
44388046 CTGGGGTCTT
Statistics
Matches: 154, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
52 10 0.06
53 37 0.24
54 102 0.66
55 5 0.03
ACGTcount: A:0.33, C:0.06, G:0.18, T:0.43
Consensus pattern (54 bp):
GGTATTTGAGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATTGAG
Found at i:44387930 original size:81 final size:80
Alignment explanation
Indices: 44387810--44388045 Score: 264
Period size: 81 Copynumber: 2.9 Consensus size: 80
44387800 ACCCTACAAC
* * * * *
44387810 GGTATTTCGATAATTTTAC-ACTACAAGAGTATTTCGGTAATTTTACAAATTGAGGGTATTTTAG
1 GGTATTTCAATAATTTTACAAAT-C-AGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAG
*
44387874 TAATTTTATAAATTTG-G
64 TAATTTTACAAA-TTGAG
** * * *
44387891 GGTATTTCAATAATTTTACAAATTGGGGGTATTTTGGTAATTTTACAAATCAGGGGTA-TTTGGA
1 GGTATTTCAATAATTTTACAAA-TCAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAG-
44387955 TAATTTTACAAATTGAG
64 TAATTTTACAAATTGAG
* * * *
44387972 GGTATTTTAGTAATTTTACAAATCAGGGTATTTTGGTAATTTTATAAATTAAGGGTATTTCAGT-
1 GGTATTTCAATAATTTTACAAATCAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAGTA
44388036 ATTTTACAAA
66 ATTTTACAAA
44388046 CTGGGGTCTT
Statistics
Matches: 130, Mismatches: 20, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
79 10 0.08
80 38 0.29
81 80 0.62
82 1 0.01
83 1 0.01
ACGTcount: A:0.33, C:0.06, G:0.18, T:0.43
Consensus pattern (80 bp):
GGTATTTCAATAATTTTACAAATCAGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTTAGTA
ATTTTACAAATTGAG
Found at i:44395977 original size:14 final size:14
Alignment explanation
Indices: 44395958--44395987 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
44395948 CAAAAACACA
44395958 TTCTTTTCTTTTCT
1 TTCTTTTCTTTTCT
*
44395972 TTCTTTTTTTTTCT
1 TTCTTTTCTTTTCT
44395986 TT
1 TT
44395988 TTTGGGTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTCTTTTCTTTTCT
Found at i:44399216 original size:25 final size:26
Alignment explanation
Indices: 44399181--44399231 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
44399171 ATTGTAGAAT
44399181 AATTAAATTATTTGTTTCACTAATGA
1 AATTAAATTATTTGTTTCACTAATGA
44399207 AATT-AATTATTTGTTTCACTAATGA
1 AATTAAATTATTTGTTTCACTAATGA
44399232 TATTTTAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.37, C:0.08, G:0.08, T:0.47
Consensus pattern (26 bp):
AATTAAATTATTTGTTTCACTAATGA
Found at i:44400053 original size:36 final size:36
Alignment explanation
Indices: 44400006--44400084 Score: 113
Period size: 36 Copynumber: 2.2 Consensus size: 36
44399996 ATTCCAACTA
*
44400006 AAACACACTAGATGCTCATAAGAGCTAATCCATCTG
1 AAACACACTAGATGCTCATAAGAGCCAATCCATCTG
* * *
44400042 AAACACACTAGATGCTCATACGAGCCAGTCCATTTG
1 AAACACACTAGATGCTCATAAGAGCCAATCCATCTG
44400078 ATAACAC
1 A-AACAC
44400085 CCAATAGCTC
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
36 33 0.87
37 5 0.13
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.22
Consensus pattern (36 bp):
AAACACACTAGATGCTCATAAGAGCCAATCCATCTG
Found at i:44401856 original size:38 final size:38
Alignment explanation
Indices: 44401774--44401856 Score: 105
Period size: 38 Copynumber: 2.2 Consensus size: 38
44401764 GCATCTGGTG
44401774 TGTTATCAAATAGAATAACTCTTATGAGAAAACTGACA
1 TGTTATCAAATAGAATAACTCTTATGAGAAAACTGACA
* * * * *
44401812 TATTATCAGATGGAATAGCTCTTATGAGAAATCT-AGCA
1 TGTTATCAAATAGAATAACTCTTATGAGAAAACTGA-CA
44401850 TGTTATC
1 TGTTATC
44401857 GATTGGTTAC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
37 1 0.03
38 37 0.97
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.33
Consensus pattern (38 bp):
TGTTATCAAATAGAATAACTCTTATGAGAAAACTGACA
Found at i:44407508 original size:15 final size:16
Alignment explanation
Indices: 44407488--44407525 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
44407478 TAATTTGGTT
*
44407488 AATAAACAAAA-ATTA
1 AATAAACAAAAGATGA
44407503 AATAAA-AAAAGATGA
1 AATAAACAAAAGATGA
44407518 AATAAACA
1 AATAAACA
44407526 TCATCTTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 4 0.20
15 15 0.75
16 1 0.05
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (16 bp):
AATAAACAAAAGATGA
Found at i:44408543 original size:25 final size:25
Alignment explanation
Indices: 44408497--44408566 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
44408487 GCGGATTCTC
* *
44408497 CATAGCTCATGTGACCAATTACAGT
1 CATAGCTCATGTGAACATTTACAGT
* * *
44408522 TATAGCTCGTGTGAACATTTACCGT
1 CATAGCTCATGTGAACATTTACAGT
* *
44408547 CAGAGCTCATGTGAGCATTT
1 CATAGCTCATGTGAACATTT
44408567 TCCTACATAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.31
Consensus pattern (25 bp):
CATAGCTCATGTGAACATTTACAGT
Found at i:44410915 original size:23 final size:23
Alignment explanation
Indices: 44410872--44410915 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
44410862 AAAGGGTTTG
*
44410872 TATTATTTTAGTAAATTTTTTCA
1 TATTATTTTAGTAAATATTTTCA
*
44410895 TATTA-TTTGGTAAATAATTTT
1 TATTATTTTAGTAAAT-ATTTT
44410916 TTTTTTCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (23 bp):
TATTATTTTAGTAAATATTTTCA
Found at i:44416369 original size:20 final size:20
Alignment explanation
Indices: 44416326--44416370 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
44416316 TCATCTTTTG
* *
44416326 ATAAAAATACATAAGATTTA
1 ATAAAAATACATAAAAATTA
44416346 ATAAAAATACATACAAAATT-
1 ATAAAAATACATA-AAAATTA
44416366 ATAAA
1 ATAAA
44416371 TAAATGAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.27
Consensus pattern (20 bp):
ATAAAAATACATAAAAATTA
Found at i:44417542 original size:19 final size:19
Alignment explanation
Indices: 44417495--44417531 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
44417485 TTCTAACAAG
*
44417495 AATACCCAAATTTGTAACT
1 AATACCAAAATTTGTAACT
44417514 AATACCAAAATTTGTAAC
1 AATACCAAAATTTGTAAC
44417532 GTGATACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.19, G:0.05, T:0.30
Consensus pattern (19 bp):
AATACCAAAATTTGTAACT
Found at i:44417543 original size:20 final size:19
Alignment explanation
Indices: 44417502--44417543 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
44417492 AAGAATACCC
*
44417502 AAATTTGTAACTAATACCA
1 AAATTTGTAACTAATACAA
*
44417521 AAATTTGTAACGTGATACAA
1 AAATTTGTAAC-TAATACAA
44417541 AAA
1 AAA
44417544 ACTCTACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.29
Consensus pattern (19 bp):
AAATTTGTAACTAATACAA
Found at i:44417610 original size:18 final size:19
Alignment explanation
Indices: 44417589--44417628 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
44417579 CAAAAATTGT
44417589 TAAT-GATAACAAAATTTC
1 TAATCGATAACAAAATTTC
* *
44417607 TAATCGATTACAATATTTC
1 TAATCGATAACAAAATTTC
44417626 TAA
1 TAA
44417629 CGTGATAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (19 bp):
TAATCGATAACAAAATTTC
Found at i:44417955 original size:13 final size:13
Alignment explanation
Indices: 44417937--44417980 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
44417927 CAAAAATATT
44417937 ATTTTATTTTAAA
1 ATTTTATTTTAAA
*
44417950 ATTTTAAATTCTAAA
1 ATTTT--ATTTTAAA
*
44417965 ATTTTTTTTTAAA
1 ATTTTATTTTAAA
44417978 ATT
1 ATT
44417981 AAAAAGATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 14 0.54
15 12 0.46
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTTTATTTTAAA
Found at i:44419099 original size:28 final size:28
Alignment explanation
Indices: 44419045--44419100 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
44419035 ACAGGGGTTT
44419045 TCACACGGCCTGACACACACCCATGTCCC
1 TCACACGGCCTGA-ACACACCCATGTCCC
*
44419074 TCACACGGCCATG-ACACACCCGTGTCC
1 TCACACGGCC-TGAACACACCCATGTCC
44419101 TATCTCGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 13 0.52
29 10 0.40
30 2 0.08
ACGTcount: A:0.23, C:0.46, G:0.16, T:0.14
Consensus pattern (28 bp):
TCACACGGCCTGAACACACCCATGTCCC
Found at i:44420262 original size:46 final size:47
Alignment explanation
Indices: 44420080--44420395 Score: 271
Period size: 46 Copynumber: 6.7 Consensus size: 47
44420070 TTCATCAAGT
**
44420080 CGATGCCATGTCCCAGACATAGTCTTACACCGGCTCTCACATATCTGT-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-ACATATC-GTAGC
* * * *
44420130 CGATGCCATGTTCCAGACATGGTCTTACAC-AG-ACAACTTTATACGT-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTAC-ATAT-CGTAGC
* *
44420178 CGATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCGTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTACATATCGTAGC
* *
44420224 CGATGCATGTCCCAGACATATCTTACACTAGCT-TACATCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTACATATCGTA-GC
* * *
44420270 CGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTC-AATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTACATATCGTA-GC
*
44420316 CGATGCTATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGC
1 CGATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCTACAT-ATCGTAGC
*
44420364 CGATGCATGTCCCAAACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
44420396 ACACAAATAA
Statistics
Matches: 233, Mismatches: 19, Indels: 32
0.82 0.07 0.11
Matches are distributed among these distances:
44 9 0.04
45 19 0.08
46 78 0.33
47 30 0.13
48 66 0.28
49 3 0.01
50 28 0.12
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTACATATCGTAGC
Found at i:44420365 original size:94 final size:95
Alignment explanation
Indices: 44420028--44420395 Score: 309
Period size: 94 Copynumber: 3.9 Consensus size: 95
44420018 CATAGGGTAT
* * *
44420028 AATGCCAATGCCATGTCCCAAACATGGTCTTACACTGGCTCATTCATCAA-GT--CGATGCCATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC--TCAT-AATGTGCCGATGCCATG
** *
44420090 TCCCAGACATAGTCTTACACCGGCTCTCACATATC
63 TCCCAGACATAGTCTTACACTAGCTCT--CATCTC
** * * * *
44420125 TGTGCCGATGCCATGTTCCAGACATGGTCTTACAC-AGACAACT-TTATACGTGCCGATGCCATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-C-TCTCATA-ATGTGCCGATGCCATG
* * *
44420188 TCCCAGACATGGTCTTACACT-G-ACACATCTC
63 TCCCAGACATAGTCTTACACTAGCTCTCATCTC
* * * *
44420219 -GTAGCCGATG-CATGTCCCAGACAT-ATCTTACACTAGCT-TACAT-CTCGAGGCCGATG-CAT
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-G-TGCCGATGCCAT
*
44420278 GTCCCAGACAT-GTCTTACACTAGCTCTCGTCTC
62 GTCCCAGACATAGTCTTACACTAGCTCTCATCTC
*
44420311 AATGCCGATGCTATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATG-CATGTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGT-GCCGATGCCATGTC
*
44420375 CCAAACAT-GTCTTACACTAGC
65 CCAGACATAGTCTTACACTAGC
44420396 ACACAAATAA
Statistics
Matches: 222, Mismatches: 29, Indels: 43
0.76 0.10 0.15
Matches are distributed among these distances:
90 11 0.05
91 16 0.07
92 30 0.14
93 31 0.14
94 63 0.28
95 4 0.02
96 5 0.02
97 32 0.14
98 30 0.14
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (95 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGCCGATGCCATGTCC
CAGACATAGTCTTACACTAGCTCTCATCTC
Found at i:44424412 original size:27 final size:27
Alignment explanation
Indices: 44424371--44424433 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 27
44424361 TTAATTTCTT
*
44424371 TTATTTACTT-TATTTTAACTATTA-TA
1 TTATTTA-TTATATTTTAACAATTATTA
44424397 TTATTATATTATATTTTAACAATTATTA
1 TTATT-TATTATATTTTAACAATTATTA
44424425 TTATTTATT
1 TTATTTATT
44424434 TAAATAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
26 7 0.21
27 19 0.58
28 7 0.21
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (27 bp):
TTATTTATTATATTTTAACAATTATTA
Found at i:44424803 original size:32 final size:32
Alignment explanation
Indices: 44424757--44424822 Score: 116
Period size: 32 Copynumber: 2.1 Consensus size: 32
44424747 CGATTCCCAT
44424757 TATATCTTCTGGTTCCCATGTTGCTTCTTCAA
1 TATATCTTCTGGTTCCCATGTTGCTTCTTCAA
44424789 TATATCTT-TCGGTTCCCATGTTGCTTCTTCAA
1 TATATCTTCT-GGTTCCCATGTTGCTTCTTCAA
44424821 TA
1 TA
44424823 CTGTGACTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 1 0.03
32 32 0.97
ACGTcount: A:0.17, C:0.24, G:0.12, T:0.47
Consensus pattern (32 bp):
TATATCTTCTGGTTCCCATGTTGCTTCTTCAA
Found at i:44429191 original size:46 final size:45
Alignment explanation
Indices: 44429141--44429361 Score: 166
Period size: 46 Copynumber: 4.7 Consensus size: 45
44429131 ATTCGTGTGT
44429141 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGTC-ACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CGACA-TATGA
* *
44429187 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-A-TTGA-GA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCGACAT-ATGA
* * * *
44429232 CGAGGACTAGTGTAAGACATGTCTGGGACGTGCATCGGCCTCGAGACAT-A
1 -GA-G-CCAGTGTAAGACATGTCTGGGACATGCATCGG---CGACATATGA
* * *
44429282 -AGCCAGTGTAAGACATGTCTGGAACATGCATCGGCTACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGAC-ATATGA
* * *
44429327 TAGTCAGTGTAAGACCATGTCTGAGACATGGCATC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
44429362 AACTTGAGAT
Statistics
Matches: 142, Mismatches: 16, Indels: 32
0.75 0.08 0.17
Matches are distributed among these distances:
43 2 0.01
44 3 0.02
45 4 0.03
46 64 0.45
47 43 0.30
48 22 0.15
49 1 0.01
50 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGACATATGA
Found at i:44429371 original size:47 final size:47
Alignment explanation
Indices: 44429145--44429408 Score: 160
Period size: 47 Copynumber: 5.7 Consensus size: 47
44429135 GTGTGTGAGC
* * * *
44429145 CAGTGTAAGA-CATGTCTGGGACAT-GCATC-GGTC-ACATTATGAGAG
1 CAGTGTAAGACCATGTCTGAGACATGGCATCAGCTCGAGATGAT-A-AG
* * * **
44429190 CCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGGA-
1 -CAGTGTAAGACCATGTCTGAGACATGGCATCAGC-TCGAGATGATAAG
* * * *
44429238 CTAGTGTAAGA-CATGTCTGGGACGT-GCATCGGCCTCGAGA-CATAAG
1 C-AGTGTAAGACCATGTCTGAGACATGGCATCAG-CTCGAGATGATAAG
*
44429284 CCAGTGTAAGA-CATGTCTG-GAACAT-GCATCGGCTACGAGATGAT-AG
1 -CAGTGTAAGACCATGTCTGAG-ACATGGCATCAGCT-CGAGATGATAAG
* * *
44429330 TCAGTGTAAGACCATGTCTGAGACATGGCATCAACTTGAGAT-ATGAG
1 -CAGTGTAAGACCATGTCTGAGACATGGCATCAGCTCGAGATGATAAG
*
44429377 CTAGTGTAAGACCGTGTCT-AGGACATGGCATC
1 C-AGTGTAAGACCATGTCTGA-GACATGGCATC
44429409 GGCACCTTAC
Statistics
Matches: 180, Mismatches: 20, Indels: 35
0.77 0.09 0.15
Matches are distributed among these distances:
45 5 0.03
46 69 0.38
47 78 0.43
48 22 0.12
49 2 0.01
50 1 0.01
51 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGAGACATGGCATCAGCTCGAGATGATAAG
Found at i:44429395 original size:140 final size:141
Alignment explanation
Indices: 44429142--44429411 Score: 370
Period size: 140 Copynumber: 1.9 Consensus size: 141
44429132 TTCGTGTGTG
* *
44429142 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGTCACATTATGAGAGCCAGTGTAAGACCATGT
1 AGCCAGTGTAAGACATGTCTGGAACATGCATCGGTCACATGATGAGAGCCAGTGTAAGACCATGT
* * * *
44429207 CTGGGACATGGCATCAGCATTGAGACGAGGACTAGTGTAAGACATGTCTGGGACGT-GCATCGGC
66 CTGAGACATGGCATCAACATTGAGACGAGGACTAGTGTAAGACATGTCTAGGACATGGCATCGGC
44429271 CTCGAGACATA
131 CTCGAGACATA
* *
44429282 AGCCAGTGTAAGACATGTCTGGAACATGCATCGG-CTACGA-GATGATAGTCAGTGTAAGACCAT
1 AGCCAGTGTAAGACATGTCTGGAACATGCATCGGTC-AC-ATGATGAGAGCCAGTGTAAGACCAT
* * *
44429345 GTCTGAGACATGGCATCAAC-TTGAGA-TATGAGCTAGTGTAAGACCGTGTCTAGGACATGGCAT
64 GTCTGAGACATGGCATCAACATTGAGACGAGGA-CTAGTGTAAGA-CATGTCTAGGACATGGCAT
44429408 CGGC
127 CGGC
44429412 ACCTTACCTT
Statistics
Matches: 114, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
138 3 0.03
139 18 0.16
140 84 0.74
141 9 0.08
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (141 bp):
AGCCAGTGTAAGACATGTCTGGAACATGCATCGGTCACATGATGAGAGCCAGTGTAAGACCATGT
CTGAGACATGGCATCAACATTGAGACGAGGACTAGTGTAAGACATGTCTAGGACATGGCATCGGC
CTCGAGACATA
Found at i:44432119 original size:49 final size:51
Alignment explanation
Indices: 44432061--44432190 Score: 176
Period size: 51 Copynumber: 2.6 Consensus size: 51
44432051 ATCTGCTACG
*
44432061 CATAGTAGCCTGCGCTTAGTACTACACATGTGAAC-AA-TTATTC-GGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGAACGAAGTTA-TCGGGTACA
* * *
44432110 CGTAGTAGCCTGCACTTAGTACTACACATGTGACCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGAACGAAGTTATCGGGTACA
* *
44432161 CATGGTAGCTTGCACTTAGTACTACACATG
1 CATAGTAGCCTGCACTTAGTACTACACATG
44432191 CAACCTCACA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
49 32 0.45
50 4 0.06
51 35 0.49
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGAACGAAGTTATCGGGTACA
Found at i:44432179 original size:51 final size:49
Alignment explanation
Indices: 44432043--44432190 Score: 181
Period size: 49 Copynumber: 2.9 Consensus size: 49
44432033 ACACTTGTAG
* *
44432043 ACAAGGTTATCTGCTACGCATAGTAGCCTGCGCTTAGTACTACACATGTGA
1 ACAA-GTTATC-GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA
* *
44432094 ACAA-TTATTCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGA
1 ACAAGTTA-TCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA
* * *
44432143 CCGAAGTTATCGGGTACGCATGGTAGCTTGCACTTAGTACTACACATG
1 AC-AAGTTATC-GGTACGCATAGTAGCCTGCACTTAGTACTACACATG
44432191 CAACCTCACA
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
49 39 0.46
50 6 0.07
51 39 0.46
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (49 bp):
ACAAGTTATCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGA
Found at i:44432472 original size:27 final size:27
Alignment explanation
Indices: 44432442--44432495 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
44432432 TCATACAACC
*
44432442 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAATAATAATTTAACATTCAATT
**
44432469 CATGTAATAATAATTTGCCATTCAATT
1 CATGTAATAATAATTTAACATTCAATT
44432496 TCACATGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAATAATAATTTAACATTCAATT
Found at i:44435999 original size:30 final size:29
Alignment explanation
Indices: 44435953--44436011 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
44435943 ATTCCGAGCC
*
44435953 TAGGGGAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAATGTAATTATGCAAAAGTT
* *
44435982 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAATGTAATTATGCAAAAGTT
44436012 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (29 bp):
TAGGGGAAAAATGTAATTATGCAAAAGTT
Found at i:44443512 original size:30 final size:30
Alignment explanation
Indices: 44443476--44443535 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
44443466 TTCCCGAGCC
*
44443476 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
44443506 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
44443536 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:44446782 original size:18 final size:18
Alignment explanation
Indices: 44446759--44446795 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
44446749 CATAACCAAA
44446759 ATATGCATACTCCATTCT
1 ATATGCATACTCCATTCT
*
44446777 ATATGCGTACTCCATTCT
1 ATATGCATACTCCATTCT
44446795 A
1 A
44446796 ACTTTAGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (18 bp):
ATATGCATACTCCATTCT
Found at i:44448228 original size:12 final size:12
Alignment explanation
Indices: 44448188--44448221 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
44448178 CAAAACCCTA
*
44448188 TTTTTCCTT-TC
1 TTTTTCTTTCTC
44448199 TTTTTCTTTCTC
1 TTTTTCTTTCTC
44448211 TTTTTCTTTCT
1 TTTTTCTTTCT
44448222 TTCTTTCCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 8 0.38
12 13 0.62
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTCTTTCTC
Found at i:44448309 original size:27 final size:25
Alignment explanation
Indices: 44448279--44448340 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 25
44448269 TTAATTTCTT
*
44448279 TTATTTACTTTTTTAACTATTATATTA
1 TTATTTACTTTTTTAAC-AAT-TATTA
*
44448306 TTATATTA-TATTTTAACAATTATTA
1 TTAT-TTACTTTTTTAACAATTATTA
44448331 TTATTTACTT
1 TTATTTACTT
44448341 AAATAATAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
24 3 0.10
25 10 0.33
26 2 0.07
27 12 0.40
28 3 0.10
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (25 bp):
TTATTTACTTTTTTAACAATTATTA
Done.