Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 147 of 425
Found at i:44700324 original size:43 final size:42
Alignment explanation
Indices: 44700235--44700341 Score: 115
Period size: 43 Copynumber: 2.5 Consensus size: 42
44700225 AGTTTACATG
* **** *
44700235 TAAGACCATATCTGGGATATGGCATCGATATGAGATTTTGTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGAGATCCCATA
* *
44700277 TAAGACCATAGCTGGGCTATTGGCATCGATTTGAGATCCCATA
1 TAAGACCATAGCTGGGATA-TGGCATCGATATGAGATCCCATA
**
44700320 TAAGACCATATTTGGGATATGG
1 TAAGACCATAGCTGGGATATGG
44700342 TATTGGTATG
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 20 0.38
43 33 0.62
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (42 bp):
TAAGACCATAGCTGGGATATGGCATCGATATGAGATCCCATA
Found at i:44707589 original size:43 final size:42
Alignment explanation
Indices: 44707496--44707594 Score: 126
Period size: 43 Copynumber: 2.3 Consensus size: 42
44707486 TTTGAGTTTA
* * **
44707496 CATGTAAGACCATATCTGGGGTATGGCATCGATATGAGATTT
1 CATGTAAGACCATAGCTGGGCTATGGCATCGATATGAGATCC
* * *
44707538 CGTTTAAGACCATAGCTGGGCTATTGGCATCGATTTGAGATCC
1 CATGTAAGACCATAGCTGGGCTA-TGGCATCGATATGAGATCC
44707581 CATGTAAGACCATA
1 CATGTAAGACCATA
44707595 TCCGGGATGG
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 19 0.40
43 28 0.60
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (42 bp):
CATGTAAGACCATAGCTGGGCTATGGCATCGATATGAGATCC
Found at i:44707707 original size:20 final size:20
Alignment explanation
Indices: 44707682--44707724 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
44707672 CCATGTTAAA
**
44707682 GTTATGAAAGATTATGGTAT
1 GTTATGAAAGACAATGGTAT
*
44707702 GTTATGGAAGACAATGGTAT
1 GTTATGAAAGACAATGGTAT
44707722 GTT
1 GTT
44707725 GCAAGTTGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.02, G:0.28, T:0.37
Consensus pattern (20 bp):
GTTATGAAAGACAATGGTAT
Found at i:44710534 original size:17 final size:18
Alignment explanation
Indices: 44710504--44710537 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
44710494 TGGTCTGCCC
*
44710504 GTGTGGGCCTACACGCCT
1 GTGTGGGCCCACACGCCT
44710522 GTGT-GGCCCACACGCC
1 GTGTGGGCCCACACGCC
44710538 CAGATTGGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.12, C:0.38, G:0.32, T:0.18
Consensus pattern (18 bp):
GTGTGGGCCCACACGCCT
Found at i:44731285 original size:26 final size:26
Alignment explanation
Indices: 44731215--44731286 Score: 63
Period size: 26 Copynumber: 2.8 Consensus size: 26
44731205 AACTGATATC
* * * * *
44731215 GGCAGCTTTGCTGTGTTACTGTTATT
1 GGCAGCTTTGCTGAGATATTATTACT
* * *
44731241 GGCAGCTCTACTGAAATATTATTACT
1 GGCAGCTTTGCTGAGATATTATTACT
*
44731267 GGCAGCTTTGCTGCGATATT
1 GGCAGCTTTGCTGAGATATT
44731287 GGTGTGTTGG
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.39
Consensus pattern (26 bp):
GGCAGCTTTGCTGAGATATTATTACT
Found at i:44739683 original size:18 final size:18
Alignment explanation
Indices: 44739644--44739741 Score: 155
Period size: 18 Copynumber: 5.5 Consensus size: 18
44739634 AATGATATGT
44739644 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
44739661 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
44739679 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
44739696 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
44739714 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
44739733 AATCTTAGA
1 AATCTTAGA
44739742 AGATATGATT
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
17 30 0.41
18 33 0.45
19 11 0.15
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:44739684 original size:35 final size:35
Alignment explanation
Indices: 44739635--44739741 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
44739625 ATAATCTTCA
*
44739635 ATGATATGTAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
44739671 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
44739706 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
44739742 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 50 0.74
36 5 0.07
37 13 0.19
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:44740073 original size:21 final size:21
Alignment explanation
Indices: 44740047--44740155 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
44740037 ATTTTTAATT
44740047 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
44740068 TTTTATTTATATT-TTTA--A
1 TATTATATATATTATTTATTA
* * *
44740086 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
44740105 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
44740128 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
44740149 TATTATA
1 TATTATA
44740156 CATTATTTTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 9 0.14
18 4 0.06
19 2 0.03
20 9 0.14
21 24 0.37
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:44740083 original size:12 final size:13
Alignment explanation
Indices: 44740045--44740084 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
44740035 TTATTTTTAA
44740045 TTTA-TTATATAT
1 TTTATTTATATAT
*
44740057 ATTATTTAT-TAT
1 TTTATTTATATAT
44740069 TTTATTTATAT-T
1 TTTATTTATATAT
44740081 TTTA
1 TTTA
44740085 AAATTTGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 19 0.79
13 5 0.21
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTATTTATATAT
Found at i:44740112 original size:7 final size:7
Alignment explanation
Indices: 44740095--44740201 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
44740085 AAATTTGTAA
44740095 ATTAT-T
1 ATTATAT
44740101 ATTATAT
1 ATTATAT
44740108 ATTATAT
1 ATTATAT
44740115 -TT-TA-
1 ATTATAT
44740119 ACTTATAT
1 A-TTATAT
44740127 ATCTTATAT
1 A--TTATAT
*
44740136 ATTTATTT
1 A-TTATAT
44740144 ATT-TAT
1 ATTATAT
*
44740150 ATTATAC
1 ATTATAT
44740157 ATTAT-T
1 ATTATAT
* *
44740163 -TTAAAA
1 ATTATAT
*
44740169 ACTTACAT
1 A-TTATAT
*
44740177 -TTTTAT
1 ATTATAT
44740183 ATTATAT
1 ATTATAT
*
44740190 ATTATAA
1 ATTATAT
44740197 ATTAT
1 ATTAT
44740202 TTCATTTATT
Statistics
Matches: 77, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 35 0.45
8 11 0.14
9 8 0.10
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:44740542 original size:3 final size:3
Alignment explanation
Indices: 44740534--44740568 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
44740524 TATGTTACTA
*
44740534 TAT TAT TAT TAT TAT TAT TAT TTT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
44740569 GTATTTGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:44740757 original size:2 final size:2
Alignment explanation
Indices: 44740750--44740776 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
44740740 TTATATTTCT
44740750 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
44740777 TAATTAATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:44746469 original size:27 final size:27
Alignment explanation
Indices: 44746393--44746482 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
44746383 TTTAGTTTAC
* *
44746393 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
44746420 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
44746447 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
44746474 TAAAATTAC
1 TAAAATTAC
44746483 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:44746492 original size:54 final size:54
Alignment explanation
Indices: 44746393--44746499 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
44746383 TTTAGTTTAC
* * *
44746393 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
44746447 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
44746500 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:44746507 original size:27 final size:27
Alignment explanation
Indices: 44746477--44746537 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
44746467 CGACTTGTAA
44746477 AATTACCAAAGTACCCCCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
* **** *
44746504 AATTATCGTTTTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
44746531 AATTACC
1 AATTACC
44746538 GTTTTACCCT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:44746525 original size:81 final size:81
Alignment explanation
Indices: 44746434--44746619 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 81
44746424 AATACTGAAA
* * * * *
44746434 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTATAAAATTACCAAAGTACCCCCAATT
44746499 TACAGAATTA-TCGTTT
66 TACAGAATTACT-GTTT
* * * *** * **** *
44746515 TACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTCAATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTATAAAATTACCAAAGTACCCCCAATT
44746580 TACAGAATTACTGTTT
66 TACAGAATTACTGTTT
44746596 TACCCTCGATTTATAAAATTACCG
1 TACCCTCGATTTATAAAATTACCG
44746620 TTTTACCCTC
Statistics
Matches: 84, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
81 83 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTATAAAATTACCAAAGTACCCCCAATT
TACAGAATTACTGTTT
Found at i:44746535 original size:54 final size:54
Alignment explanation
Indices: 44746488--44746806 Score: 440
Period size: 54 Copynumber: 5.9 Consensus size: 54
44746478 ATTACCAAAG
* * * * * * *
44746488 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
*
44746542 TACCCTCGATTTATAAAATTACCGTTTTACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
44746596 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
*
44746650 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * *
44746704 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * * ** *
44746758 TTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
44746807 AAAAATACCC
Statistics
Matches: 239, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 239 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:44746540 original size:27 final size:27
Alignment explanation
Indices: 44746488--44746806 Score: 395
Period size: 27 Copynumber: 11.8 Consensus size: 27
44746478 ATTACCAAAG
* *
44746488 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
44746515 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
44746542 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
44746569 TACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
44746596 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
44746623 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
44746650 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
44746677 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
44746704 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
44746731 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * **
44746758 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
44746785 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
44746807 AAAAATACCC
Statistics
Matches: 250, Mismatches: 42, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 250 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:44746815 original size:27 final size:27
Alignment explanation
Indices: 44746785--44746897 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 27
44746775 ATTACTATTT
* *
44746785 TACCCTCGATTTACAAAATTACAAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
44746812 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
44746839 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* *
44746866 TACCCAT-GGTTTGA-AAAATTACTAAAA
1 TACCC-TCGATTT-ATAAAATTACCAAAA
44746893 TACCC
1 TACCC
44746898 CTGTAGGGTA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 2 0.03
27 71 0.97
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:44746843 original size:54 final size:54
Alignment explanation
Indices: 44746785--44746898 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
44746775 ATTACTATTT
*
44746785 TACCCTCGA-TTTACAAAATTACAAAAATACCC-TCAATTTGTAAAATTACCAAAA
1 TACCC-CGAGTTTACAAAATTACAAAAATACCCAT-AATTTGAAAAATTACCAAAA
* ** * ** *
44746839 TACCCCTAGTTTGTAAAATTACCAAAATACCCATGGTTTGAAAAATTACTAAAA
1 TACCCCGAGTTTACAAAATTACAAAAATACCCATAATTTGAAAAATTACCAAAA
44746893 TACCCC
1 TACCCC
44746899 TGTAGGGTAA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 2 0.04
54 47 0.94
55 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.28
Consensus pattern (54 bp):
TACCCCGAGTTTACAAAATTACAAAAATACCCATAATTTGAAAAATTACCAAAA
Found at i:44746909 original size:54 final size:54
Alignment explanation
Indices: 44746799--44746925 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
44746789 CTCGATTTAC
* **
44746799 AAAATTACAAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACAAAAATACCCTCAATTTGAAAAATTACCAAAATACCCCTAGTGGGT
* ** *
44746853 AAAATTACCAAAATACCCAT-GGTTTGAAAAATTACTAAAATACCCCT-GTAGGGT
1 AAAATTACAAAAATACCC-TCAATTTGAAAAATTACCAAAATACCCCTAGT-GGGT
**
44746907 AAAATTACTGAAATACCCT
1 AAAATTACAAAAATACCCT
44746926 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
53 3 0.05
54 58 0.94
55 1 0.02
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.28
Consensus pattern (54 bp):
AAAATTACAAAAATACCCTCAATTTGAAAAATTACCAAAATACCCCTAGTGGGT
Found at i:44746910 original size:27 final size:27
Alignment explanation
Indices: 44746824--44746943 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
44746814 CCCTCAATTT
**
44746824 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
44746851 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
44746878 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
44746905 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
44746932 GTAAAATTACCA
1 GTAAAATTACCA
44746944 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:44750865 original size:27 final size:27
Alignment explanation
Indices: 44750789--44750878 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
44750779 TTTAGTTTAC
* *
44750789 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
44750816 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
44750843 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
44750870 TAAAATTAC
1 TAAAATTAC
44750879 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:44750888 original size:54 final size:54
Alignment explanation
Indices: 44750789--44750895 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
44750779 TTTAGTTTAC
* * *
44750789 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
44750843 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
44750896 ACAAATTATC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:44750955 original size:27 final size:27
Alignment explanation
Indices: 44750884--44751200 Score: 395
Period size: 27 Copynumber: 11.8 Consensus size: 27
44750874 ATTACCAAAG
* *
44750884 TACCCCCGATTTAC-AAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
44750910 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
44750936 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
44750963 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
44750990 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
44751017 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
44751044 TACCATCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
44751071 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
44751098 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * * **
44751125 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * * * **
44751152 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTT
44751179 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
44751201 AGAAATACCC
Statistics
Matches: 250, Mismatches: 39, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
25 8 0.03
26 20 0.08
27 222 0.89
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:44751209 original size:27 final size:27
Alignment explanation
Indices: 44751179--44751264 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
44751169 ATTACTATTT
*
44751179 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
44751206 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
44751233 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
44751260 TACCC
1 TACCC
44751265 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:44751227 original size:54 final size:54
Alignment explanation
Indices: 44750884--44751200 Score: 449
Period size: 54 Copynumber: 5.9 Consensus size: 54
44750874 ATTACCAAAG
* * * *
44750884 TACCCCCGATTTAC-AAATTATCGTTTTACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
44750936 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
*
44750990 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * *
44751044 TACCATCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
44751098 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * ** *
44751152 TTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
44751201 AGAAATACCC
Statistics
Matches: 239, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
52 13 0.05
53 16 0.07
54 210 0.88
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:44751251 original size:54 final size:53
Alignment explanation
Indices: 44751193--44751319 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
44751183 CTCGATTTAC
* **
44751193 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
44751247 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
44751301 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
44751320 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:44751271 original size:27 final size:27
Alignment explanation
Indices: 44751193--44751291 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
44751183 CTCGATTTAC
*
44751193 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
44751220 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
44751247 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
44751274 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
44751292 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:44751304 original size:27 final size:27
Alignment explanation
Indices: 44751218--44751337 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
44751208 CCCTCAATTT
**
44751218 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
44751245 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
44751272 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
44751299 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
44751326 GTAAAATTACCA
1 GTAAAATTACCA
44751338 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:44754977 original size:14 final size:13
Alignment explanation
Indices: 44754958--44755008 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
44754948 AAATAAAAAT
44754958 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
* *
44754971 AAGAAAAAGAGAA
1 AAAAAAAAAAGAA
*
44754984 AAAAATAAAGAGAA
1 AAAAA-AAAAAGAA
44754998 AAAAGAAAAAA
1 AAAA-AAAAAA
44755009 TGGAGAGGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
13 15 0.47
14 16 0.50
15 1 0.03
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:44754977 original size:22 final size:22
Alignment explanation
Indices: 44754947--44755008 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
44754937 TTCTATTTCA
* *
44754947 AAAATAAAAATAAAAAAAAAAG
1 AAAAGAAAAAGAAAAAAAAAAG
*
44754969 AAAAGAAAAAGAGAAAAAAATA-
1 AAAAGAAAAAGA-AAAAAAAAAG
*
44754991 AAGAGAAAAAAGAAAAAA
1 AAAAG-AAAAAGAAAAAA
44755009 TGGAGAGGCC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
22 19 0.56
23 15 0.44
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (22 bp):
AAAAGAAAAAGAAAAAAAAAAG
Found at i:44755015 original size:20 final size:22
Alignment explanation
Indices: 44754961--44755008 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
44754951 TAAAAATAAA
*
44754961 AAAAAAAGAAA-AGAAAAAGAG
1 AAAAAAATAAAGAGAAAAAGAG
44754982 AAAAAAATAAAGAGAAAAA-AG
1 AAAAAAATAAAGAGAAAAAGAG
44755003 AAAAAA
1 AAAAAA
44755009 TGGAGAGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (22 bp):
AAAAAAATAAAGAGAAAAAGAG
Found at i:44756140 original size:119 final size:119
Alignment explanation
Indices: 44755925--44756518 Score: 983
Period size: 119 Copynumber: 5.0 Consensus size: 119
44755915 CAGATCGAAG
*
44755925 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAAATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
44755990 TTACAAGGAACAAATCGAGGATATAGTAGATTTGACTCTCAGACATTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
44756044 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
44756109 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
44756163 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTTTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
44756228 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
44756282 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGATTTGGTATTCTTGCGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * *
44756347 TTACAAGAAACAAATCGAGGACATAGTAGATTTGACTCTCAAACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * * * *
44756401 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * *
44756466 TTACAAGGAACAAATCGAGGACATTA-CAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACA-TAGCAGATTTGACTCTCAGACGTTCTCAAA
44756519 CAAACTCAAG
Statistics
Matches: 451, Mismatches: 23, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
119 449 1.00
120 2 0.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:44756673 original size:84 final size:83
Alignment explanation
Indices: 44756442--44756711 Score: 441
Period size: 83 Copynumber: 3.2 Consensus size: 83
44756432 GAAGTAGATC
* *
44756442 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTACAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
*
44756507 AATGTTCTCAAACAAACT
66 AATGTTCTCAAACAGACT
* *
44756525 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGAACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
44756590 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
44756608 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTTGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTC
44756673 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* *
44756692 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
44756712 ACAAATCGAA
Statistics
Matches: 174, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
83 97 0.56
84 77 0.44
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:44757144 original size:18 final size:18
Alignment explanation
Indices: 44757105--44757202 Score: 155
Period size: 18 Copynumber: 5.5 Consensus size: 18
44757095 AATGATATGT
44757105 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
44757122 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
44757140 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTAC
*
44757157 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTAC
44757175 AATCTTAGATATGATATAC
1 AATCTTAGATATGAT-TAC
44757194 AATCTTAGA
1 AATCTTAGA
44757203 AGATATGATT
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
17 30 0.41
18 33 0.45
19 11 0.15
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (18 bp):
AATCTTAGATATGATTAC
Found at i:44757145 original size:35 final size:35
Alignment explanation
Indices: 44757096--44757202 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
44757086 ATAATCTTCA
*
44757096 ATGATATGTAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
44757132 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
44757167 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
44757203 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
35 50 0.74
36 5 0.07
37 13 0.19
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:44757541 original size:40 final size:39
Alignment explanation
Indices: 44757497--44757612 Score: 102
Period size: 36 Copynumber: 3.1 Consensus size: 39
44757487 CTTTTAAACT
44757497 TATTTTTAATTTATTATATATATTATTTATTATTTATTTA
1 TATTTTTAA-TTATTATATATATTATTTATTATTTATTTA
* * * *
44757537 TATTTTTAA-AATT-TGTAAATTA-TTATTATATA-TTA
1 TATTTTTAATTATTATATATATTATTTATTATTTATTTA
* * *
44757572 TA-TTTTAA--CTTATATATCTTATATATTTATTTATTTA
1 TATTTTTAATTATTATATATATTATTTA-TTATTTATTTA
44757609 TATT
1 TATT
44757613 ATACATTATT
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
33 2 0.03
34 12 0.20
35 7 0.11
36 15 0.25
37 12 0.20
38 4 0.07
40 9 0.15
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (39 bp):
TATTTTTAATTATTATATATATTATTTATTATTTATTTA
Found at i:44757572 original size:7 final size:7
Alignment explanation
Indices: 44757555--44757661 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
44757545 AAATTTGTAA
44757555 ATTAT-T
1 ATTATAT
44757561 ATTATAT
1 ATTATAT
44757568 ATTATAT
1 ATTATAT
44757575 -TT-TA-
1 ATTATAT
44757579 ACTTATAT
1 A-TTATAT
44757587 ATCTTATAT
1 A--TTATAT
*
44757596 ATTTATTT
1 A-TTATAT
44757604 ATT-TAT
1 ATTATAT
*
44757610 ATTATAC
1 ATTATAT
44757617 ATTAT-T
1 ATTATAT
* *
44757623 -TTAAAA
1 ATTATAT
*
44757629 ACTTACAT
1 A-TTATAT
*
44757637 -TTTTAT
1 ATTATAT
44757643 ATTATAT
1 ATTATAT
*
44757650 ATTATAA
1 ATTATAT
44757657 ATTAT
1 ATTAT
44757662 TTCATTTATT
Statistics
Matches: 77, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 35 0.45
8 11 0.14
9 8 0.10
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:44757605 original size:21 final size:21
Alignment explanation
Indices: 44757563--44757697 Score: 65
Period size: 21 Copynumber: 6.7 Consensus size: 21
44757553 AAATTATTAT
*
44757563 TATATATTATAT-TTTAACTTA
1 TATATATTATATATTT-ATTTA
*
44757584 TATATCTTATATATTTATTTA
1 TATATATTATATATTTATTTA
* *
44757605 TTTATATTATACA-TTATTT-
1 TATATATTATATATTTATTTA
* * * * *
44757624 TAAAAACTTACATTTTTATAT-
1 TATATA-TTATATATTTATTTA
*
44757645 TATATATTATA-AATTATTTCA
1 TATATATTATATATTTATTT-A
44757666 T-T-TATTAT-TA-TT-TTTA
1 TATATATTATATATTTATTTA
*
44757682 TATACTATCATATATT
1 TATA-TATTATATATT
44757698 ATCTATTTTA
Statistics
Matches: 84, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
16 2 0.02
17 4 0.05
18 2 0.02
19 20 0.24
20 17 0.20
21 36 0.43
22 3 0.04
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (21 bp):
TATATATTATATATTTATTTA
Found at i:44758003 original size:3 final size:3
Alignment explanation
Indices: 44757995--44758029 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
44757985 TATGTTACTA
*
44757995 TAT TAT TAT TAT TAT TAT TAT TTT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
44758030 GTATTTGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:44758218 original size:2 final size:2
Alignment explanation
Indices: 44758211--44758239 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
44758201 TTATATTTCT
44758211 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
44758240 TAATTAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:44759208 original size:26 final size:26
Alignment explanation
Indices: 44759177--44759232 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
44759167 TTACTAAGTA
44759177 TTTTACATACTTACTCGGGTTACTAC
1 TTTTACATACTTACTCGGGTTACTAC
*
44759203 TTTTACATACTTACTCTGGTTACTAC
1 TTTTACATACTTACTCGGGTTACTAC
44759229 TTTT
1 TTTT
44759233 TTTATAGATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.48
Consensus pattern (26 bp):
TTTTACATACTTACTCGGGTTACTAC
Found at i:44764507 original size:15 final size:15
Alignment explanation
Indices: 44764487--44764516 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
44764477 TTAATCTAAC
44764487 TTTAATTTTATTAAA
1 TTTAATTTTATTAAA
44764502 TTTAATTTTATTAAA
1 TTTAATTTTATTAAA
44764517 GTTGTAATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTAATTTTATTAAA
Found at i:44770543 original size:46 final size:46
Alignment explanation
Indices: 44770490--44770665 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
44770480 TATTTGGGCA
44770490 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
44770536 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
44770583 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
44770629 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44770666 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:44770645 original size:93 final size:93
Alignment explanation
Indices: 44770486--44770657 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
44770476 GGGATATTTG
* *
44770486 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
44770551 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
44770579 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
44770644 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
44770658 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:44772927 original size:27 final size:27
Alignment explanation
Indices: 44772587--44772926 Score: 468
Period size: 27 Copynumber: 12.6 Consensus size: 27
44772577 AAAGTACTCC
44772587 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
44772614 C-AGGTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
44772641 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
44772668 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
44772695 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
44772722 CGATTTACAGAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
44772749 CAATTTACATAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
44772776 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
44772803 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
44772830 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
44772857 CGATTTATAGAATTACTGTTTCACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
44772884 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
44772911 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
44772927 TAAAATACCC
Statistics
Matches: 279, Mismatches: 30, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 275 0.99
28 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:44772964 original size:81 final size:80
Alignment explanation
Indices: 44772635--44772970 Score: 244
Period size: 81 Copynumber: 4.2 Consensus size: 80
44772625 ATTACCGTTT
** * * ****
44772635 TACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-AGT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGA-T
* * ***
44772699 TTACAGAATTACTATTT
65 TTATAAAATTAC-AGAA
* * * **** *
44772716 TACCCTCGATTTACAGAATTACCGTTTTACCCCCAATTTACATAATTACCGTTTTACCCCCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
* * **
44772781 TACATAATTATC-GTTT
66 TATAAAATTA-CAG-AA
* ***
44772797 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
* * **
44772862 TATAGAATTACTGTT
66 TATAAAATTACAGAA
* * * * *
44772877 TCACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGT
1 T-ACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGAT
*
44772942 TTGTAAAATTACAGAAA
65 TTATAAAATTACAG-AA
*
44772959 TACCCTCAATTT
1 TACCCTCGATTT
44772971 GTAAAATTAC
Statistics
Matches: 217, Mismatches: 32, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
80 4 0.02
81 210 0.97
82 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TATAAAATTACAGAA
Found at i:44772971 original size:27 final size:27
Alignment explanation
Indices: 44772905--44772991 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
44772895 ATTACTGTTT
**
44772905 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
* *
44772932 TACCCTTGGTTTGTAAAATTAC-AGAAA
1 TACCCTCGATTTGTAAAATTACTA-AAA
* *
44772959 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
*
44772986 CACCCT
1 TACCCT
44772992 TGTAGGATGA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.02
27 48 0.96
28 1 0.02
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACTAAAA
Found at i:44773054 original size:27 final size:26
Alignment explanation
Indices: 44773014--44773084 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 26
44773004 TGACTAAAAC
44773014 ACCCCTATTAGGTAAAAAGACCGTAA-
1 ACCCCT-TTAGGTAAAAAGACCGTAAT
**
44773040 AGCCCCTTTAGGGTAAAGTGACCGTAAT
1 A-CCCCTTTA-GGTAAAAAGACCGTAAT
*
44773068 ACCCCTGTATGGTAAAA
1 ACCCCTTTA-GGTAAAA
44773085 TGACGAATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
26 4 0.11
27 32 0.86
28 1 0.03
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.23
Consensus pattern (26 bp):
ACCCCTTTAGGTAAAAAGACCGTAAT
Found at i:44773088 original size:27 final size:27
Alignment explanation
Indices: 44773024--44773088 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
44773014 ACCCCTATTA
* *
44773024 GGTAAAAAGACCGTAAAGCCCCTTTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
44773051 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
44773078 GGTAAAATGAC
1 GGTAAAATGAC
44773089 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:44774348 original size:9 final size:9
Alignment explanation
Indices: 44774336--44774392 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
44774326 TTTGATAAAC
44774336 ATGATATGT
1 ATGATATGT
*
44774345 ATGATATGCAC
1 ATGATATG--T
*
44774356 ATGACATGT
1 ATGATATGT
*
44774365 ATGATATGCAC
1 ATGATATG--T
44774376 ATGATATGT
1 ATGATATGT
44774385 ATGATATG
1 ATGATATG
44774393 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:44774359 original size:20 final size:20
Alignment explanation
Indices: 44774334--44774396 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
44774324 ATTTTGATAA
44774334 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
44774354 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
44774374 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
44774394 ACA
1 ACA
44774397 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:44774508 original size:24 final size:24
Alignment explanation
Indices: 44774451--44774643 Score: 286
Period size: 24 Copynumber: 8.2 Consensus size: 24
44774441 GAGGAAGTGA
44774451 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
44774474 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
44774498 AAAAGGACTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
44774522 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
44774545 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
44774569 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
44774593 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
44774616 TAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
44774639 AAAAG
1 AAAAG
44774644 AGGCAAGGCC
Statistics
Matches: 154, Mismatches: 13, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
22 9 0.06
23 57 0.37
24 88 0.57
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:44774520 original size:47 final size:48
Alignment explanation
Indices: 44774451--44774643 Score: 286
Period size: 47 Copynumber: 4.1 Consensus size: 48
44774441 GAGGAAGTGA
*
44774451 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
* *
44774498 AAAAGGACTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
*
44774545 TAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
* * * *
44774593 AAAAGGGCTTACGCCCCAGTTAT-TAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
44774639 AAAAG
1 AAAAG
44774644 AGGCAAGGCC
Statistics
Matches: 133, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
46 14 0.11
47 77 0.58
48 42 0.32
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
Found at i:44774662 original size:71 final size:71
Alignment explanation
Indices: 44774451--44774643 Score: 343
Period size: 71 Copynumber: 2.7 Consensus size: 71
44774441 GAGGAAGTGA
* *
44774451 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGACTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
44774516 GTTATC
66 GTTATC
44774522 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
44774587 GTTATC
66 GTTATC
* *
44774593 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTTTG-CCCAGTTATTAAAAG
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAG
44774644 AGGCAAGGCC
Statistics
Matches: 118, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
70 14 0.12
71 104 0.88
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:44786016 original size:42 final size:42
Alignment explanation
Indices: 44785961--44786085 Score: 169
Period size: 42 Copynumber: 3.0 Consensus size: 42
44785951 TGCTTTAGAA
* *
44785961 CCACACAGCCAAGGACATGGGCATGTGCCCAGGCCATGTGAG
1 CCACACAGGCAAGGACATGGGCATGTGCCCAGGCCATGTAAG
* * * *
44786003 CCACACGGGCAAGGACATGAGCGTGTGCCCAGGCCGTGTAAG
1 CCACACAGGCAAGGACATGGGCATGTGCCCAGGCCATGTAAG
* * *
44786045 CCACACAAGCAAGGACATGGGCATTTGCCCAGGCTATGTAA
1 CCACACAGGCAAGGACATGGGCATGTGCCCAGGCCATGTAA
44786086 CTCACTGTTT
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.27, C:0.29, G:0.30, T:0.14
Consensus pattern (42 bp):
CCACACAGGCAAGGACATGGGCATGTGCCCAGGCCATGTAAG
Found at i:44788490 original size:5 final size:5
Alignment explanation
Indices: 44788445--44788471 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
44788435 AACACATTCA
44788445 ATTTC ATTTC ATTTC ATTTC ATTTC AT
1 ATTTC ATTTC ATTTC ATTTC ATTTC AT
44788472 ATTATCTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.19, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTTC
Found at i:44788866 original size:40 final size:40
Alignment explanation
Indices: 44788776--44788854 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
44788766 CATCATCAGA
*
44788776 AAGATCAAAGTAGTCTATGGTCAACGCTATCAGAATATAG
1 AAGATCAAAGTAATCTATGGTCAACGCTATCAGAATATAG
*
44788816 AAGATCAAAGTAATCTATGGTCAACGCTATCATAATATA
1 AAGATCAAAGTAATCTATGGTCAACGCTATCAGAATATA
44788855 TTGGCACAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (40 bp):
AAGATCAAAGTAATCTATGGTCAACGCTATCAGAATATAG
Found at i:44790922 original size:38 final size:37
Alignment explanation
Indices: 44790865--44791138 Score: 314
Period size: 38 Copynumber: 7.2 Consensus size: 37
44790855 TTATACTTTT
**
44790865 TGTTTGGCAATTCGATTGGATCAGCTCTTATGAGCTTC
1 TGTTTGGTGATTCG-TTGGATCAGCTCTTATGAGCTTC
*
44790903 TGTTTGGCGATTCAGTTGGATCAGCTCTTATGAGCTTC
1 TGTTTGGTGATTC-GTTGGATCAGCTCTTATGAGCTTC
* * *
44790941 TGTTTGGTGTTTTGGTCGGATCAGCTCTTATGAGCTTC
1 TGTTTGGTG-ATTCGTTGGATCAGCTCTTATGAGCTTC
* * *
44790979 TGTTTGGTGTTTTGATTGGATCAGCTCTTATGAGCTTT
1 TGTTTGGTGATTCG-TTGGATCAGCTCTTATGAGCTTC
* * *
44791017 TGTTTGGCGATTCGATTGGATTAGCTCTTGTGAGCTTC
1 TGTTTGGTGATTCG-TTGGATCAGCTCTTATGAGCTTC
* * *
44791055 TGTTTGGTGATTTAGTTCGATCAACTCTTATGAGCTTC
1 TGTTTGGTGA-TTCGTTGGATCAGCTCTTATGAGCTTC
* * *
44791093 TGTTTTGTGTTTCGGTTGGATCAGCTCTTATAAGCTTC
1 TGTTTGGTGATTC-GTTGGATCAGCTCTTATGAGCTTC
*
44791131 TGTCTGGT
1 TGTTTGGT
44791139 CTGTTCGGTT
Statistics
Matches: 203, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
37 6 0.03
38 191 0.94
39 6 0.03
ACGTcount: A:0.14, C:0.16, G:0.26, T:0.44
Consensus pattern (37 bp):
TGTTTGGTGATTCGTTGGATCAGCTCTTATGAGCTTC
Found at i:44790998 original size:76 final size:75
Alignment explanation
Indices: 44790875--44791138 Score: 348
Period size: 76 Copynumber: 3.5 Consensus size: 75
44790865 TGTTTGGCAA
* * *
44790875 TTCGATTGGATCAGCTCTTATGAGCTTCTGTTTGGCGATTCAGTTGGATCAGCTCTTATGAGCTT
1 TTCGGTTGGATCAGCTCTTATGAGCTTCTGTTTGGTG-TTTAGTTGGATCAGCTCTTATGAGCTT
44790940 CTGTTTGGTGT
65 CTGTTTGGTGT
* * *
44790951 TTTGGTCGGATCAGCTCTTATGAGCTTCTGTTTGGTGTTTTGATTGGATCAGCTCTTATGAGCTT
1 TTCGGTTGGATCAGCTCTTATGAGCTTCTGTTTGGTGTTTAG-TTGGATCAGCTCTTATGAGCTT
* * *
44791016 TTGTTTGGCGA
65 CTGTTTGGTGT
* * * * *
44791027 TTCGATTGGATTAGCTCTTGTGAGCTTCTGTTTGGTGATTTAGTTCGATCAACTCTTATGAGCTT
1 TTCGGTTGGATCAGCTCTTATGAGCTTCTGTTTGGTG-TTTAGTTGGATCAGCTCTTATGAGCTT
*
44791092 CTGTTTTGTGT
65 CTGTTTGGTGT
* *
44791103 TTCGGTTGGATCAGCTCTTATAAGCTTCTGTCTGGT
1 TTCGGTTGGATCAGCTCTTATGAGCTTCTGTTTGGT
44791139 CTGTTCGGTT
Statistics
Matches: 160, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
75 3 0.02
76 153 0.96
77 4 0.03
ACGTcount: A:0.14, C:0.16, G:0.26, T:0.44
Consensus pattern (75 bp):
TTCGGTTGGATCAGCTCTTATGAGCTTCTGTTTGGTGTTTAGTTGGATCAGCTCTTATGAGCTTC
TGTTTGGTGT
Found at i:44791077 original size:114 final size:114
Alignment explanation
Indices: 44790875--44791133 Score: 396
Period size: 114 Copynumber: 2.3 Consensus size: 114
44790865 TGTTTGGCAA
44790875 TTCGATTGGATCAGCTCTTATGAGCTTCTGTTTGGCGATTCAGTTGGATCAGCTCTTATGAGCTT
1 TTCGATTGGATCAGCTCTTATGAGCTTCTGTTTGGCGATTCAGTTGGATCAGCTCTTATGAGCTT
* *
44790940 CTGTTTGGTGTTTTGGTCGGATCAGCTCTTATGAGCTTCTGTTTGGTGT
66 CTGTTTGGTGTTTAGGTCGGATCAACTCTTATGAGCTTCTGTTTGGTGT
* * * *
44790989 TTTGATTGGATCAGCTCTTATGAGCTTTTGTTTGGCGATTC-GATTGGATTAGCTCTTGTGAGCT
1 TTCGATTGGATCAGCTCTTATGAGCTTCTGTTTGGCGATTCAG-TTGGATCAGCTCTTATGAGCT
* *
44791053 TCTGTTTGGTGATTTAGTTC-GATCAACTCTTATGAGCTTCTGTTTTGTGT
65 TCTGTTTGGTG-TTTAGGTCGGATCAACTCTTATGAGCTTCTGTTTGGTGT
* *
44791103 TTCGGTTGGATCAGCTCTTATAAGCTTCTGT
1 TTCGATTGGATCAGCTCTTATGAGCTTCTGT
44791134 CTGGTCTGTT
Statistics
Matches: 131, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
113 1 0.01
114 124 0.95
115 6 0.05
ACGTcount: A:0.14, C:0.16, G:0.25, T:0.44
Consensus pattern (114 bp):
TTCGATTGGATCAGCTCTTATGAGCTTCTGTTTGGCGATTCAGTTGGATCAGCTCTTATGAGCTT
CTGTTTGGTGTTTAGGTCGGATCAACTCTTATGAGCTTCTGTTTGGTGT
Found at i:44795779 original size:12 final size:12
Alignment explanation
Indices: 44795762--44795786 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
44795752 GTTCACCTAA
44795762 TATGATTCTATT
1 TATGATTCTATT
44795774 TATGATTCTATT
1 TATGATTCTATT
44795786 T
1 T
44795787 TATCTCATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (12 bp):
TATGATTCTATT
Found at i:44797996 original size:40 final size:40
Alignment explanation
Indices: 44797951--44798118 Score: 144
Period size: 40 Copynumber: 4.2 Consensus size: 40
44797941 CGGAATATAA
44797951 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
44797991 CCGGATAGACT-ATCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCA-CTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
44798031 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * * *
44798071 CCGGATAAAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
44798111 CCGGATAT
1 CCGGATAT
44798119 CATTCAATTT
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
39 2 0.02
40 98 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:44798101 original size:80 final size:80
Alignment explanation
Indices: 44797967--44798116 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
44797957 ATAATCACGT
* * *
44797967 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGACTATCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATATCTCGCACGAATGCCTTCGGGAT-TTAGC
44798031 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
44798047 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATATCTC-GCACGAA-TGCCTTCGGGATTTAG
44798110 CCCGGAT
64 CCCGGAT
44798117 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATATCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:44800261 original size:21 final size:21
Alignment explanation
Indices: 44800218--44800262 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
44800208 CACATAATCG
**
44800218 CATTTCATTTTGTTAGATTCA
1 CATTTCATTTTGTTAGAGCCA
*
44800239 CATTTTATTTTGTTAGAGCCA
1 CATTTCATTTTGTTAGAGCCA
44800260 CAT
1 CAT
44800263 ATCACTTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.49
Consensus pattern (21 bp):
CATTTCATTTTGTTAGAGCCA
Found at i:44804869 original size:21 final size:21
Alignment explanation
Indices: 44804811--44804877 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
44804801 ATGTCTCAAA
* *
44804811 ACATCACTTCAAAGTCTTAAG
1 ACATCTCTTCAAAGTCTTGAG
* *
44804832 AC-TCATTCTT-GATGTCTTGAG
1 ACATC--TCTTCAAAGTCTTGAG
*
44804853 ACATCTCTTCAAAGTCTTGAA
1 ACATCTCTTCAAAGTCTTGAG
44804874 ACAT
1 ACAT
44804878 TTTGTCTTCT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
20 6 0.17
21 24 0.69
22 5 0.14
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (21 bp):
ACATCTCTTCAAAGTCTTGAG
Found at i:44815685 original size:30 final size:30
Alignment explanation
Indices: 44815639--44815697 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
44815629 TTTATGAGGC
44815639 TAGGGGCAAAAGTGTAATTATGACAAAATT
1 TAGGGGCAAAAGTGTAATTATGACAAAATT
* * * *
44815669 TAGGGGTAAAATTGTAATTTTGCCAAAAT
1 TAGGGGCAAAAGTGTAATTATGACAAAAT
44815698 ATGATTCTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGACAAAATT
Found at i:44816324 original size:72 final size:72
Alignment explanation
Indices: 44816238--44816398 Score: 209
Period size: 72 Copynumber: 2.2 Consensus size: 72
44816228 TGTGGGTCCA
** *
44816238 GGTACTGACTTTGTGTATAAACTAGTGAGTAACTCGCTGAGC-GAGCA-TATCATGTTAATGCTT
1 GGTACTGACTTTGTGTATAAACTAGTGAGTAACTCAATGAGCGGA-CATTA-CATGATAATGCTT
44816301 TGGGGCCCG
64 TGGGGCCCG
* *
44816310 GGTACTGACTTTGTGTATAAACTTGTGAGTAGCTCAATGAGCGGACATTACATGATAATGCTTTG
1 GGTACTGACTTTGTGTATAAACTAGTGAGTAACTCAATGAGCGGACATTACATGATAATGCTTTG
**
44816375 GGGTTCG
66 GGGCCCG
**
44816382 GGTGTTGACTTTGTGTA
1 GGTACTGACTTTGTGTA
44816399 CAGACCCGTG
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
72 74 0.95
73 4 0.05
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.34
Consensus pattern (72 bp):
GGTACTGACTTTGTGTATAAACTAGTGAGTAACTCAATGAGCGGACATTACATGATAATGCTTTG
GGGCCCG
Found at i:44822154 original size:68 final size:67
Alignment explanation
Indices: 44822082--44822231 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
44822072 CATCATGTGT
* * * *
44822082 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
44822144 ATGTAG
62 ATGTAG
** * *
44822150 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
44822215 AG
66 AG
44822217 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
44822232 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:44822187 original size:64 final size:64
Alignment explanation
Indices: 44822106--44822289 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
44822096 AGACATTATG
* *
44822106 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
44822170 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
44822235 AA
63 AA
* * * *
44822237 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
44822290 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:44832306 original size:23 final size:23
Alignment explanation
Indices: 44832280--44832326 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
44832270 AATTTTCGCC
44832280 TTCAAATTACTTAAAGTTGGTGA
1 TTCAAATTACTTAAAGTTGGTGA
*
44832303 TTCAAATTGCTTAAAGTTGGTGA
1 TTCAAATTACTTAAAGTTGGTGA
44832326 T
1 T
44832327 CTCTCAATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (23 bp):
TTCAAATTACTTAAAGTTGGTGA
Found at i:44836778 original size:13 final size:13
Alignment explanation
Indices: 44836760--44836808 Score: 98
Period size: 13 Copynumber: 3.8 Consensus size: 13
44836750 TTTTTTCGTG
44836760 AAAATTTCATTCA
1 AAAATTTCATTCA
44836773 AAAATTTCATTCA
1 AAAATTTCATTCA
44836786 AAAATTTCATTCA
1 AAAATTTCATTCA
44836799 AAAATTTCAT
1 AAAATTTCAT
44836809 CGATTGGGCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.39
Consensus pattern (13 bp):
AAAATTTCATTCA
Found at i:44862174 original size:33 final size:33
Alignment explanation
Indices: 44862132--44862198 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
44862122 ATCCATATGA
*
44862132 AAATAGACTCATTAAGCTTCAATTTCATAACTT
1 AAATAGACTCATCAAGCTTCAATTTCATAACTT
*
44862165 AAATAGACTCATCAAGCTTTAATTTCATAACTT
1 AAATAGACTCATCAAGCTTCAATTTCATAACTT
44862198 A
1 A
44862199 CTCATCATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (33 bp):
AAATAGACTCATCAAGCTTCAATTTCATAACTT
Found at i:44872155 original size:59 final size:60
Alignment explanation
Indices: 44872088--44872210 Score: 203
Period size: 59 Copynumber: 2.0 Consensus size: 60
44872078 TTATGTTCCC
44872088 AATGCTTATCATAAGCCTAAACGACATTATC-CCTGACTTATTGTATTTATCCATGATAT
1 AATGCTTATCATAAGCCTAAACGACATTATCACCTGACTTATTGTATTTATCCATGATAT
*
44872147 AATGCTTATCATAAGCCTAAACGTCATTATCAATTCCTGACTTATTGTATTTATCCATGATAT
1 AATGCTTATCATAAGCCTAAACGACATTATC-A--CCTGACTTATTGTATTTATCCATGATAT
44872210 A
1 A
44872211 GGTATATTCA
Statistics
Matches: 59, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
59 30 0.51
63 29 0.49
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.38
Consensus pattern (60 bp):
AATGCTTATCATAAGCCTAAACGACATTATCACCTGACTTATTGTATTTATCCATGATAT
Found at i:44873638 original size:24 final size:25
Alignment explanation
Indices: 44873606--44873652 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
44873596 CACAACTCAC
44873606 ATGAGCTTACCAAT-TTCAGCTCGT
1 ATGAGCTTACCAATATTCAGCTCGT
*
44873630 ATGAGCTTACCAATATTTAGCTC
1 ATGAGCTTACCAATATTCAGCTC
44873653 AGAAAAGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (25 bp):
ATGAGCTTACCAATATTCAGCTCGT
Found at i:44878861 original size:29 final size:29
Alignment explanation
Indices: 44878720--44878849 Score: 165
Period size: 29 Copynumber: 4.5 Consensus size: 29
44878710 GACAAGATTG
* * * *
44878720 GCACTAAGTGTGCGGGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* * *
44878750 GCACTAAGTGTGCGAGTTTG--ATTCTATA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
44878778 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
44878807 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
44878836 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
44878850 GATTCACTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.23
29 50 0.56
30 15 0.17
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:44886640 original size:37 final size:37
Alignment explanation
Indices: 44886587--44886686 Score: 182
Period size: 37 Copynumber: 2.7 Consensus size: 37
44886577 CGAATAGTCC
*
44886587 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
44886624 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
44886661 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
44886687 AAAATATATT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:44886888 original size:48 final size:48
Alignment explanation
Indices: 44886830--44887323 Score: 846
Period size: 48 Copynumber: 10.3 Consensus size: 48
44886820 ATATACACAC
*
44886830 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
44886878 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
44886926 ATCTCATTCATATTTCACACTAGCCATTGGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
44886974 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
44887022 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
44887070 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
44887118 ATCTCATACATATTTCACATTAGTCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
44887166 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
44887214 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
44887262 ATCTCATACATA-TTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
44887309 ATCTCATACATATTT
1 ATCTCATACATATTT
44887324 ATCTTGTACA
Statistics
Matches: 427, Mismatches: 18, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 0.11
48 381 0.89
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:44890556 original size:2 final size:2
Alignment explanation
Indices: 44890549--44890582 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
44890539 ACTAATAGAC
*
44890549 GA GA GA GA GA GA GA GA GA GA AA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
44890583 ATGGAATTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:44895577 original size:40 final size:40
Alignment explanation
Indices: 44895513--44895703 Score: 199
Period size: 39 Copynumber: 4.8 Consensus size: 40
44895503 GCTACTCGTT
* * * ***
44895513 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
44895553 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * * *
44895593 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * *
44895632 CCATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * *
44895671 CAATTGCCTTTGGG-CTTAGCTCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
44895704 TTCGCACATT
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:44895630 original size:39 final size:39
Alignment explanation
Indices: 44895549--44895711 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
44895539 TATGGTAACC
* *
44895549 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
44895589 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
44895628 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* * *
44895667 CGCACAATTGCCTTTGGGCTTAGCTCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
44895706 CGCACA
1 CGCACA
44895712 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:44903707 original size:38 final size:39
Alignment explanation
Indices: 44903548--44903709 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
44903538 TATGGTAACC
* *
44903548 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
44903588 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
44903627 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
44903666 CGCACAATTGCCTTCGGGCTTAG-CCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
44903704 CGCACA
1 CGCACA
44903710 TTCATACACA
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 20 0.18
39 76 0.67
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:44906970 original size:12 final size:11
Alignment explanation
Indices: 44906939--44906992 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
44906929 TATTTTACAG
44906939 GTTGTTTTTGGT
1 GTTG-TTTTGGT
* *
44906951 GCTATTTTGGGT
1 GTTGTTTT-GGT
44906963 GTTGTTTTGGT
1 GTTGTTTTGGT
* *
44906974 ATTGTTTTGAT
1 GTTGTTTTGGT
44906985 GTTGTTTT
1 GTTGTTTT
44906993 TAATGTTCTG
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
11 23 0.68
12 11 0.32
ACGTcount: A:0.06, C:0.02, G:0.30, T:0.63
Consensus pattern (11 bp):
GTTGTTTTGGT
Found at i:44906993 original size:23 final size:24
Alignment explanation
Indices: 44906939--44906993 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 24
44906929 TATTTTACAG
* *
44906939 GTTGTTTTTGGTGCTATTTTGGGT
1 GTTGTTTTTGGTACTATTTTGGAT
* *
44906963 GTTG-TTTTGGTATTGTTTT-GAT
1 GTTGTTTTTGGTACTATTTTGGAT
44906985 GTTGTTTTT
1 GTTGTTTTT
44906994 AATGTTCTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 6 0.23
23 16 0.62
24 4 0.15
ACGTcount: A:0.05, C:0.02, G:0.29, T:0.64
Consensus pattern (24 bp):
GTTGTTTTTGGTACTATTTTGGAT
Found at i:44910371 original size:20 final size:20
Alignment explanation
Indices: 44910346--44910466 Score: 81
Period size: 20 Copynumber: 6.1 Consensus size: 20
44910336 TAAATGTTTT
*
44910346 CAGGGGTACCAATGTACAAA
1 CAGGGGCACCAATGTACAAA
**
44910366 CAGGGGCACGTATG-AGCAAA
1 CAGGGGCACCAATGTA-CAAA
*** *
44910386 CAGGCATACCAAAGTACAAA
1 CAGGGGCACCAATGTACAAA
*
44910406 C-GGGGCACGC-ATGTGCAAA
1 CAGGGGCAC-CAATGTACAAA
* *
44910425 CAAGGGTACCGAA-GTACAAA
1 CAGGGGCACC-AATGTACAAA
44910445 CAGGGGCA-CATATGTACAAA
1 CAGGGGCACCA-ATGTACAAA
44910465 CA
1 CA
44910467 AAGGTACCGA
Statistics
Matches: 74, Mismatches: 19, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
18 1 0.01
19 16 0.22
20 55 0.74
21 2 0.03
ACGTcount: A:0.40, C:0.22, G:0.26, T:0.12
Consensus pattern (20 bp):
CAGGGGCACCAATGTACAAA
Found at i:44910396 original size:40 final size:38
Alignment explanation
Indices: 44910352--44910466 Score: 126
Period size: 39 Copynumber: 2.9 Consensus size: 38
44910342 TTTTCAGGGG
44910352 TACCAATGTACAAACAGGGGCACGTATGAGCAAACAGGCA
1 TACCAA-GTACAAACAGGGGCACGTATGAGCAAACAGG-A
* * *
44910392 TACCAAAGTACAAAC-GGGGCACGCATGTGCAAACAAGGG
1 TACC-AAGTACAAACAGGGGCACGTATGAGCAAAC-AGGA
*
44910431 TACCGAAGTACAAACAGGGGCACATATGTA-CAAACA
1 TACC-AAGTACAAACAGGGGCACGTATG-AGCAAACA
44910467 AAGGTACCGA
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
39 32 0.50
40 30 0.47
41 2 0.03
ACGTcount: A:0.41, C:0.23, G:0.24, T:0.12
Consensus pattern (38 bp):
TACCAAGTACAAACAGGGGCACGTATGAGCAAACAGGA
Found at i:44910424 original size:39 final size:40
Alignment explanation
Indices: 44910352--44910453 Score: 136
Period size: 39 Copynumber: 2.6 Consensus size: 40
44910342 TTTTCAGGGG
* *
44910352 TACCAATGTACAAACAGGGGCACGTATGAGCAAAC-AGGCA
1 TACCAAAGTACAAACAGGGGCACGCATGAGCAAACAAGG-A
* *
44910392 TACCAAAGTACAAAC-GGGGCACGCATGTGCAAACAAGGG
1 TACCAAAGTACAAACAGGGGCACGCATGAGCAAACAAGGA
*
44910431 TACCGAAGTACAAACAGGGGCAC
1 TACCAAAGTACAAACAGGGGCAC
44910454 ATATGTACAA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
39 31 0.56
40 24 0.44
ACGTcount: A:0.39, C:0.24, G:0.26, T:0.11
Consensus pattern (40 bp):
TACCAAAGTACAAACAGGGGCACGCATGAGCAAACAAGGA
Found at i:44910467 original size:40 final size:40
Alignment explanation
Indices: 44910349--44910486 Score: 158
Period size: 40 Copynumber: 3.5 Consensus size: 40
44910339 ATGTTTTCAG
44910349 GGGTACC-AATGTACAAACAGGGGCACGTATG-AGCAAAC-A
1 GGGTACCGAA-GTACAAACAGGGGCACGTATGTA-CAAACAA
* * * *
44910388 GGCATACCAAAGTACAAAC-GGGGCACGCATGTGCAAACAA
1 GG-GTACCGAAGTACAAACAGGGGCACGTATGTACAAACAA
*
44910428 GGGTACCGAAGTACAAACAGGGGCACATATGTACAAACAA
1 GGGTACCGAAGTACAAACAGGGGCACGTATGTACAAACAA
* *
44910468 AGGTACCGAAGAACAAACA
1 GGGTACCGAAGTACAAACA
44910487 TTCAACAATT
Statistics
Matches: 84, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
39 32 0.38
40 50 0.60
41 2 0.02
ACGTcount: A:0.42, C:0.22, G:0.25, T:0.11
Consensus pattern (40 bp):
GGGTACCGAAGTACAAACAGGGGCACGTATGTACAAACAA
Found at i:44919089 original size:40 final size:40
Alignment explanation
Indices: 44919041--44919248 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
44919031 TCTTCGAAAT
* * *
44919041 TTAG-CCGGATATAACCACAAGCACAACTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
44919080 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
44919120 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
44919160 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
44919200 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
44919240 TTAGCCCGG
1 TTAGCCCGG
44919249 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:44924996 original size:20 final size:20
Alignment explanation
Indices: 44924971--44925016 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
44924961 TATCGACATG
*
44924971 CAAACAGGGGTACCGAAGTA
1 CAAACAGGGGTACCAAAGTA
*
44924991 CAAACAGGGGTCCCAAAGTA
1 CAAACAGGGGTACCAAAGTA
44925011 CAAACA
1 CAAACA
44925017 TTCAATAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.43, C:0.24, G:0.24, T:0.09
Consensus pattern (20 bp):
CAAACAGGGGTACCAAAGTA
Found at i:44927304 original size:23 final size:25
Alignment explanation
Indices: 44927248--44927309 Score: 69
Period size: 23 Copynumber: 2.6 Consensus size: 25
44927238 CTTACTAATA
* *
44927248 TATGTATGCGAACCCCTACCTATTT
1 TATGCATGCGAACCCTTACCTATTT
*
44927273 TA--CACGCGAACCCTTA-C-ATTT
1 TATGCATGCGAACCCTTACCTATTT
44927294 TATGCATGCGAACCCT
1 TATGCATGCGAACCCT
44927310 GTATTGCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
21 6 0.19
22 1 0.03
23 22 0.71
25 2 0.06
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.31
Consensus pattern (25 bp):
TATGCATGCGAACCCTTACCTATTT
Found at i:44928902 original size:30 final size:29
Alignment explanation
Indices: 44928827--44928907 Score: 90
Period size: 30 Copynumber: 2.8 Consensus size: 29
44928817 AACTTTGGTT
*
44928827 AAAATAACAAAACAATCACTAAACTTAAA
1 AAAATAACAAAACAGTCACTAAACTTAAA
* ** **
44928856 AAAATTACAATTCAGTCACTAAACTTTAGG
1 AAAATAACAAAACAGTCACTAAAC-TTAAA
*
44928886 AAAATAACAAACCAGTCACTAA
1 AAAATAACAAAACAGTCACTAA
44928908 CATTATCGAA
Statistics
Matches: 42, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 20 0.48
30 22 0.52
ACGTcount: A:0.56, C:0.19, G:0.05, T:0.21
Consensus pattern (29 bp):
AAAATAACAAAACAGTCACTAAACTTAAA
Found at i:44932806 original size:9 final size:9
Alignment explanation
Indices: 44932792--44932816 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
44932782 ATTATATAAG
44932792 ATTATTATC
1 ATTATTATC
44932801 ATTATTATC
1 ATTATTATC
44932810 ATTATTA
1 ATTATTA
44932817 GGTAGCGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (9 bp):
ATTATTATC
Found at i:44951293 original size:3 final size:3
Alignment explanation
Indices: 44951285--44951327 Score: 77
Period size: 3 Copynumber: 14.0 Consensus size: 3
44951275 TTTTCCTCTT
44951285 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
44951328 AAATGGTTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:44951666 original size:16 final size:17
Alignment explanation
Indices: 44951629--44951666 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
44951619 TTAAATTTTT
*
44951629 AATTATTTAAAATTTGA
1 AATTATTTAAAATATGA
*
44951646 AATTATTTAATATAT-A
1 AATTATTTAAAATATGA
44951662 AATTA
1 AATTA
44951667 AAAAACAATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
AATTATTTAAAATATGA
Found at i:44951913 original size:42 final size:44
Alignment explanation
Indices: 44951826--44951928 Score: 113
Period size: 42 Copynumber: 2.4 Consensus size: 44
44951816 CTTATACACA
** *
44951826 CCTAAACCCTAAACCCTATAACTCATAAACCCTAACTATTGACC
1 CCTAAACCCTAAACCCTATAAAACATAAACCCTAAATATTGACC
* * *
44951870 CCTAATCCCTAAA-CC-ATAAAACATAAACCCTAAATTTTTACC
1 CCTAAACCCTAAACCCTATAAAACATAAACCCTAAATATTGACC
*
44951912 CCTTAACCTCT-AACCCT
1 CCTAAACC-CTAAACCCT
44951929 TACCTCCTAT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
42 30 0.62
43 6 0.12
44 12 0.25
ACGTcount: A:0.38, C:0.36, G:0.01, T:0.25
Consensus pattern (44 bp):
CCTAAACCCTAAACCCTATAAAACATAAACCCTAAATATTGACC
Found at i:44952236 original size:15 final size:15
Alignment explanation
Indices: 44952213--44952247 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
44952203 ATACCCATGG
* *
44952213 CCATTAAACCTTAAA
1 CCATAAAACCCTAAA
44952228 CCATAAAACCCTAAA
1 CCATAAAACCCTAAA
44952243 CCATA
1 CCATA
44952248 GACCTTATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (15 bp):
CCATAAAACCCTAAA
Found at i:44952473 original size:39 final size:39
Alignment explanation
Indices: 44952394--44952492 Score: 128
Period size: 38 Copynumber: 2.5 Consensus size: 39
44952384 TTTTTGGGGG
*
44952394 TTTAAGGTTTTAGGGGTTATAGTTTAGTATTTAGGATTT
1 TTTAAGGTTTTAGGGGTTATAGATTAGTATTTAGGATTT
* *
44952433 TTTAAGG-TTTAGGGGTTATAGATTAGTGTTTATGATTT
1 TTTAAGGTTTTAGGGGTTATAGATTAGTATTTAGGATTT
** *
44952471 TTTGGGGGTTTTAGGAGTTATA
1 TTT-AAGGTTTTAGGGGTTATA
44952493 TGACTTTTAG
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
38 31 0.60
39 9 0.17
40 12 0.23
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.49
Consensus pattern (39 bp):
TTTAAGGTTTTAGGGGTTATAGATTAGTATTTAGGATTT
Found at i:44952577 original size:66 final size:64
Alignment explanation
Indices: 44952497--44952621 Score: 205
Period size: 66 Copynumber: 1.9 Consensus size: 64
44952487 GTTATATGAC
**
44952497 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTTTTCTGGTTTTTAGCGGCGTTTATTGCTCTAG
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCT-GTTTTTAGCGGCGTTT-TTGCTCTAG
44952562 T
64 T
*
44952563 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGTTTTTAGCTGCGTTTTTGCT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGTTTTTAGCGGCGTTTTTGCT
44952622 AAAACGCCGC
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 5 0.09
65 15 0.27
66 36 0.64
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.42
Consensus pattern (64 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGTTTTTAGCGGCGTTTTTGCTCTAGT
Found at i:44952609 original size:40 final size:41
Alignment explanation
Indices: 44952551--44952633 Score: 123
Period size: 40 Copynumber: 2.0 Consensus size: 41
44952541 TAGCGGCGTT
44952551 TATTGCTCTAGTTTTTAGCGGCGTTTTACCAAAAACGCCGC
1 TATTGCTCTAGTTTTTAGCGGCGTTTTACCAAAAACGCCGC
* ** *
44952592 TATTGCTCT-GTTTTTAGCTGCGTTTTTGCTAAAACGCCGC
1 TATTGCTCTAGTTTTTAGCGGCGTTTTACCAAAAACGCCGC
44952632 TA
1 TA
44952634 AAGCCCTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
40 29 0.76
41 9 0.24
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (41 bp):
TATTGCTCTAGTTTTTAGCGGCGTTTTACCAAAAACGCCGC
Found at i:44954251 original size:35 final size:35
Alignment explanation
Indices: 44954175--44954291 Score: 162
Period size: 35 Copynumber: 3.3 Consensus size: 35
44954165 AGTCCAACTA
* *
44954175 AAACACACCAGATGCTCATAAGAGCCAATCCAAACG
1 AAACACACCA-ATGCTCATAAGAGCTAATCCAACCG
* **
44954211 AAACACACCAATACTCATAAGAGCTAATTTAACCG
1 AAACACACCAATGCTCATAAGAGCTAATCCAACCG
* *
44954246 GAACACACCAATGCTCATAAGAGCTAGTCCAACCG
1 AAACACACCAATGCTCATAAGAGCTAATCCAACCG
44954281 AAACACACCAA
1 AAACACACCAA
44954292 ACAGAGAGTA
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
35 60 0.86
36 10 0.14
ACGTcount: A:0.44, C:0.30, G:0.12, T:0.14
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAGAGCTAATCCAACCG
Found at i:44956706 original size:26 final size:30
Alignment explanation
Indices: 44956649--44956709 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 30
44956639 GCTATAAATT
44956649 TTGGGTTTCAAAATTATATTTTGGAAAGAA
1 TTGGGTTTCAAAATTATATTTTGGAAAGAA
* *
44956679 TTGGTTTTC-AAA-TAT-TTTTGGATA-AA
1 TTGGGTTTCAAAATTATATTTTGGAAAGAA
44956705 TTGGG
1 TTGGG
44956710 AAGTATGTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
26 6 0.21
27 8 0.29
28 3 0.11
29 3 0.11
30 8 0.29
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.44
Consensus pattern (30 bp):
TTGGGTTTCAAAATTATATTTTGGAAAGAA
Found at i:44959415 original size:13 final size:13
Alignment explanation
Indices: 44959397--44959421 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44959387 TGTATATATA
44959397 AAAAAGGAAAAAT
1 AAAAAGGAAAAAT
44959410 AAAAAGGAAAAA
1 AAAAAGGAAAAA
44959422 GAAATAAAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (13 bp):
AAAAAGGAAAAAT
Found at i:44959503 original size:21 final size:21
Alignment explanation
Indices: 44959477--44959518 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
44959467 GCAGGGGAAG
*
44959477 GAAAGAAAGAAAAAGAGAAAA
1 GAAAGAAAAAAAAAGAGAAAA
*
44959498 GAAAGAAAAAAAAAGGGAAAA
1 GAAAGAAAAAAAAAGAGAAAA
44959519 TCAAATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (21 bp):
GAAAGAAAAAAAAAGAGAAAA
Found at i:44961499 original size:46 final size:46
Alignment explanation
Indices: 44961447--44961720 Score: 406
Period size: 46 Copynumber: 6.0 Consensus size: 46
44961437 AGTGTGCTCT
44961447 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
44961493 CTGATATGAAATGTGTAAGACCATGGTTAAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
44961539 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
44961585 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ***
44961631 GTGACATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
44961677 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
44961721 TCATGTCAAA
Statistics
Matches: 212, Mismatches: 15, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 211 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:44969101 original size:18 final size:18
Alignment explanation
Indices: 44969078--44969113 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
44969068 TAACATATAA
44969078 AAGTATATAATACATACC
1 AAGTATATAATACATACC
44969096 AAGTATATAATACATACC
1 AAGTATATAATACATACC
44969114 TGACCAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (18 bp):
AAGTATATAATACATACC
Found at i:44969307 original size:39 final size:39
Alignment explanation
Indices: 44969246--44969469 Score: 315
Period size: 39 Copynumber: 5.7 Consensus size: 39
44969236 AAAAAGCATG
* * *
44969246 CGGGACTTTAAGCCCGGATATAATACCAGCATAAA-GCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACAAATGCCTT
* * *
44969286 CAGGACTTTAGCCCGGATATAATACCAGCATAAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACAAATGCCTT
*
44969326 CGGGACTTAGCCCGGATATAACAACAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
*
44969365 CGGGACTTAGCTCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
* *
44969404 CGGGACTTAGCTCGAATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
*
44969443 CGGGACTTAGCCCGGATATAATACCAG
1 CGGGACTTAGCCCGGATATAACACCAG
44969470 TATAAAGCCT
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 154 0.90
40 17 0.10
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
Found at i:44974746 original size:18 final size:18
Alignment explanation
Indices: 44974723--44974758 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
44974713 TAACATATAA
*
44974723 AAGTATATGATACATACC
1 AAGTATATAATACATACC
44974741 AAGTATATAATACATACC
1 AAGTATATAATACATACC
44974759 TGACCAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (18 bp):
AAGTATATAATACATACC
Found at i:44975103 original size:78 final size:78
Alignment explanation
Indices: 44974891--44975107 Score: 303
Period size: 78 Copynumber: 2.8 Consensus size: 78
44974881 AAAAAGCATG
* * *
44974891 CGGGACTTTAAGCCCGGATATGATACCAGCATAAAGCCTGCGGGACTTTAGCCCGGATATAATAC
1 CGGGAC-TT-AGCCCGGATATAATACCAGCATAAAGCCTGCGGGACCTTAGCCCGGATATAACAC
*
44974956 CAGCATAAATGCCTT
64 CAGCACAAATGCCTT
* * *
44974971 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAACACC
1 CGGGACTTAGCCCGGATATAATACCAGCATAAA-GCCTGCGGGACCTTAGCCCGGATATAACACC
44975035 AGCACAAATGCCTT
65 AGCACAAATGCCTT
* *
44975049 CGGGACTTAGCCCGGATATAATACCAGCATAAAGCCTGC-GGACCTCATGTCCGGATATA
1 CGGGACTTAGCCCGGATATAATACCAGCATAAAGCCTGCGGGACCTTA-GCCCGGATATA
44975108 TTTCTAGTCT
Statistics
Matches: 122, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
76 3 0.02
77 8 0.07
78 94 0.77
79 11 0.09
80 6 0.05
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (78 bp):
CGGGACTTAGCCCGGATATAATACCAGCATAAAGCCTGCGGGACCTTAGCCCGGATATAACACCA
GCACAAATGCCTT
Found at i:44975107 original size:39 final size:39
Alignment explanation
Indices: 44974891--44975085 Score: 295
Period size: 39 Copynumber: 5.0 Consensus size: 39
44974881 AAAAAGCATG
* *
44974891 CGGGACTTTAAGCCCGGATATGATACCAGCATAAA-GCCTG
1 CGGGAC-TT-AGCCCGGATATAATACCAGCATAAATGCCTT
44974931 CGGGACTTTAGCCCGGATATAATACCAGCATAAATGCCTT
1 CGGGAC-TTAGCCCGGATATAATACCAGCATAAATGCCTT
* *
44974971 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
* *
44975010 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
44975049 CGGGACTTAGCCCGGATATAATACCAGCATAAA-GCCT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCT
44975086 GCGGACCTCA
Statistics
Matches: 148, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
38 4 0.03
39 125 0.84
40 19 0.13
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
Found at i:44975107 original size:117 final size:119
Alignment explanation
Indices: 44974891--44975107 Score: 309
Period size: 117 Copynumber: 1.8 Consensus size: 119
44974881 AAAAAGCATG
* * *
44974891 CGGGACTTTAAGCCCGGATATGATACCAGCATAAAGCCTGCGGGACTTTAGCCCGGATATAATAC
1 CGGGACTTTAAGCCCGGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAATAC
* *
44974956 CAGCATAAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
66 CAGCATAAATGCCTGCGGGACTCAGCCCGGATATAACACCAGCACAAATGCCTT
*
44975010 CGGGAC-TT-AGCCCGGATATAACACCAGCACAAATGCCTTCGGGAC-TTAGCCCGGATATAATA
1 CGGGACTTTAAGCCCGGATATAACACCAGCACAAA-GCCTGCGGGACTTTAGCCCGGATATAATA
*
44975072 CCAGCATAAA-GCCTGC-GGACCTCATGTCCGGATATA
65 CCAGCATAAATGCCTGCGGGA-CTCA-GCCCGGATATA
44975108 TTTCTAGTCT
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
115 3 0.03
116 8 0.09
117 59 0.67
118 12 0.14
119 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (119 bp):
CGGGACTTTAAGCCCGGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAATAC
CAGCATAAATGCCTGCGGGACTCAGCCCGGATATAACACCAGCACAAATGCCTT
Found at i:44977203 original size:40 final size:39
Alignment explanation
Indices: 44977156--44977299 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 39
44977146 CTCGCACAAG
* * *
44977156 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATAT-GTCGCTAGCACAAAT
44977196 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATAT-GTCGCTAGCACAAAT
* * * *
44977236 GCCTTC-GGATCTTAGTCCGGATGTATCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATGTCGC-TAGCACAAAT
44977276 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
44977300 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 7 0.08
40 81 0.89
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (39 bp):
GCCTTCGGGACTTAGCCCGGATATGTCGCTAGCACAAAT
Found at i:44980761 original size:40 final size:40
Alignment explanation
Indices: 44980714--44980858 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
44980704 CTCGCACAAG
* * * *
44980714 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
44980754 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
44980794 GCCTTC-GGATCTTAGTCCGGATGTAATCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
44980835 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
44980859 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:44980841 original size:41 final size:40
Alignment explanation
Indices: 44980678--44980858 Score: 188
Period size: 40 Copynumber: 4.5 Consensus size: 40
44980668 AATCAAGCAT
** * * * *
44980678 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
* ** * *
44980716 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
*
44980756 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
* * *
44980796 CTTC-GGATCTTAGTCCGGATGTAATCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAATCGC-TAGCACAAATGC
44980837 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
44980859 CATTCGAGTA
Statistics
Matches: 120, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 11 0.09
39 18 0.15
40 61 0.51
41 27 0.22
42 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
Found at i:44982150 original size:28 final size:29
Alignment explanation
Indices: 44982083--44982185 Score: 120
Period size: 28 Copynumber: 3.5 Consensus size: 29
44982073 ATAGTGAATC
44982083 CGCACACTTAGTGCTATATATGTATTC-AACT
1 CGCACACTTAGTGCTATATA---ATTCAAACT
44982114 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
44982142 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
44982172 CGCACACTTAGTGC
1 CGCACACTTAGTGC
44982186 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
27 2 0.03
28 24 0.37
30 19 0.29
31 20 0.31
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:44990052 original size:28 final size:29
Alignment explanation
Indices: 44989985--44990085 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
44989975 ATAGTGAATC
* *
44989985 CGCACACTTAGTGCTATATATTTTC-AGCT
1 CGCACACTTAGTGCTATAGA-TTTCAAACT
*
44990014 CGCACACTTAGTGCTATAGA-ATCAAACT
1 CGCACACTTAGTGCTATAGATTTCAAACT
* * *
44990042 CGCACACTTAGTGCTGTACGATTTTAAACC
1 CGCACACTTAGTGCTATA-GATTTCAAACT
44990072 CGCACACTTAGTGC
1 CGCACACTTAGTGC
44990086 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 20 0.32
29 21 0.34
30 19 0.31
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATAGATTTCAAACT
Found at i:44990078 original size:30 final size:29
Alignment explanation
Indices: 44989984--44990085 Score: 116
Period size: 28 Copynumber: 3.5 Consensus size: 29
44989974 TATAGTGAAT
* * *
44989984 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAGATTTTAAAC
* * *
44990013 TCGCACACTTAGTGCTATAGA-ATCAAAC
1 CCGCACACTTAGTGCTATAGATTTTAAAC
* *
44990041 TCGCACACTTAGTGCTGTACGATTTTAAAC
1 CCGCACACTTAGTGCTATA-GATTTTAAAC
44990071 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
44990086 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
28 21 0.34
29 21 0.34
30 19 0.31
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAGATTTTAAAC
Found at i:44993816 original size:106 final size:107
Alignment explanation
Indices: 44993691--44993906 Score: 398
Period size: 106 Copynumber: 2.0 Consensus size: 107
44993681 GCATGCTCAT
*
44993691 TTTTATTTTGAGAGTAAACCAAAATATCATCTATAAATACCATCACAAACCTATCCAAATACGGG
1 TTTTATTTCGAGAGTAAACCAAAATATCATCTATAAATACCATCACAAACCTATCCAAATACGGG
44993756 CTGAAAATTTTGTTCATCAAATCCATAAACACTGCAGGTG-A
66 CTGAAAATTTTGTTCATCAAATCCATAAACACTGCAGGTGCA
*
44993797 TTTTATTTCGAGAGTAAACCAAAATATCATCTATAAATACCATCACAAACCTGTCCAAATACGGG
1 TTTTATTTCGAGAGTAAACCAAAATATCATCTATAAATACCATCACAAACCTATCCAAATACGGG
*
44993862 CTGAAAATTTTGTTCATCAAATCCATAAACACTGTAGGTGCA
66 CTGAAAATTTTGTTCATCAAATCCATAAACACTGCAGGTGCA
44993904 TTT
1 TTT
44993907 GTCAATTCGA
Statistics
Matches: 106, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
106 102 0.96
107 4 0.04
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (107 bp):
TTTTATTTCGAGAGTAAACCAAAATATCATCTATAAATACCATCACAAACCTATCCAAATACGGG
CTGAAAATTTTGTTCATCAAATCCATAAACACTGCAGGTGCA
Found at i:44998680 original size:45 final size:45
Alignment explanation
Indices: 44998616--44998703 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
44998606 AAACATGTGC
44998616 CACATACATCATGAACTCAGACCACAACTCAATGAGTTTAGATGT
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTTAGATGT
*
44998661 CACATATATCATGAACTCAGACCACAACTCAATGAGTTTAGAT
1 CACATACATCATGAACTCAGACCACAACTCAATGAGTTTAGAT
44998704 CACATAGTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (45 bp):
CACATACATCATGAACTCAGACCACAACTCAATGAGTTTAGATGT
Done.