Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 148 of 425
Found at i:44998695 original size:21 final size:21
Alignment explanation
Indices: 44998626--44998695 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
44998616 CACATACATC
44998626 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
** * * *
44998647 ATGAGTTTAGATGTCACATATATC-
1 ATGAACTCAGA--CCACA-A-CTCA
44998671 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCACAACTCA
44998692 ATGA
1 ATGA
44998696 GTTTAGATCA
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
20 2 0.06
21 13 0.38
22 4 0.12
23 4 0.12
24 9 0.26
25 2 0.06
ACGTcount: A:0.40, C:0.24, G:0.13, T:0.23
Consensus pattern (21 bp):
ATGAACTCAGACCACAACTCA
Found at i:44998707 original size:21 final size:21
Alignment explanation
Indices: 44998638--44998707 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
44998628 GAACTCAGAC
44998638 CACAACTCAATGAGTTTAGATGT
1 CACAACTCAATGAGTTTAGA--T
* ** * *
44998661 CACATATATC-ATGAACTCAGAC
1 CACA-A-CTCAATGAGTTTAGAT
44998683 CACAACTCAATGAGTTTAGAT
1 CACAACTCAATGAGTTTAGAT
44998704 CACA
1 CACA
44998708 TAGTTTCTAG
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
20 2 0.06
21 13 0.38
22 4 0.12
23 4 0.12
24 9 0.26
25 2 0.06
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (21 bp):
CACAACTCAATGAGTTTAGAT
Found at i:45000852 original size:37 final size:37
Alignment explanation
Indices: 45000811--45000881 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
45000801 CCTCAGACGA
** *
45000811 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACCAAGTCATCGGGTCTTACCCGGACAT
* *
45000848 AATCTCCACACCTAGTCATGGGGTCTTACCCGGA
1 AATCTCCACACCAAGTCATCGGGTCTTACCCGGA
45000882 ATATATTTCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
AATCTCCACACCAAGTCATCGGGTCTTACCCGGACAT
Found at i:45001145 original size:100 final size:96
Alignment explanation
Indices: 45001027--45001212 Score: 293
Period size: 100 Copynumber: 1.9 Consensus size: 96
45001017 GCACATCGCC
* *
45001027 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATATATATATTTCACA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATC---T-CATACATATTTCACA
45001092 TT-GACCATTCGGCTTTACCACATATGCATATCTCA
62 TTAG-CCATTCGGCTTTACCACATATGCATATCTCA
*
45001127 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
45001192 CCATTCGGCTTTACCACATAT
66 CCATTCGGCTTTACCACATAT
45001213 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
96 36 0.44
97 2 0.02
100 44 0.54
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.37
Consensus pattern (96 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATGCATATCTCA
Found at i:45001153 original size:48 final size:48
Alignment explanation
Indices: 45001027--45001213 Score: 286
Period size: 48 Copynumber: 3.8 Consensus size: 48
45001017 GCACATCGCC
* *
45001027 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC---T-CA
* *
45001079 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
45001127 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
45001175 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
45001214 TGCATGTTCA
Statistics
Matches: 127, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
48 84 0.66
49 2 0.02
51 1 0.01
52 40 0.31
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:45001262 original size:47 final size:47
Alignment explanation
Indices: 45001183--45001517 Score: 508
Period size: 47 Copynumber: 7.1 Consensus size: 47
45001173 CATACATATT
* * *
45001183 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
45001230 TCACATTGGCCATTCGGCCTTATCTCACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
45001277 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
45001324 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
45001371 CCACATTGGCCATTCGGCCTTATCACAGATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
45001418 TCACATTGGCCATTCGGCCTTATCACATAAATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
45001465 TAACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
45001512 TCACAT
1 TCACAT
45001518 AAAATCCTAA
Statistics
Matches: 261, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 261 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:45005372 original size:40 final size:40
Alignment explanation
Indices: 45005340--45005811 Score: 674
Period size: 40 Copynumber: 11.8 Consensus size: 40
45005330 CCAGCATGAT
* * * *
45005340 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* ** * *
45005380 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
45005420 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
45005460 TACTCTTCGGGACTTAGTCCGGATCCATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
45005500 TGCTCTTTGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
45005540 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
45005580 TGCTCTTCGGGACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
45005620 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
45005660 TGCTCTTCAGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
45005700 TGCTCTTCAGGACTTAGTCCAGATACATAACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
45005740 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
45005780 TGCTCTTCGAGACTTAGCCCAGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
45005812 CTCAATTCTC
Statistics
Matches: 389, Mismatches: 43, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 389 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:45007122 original size:37 final size:38
Alignment explanation
Indices: 45007081--45007156 Score: 100
Period size: 37 Copynumber: 2.0 Consensus size: 38
45007071 CCTCAGACGA
*
45007081 AATCTCCACACAAAGTTATCGGGTCTTACCCGG-ATAT
1 AATCTCCACACAAAGTCATCGGGTCTTACCCGGAATAT
** * *
45007118 AATCTCCACACGTAGTCATGGGGTCTTACCTGGAATAT
1 AATCTCCACACAAAGTCATCGGGTCTTACCCGGAATAT
45007156 A
1 A
45007157 TTTCCAAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
37 28 0.85
38 5 0.15
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (38 bp):
AATCTCCACACAAAGTCATCGGGTCTTACCCGGAATAT
Found at i:45007421 original size:48 final size:48
Alignment explanation
Indices: 45007297--45007481 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
45007287 GCACATCGCC
* *
45007297 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-T-CA
* *
45007347 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
45007395 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
45007443 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
45007482 TGCATGTTCA
Statistics
Matches: 127, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
48 84 0.66
49 3 0.02
50 40 0.31
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:45007486 original size:98 final size:98
Alignment explanation
Indices: 45007297--45007480 Score: 311
Period size: 98 Copynumber: 1.9 Consensus size: 98
45007287 GCACATCGCC
* *
45007297 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTACATACATATTTCACATT
45007362 GACCATTCGGCTTTACCACATATGCATATCTCA
66 GACCATTCGGCTTTACCACATATGCATATCTCA
*
45007395 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-T-CATACATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTACATACATATTTCACATT
45007458 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCGGCTTTACCACATAT
45007481 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 36 0.44
97 1 0.01
98 44 0.54
ACGTcount: A:0.30, C:0.26, G:0.07, T:0.36
Consensus pattern (98 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTACATACATATTTCACATT
GACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:45007530 original size:47 final size:47
Alignment explanation
Indices: 45007451--45007832 Score: 602
Period size: 47 Copynumber: 8.1 Consensus size: 47
45007441 CATACATATT
* * *
45007451 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
45007498 TCACATTGGCCATTCGGCCTTATCTCACATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
45007545 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
45007592 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
45007639 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
45007686 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
45007733 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
45007780 TAACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
45007827 TCACAT
1 TCACAT
45007833 AAAATCCTAA
Statistics
Matches: 308, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 308 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:45007712 original size:22 final size:22
Alignment explanation
Indices: 45007685--45007760 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
45007675 GCTCACATTC
45007685 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
45007707 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
45007731 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
45007754 ATCACAT
1 ATCACAT
45007761 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:45016002 original size:31 final size:32
Alignment explanation
Indices: 45015967--45016032 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 32
45015957 TTTTATAGCT
* *
45015967 AAATTTGGCCATCAATCTTTT-AAAAAGAGTC
1 AAATTTGACCATCAACCTTTTGAAAAAGAGTC
**
45015998 AAATTTGACCATTGACCTTTTGAAAAAGAGTC
1 AAATTTGACCATCAACCTTTTGAAAAAGAGTC
45016030 AAA
1 AAA
45016033 ATGATAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 17 0.57
32 13 0.43
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (32 bp):
AAATTTGACCATCAACCTTTTGAAAAAGAGTC
Found at i:45016882 original size:23 final size:23
Alignment explanation
Indices: 45016856--45016904 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
45016846 ATTATTTGTA
45016856 AATATGTT-TAAACATATTCATTT
1 AATAT-TTGTAAACATATTCATTT
* *
45016879 AATATTTGTAAATATATTTATTT
1 AATATTTGTAAACATATTCATTT
45016902 AAT
1 AAT
45016905 TTCATGAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 2 0.09
23 21 0.91
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (23 bp):
AATATTTGTAAACATATTCATTT
Found at i:45017194 original size:15 final size:17
Alignment explanation
Indices: 45017173--45017208 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
45017163 TTTATAATAC
45017173 TTTT-TATATTATGTAA
1 TTTTATATATTATGTAA
45017189 TTTTATATATTATGTAA
1 TTTTATATATTATGTAA
45017206 TTT
1 TTT
45017209 ATAACACATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (17 bp):
TTTTATATATTATGTAA
Found at i:45033518 original size:30 final size:30
Alignment explanation
Indices: 45033484--45033544 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
45033474 TCCTTAACTC
45033484 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
45033514 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
45033544 A
1 A
45033545 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:45041142 original size:46 final size:46
Alignment explanation
Indices: 45041092--45041267 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
45041082 TGGTTGAGCA
45041092 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45041138 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
45041183 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45041231 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45041268 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45041248 original size:93 final size:93
Alignment explanation
Indices: 45041089--45041260 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
45041079 GGATGGTTGA
* *
45041089 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45041154 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
45041182 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45041247 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
45041261 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45048700 original size:46 final size:46
Alignment explanation
Indices: 45048650--45048825 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
45048640 TGGTTGAGCA
45048650 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45048696 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
45048741 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45048789 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45048826 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45048806 original size:93 final size:93
Alignment explanation
Indices: 45048647--45048818 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
45048637 GGATGGTTGA
* *
45048647 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45048712 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
45048740 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45048805 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
45048819 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45056360 original size:26 final size:26
Alignment explanation
Indices: 45056253--45056363 Score: 123
Period size: 27 Copynumber: 4.2 Consensus size: 26
45056243 AGGAAGCATC
* * **
45056253 CTGGTGGTTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
45056280 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
45056307 CTAGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* **
45056334 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
45056360 CTGG
1 CTGG
45056364 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 16 0.22
27 55 0.75
28 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:45058695 original size:40 final size:40
Alignment explanation
Indices: 45058636--45058822 Score: 180
Period size: 40 Copynumber: 4.7 Consensus size: 40
45058626 CATTGGAATG
* * * *
45058636 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
45058676 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
45058716 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
45058756 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
45058796 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
45058823 CGAGTGAGTC
Statistics
Matches: 122, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.94
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:45058738 original size:80 final size:80
Alignment explanation
Indices: 45058636--45058789 Score: 218
Period size: 80 Copynumber: 1.9 Consensus size: 80
45058626 CATTGGAATG
* * ** *
45058636 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
45058701 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
45058716 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
45058781 ATCGTGCGA
66 ATCGTGCGA
45058790 ATCACTATAA
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
80 64 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:45058804 original size:80 final size:80
Alignment explanation
Indices: 45058640--45058822 Score: 213
Period size: 80 Copynumber: 2.3 Consensus size: 80
45058630 GGAATGATAT
* ** * *
45058640 CCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
* *** *
45058705 TGCGAGTTGTTATAT
66 TGCGAATCACTATAA
* * * * *
45058720 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
45058785 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* *
45058800 CCGGGCTAGGTCCCGAAGACAAT
1 CCGGGCTAAGTCCCGAAGGCAAT
45058823 CGAGTGAGTC
Statistics
Matches: 84, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
80 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.21
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAATCACTATAA
Found at i:45061007 original size:24 final size:24
Alignment explanation
Indices: 45060980--45061038 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
45060970 ATGTTCAAGT
45060980 GAGCTATATTACGAAGCTCATAAA
1 GAGCTATATTACGAAGCTCATAAA
* * *
45061004 GAGCCTATATCAGGATGCTCATAAA
1 GAG-CTATATTACGAAGCTCATAAA
* *
45061029 AAGCTGTATT
1 GAGCTATATT
45061039 TGTGTCTGCA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
24 8 0.29
25 20 0.71
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (24 bp):
GAGCTATATTACGAAGCTCATAAA
Found at i:45070386 original size:21 final size:21
Alignment explanation
Indices: 45070354--45070403 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
45070344 ATATAAATAA
*
45070354 ATTTAACA-TCAATTTAATCC
1 ATTTCACACTCAATTTAATCC
*
45070374 ATTTCACACTCAATTTAATTC
1 ATTTCACACTCAATTTAATCC
*
45070395 AATTCACAC
1 ATTTCACAC
45070404 CCTAAGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (21 bp):
ATTTCACACTCAATTTAATCC
Found at i:45071315 original size:39 final size:39
Alignment explanation
Indices: 45071261--45071338 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
45071251 CACTGAAAAC
45071261 GGGCTATTACATTTTCCAATGCAAATTCAAACAATTAAT
1 GGGCTATTACATTTTCCAATGCAAATTCAAACAATTAAT
45071300 GGGCTATTACATTTTCCAATGCAAATTCAAACAATTAAT
1 GGGCTATTACATTTTCCAATGCAAATTCAAACAATTAAT
45071339 CAATCTTCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.33
Consensus pattern (39 bp):
GGGCTATTACATTTTCCAATGCAAATTCAAACAATTAAT
Found at i:45072847 original size:25 final size:25
Alignment explanation
Indices: 45072819--45072877 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
45072809 CAGCTCGTAT
*
45072819 GAGCTTACCGTTATTCAGCTCAGAG
1 GAGCTTACCATTATTCAGCTCAGAG
* *
45072844 GAGCTTACTATTATTCAGCTCGGAG
1 GAGCTTACCATTATTCAGCTCAGAG
*
45072869 GAACTTACC
1 GAGCTTACC
45072878 TTTTACAGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (25 bp):
GAGCTTACCATTATTCAGCTCAGAG
Found at i:45074880 original size:22 final size:22
Alignment explanation
Indices: 45074854--45074897 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
45074844 AAAATAAATC
*
45074854 AAAATTAATTAAAATTTAATAT
1 AAAATTAATTAAAATTAAATAT
45074876 AAAATTAATTAAAATTAAATAT
1 AAAATTAATTAAAATTAAATAT
45074898 GTTAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATTAAAATTAAATAT
Found at i:45074883 original size:11 final size:10
Alignment explanation
Indices: 45074844--45074893 Score: 64
Period size: 10 Copynumber: 4.8 Consensus size: 10
45074834 AAATCTGTCG
* *
45074844 AAAATAAATC
1 AAAATTAATT
45074854 AAAATTAATT
1 AAAATTAATT
45074864 AAAATTTAATAT
1 AAAA-TTAAT-T
45074876 AAAATTAATT
1 AAAATTAATT
45074886 AAAATTAA
1 AAAATTAA
45074894 ATATGTTAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
10 21 0.58
11 10 0.28
12 5 0.14
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (10 bp):
AAAATTAATT
Found at i:45080020 original size:16 final size:16
Alignment explanation
Indices: 45079999--45080029 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45079989 AATTAATTTA
*
45079999 AATTAATTAATTTTCC
1 AATTAAATAATTTTCC
45080015 AATTAAATAATTTTC
1 AATTAAATAATTTTC
45080030 TCAACCCAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Found at i:45090014 original size:30 final size:30
Alignment explanation
Indices: 45089978--45090078 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
45089968 GACAAGATTG
* * *
45089978 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
45090008 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
45090036 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
45090065 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45090079 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:45090090 original size:29 final size:28
Alignment explanation
Indices: 45090007--45090082 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
45089997 AAAATTGTAC
* *
45090007 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
45090035 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
45090064 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
45090083 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:45093517 original size:17 final size:18
Alignment explanation
Indices: 45093491--45093524 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
45093481 TTTTTGTTTA
45093491 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
45093508 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
45093525 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:45095761 original size:79 final size:81
Alignment explanation
Indices: 45095670--45095853 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
45095660 ACGACTCGCT
** * *
45095670 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGC-CGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
45095732 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
45095749 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
45095813 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
45095829 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
45095854 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 20 0.22
79 52 0.58
80 18 0.20
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:45095853 original size:40 final size:39
Alignment explanation
Indices: 45095663--45095853 Score: 154
Period size: 39 Copynumber: 4.8 Consensus size: 39
45095653 GGACATAACG
* ** * *
45095663 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
45095703 ACTCGC-CGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
45095742 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
45095781 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
45095821 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
45095854 CATCATTCGA
Statistics
Matches: 120, Mismatches: 23, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
38 2 0.02
39 58 0.48
40 52 0.43
41 8 0.07
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:45102668 original size:46 final size:46
Alignment explanation
Indices: 45102618--45102793 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
45102608 TGGTTGAGCA
45102618 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45102664 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
45102709 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
45102757 CCCGAGA-TCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45102794 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 30 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45102774 original size:93 final size:93
Alignment explanation
Indices: 45102615--45102786 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
45102605 GGATGGTTGA
* *
45102615 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45102680 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
45102708 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGA-TCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGA-ACTCGTTGAG
45102772 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
45102787 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
93 75 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45106484 original size:20 final size:20
Alignment explanation
Indices: 45106459--45106499 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
45106449 AGCATTGTAA
* *
45106459 TGAGGCACTGAAGTGCAAAC
1 TGAGGCACTAAAGTGAAAAC
45106479 TGAGGCACTAAAGTGAAAAC
1 TGAGGCACTAAAGTGAAAAC
45106499 T
1 T
45106500 CATACAAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (20 bp):
TGAGGCACTAAAGTGAAAAC
Found at i:45113831 original size:15 final size:15
Alignment explanation
Indices: 45113811--45113842 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
45113801 TTAACTACAT
45113811 TTTCACAATCTATAG
1 TTTCACAATCTATAG
*
45113826 TTTCACAGTCTATAG
1 TTTCACAATCTATAG
45113841 TT
1 TT
45113843 CCAGTATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44
Consensus pattern (15 bp):
TTTCACAATCTATAG
Found at i:45114573 original size:21 final size:21
Alignment explanation
Indices: 45114534--45114573 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
45114524 GTCTTATGCC
*
45114534 ACAGTCCATAAAAATAATAAG
1 ACAGTCCATAAAAACAATAAG
45114555 ACAGTCC-TAAAATACAATA
1 ACAGTCCATAAAA-ACAATA
45114574 TAATAAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.55, C:0.17, G:0.07, T:0.20
Consensus pattern (21 bp):
ACAGTCCATAAAAACAATAAG
Found at i:45129900 original size:8 final size:8
Alignment explanation
Indices: 45129883--45129919 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
45129873 TACCAAAGTG
*
45129883 GGCCCGTT
1 GGCCCATT
45129891 GGCCCATT
1 GGCCCATT
45129899 GGCCCATT
1 GGCCCATT
45129907 GGCCCATT
1 GGCCCATT
45129915 GGCCC
1 GGCCC
45129920 GTTTTCGGCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.08, C:0.41, G:0.30, T:0.22
Consensus pattern (8 bp):
GGCCCATT
Found at i:45136946 original size:27 final size:26
Alignment explanation
Indices: 45136898--45136957 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
45136888 GCGAGGCTGC
*
45136898 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
45136925 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
45136951 CAAATAT
1 CAGATAT
45136958 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:45137044 original size:27 final size:26
Alignment explanation
Indices: 45136996--45137047 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
45136986 GCGAGGCTGC
*
45136996 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
45137022 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
45137048 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:45142548 original size:45 final size:45
Alignment explanation
Indices: 45142469--45142554 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
45142459 TATACGCCTA
** *
45142469 AAATGAGTAAGACCATAGCTGAAAGATATTATGGCTTCATGATAT
1 AAATGAGTAAGACCATAGCTGAAAGATACCATGGCATCATGATAT
* * * *
45142514 AAATGTGTAAGACCCTGGCTGAAAGATGCCATGGCATCATG
1 AAATGAGTAAGACCATAGCTGAAAGATACCATGGCATCATG
45142555 GTAAATATAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGATACCATGGCATCATGATAT
Found at i:45145579 original size:12 final size:12
Alignment explanation
Indices: 45145562--45145586 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45145552 TCTGAAGTCG
45145562 TAATATTATTTT
1 TAATATTATTTT
45145574 TAATATTATTTT
1 TAATATTATTTT
45145586 T
1 T
45145587 GGTGTTTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TAATATTATTTT
Found at i:45146201 original size:28 final size:29
Alignment explanation
Indices: 45146170--45146229 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 29
45146160 AAAGTGATTT
*
45146170 TTGAAAAAAATGTCAATT-AGGGATTAAA
1 TTGAAAAAAATGTAAATTGAGGGATTAAA
* *
45146198 TTGAAAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAAAAAAATGTAAATTGAGGGATTAAA
45146227 TTG
1 TTG
45146230 TGAAATAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 16 0.57
29 12 0.43
ACGTcount: A:0.45, C:0.02, G:0.23, T:0.30
Consensus pattern (29 bp):
TTGAAAAAAATGTAAATTGAGGGATTAAA
Found at i:45151648 original size:29 final size:29
Alignment explanation
Indices: 45151615--45151775 Score: 182
Period size: 29 Copynumber: 5.6 Consensus size: 29
45151605 GTGACGAGAT
45151615 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
45151644 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
45151673 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
45151702 CGGCACTGGGTGTGCGAGCTCGAAGGCTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
45151731 TGGCACTATGTGTGCGGGCT-TAAATCGA-A
1 TGGCACTAAGTGTGCGTGCTGGAAAT--ATA
45151760 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45151776 AAATCGAGTA
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
28 2 0.02
29 109 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:45153822 original size:29 final size:29
Alignment explanation
Indices: 45153780--45153853 Score: 75
Period size: 29 Copynumber: 2.5 Consensus size: 29
45153770 TAGAACAAGG
45153780 TATGGACATT-ATGAAT-TCTTAGTTATGTCTT
1 TATGGAC-TTAATGAATCTCTTA--TA-GTCTT
45153811 T-TGGAC-TAATGAATGCTCTTATAGTCTT
1 TATGGACTTAATGAAT-CTCTTATAGTCTT
45153839 TATGGACTTAATGAA
1 TATGGACTTAATGAA
45153854 CCCTATTTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
28 7 0.18
29 13 0.34
30 12 0.32
31 6 0.16
ACGTcount: A:0.28, C:0.11, G:0.18, T:0.43
Consensus pattern (29 bp):
TATGGACTTAATGAATCTCTTATAGTCTT
Found at i:45158548 original size:30 final size:30
Alignment explanation
Indices: 45158512--45158669 Score: 195
Period size: 30 Copynumber: 5.5 Consensus size: 30
45158502 GACAAGATTG
* * * * *
45158512 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
45158542 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
45158570 GCACTAAGTGTGCGAGCTG-AAA--ATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
45158597 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
45158627 GCACTAAGTGTGCAAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
45158656 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45158670 GATTCACTAT
Statistics
Matches: 115, Mismatches: 7, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
27 26 0.23
28 25 0.22
29 20 0.17
30 42 0.37
31 2 0.02
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:45158637 original size:57 final size:57
Alignment explanation
Indices: 45158541--45158669 Score: 192
Period size: 57 Copynumber: 2.3 Consensus size: 57
45158531 AAAATTGTAC
* *
45158541 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGCTG-AAA-ATAT
1 AGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGTGTGCAAGCTGAAAATATAT
45158596 AGCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCAAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG---ATTATATAGCACTAAGTGTGCAAGCTGAAAATATAT
45158655 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
45158670 GATTCACTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
54 2 0.03
55 17 0.25
57 26 0.39
58 3 0.04
59 19 0.28
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (57 bp):
AGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGTGTGCAAGCTGAAAATATAT
Found at i:45170396 original size:28 final size:29
Alignment explanation
Indices: 45170365--45170424 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
45170355 AAAGTGATTT
*
45170365 TTGACAAAAATGTCAATT-AGGGATTAAA
1 TTGACAAAAATGTAAATTGAGGGATTAAA
* * *
45170393 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGACAAAAATGTAAATTGAGGGATTAAA
45170422 TTG
1 TTG
45170425 TGAAATAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 15 0.56
29 12 0.44
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.30
Consensus pattern (29 bp):
TTGACAAAAATGTAAATTGAGGGATTAAA
Found at i:45170424 original size:29 final size:28
Alignment explanation
Indices: 45170365--45170429 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 28
45170355 AAAGTGATTT
* *
45170365 TTGACAAAAATGTCAATTAGGGATTAAA
1 TTGAGAAAAATGTAAATTAGGGATTAAA
* *
45170393 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAATGTAAATT-AGGGATTAAA
*
45170422 TTGTGAAA
1 TTGAGAAA
45170430 TAAATGAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
28 15 0.48
29 16 0.52
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.29
Consensus pattern (28 bp):
TTGAGAAAAATGTAAATTAGGGATTAAA
Found at i:45171000 original size:43 final size:43
Alignment explanation
Indices: 45170918--45171073 Score: 97
Period size: 43 Copynumber: 3.7 Consensus size: 43
45170908 TGTGATTACA
* * *
45170918 TGTAAGACCATTTCTGGGACATCGGCATTGTATTGCGATTAAG
1 TGTAAGACCATGTCTGGGACATCGGCATCGTAATGCGATTAAG
* * * **
45170961 TGTAAGATCATGTCTGGGACCTTGGCATCGTTAAT-CGATTTCG
1 TGTAAGACCATGTCTGGGACATCGGCATCG-TAATGCGATTAAG
* * * * * *
45171004 TATAAGACCCTTTCTAGGACAGT-GGCATCG-ATATGTGA-TAACA
1 TGTAAGACCATGTCTGGGACA-TCGGCATCGTA-ATGCGATTAA-G
* *
45171047 TGTAAGACCATATCTGGGATAT-GGCAT
1 TGTAAGACCATGTCTGGGACATCGGCAT
45171074 TGTATTGGCT
Statistics
Matches: 85, Mismatches: 23, Indels: 11
0.71 0.19 0.09
Matches are distributed among these distances:
41 1 0.01
42 9 0.11
43 71 0.84
44 4 0.05
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATCGGCATCGTAATGCGATTAAG
Found at i:45174447 original size:46 final size:46
Alignment explanation
Indices: 45174394--45174522 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
45174384 TATTTGGGCA
*
45174394 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
45174440 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
45174486 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45174523 GCGGGTTACA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:45181620 original size:13 final size:13
Alignment explanation
Indices: 45181602--45181634 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
45181592 ACCTTGTGTC
*
45181602 ACACACGATTGAG
1 ACACACGACTGAG
45181615 ACACACGACTGAG
1 ACACACGACTGAG
45181628 ACACACG
1 ACACACG
45181635 CCTGTGTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.39, C:0.30, G:0.21, T:0.09
Consensus pattern (13 bp):
ACACACGACTGAG
Found at i:45183583 original size:13 final size:13
Alignment explanation
Indices: 45183565--45183589 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45183555 CCAAGCACAC
45183565 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
45183578 GCCCGTGTCCTT
1 GCCCGTGTCCTT
45183590 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.24, T:0.36
Consensus pattern (13 bp):
GCCCGTGTCCTTT
Found at i:45184222 original size:21 final size:21
Alignment explanation
Indices: 45184196--45184238 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
45184186 ATCTCATGAA
45184196 ACATTCAAGCATGAAATGCAC
1 ACATTCAAGCATGAAATGCAC
*
45184217 ACATTCAAGCATGACATGCAC
1 ACATTCAAGCATGAAATGCAC
45184238 A
1 A
45184239 ATTAGTAGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.26, G:0.14, T:0.19
Consensus pattern (21 bp):
ACATTCAAGCATGAAATGCAC
Found at i:45185233 original size:15 final size:15
Alignment explanation
Indices: 45185213--45185243 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
45185203 AAGAACATGC
45185213 ATTTTTAAGTATATT
1 ATTTTTAAGTATATT
45185228 ATTTTTAAGTATATT
1 ATTTTTAAGTATATT
45185243 A
1 A
45185244 AGAGTTTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (15 bp):
ATTTTTAAGTATATT
Found at i:45190191 original size:40 final size:40
Alignment explanation
Indices: 45190147--45190234 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
45190137 TCGCTCGAAA
* * *
45190147 GCCTTCGGGACATAGCCCGG-TTATAATAGCTCGCACAAAT
1 GCCTTCGGGACATAACCCGGATT-TAAGAACTCGCACAAAT
* *
45190187 GCCTTCGGGACTTAACCCGGATTTAGGAACTCGCACAAAT
1 GCCTTCGGGACATAACCCGGATTTAAGAACTCGCACAAAT
45190227 GCCTTCGG
1 GCCTTCGG
45190235 ATCTTAGTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 40 0.95
41 2 0.05
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACATAACCCGGATTTAAGAACTCGCACAAAT
Found at i:45196715 original size:40 final size:40
Alignment explanation
Indices: 45196650--45196896 Score: 374
Period size: 40 Copynumber: 6.2 Consensus size: 40
45196640 TTCTTCGGAA
* ** *
45196650 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
45196689 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
45196729 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
45196769 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
45196809 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
45196849 TTAGCCCGGATATAATC-ACTAGCA-TAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
45196888 TTAGCCCGG
1 TTAGCCCGG
45196897 GTATCATTCA
Statistics
Matches: 193, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 25 0.13
40 167 0.87
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:45199603 original size:15 final size:15
Alignment explanation
Indices: 45199583--45199611 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
45199573 AGAACATGCA
45199583 TTTTAAGTATATTAT
1 TTTTAAGTATATTAT
45199598 TTTTAAGTATATTA
1 TTTTAAGTATATTA
45199612 AGAGTTTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (15 bp):
TTTTAAGTATATTAT
Found at i:45210259 original size:25 final size:25
Alignment explanation
Indices: 45210231--45210309 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
45210221 ACTCGGCCCT
45210231 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
45210256 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
45210278 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
45210303 ATCACAT
1 ATCACAT
45210310 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:45210355 original size:49 final size:49
Alignment explanation
Indices: 45210181--45210539 Score: 514
Period size: 49 Copynumber: 7.3 Consensus size: 49
45210171 CCCTTCGGGA
* * * * *
45210181 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45210228 CCTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45210275 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45210322 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45210371 CTTATCACATGTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----AT---A--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
45210429 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45210478 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45210527 CTTATCACATATA
1 CTTATCACATATA
45210540 CTATCATGTA
Statistics
Matches: 290, Mismatches: 9, Indels: 24
0.90 0.03 0.07
Matches are distributed among these distances:
46 1 0.00
47 92 0.32
49 145 0.50
51 1 0.00
53 2 0.01
54 2 0.01
56 1 0.00
58 46 0.16
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45210387 original size:31 final size:31
Alignment explanation
Indices: 45210344--45210438 Score: 105
Period size: 31 Copynumber: 3.2 Consensus size: 31
45210334 ATATACACTT
45210344 TCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATTCATCACATCGGCCATTAGGCCTTA
*
45210375 TCACATGT-ATCACAT--G-TATATA--CACTT-
1 TCACAT-TCATCACATCGGCCAT-TAGGC-CTTA
45210402 TCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATTCATCACATCGGCCATTAGGCCTTA
45210433 TCACAT
1 TCACAT
45210439 ATATATACAC
Statistics
Matches: 52, Mismatches: 2, Indels: 20
0.70 0.03 0.27
Matches are distributed among these distances:
26 1 0.02
27 14 0.27
28 5 0.10
29 6 0.12
30 5 0.10
31 20 0.38
32 1 0.02
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (31 bp):
TCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:45210404 original size:107 final size:98
Alignment explanation
Indices: 45210181--45210539 Score: 523
Period size: 107 Copynumber: 3.6 Consensus size: 98
45210171 CCCTTCGGGA
* * * * * *
45210181 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCAC--ATATAT
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
* *
45210242 ACACTTTCACATTCATCACATTGGCCATTCGGC
66 ACACTTTCACATTCATCACATCGGCCATTAGGC
45210275 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
45210338 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
66 ACACTTTCACATTCATCACATCGGCCATTAGG------C
45210377 ACATGTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 -C-T-TATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
45210442 TATACACTTTCACATTCATCACATCGGCCATTAGGC
63 TATACACTTTCACATTCATCACATCGGCCATTAGGC
45210478 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
45210540 CTATCATGTA
Statistics
Matches: 243, Mismatches: 8, Indels: 24
0.88 0.03 0.09
Matches are distributed among these distances:
93 1 0.00
94 47 0.19
96 36 0.15
98 60 0.25
99 1 0.00
100 1 0.00
101 1 0.00
102 1 0.00
103 1 0.00
104 1 0.00
105 7 0.03
107 86 0.35
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (98 bp):
CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
ACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45210413 original size:27 final size:27
Alignment explanation
Indices: 45210325--45210416 Score: 82
Period size: 27 Copynumber: 3.3 Consensus size: 27
45210315 ATTAGGCCTT
*
45210325 ATCACATATATATACACTTTCACATTC
1 ATCACATGTATATACACTTTCACATTC
*
45210352 ATCACATCGGCCAT-TAGGC-CTTATCACATGT-
1 ATCACAT--G-TATATA--CACTT-TCACAT-TC
45210383 ATCACATGTATATACACTTTCACATTC
1 ATCACATGTATATACACTTTCACATTC
45210410 ATCACAT
1 ATCACAT
45210417 CGGCCATTAG
Statistics
Matches: 52, Mismatches: 3, Indels: 20
0.69 0.04 0.27
Matches are distributed among these distances:
26 1 0.02
27 21 0.40
28 5 0.10
29 5 0.10
30 5 0.10
31 14 0.27
32 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.07, T:0.34
Consensus pattern (27 bp):
ATCACATGTATATACACTTTCACATTC
Found at i:45210484 original size:156 final size:152
Alignment explanation
Indices: 45210230--45210536 Score: 551
Period size: 156 Copynumber: 2.0 Consensus size: 152
45210220 CACTCGGCCC
* *
45210230 TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
45210295 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
66 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
45210360 GGCCATTAGGCCTTATCACATG
131 GGCCATTAGGCCTTATCACATG
45210382 TATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 TATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
45210447 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCA
62 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
45210512 CATCGGCCATTAGGCCTTATCACAT
127 CATCGGCCATTAGGCCTTATCACAT
45210537 ATACTATCAT
Statistics
Matches: 148, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
152 7 0.05
154 44 0.30
156 97 0.66
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (152 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATG
Found at i:45214616 original size:40 final size:40
Alignment explanation
Indices: 45214584--45214814 Score: 347
Period size: 40 Copynumber: 5.8 Consensus size: 40
45214574 CCAGCATGAT
* * * *
45214584 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
45214624 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
45214664 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
45214704 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
45214744 TGCTCTTCGAGACTTAGCCCGGATACAT-ACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
45214783 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
45214815 CTCAATTCTC
Statistics
Matches: 174, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 38 0.22
40 136 0.78
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:45216961 original size:47 final size:47
Alignment explanation
Indices: 45216890--45217281 Score: 612
Period size: 47 Copynumber: 8.3 Consensus size: 47
45216880 GCCCTTCGGA
* * * * * *
45216890 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45216937 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45216984 CTTATCACATATATACACTTTCACATTCATCACATC-GCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45217030 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45217078 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
45217127 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45217174 CTTATCACATATATATACACTTTCACA-T--TCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45217220 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
45217269 CTTATCACATATA
1 CTTATCACATATA
45217282 CTATCATGTA
Statistics
Matches: 326, Mismatches: 8, Indels: 22
0.92 0.02 0.06
Matches are distributed among these distances:
44 1 0.00
46 59 0.18
47 156 0.48
48 19 0.06
49 91 0.28
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45216968 original size:25 final size:25
Alignment explanation
Indices: 45216940--45217018 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
45216930 ACTCGGCCCT
45216940 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
45216965 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
45216987 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
45217012 ATCACAT
1 ATCACAT
45217019 CGCCATTAGG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:45217224 original size:190 final size:188
Alignment explanation
Indices: 45216890--45217278 Score: 622
Period size: 190 Copynumber: 2.1 Consensus size: 188
45216880 GCCCTTCGGA
* * *
45216890 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
* *
45216955 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT-ATCACATC
45217020 GCCATTAGGCCTTATCAC-TATATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45217078 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
45217143 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACA-T-TCAC
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTATCAC
*
45217206 ATCGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
127 ATC-GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45217269 CTTATCACAT
1 CTTATCACAT
45217279 ATACTATCAT
Statistics
Matches: 186, Mismatches: 9, Indels: 9
0.91 0.04 0.04
Matches are distributed among these distances:
188 10 0.05
189 8 0.04
190 101 0.54
191 50 0.27
192 17 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (188 bp):
CTTATCACATTTATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTATCACATCG
CCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45227234 original size:29 final size:29
Alignment explanation
Indices: 45227201--45227389 Score: 238
Period size: 29 Copynumber: 6.5 Consensus size: 29
45227191 GTGACGAGAT
45227201 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
45227230 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
45227259 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
45227288 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
45227317 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
45227346 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
45227375 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
45227390 GAAATCGAGT
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
28 2 0.01
29 137 0.98
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:45237021 original size:49 final size:49
Alignment explanation
Indices: 45236962--45237059 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
45236952 TTCAAGACCA
*
45236962 CAAATCCGATCCGAAAATAAAATTTATTTTTATTTTAATACATGGTCCT
1 CAAATCCGATCCGAAAATAAAATTTATTTTTATTTTAATACAGGGTCCT
*
45237011 CAAATTCGATCCGAAAATAAAATTTATTTTTATTTTAATACAGGGTCCT
1 CAAATCCGATCCGAAAATAAAATTTATTTTTATTTTAATACAGGGTCCT
45237060 TAATATGTCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (49 bp):
CAAATCCGATCCGAAAATAAAATTTATTTTTATTTTAATACAGGGTCCT
Found at i:45238448 original size:57 final size:58
Alignment explanation
Indices: 45238322--45238449 Score: 136
Period size: 58 Copynumber: 2.2 Consensus size: 58
45238312 CTTATTATAG
** * * * *
45238322 AAAGGATTTAGTTCGGACGGGTAATCCTAATATAAGTCCTCTCGAGCATATGTTATAG
1 AAAGGATTTAGCCCAGACGGGTAATCCTAATATAAGTCCTCTAGAGCATATGTCATAA
** *
45238380 ATTGGATTTAGCCCAGACGGGTAATCC-AGATCA-AGGTCC-CTAGAGCATATGTCATAA
1 AAAGGATTTAGCCCAGACGGGTAATCCTA-AT-ATAAGTCCTCTAGAGCATATGTCATAA
45238437 AAAGGATTTAGCC
1 AAAGGATTTAGCC
45238450 TGTACTGGTA
Statistics
Matches: 57, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
57 27 0.47
58 29 0.51
59 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (58 bp):
AAAGGATTTAGCCCAGACGGGTAATCCTAATATAAGTCCTCTAGAGCATATGTCATAA
Found at i:45243946 original size:46 final size:46
Alignment explanation
Indices: 45243896--45244070 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
45243886 TGGTTGAGCA
45243896 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45243942 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
45243987 CATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
45244034 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45244071 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 22 0.20
46 49 0.45
47 24 0.22
49 4 0.04
50 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45244051 original size:92 final size:93
Alignment explanation
Indices: 45243893--45244061 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 93
45243883 GGATGGTTGA
* *
45243893 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45243958 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
45243986 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45244050 TGAGTCCGAGTT
66 TGAGTCCGAGTT
45244062 TGCTTATGGG
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 49 0.67
93 24 0.33
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45251477 original size:46 final size:46
Alignment explanation
Indices: 45251427--45251602 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
45251417 TGGTTGAGCA
45251427 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45251473 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
45251518 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
45251566 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45251603 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45251583 original size:93 final size:93
Alignment explanation
Indices: 45251424--45251594 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
45251414 GGATGGTTGA
* *
45251424 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45251489 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
45251517 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45251582 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45251595 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45254752 original size:47 final size:47
Alignment explanation
Indices: 45254701--45255141 Score: 758
Period size: 47 Copynumber: 9.4 Consensus size: 47
45254691 GATGTACAAG
*
45254701 GTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
45254748 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
45254795 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
45254842 GTGTGTATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAA
45254889 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* **
45254936 GTGTGTATATGTGATAAGGCCTAATGGTCGTTGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
45254983 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * *
45255030 GTGTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
45255077 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGGATGTGAAA
1 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
45255124 GTGTATAAATGTGATAAG
1 GTGTGTATATGTGATAAG
45255142 TCCCGAAGGG
Statistics
Matches: 376, Mismatches: 16, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 2 0.01
47 372 0.99
48 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:45254784 original size:22 final size:22
Alignment explanation
Indices: 45254756--45254831 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
45254746 AAGTGTGTAT
45254756 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* *** *
45254778 ATGTGATGAATGTGAAAGTGTG-TA
1 ATGTGAT-AAGGCCTAA-TG-GCCA
45254802 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
45254825 ATGTGAT
1 ATGTGAT
45254832 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:45256781 original size:28 final size:26
Alignment explanation
Indices: 45256739--45256808 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 26
45256729 ATATGAATTG
45256739 CACAATTAATAACATGGAGATAGTAA
1 CACAATTAATAACATGGAGATAGTAA
* * *
45256765 CACGATTAAAATAACATGGAGGTAGTCA
1 CACAATT--AATAACATGGAGATAGTAA
45256793 CACAATTAATAACATG
1 CACAATTAATAACATG
45256809 TATTCTGTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 15 0.39
28 23 0.61
ACGTcount: A:0.47, C:0.14, G:0.16, T:0.23
Consensus pattern (26 bp):
CACAATTAATAACATGGAGATAGTAA
Found at i:45258359 original size:29 final size:29
Alignment explanation
Indices: 45258271--45258362 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 29
45258261 TACCTGTATC
* * *
45258271 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
* * * *
45258299 TGACCCATCAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
45258328 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTTATA
45258357 TGGCCC
1 TGGCCC
45258363 GTTACACCCA
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 12 0.23
29 40 0.77
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTTATA
Found at i:45258372 original size:29 final size:29
Alignment explanation
Indices: 45258271--45258385 Score: 83
Period size: 29 Copynumber: 4.0 Consensus size: 29
45258261 TACCTGTATC
* *
45258271 TGGCCCATTA-AGCCC-AATCATATTCATA
1 TGGCCCATTACA-CCCAAATCACATTTATA
* * ** * *
45258299 TGACCCATCAGGCCCAAATCACCTGTATA
1 TGGCCCATTACACCCAAATCACATTTATA
**
45258328 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTACACCCAAATCACATTTATA
* * *
45258357 TGGCCCGTTACACCC-AGTCACATTCATA
1 TGGCCCATTACACCCAAATCACATTTATA
45258385 T
1 T
45258386 TCATGCTCAC
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
28 23 0.33
29 46 0.67
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.26
Consensus pattern (29 bp):
TGGCCCATTACACCCAAATCACATTTATA
Found at i:45263686 original size:47 final size:47
Alignment explanation
Indices: 45263617--45263788 Score: 159
Period size: 49 Copynumber: 3.6 Consensus size: 47
45263607 GGTATAATGC
* *
45263617 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCAATCAAGT
*
45263664 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCGAAATCGAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATC--AATC-AAGT
* ** * * ** *
45263713 CGACGCCATGTCCCAGATGTGTTCTTACACTAGCTCTCAT-ATATCCCTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ATCA-AT-CAAGT
*
45263763 CGATGCCATGTCCTAGACATGGTCTT
1 CGATGCCATGTCCCAGACATGGTCTT
45263789 GCATTGATAC
Statistics
Matches: 100, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
46 4 0.04
47 32 0.32
48 3 0.03
49 33 0.33
50 24 0.24
51 2 0.02
52 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCAATCAAGT
Found at i:45263900 original size:46 final size:46
Alignment explanation
Indices: 45263847--45263972 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 46
45263837 TACATTTCGA
45263847 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCA-AT
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCAT-T-ATAT
* * * * *
45263894 -GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTTATTATGT
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATTATAT
* *
45263941 GGCCGAAGAATGTCCCAGACATGTCTTACACT
1 GGCCGATGCATGTCCCAGACATGTCTTACACT
45263973 GGCGCACGAA
Statistics
Matches: 67, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
46 18 0.27
47 27 0.40
48 22 0.33
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATTATAT
Found at i:45265809 original size:101 final size:101
Alignment explanation
Indices: 45265700--45265894 Score: 250
Period size: 101 Copynumber: 1.9 Consensus size: 101
45265690 TTACATTAGT
* * * * *
45265700 AGTGCCATAACCTAGTTAT-AGT-TTTATCATCAGAATGCCATAGCCCAGCCATGGTCTTGCATA
1 AGTGCCATAACCCAGTTATGA-TCTTT-TCATCAAAATGCCATAACCCAACCATGGTCTTACATA
** * *
45265763 TAATTATTGTCATGGTCCAACCATGGTCTTATGTTCAA
64 TAAACACTGCCATGGTCCAACCATGGTCTTATGTTCAA
* * *
45265801 AGTGCCATAACCCAGTTATGATCTTTTCATTAAAATGCCATAACCCAACTATGGTCTTACATGTA
1 AGTGCCATAACCCAGTTATGATCTTTTCATCAAAATGCCATAACCCAACCATGGTCTTACATATA
45265866 AACACTGCCATGGTCCAACCATGGTCTTA
66 AACACTGCCATGGTCCAACCATGGTCTTA
45265895 CCTATCAATT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
101 76 0.95
102 4 0.05
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (101 bp):
AGTGCCATAACCCAGTTATGATCTTTTCATCAAAATGCCATAACCCAACCATGGTCTTACATATA
AACACTGCCATGGTCCAACCATGGTCTTATGTTCAA
Found at i:45271518 original size:37 final size:37
Alignment explanation
Indices: 45271468--45271590 Score: 228
Period size: 37 Copynumber: 3.3 Consensus size: 37
45271458 TTATTACGAA
*
45271468 GTCTTACCCGGACATAATCTCTACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
45271505 GTCTTACCTGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
45271542 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
45271579 GTCTTACCCGGA
1 GTCTTACCCGGA
45271591 ATATATTTCC
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:45271706 original size:48 final size:48
Alignment explanation
Indices: 45271635--45272144 Score: 975
Period size: 48 Copynumber: 10.6 Consensus size: 48
45271625 TGTTACAACA
* *
45271635 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
45271683 TTCACATTAGCCATTCTGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
45271731 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
45271779 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
45271827 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
*
45271875 TTCACATTAGCCATTCGGCTTTACCACATATACATAACACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
45271923 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
45271971 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
45272019 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
45272067 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
45272115 TTCACATTAGCCATTCGGCTTTACCACATA
1 TTCACATTAGCCATTCGGCTTTACCACATA
45272145 ATTACACTTT
Statistics
Matches: 454, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 454 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATGTAT
Found at i:45273671 original size:13 final size:13
Alignment explanation
Indices: 45273653--45273677 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45273643 TACTAAATTT
45273653 TCATGGATTCAAA
1 TCATGGATTCAAA
45273666 TCATGGATTCAA
1 TCATGGATTCAA
45273678 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:45274522 original size:29 final size:29
Alignment explanation
Indices: 45274467--45274524 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
45274457 TCTCGACATA
* * *
45274467 TACTAGTCCGAAGCCTTTCGTTTAACGGT
1 TACTAGGCCGAAGCCTTACGTTAAACGGT
45274496 TACTAGGCCGAAGCCTTAC-TGTAAACGGT
1 TACTAGGCCGAAGCCTTACGT-TAAACGGT
45274525 ATGACCCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (29 bp):
TACTAGGCCGAAGCCTTACGTTAAACGGT
Found at i:45275015 original size:27 final size:27
Alignment explanation
Indices: 45274995--45275227 Score: 322
Period size: 27 Copynumber: 8.6 Consensus size: 27
45274985 TACCCCAAAA
* * * *
45274995 GGGTATCTCCGTAATTCTACCTTACAA
1 GGGTATTTCAGTAATTCTACCCTACAG
*
45275022 GGGTATTTTAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
45275049 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
45275076 GGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
45275103 GGGTATTTCAGTAATTCTACCTTACAAT
1 GGGTATTTCAGTAATTCTACCCTAC-AG
* *
45275131 GGGTATTCCGGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
*
45275158 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
45275185 GGGTATTTCGGTAATTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAG
* *
45275212 GAGTATTTCAATAATT
1 GGGTATTTCAGTAATT
45275228 TTGTCAATTG
Statistics
Matches: 182, Mismatches: 23, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 159 0.87
28 23 0.13
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:45275175 original size:109 final size:108
Alignment explanation
Indices: 45274993--45275227 Score: 380
Period size: 109 Copynumber: 2.2 Consensus size: 108
45274983 TTTACCCCAA
* * **
45274993 AAGGGTATCTCCGTAATTCTACCTTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
1 AAGGGTATTTCAGTAATTCTACCTTACAAGGGTATTCCAGTAATTCTACCCTACAGGGGTATTTC
45275058 AATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
66 AATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
* *
45275101 AGGGGTATTTCAGTAATTCTACCTTACAATGGGTATTCCGGTAATTCTACCCTACAGGGGTATTT
1 AAGGGTATTTCAGTAATTCTACCTTACAA-GGGTATTCCAGTAATTCTACCCTACAGGGGTATTT
*
45275166 CAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTAC
65 CAATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
* *
45275210 AAGAGTATTTCAATAATT
1 AAGGGTATTTCAGTAATT
45275228 TTGTCAATTG
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
108 26 0.22
109 90 0.78
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (108 bp):
AAGGGTATTTCAGTAATTCTACCTTACAAGGGTATTCCAGTAATTCTACCCTACAGGGGTATTTC
AATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
Found at i:45275295 original size:54 final size:54
Alignment explanation
Indices: 45275249--45275450 Score: 255
Period size: 54 Copynumber: 3.7 Consensus size: 54
45275239 GGGTAAAACG
* * *
45275249 GTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTGCAAATCGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCA
* * *
45275303 GTAATTTTGCAAATTGAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTGCAAATCGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCA
* **
45275357 GTAATTTTGCAAA-CTGAGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTG
1 GTAATTTTGCAAATC-GAGGGTATTTTGGTAATTTTACAAATCGA-GGGTATTTCA
** * *
45275411 GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAA
1 GTAATTTTGCAAATCGAGGGTATTTTGGTAATTTTACAAA
45275451 CTAGGGGTAT
Statistics
Matches: 130, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
53 2 0.02
54 127 0.98
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
GTAATTTTGCAAATCGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCA
Found at i:45275299 original size:81 final size:81
Alignment explanation
Indices: 45275214--45275381 Score: 198
Period size: 81 Copynumber: 2.1 Consensus size: 81
45275204 CCCTACAAGA
* ** *
45275214 GTATTTCAATAATTTTGTC-AATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTACTTT-GG
1 GTATTTCAATAATTTTG-CAAATTGAAGGTAAAACGGTAATTCTACAAATCGAGGGTA-TTTCAG
45275277 TAATTTTACAAA-TCGAGG
64 TAATTTTACAAACT-GAGG
* *** *
45275295 GTATTTCAGTAATTTTGCAAATTGAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTA
1 GTATTTCAATAATTTTGCAAATTGAAGGTAAAACGGTAATTCTACAAATCGAGGGTATTTCAGTA
*
45275360 ATTTTGCAAACTGAGG
66 ATTTTACAAACTGAGG
45275376 GTATTT
1 GTATTT
45275382 TGGTAATTTT
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
80 4 0.05
81 69 0.93
82 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (81 bp):
GTATTTCAATAATTTTGCAAATTGAAGGTAAAACGGTAATTCTACAAATCGAGGGTATTTCAGTA
ATTTTACAAACTGAGG
Found at i:45275388 original size:81 final size:80
Alignment explanation
Indices: 45275259--45275471 Score: 252
Period size: 81 Copynumber: 2.6 Consensus size: 80
45275249 GTAATTCTGT
** * *
45275259 AAATCGAGGGTACTTTGGTAATTTTACAAA-TCGAGGGTATTTCAGTAATTTTGCAAA-TTGAAG
1 AAATCGAGGGTA-TTTGGTAATTTTACAAACT-GAGGGTATTTTGGTAATTTTACAAACTAG-AG
45275322 GTATTTCGGTAATTTTAC
63 GTATTTCGGTAATTTTAC
* * *
45275340 AAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTATTTTGGTAATTTTACAAACTAGGGGT
1 AAATCGAGGGTATTT-GGTAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAACTAGAGGT
* *
45275405 ATTTTGGTAATTTTAT
65 ATTTCGGTAATTTTAC
* *
45275421 AAACCAAGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTT
1 AAATCGAGGGTA-TTTGGTAATTTTACAAACTGA-GGGTATTTTGGTAATTT
45275472 GGTAAACTAA
Statistics
Matches: 114, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
80 4 0.04
81 104 0.91
82 6 0.05
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (80 bp):
AAATCGAGGGTATTTGGTAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAACTAGAGGTA
TTTCGGTAATTTTAC
Found at i:45275478 original size:54 final size:54
Alignment explanation
Indices: 45275247--45275478 Score: 245
Period size: 54 Copynumber: 4.3 Consensus size: 54
45275237 GAGGGTAAAA
* * * * *
45275247 CGGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAATCGAGGGTATTT
1 CGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTT
* * ** * *
45275301 CAGTAATTTTGCAAATTGAA-GGTATTTCGGTAATTTTACAAATCGAGGGTATTT
1 CGGTAATTTTGTAAA-CCAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTT
* * **
45275355 CAGTAATTTTGCAAACTGAGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT
1 CGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTT
* *
45275409 TGGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT
1 CGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTT
* *
45275463 TGGTAATTTGGTAAAC
1 CGGTAATTTTGTAAAC
45275479 TAAAGTATTC
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 150 0.97
55 4 0.03
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (54 bp):
CGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTT
Found at i:45275480 original size:27 final size:27
Alignment explanation
Indices: 45275266--45275471 Score: 213
Period size: 27 Copynumber: 7.6 Consensus size: 27
45275256 TGTAAATCGA
* *
45275266 GGGTACTTTGGTAATTTTACAAA-TCG
1 GGGTATTTTGGTAATTTTACAAACTAG
** * *
45275292 AGGGTATTTCAGTAATTTTGCAAA-TTG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* * *
45275319 AAGGTATTTCGGTAATTTTACAAA-TCG
1 -GGGTATTTTGGTAATTTTACAAACTAG
** *
45275346 AGGGTATTTCAGTAATTTTGCAAACT-G
1 -GGGTATTTTGGTAATTTTACAAACTAG
45275373 AGGGTATTTTGGTAATTTTACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* * *
45275401 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAG
45275428 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
45275455 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
45275472 GGTAAACTAA
Statistics
Matches: 156, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
27 154 0.99
28 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:45282043 original size:16 final size:16
Alignment explanation
Indices: 45282024--45282054 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45282014 CTTCTTCACT
45282024 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
45282040 TACTTACTTACTTAA
1 TACTCACTTACTTAA
45282055 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:45282060 original size:20 final size:20
Alignment explanation
Indices: 45282021--45282060 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
45282011 AAACTTCTTC
* *
45282021 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
45282041 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
45282061 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:45282494 original size:55 final size:54
Alignment explanation
Indices: 45282246--45282500 Score: 215
Period size: 55 Copynumber: 4.8 Consensus size: 54
45282236 ACACGGGTAC
* * * **
45282246 CTTACC-ATTTCCATGACTTGTCATGGTCTTATGTGGTATCCTT---TTA-AAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * * *
45282295 CTAACC-ATTGCCATGTCTCGACATTGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
* * * * *
45282348 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CATTTGCCTTATAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATC-CTTGCC-T-TAGAAA
* **
45282403 CTTATCAA-TGCCATGTTTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
* * *
45282456 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTTTCCTT
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
45282501 AAACTCTAAT
Statistics
Matches: 164, Mismatches: 29, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
49 35 0.21
52 4 0.02
53 42 0.26
54 11 0.07
55 71 0.43
56 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.37
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAGAAA
Found at i:45289644 original size:16 final size:16
Alignment explanation
Indices: 45289625--45289655 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45289615 CTTCTTCACT
45289625 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
45289641 TACTTACTTACTTAA
1 TACTCACTTACTTAA
45289656 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:45289661 original size:20 final size:20
Alignment explanation
Indices: 45289622--45289661 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
45289612 AAACTTCTTC
* *
45289622 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
45289642 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
45289662 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:45289976 original size:53 final size:54
Alignment explanation
Indices: 45289848--45290102 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 54
45289838 ACAAAGGTAC
* * * * *
45289848 CTTACCATTGCCATGACTTGTCATGATCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
45289897 CTAACCATTGCCATGTCTTGACATGGTCTTACATGCTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * * *
45289950 CTTACCAATGCCATGCCTTGGCATGGTCATACATGGGA-CATTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC-CTTGCCTTAT-GAAA
* * **
45290005 CTTATCAATGTCATTTCTTGACATGGTCTTACATGGTATCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
45290058 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
45290103 AAACCCTAAT
Statistics
Matches: 166, Mismatches: 29, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
49 35 0.21
50 1 0.01
52 1 0.01
53 47 0.28
54 10 0.06
55 71 0.43
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:45294090 original size:40 final size:40
Alignment explanation
Indices: 45294035--45294198 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
45294025 TGATACCCGA
* *
45294035 GCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGG
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
* *
45294075 GCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATATCCGG
1 GCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATATCCGG
* * ** * *
45294115 GCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCAG
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
* * * *
45294155 GTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-G
1 GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
45294194 GCTAA
1 GCTAA
45294199 ATTCCGAAGA
Statistics
Matches: 101, Mismatches: 21, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
39 6 0.06
40 93 0.92
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
GCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCGG
Found at i:45307803 original size:15 final size:15
Alignment explanation
Indices: 45307785--45307827 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
45307775 TCTGAGACAG
45307785 AGAAATCCAAGATAA
1 AGAAATCCAAGATAA
**
45307800 AGAAACTCCCAAGATTC
1 AGAAA-T-CCAAGATAA
45307817 AGAAATCCAAG
1 AGAAATCCAAG
45307828 TTACAATACC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 10 0.42
16 2 0.08
17 12 0.50
ACGTcount: A:0.51, C:0.21, G:0.14, T:0.14
Consensus pattern (15 bp):
AGAAATCCAAGATAA
Found at i:45310844 original size:29 final size:29
Alignment explanation
Indices: 45310811--45310913 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
45310801 CCTCCGAACT
** * * *
45310811 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
45310840 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
45310869 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
45310898 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
45310914 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:45312911 original size:19 final size:19
Alignment explanation
Indices: 45312887--45312924 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
45312877 GTGGACATAG
45312887 GGACACGCTCGTGTGTCTT
1 GGACACGCTCGTGTGTCTT
45312906 GGACACGCTCGTGTGTCTT
1 GGACACGCTCGTGTGTCTT
45312925 CAACACGCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.32, T:0.32
Consensus pattern (19 bp):
GGACACGCTCGTGTGTCTT
Found at i:45312930 original size:19 final size:19
Alignment explanation
Indices: 45312889--45312932 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
45312879 GGACATAGGG
**
45312889 ACACGCTCGTGTGTCTTGG
1 ACACGCTCGTGTGTCTTCA
45312908 ACACGCTCGTGTGTCTTCA
1 ACACGCTCGTGTGTCTTCA
45312927 ACACGC
1 ACACGC
45312933 CCATGTCCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.16, C:0.32, G:0.25, T:0.27
Consensus pattern (19 bp):
ACACGCTCGTGTGTCTTCA
Found at i:45317572 original size:20 final size:21
Alignment explanation
Indices: 45317547--45317588 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
45317537 TCTTTGAAAC
45317547 AAGGC-ACACGCTCGTGTGGA
1 AAGGCAACACGCTCGTGTGGA
45317567 AAGGCAACACGCTCGTGTGGA
1 AAGGCAACACGCTCGTGTGGA
45317588 A
1 A
45317589 TTAATTCTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.29, C:0.24, G:0.33, T:0.14
Consensus pattern (21 bp):
AAGGCAACACGCTCGTGTGGA
Found at i:45319561 original size:45 final size:45
Alignment explanation
Indices: 45319442--45319564 Score: 178
Period size: 45 Copynumber: 2.7 Consensus size: 45
45319432 CATCCATTAT
*
45319442 GAACTTGGACCAACTCAACAAGCTTGGA-TGCTTCACATATACCAC
1 GAACTTGGACCAACTCAACAAGCTTGGATTTC-TCACATATACCAC
* *
45319487 GAACTTAGACCAACTCAACAAG-TTCGGATTTCTCACATATATCAC
1 GAACTTGGACCAACTCAACAAGCTT-GGATTTCTCACATATACCAC
*
45319532 GAACTTGGACCAACTCAACCAGCTTGGATTTCT
1 GAACTTGGACCAACTCAACAAGCTTGGATTTCT
45319565 TAATTCCTAG
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
44 2 0.03
45 64 0.91
46 4 0.06
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.25
Consensus pattern (45 bp):
GAACTTGGACCAACTCAACAAGCTTGGATTTCTCACATATACCAC
Found at i:45330490 original size:43 final size:43
Alignment explanation
Indices: 45330443--45330556 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
45330433 TAACATATCG
* * * *
45330443 ATGCCACTGTCCTAGATAGCGTCTTACACAAAATCA-TATAACA
1 ATGCCAATGTCCCAGACAGCGTCTTACACAAAATCACAAT-ACA
** *
45330486 ATGCCAATGTCCCAGACATTGTCTTACACATAATCACAATACA
1 ATGCCAATGTCCCAGACAGCGTCTTACACAAAATCACAATACA
45330529 ATGCCAATGTCCCAGACATG-GTCTTACA
1 ATGCCAATGTCCCAGACA-GCGTCTTACA
45330557 TGTAACCACA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 59 0.97
44 2 0.03
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGCGTCTTACACAAAATCACAATACA
Found at i:45341146 original size:25 final size:26
Alignment explanation
Indices: 45341115--45341197 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 26
45341105 TAATGCAAGA
*
45341115 GCATATAGTGAA-TCCGCACACTTAGT
1 GCATATAGTCAACT-CGCACACTTAGT
*
45341141 GCTATATATTCAACTCGCACACTTAGT
1 GC-ATATAGTCAACTCGCACACTTAGT
*
45341168 GCTATATAATCAAACTCGCACACTTAGT
1 GC-ATATAGTC-AACTCGCACACTTAGT
45341196 GC
1 GC
45341198 TGTACAATTT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
26 2 0.04
27 30 0.59
28 19 0.37
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
GCATATAGTCAACTCGCACACTTAGT
Found at i:45341147 original size:27 final size:27
Alignment explanation
Indices: 45341129--45341198 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
45341119 ATAGTGAATC
*
45341129 CGCACACTTAGTGCTATATATTCAACT
1 CGCACACTTAGTGCTATATAATCAACT
45341156 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
45341184 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45341199 GTACAATTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:45341192 original size:28 final size:28
Alignment explanation
Indices: 45341129--45341227 Score: 128
Period size: 28 Copynumber: 3.5 Consensus size: 28
45341119 ATAGTGAATC
*
45341129 CGCACACTTAGTGCTATATATTC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
45341156 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
45341184 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
45341214 CGCACACTTAGTGC
1 CGCACACTTAGTGC
45341228 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:45349267 original size:52 final size:49
Alignment explanation
Indices: 45349189--45349400 Score: 217
Period size: 50 Copynumber: 4.1 Consensus size: 49
45349179 TGATGTGTTT
* * * *
45349189 TAAAAAAACATATTTTTTTAGGGTGGAGGGGGAGAGATGGGTAGCGCCAGTA
1 TAAAAAAA-A-ATTTTTTT-GGGTGGAGGGAGAGAGATAGGTGGCACCAGTA
* * *
45349241 TAAAAAATTAGAATTTTTTTGGGTGGAGAGAGAGAGATGGGTGGCACTAGTA
1 TAAAAAA--A-AATTTTTTTGGGTGGAGGGAGAGAGATAGGTGGCACCAGTA
* * * * *
45349293 TAAAAAAAATTTTTTTTTTGGTGAAGGGAGAGAGATAGGTGTCTCCAGTA
1 TAAAAAAAA-ATTTTTTTGGGTGGAGGGAGAGAGATAGGTGGCACCAGTA
* *
45349343 TAAAAAAAATTACTTTTTTGGGTGGAGGGAGAGAGATAGGCGGCACCAGTA
1 TAAAAAAAA--ATTTTTTTGGGTGGAGGGAGAGAGATAGGTGGCACCAGTA
45349394 TAAAAAA
1 TAAAAAA
45349401 GTAATATTAT
Statistics
Matches: 135, Mismatches: 21, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
49 1 0.01
50 42 0.31
51 41 0.30
52 41 0.30
53 8 0.06
54 2 0.01
ACGTcount: A:0.36, C:0.07, G:0.30, T:0.27
Consensus pattern (49 bp):
TAAAAAAAAATTTTTTTGGGTGGAGGGAGAGAGATAGGTGGCACCAGTA
Found at i:45349425 original size:51 final size:48
Alignment explanation
Indices: 45349270--45349430 Score: 153
Period size: 51 Copynumber: 3.2 Consensus size: 48
45349260 TGGGTGGAGA
* * *
45349270 GAGAGAGATGGGTGGCACTAGTATAAAAAAAAT-TTTTTTTTTGGTGAAGG
1 GAGAGAGATAGGTGGCACCAGTATAAAAAAAATATTTTTTATT-G-GAA-G
* * ** *
45349320 GAGAGAGATAGGTGTCTCCAGTATAAAAAAAATTACTTTTTTGGGTGGAGG
1 GAGAGAGATAGGTGGCACCAGTATAAAAAAAA-TA-TTTTTT-ATTGGAAG
*
45349371 GAGAGAGATAGGCGGCACCAGTATAAAAAAGTAATATTATTTTATTGGAAG
1 GAGAGAGATAGGTGGCACCAGTATAAAAAA--AATATT-TTTTATTGGAAG
45349422 GAGAGAGAT
1 GAGAGAGAT
45349431 GGGCAACATC
Statistics
Matches: 91, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
50 28 0.31
51 45 0.49
52 8 0.09
53 9 0.10
54 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.29, T:0.28
Consensus pattern (48 bp):
GAGAGAGATAGGTGGCACCAGTATAAAAAAAATATTTTTTATTGGAAG
Found at i:45351548 original size:44 final size:44
Alignment explanation
Indices: 45351485--45351569 Score: 170
Period size: 44 Copynumber: 1.9 Consensus size: 44
45351475 CGGTCTACAC
45351485 TTAACCTTTTCACCTAAAATGAATTTTCTTCATCTAATTAGCAT
1 TTAACCTTTTCACCTAAAATGAATTTTCTTCATCTAATTAGCAT
45351529 TTAACCTTTTCACCTAAAATGAATTTTCTTCATCTAATTAG
1 TTAACCTTTTCACCTAAAATGAATTTTCTTCATCTAATTAG
45351570 TCATCTATGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.44
Consensus pattern (44 bp):
TTAACCTTTTCACCTAAAATGAATTTTCTTCATCTAATTAGCAT
Found at i:45351554 original size:24 final size:24
Alignment explanation
Indices: 45351485--45351554 Score: 60
Period size: 24 Copynumber: 3.1 Consensus size: 24
45351475 CGGTCTACAC
45351485 TTAACCTTTTCACCTAAAATGAAT
1 TTAACCTTTTCACCTAAAATGAAT
* * * *
45351509 TT----TCTTCATCT-AATTAGCAT
1 TTAACCTTTTCACCTAAAAT-GAAT
45351529 TTAACCTTTTCACCTAAAATGAAT
1 TTAACCTTTTCACCTAAAATGAAT
45351553 TT
1 TT
45351555 TCTTCATCTA
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
19 3 0.09
20 12 0.38
24 14 0.44
25 3 0.09
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAACCTTTTCACCTAAAATGAAT
Found at i:45357549 original size:39 final size:39
Alignment explanation
Indices: 45357491--45357567 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
45357481 ATGCAGAACA
*
45357491 CATATTAATGATGTGCAAACTATGACATAATTAAAGACT
1 CATATTAATGATGTGCAAACTATGACATAAGTAAAGACT
* *
45357530 CATATTAATGATGTTCAAACTATTACATAAGTAAAGAC
1 CATATTAATGATGTGCAAACTATGACATAAGTAAAGAC
45357568 AAACTAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (39 bp):
CATATTAATGATGTGCAAACTATGACATAAGTAAAGACT
Done.