Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 15 of 425
Found at i:4165213 original size:46 final size:46
Alignment explanation
Indices: 4165163--4165251 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 46
4165153 AGTCTAAACT
*
4165163 AAAAATAATAATCTTATTTACTTCAAAAT-AAAAATAAAATAATTAA
1 AAAAAT-ATAATCTGATTTACTTCAAAATAAAAAATAAAATAATTAA
* * *
4165209 AAAAATGTAATCTGGTTTGCTTCAAAATAAAAAATAAAATAAT
1 AAAAATATAATCTGATTTACTTCAAAATAAAAAATAAAATAAT
4165252 AAATTAAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 18 0.47
46 20 0.53
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (46 bp):
AAAAATATAATCTGATTTACTTCAAAATAAAAAATAAAATAATTAA
Found at i:4165614 original size:41 final size:41
Alignment explanation
Indices: 4165548--4165785 Score: 334
Period size: 41 Copynumber: 5.8 Consensus size: 41
4165538 GCGTTAGTCC
* * * *
4165548 AAAAGCGCCGCAAATGCTCATATCTATTGCGGCGCTTATTG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTATTG
4165589 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTATTG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTATTG
* ** *
4165630 AAAAGCGTAGCTAATGCTCATATCTATAGCGGCGCTTATTG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTATTG
** *
4165671 AAAAACGCCGAGAATGCTCAGATCTATAGCGGCGCTTATTT
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTATTG
* *
4165712 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGGTTTTTG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTATTG
* *
4165753 AAAAACGTCGCTAATGCTC-GATTTATAGCGGCG
1 AAAAACGCCGCTAATGCTCAGATCTATAGCGGCG
4165786 TTTTTTCAAA
Statistics
Matches: 175, Mismatches: 22, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
40 13 0.07
41 162 0.93
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (41 bp):
AAAAACGCCGCTAATGCTCAGATCTATAGCGGCGCTTATTG
Found at i:4166087 original size:7 final size:7
Alignment explanation
Indices: 4166075--4166247 Score: 60
Period size: 7 Copynumber: 23.6 Consensus size: 7
4166065 TATAGTTCAA
4166075 GGTTTAT
1 GGTTTAT
*
4166082 GGTTTAG
1 GGTTTAT
*
4166089 GGTATAT
1 GGTTTAT
* *
4166096 AGTTTAA
1 GGTTTAT
4166103 GGTTTAT
1 GGTTTAT
4166110 GGTTTATGAT
1 GG-TT-T-AT
*
4166120 GAGTTAAT
1 G-GTTTAT
** *
4166128 ATTTTAA
1 GGTTTAT
4166135 GGTTTAT
1 GGTTTAT
**
4166142 GAATTAT
1 GGTTTAT
*
4166149 GGGTTTAG
1 -GGTTTAT
*
4166157 GGTTTAA
1 GGTTTAT
*
4166164 GGTTTAGG
1 GGTTTA-T
4166172 GGTTTAT
1 GGTTTAT
4166179 GGTTTAT
1 GGTTTAT
*
4166186 GAGTTAAT
1 G-GTTTAT
* * *
4166194 -ATCTCAA
1 GGT-TTAT
4166201 GGTTTAT
1 GGTTTAT
4166208 GGTTTAT
1 GGTTTAT
*
4166215 GGATTAT
1 GGTTTAT
* *
4166222 GGACTTAG
1 GG-TTTAT
*
4166230 GGATTAT
1 GGTTTAT
*
4166237 GATTTAT
1 GGTTTAT
4166244 GGTT
1 GGTT
4166248 CAAGGGTTGA
Statistics
Matches: 117, Mismatches: 39, Indels: 20
0.66 0.22 0.11
Matches are distributed among these distances:
6 1 0.01
7 84 0.72
8 25 0.21
9 1 0.01
10 5 0.04
11 1 0.01
ACGTcount: A:0.24, C:0.02, G:0.28, T:0.46
Consensus pattern (7 bp):
GGTTTAT
Found at i:4166155 original size:22 final size:22
Alignment explanation
Indices: 4166130--4166187 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
4166120 GAGTTAATAT
*
4166130 TTTAAGGTTTATGAATTATGGG
1 TTTAAGGTTTATGAATTAGGGG
* * **
4166152 TTTAGGGTTTAAGGTTTAGGGG
1 TTTAAGGTTTATGAATTAGGGG
*
4166174 TTTATGGTTTATGA
1 TTTAAGGTTTATGA
4166188 GTTAATATCT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (22 bp):
TTTAAGGTTTATGAATTAGGGG
Found at i:4166174 original size:15 final size:14
Alignment explanation
Indices: 4166150--4166184 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
4166140 ATGAATTATG
4166150 GGTTTAGGGTTTAA
1 GGTTTAGGGTTTAA
*
4166164 GGTTTAGGGGTTTAT
1 GGTTTA-GGGTTTAA
4166179 GGTTTA
1 GGTTTA
4166185 TGAGTTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:4166319 original size:44 final size:43
Alignment explanation
Indices: 4166228--4166319 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 43
4166218 TTATGGACTT
* * * *
4166228 AGGGATTATGATTTATGGTTCAAGGGTTGAGGTTTAGAGATTT
1 AGGGTTTATGATTTAGGGTTAAAGGGTTGAGGTTTAGAGATTA
4166271 AGGGTTTATGATTTAGGGGTTAAAGGG-TGAGGGTTTAGA-AGTTA
1 AGGGTTTATGATTTA-GGGTTAAAGGGTTGA-GGTTTAGAGA-TTA
4166315 AGGGT
1 AGGGT
4166320 CTAGGGGTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
43 18 0.43
44 24 0.57
ACGTcount: A:0.26, C:0.01, G:0.37, T:0.36
Consensus pattern (43 bp):
AGGGTTTATGATTTAGGGTTAAAGGGTTGAGGTTTAGAGATTA
Found at i:4166623 original size:16 final size:16
Alignment explanation
Indices: 4166570--4166623 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 16
4166560 ATATTAAATA
*
4166570 ATTTCAAATTTTAAAG
1 ATTTCAAATTTTCAAG
4166586 ATTTCAAATTTTC-A-
1 ATTTCAAATTTTCAAG
4166600 A--T--AATTTTCAAG
1 ATTTCAAATTTTCAAG
4166612 ATTTCAAATTTT
1 ATTTCAAATTTT
4166624 ATCTAATTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 12
0.70 0.02 0.27
Matches are distributed among these distances:
10 7 0.23
11 1 0.03
12 2 0.06
14 2 0.06
15 1 0.03
16 18 0.58
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (16 bp):
ATTTCAAATTTTCAAG
Found at i:4167763 original size:2 final size:2
Alignment explanation
Indices: 4167756--4167788 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4167746 TAATAGGAGT
4167756 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4167789 TATCCGTGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4167892 original size:14 final size:15
Alignment explanation
Indices: 4167873--4167902 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
4167863 TGTGTTTATA
4167873 TAAATACAT-AATTC
1 TAAATACATAAATTC
4167887 TAAATACATAAATTC
1 TAAATACATAAATTC
4167902 T
1 T
4167903 GAAGTTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAATACATAAATTC
Found at i:4171159 original size:23 final size:23
Alignment explanation
Indices: 4171129--4171178 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
4171119 AACATTAATC
4171129 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
4171152 AAATGTATGAATTGCAGCCCTTT
1 AAATGTATGAATTGCAGCCCTTT
4171175 AAAT
1 AAAT
4171179 AAACTTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGTATGAATTGCAGCCCTTT
Found at i:4172088 original size:26 final size:26
Alignment explanation
Indices: 4172059--4172168 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
4172049 TGATACAAAT
4172059 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
4172085 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
4172111 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
4172137 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
4172163 TGATAA
1 TGATAA
4172169 GAATTCATGT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:4173686 original size:25 final size:25
Alignment explanation
Indices: 4173657--4173705 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
4173647 ATAGTTTTAC
4173657 CCCTAGGAGATAAATT-ACCGAAATA
1 CCCTAGG-GATAAATTGACCGAAATA
* *
4173682 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
4173706 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.24
Consensus pattern (25 bp):
CCCTAGGGATAAATTGACCGAAATA
Found at i:4174197 original size:137 final size:136
Alignment explanation
Indices: 4173952--4174237 Score: 536
Period size: 137 Copynumber: 2.1 Consensus size: 136
4173942 GAGTAGTCTC
*
4173952 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
4174017 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
4174082 CTGTTA
131 CTGTTA
4174088 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
4174153 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
4174218 ACTGTTA
130 ACTGTTA
**
4174225 CCTGAATGGGCTT
1 CCCAAATGGGCTT
4174238 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 20 0.14
137 126 0.86
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:4175496 original size:12 final size:12
Alignment explanation
Indices: 4175479--4175521 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
4175469 ACTCGGGGAA
4175479 GAGGCCGTGGTC
1 GAGGCCGTGGTC
4175491 GAGGCCGTGGTC
1 GAGGCCGTGGTC
4175503 GAGGCCGTGGTC
1 GAGGCCGTGGTC
4175515 GAGGCCG
1 GAGGCCG
4175522 AGGTAGTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.09, C:0.26, G:0.51, T:0.14
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:4180408 original size:26 final size:26
Alignment explanation
Indices: 4180379--4180488 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
4180369 TGATACAAAT
4180379 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
4180405 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
4180431 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
4180457 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
4180483 TGATAA
1 TGATAA
4180489 GAATTTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:4183671 original size:9 final size:9
Alignment explanation
Indices: 4183648--4183775 Score: 114
Period size: 9 Copynumber: 13.6 Consensus size: 9
4183638 ATTGATCATT
*
4183648 ACTTAAATA
1 ACTTACATA
*
4183657 AATTACATA
1 ACTTACATA
4183666 ACTTACATA
1 ACTTACATA
* *
4183675 ACTCATATA
1 ACTTACATA
4183684 ACTTACATA
1 ACTTACATA
*
4183693 ATTTACATAACA
1 ACTTACAT---A
4183705 ACTTACATA
1 ACTTACATA
*
4183714 ACTCACATA
1 ACTTACATA
4183723 ACTTACATA
1 ACTTACATA
*
4183732 ATTTACATA
1 ACTTACATA
*
4183741 ACTCACATA
1 ACTTACATA
4183750 A-TGTACATAACA
1 ACT-TACAT---A
4183762 ACTTACATA
1 ACTTACATA
4183771 ACTTA
1 ACTTA
4183776 ACTAATACAT
Statistics
Matches: 96, Mismatches: 15, Indels: 16
0.76 0.12 0.13
Matches are distributed among these distances:
8 1 0.01
9 79 0.82
12 15 0.16
13 1 0.01
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (9 bp):
ACTTACATA
Found at i:4183717 original size:39 final size:39
Alignment explanation
Indices: 4183665--4183742 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
4183655 TAAATTACAT
*
4183665 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
4183704 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
4183743 TCACATAATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:4183742 original size:57 final size:57
Alignment explanation
Indices: 4183661--4183773 Score: 181
Period size: 57 Copynumber: 2.0 Consensus size: 57
4183651 TAAATAAATT
* * *
4183661 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAATGTACATAACAACTTACATAACTC
* *
4183718 ACATAACTTACATAATTTACATAACTCACATAATGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAATGTACATAACAACTTACATAACT
4183774 TAACTAATAC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.46, C:0.22, G:0.01, T:0.31
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAATGTACATAACAACTTACATAACTC
Found at i:4189891 original size:44 final size:43
Alignment explanation
Indices: 4189782--4189941 Score: 198
Period size: 43 Copynumber: 3.7 Consensus size: 43
4189772 GTAGAAAAAG
4189782 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTACCCACAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTACCCACAAA
* *
4189825 CGCCGCTAAAAGCCATGACTTTTAGCGACGCTTCAAACCCA-AAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTT--TACCCACAAA
** * *
4189869 CGCCTTTAAAAGCCGTGGCTTTTAGCGGCGCTTTTA-CCACAAA
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCGC-TTTACCCACAAA
* * *
4189912 CGCCGCCAAAAGCCGTGGCTTTTAGCGGCG
1 CGCCGCTAAAAGCCATGACTTTTAGCGGCG
4189942 TTTTTTCAAT
Statistics
Matches: 102, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
42 3 0.03
43 63 0.62
44 29 0.28
45 7 0.07
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.21
Consensus pattern (43 bp):
CGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTACCCACAAA
Found at i:4190045 original size:99 final size:100
Alignment explanation
Indices: 4189925--4190121 Score: 342
Period size: 99 Copynumber: 2.0 Consensus size: 100
4189915 CGCCAAAAGC
* * *
4189925 CGTGGCTTTTAGCGGCGTTTTTTCAATAAACGCTATAAAATTATGTGGCGTTACCTATAGCGGCG
1 CGTGACTTTTAGCGGCATTTTTTCAATAAACGCCATAAAATTATGTGGCGTTACCTATAGCGGCG
4189990 TTTTTTGCGGCGTTTTAGAAAG-GCCGCTAAAATT
66 TTTTTTGCGGCGTTTTAGAAAGCGCCGCTAAAATT
* *
4190024 CGTGACTTTTAGCGGCATTTTTTCAATAAACGCCATAAAATTTTGTGGCGTTACCTATAGCTGCG
1 CGTGACTTTTAGCGGCATTTTTTCAATAAACGCCATAAAATTATGTGGCGTTACCTATAGCGGCG
4190089 TTTTTTGCGGCGTTTTAGAAAGCGCCGCTAAAA
66 TTTTTTGCGGCGTTTTAGAAAGCGCCGCTAAAA
4190122 GTTTTAGGGG
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
99 82 0.89
100 10 0.11
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (100 bp):
CGTGACTTTTAGCGGCATTTTTTCAATAAACGCCATAAAATTATGTGGCGTTACCTATAGCGGCG
TTTTTTGCGGCGTTTTAGAAAGCGCCGCTAAAATT
Found at i:4192673 original size:2 final size:2
Alignment explanation
Indices: 4192666--4192701 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4192656 GGACATAATC
4192666 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4192702 TAGTTTGGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4193071 original size:16 final size:17
Alignment explanation
Indices: 4193058--4193090 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
4193048 TACCTTTATT
4193058 AATTT-AAAATTTTAAA
1 AATTTAAAAATTTTAAA
4193074 AATTTAAAAATTTTAAA
1 AATTTAAAAATTTTAAA
4193091 GAGGTAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATTTAAAAATTTTAAA
Found at i:4196042 original size:46 final size:52
Alignment explanation
Indices: 4195969--4196069 Score: 124
Period size: 49 Copynumber: 2.1 Consensus size: 52
4195959 TTAACAACAT
* **
4195969 AAACAATATAATGATTTTGCCTCTTAAC-TTA-ATTA-GTAAACATTTATCA
1 AAACAATATAATGATTTTACCTCTTAACTTTAGAAAAGGTAAACATTTATCA
*
4196018 AAACAATAT-A-G-TTTTACCTTTTAACTTTAGAAAAGGTAAACATTTATCA
1 AAACAATATAATGATTTTACCTCTTAACTTTAGAAAAGGTAAACATTTATCA
4196067 AAA
1 AAA
4196070 TGACGTAGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
46 12 0.27
47 4 0.09
48 3 0.07
49 26 0.58
ACGTcount: A:0.44, C:0.13, G:0.07, T:0.37
Consensus pattern (52 bp):
AAACAATATAATGATTTTACCTCTTAACTTTAGAAAAGGTAAACATTTATCA
Found at i:4203394 original size:22 final size:21
Alignment explanation
Indices: 4203366--4203416 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
4203356 AACATTAAAC
4203366 ATATATTTT-TACATTAATATTA
1 ATATATTTTATA-ATTAA-ATTA
4203388 ATATATTTTATAATTAAATTA
1 ATATATTTTATAATTAAATTA
4203409 A-A-ATTTTA
1 ATATATTTTA
4203417 ATATAATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.21
20 1 0.04
21 5 0.18
22 14 0.50
23 2 0.07
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
ATATATTTTATAATTAAATTA
Found at i:4203409 original size:27 final size:31
Alignment explanation
Indices: 4203381--4203443 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 31
4203371 TTTTTACATT
4203381 AATATTAATAT-ATTT-TA-TAATTAAATTAA
1 AATATTAATATAATTTATATTAATTAAATT-A
* *
4203410 AATTTTAATATAATTTATATTAATTAAATCA
1 AATATTAATATAATTTATATTAATTAAATTA
4203441 AAT
1 AAT
4203444 TTGGGTTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 10 0.34
30 4 0.14
31 6 0.21
32 9 0.31
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (31 bp):
AATATTAATATAATTTATATTAATTAAATTA
Found at i:4206902 original size:51 final size:52
Alignment explanation
Indices: 4206822--4206922 Score: 168
Period size: 51 Copynumber: 2.0 Consensus size: 52
4206812 CATGAAATTC
4206822 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTA-CTAACCCA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
* * *
4206873 TTATCATGGAACATTTACCTAACCTATTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACC
4206923 TTTTATCAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 40 0.87
52 6 0.13
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (52 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
Found at i:4206930 original size:26 final size:26
Alignment explanation
Indices: 4206822--4206922 Score: 168
Period size: 26 Copynumber: 3.9 Consensus size: 26
4206812 CATGAAATTC
4206822 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
4206848 TTATCATGAAACATTTA-CTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4206873 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
4206899 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
4206923 TTTTATCAAT
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
25 24 0.33
26 48 0.67
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4210348 original size:3 final size:3
Alignment explanation
Indices: 4210340--4210789 Score: 187
Period size: 3 Copynumber: 149.0 Consensus size: 3
4210330 TGCTATTACC
4210340 ATT ATT ATT ATT ATT ATT ATTT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
4210386 ATT ATT ATT ATT ATT ATT ATT AATT -TT ACCT -TT ATT -TT CTTT ACT
1 ATT ATT ATT ATT ATT ATT ATT -ATT ATT A-TT ATT ATT ATT -ATT ATT
* * * * * * *
4210431 ATT -TT TTT ATT ATC ATT AACT ACT ATC ATT ATT ATA AAT A-T ATT
1 ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
4210475 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ACT ACT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * *
4210523 ACTT -TCT ATCT ATT ATT ATT A-T CTT ATT -TAA AAT ATT GTT ATT ATT
1 A-TT AT-T AT-T ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT
* * * *
4210569 ATT A-T AGCT ATT ATT ATGGT ATT A-T ACT ATT ACGT -TT ATT ATT AGT
1 ATT ATT A-TT ATT ATT AT--T ATT ATT ATT ATT A-TT ATT ATT ATT ATT
* ** ** *
4210615 ACT AGC ATT AATT ATT ATT ATT ACC ATT A-T ATTT ATT ACT ATT -TT
1 ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT
* * * * * * *
4210660 AGT ATT ATT ATT -TT CTTT AGT ACT ATC ACT ATT ATT A-A ATT ATT
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
4210704 -TGT CTT ATT AATGT ACT GTT ATT ATTT ACT ATA ACT ATT ATT ACT ATT
1 AT-T ATT ATT -AT-T ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT
* * * * *
4210752 ATT TTT ACT ATT ATA ATT ATT ATT AAT CTT -TT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4210790 CTCTTACATT
Statistics
Matches: 336, Mismatches: 75, Indels: 72
0.70 0.16 0.15
Matches are distributed among these distances:
2 27 0.08
3 271 0.81
4 34 0.10
5 4 0.01
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:4210650 original size:43 final size:42
Alignment explanation
Indices: 4210561--4210670 Score: 100
Period size: 43 Copynumber: 2.6 Consensus size: 42
4210551 TAAAATATTG
* * *
4210561 TTATTATTATTATAGCTATTATTATGGTATTATACTATTACGT
1 TTATTATTAGTATAGCTATTATTAT-GTATTATACCATTACAT
*
4210604 TTATTATTAGTACTAGC-ATTAATTAT-TATTATTACCATTATAT
1 TTATTATTAGTA-TAGCTATT-ATTATGTATTA-TACCATTACAT
* * *
4210647 TTATTACTATTTTAG-TATTATTAT
1 TTATTATTAGTATAGCTATTATTAT
4210671 TTTCTTTAGT
Statistics
Matches: 56, Mismatches: 7, Indels: 10
0.77 0.10 0.14
Matches are distributed among these distances:
41 5 0.09
42 11 0.20
43 31 0.55
44 9 0.16
ACGTcount: A:0.32, C:0.07, G:0.06, T:0.55
Consensus pattern (42 bp):
TTATTATTAGTATAGCTATTATTATGTATTATACCATTACAT
Found at i:4213967 original size:131 final size:130
Alignment explanation
Indices: 4213724--4214055 Score: 447
Period size: 131 Copynumber: 2.6 Consensus size: 130
4213714 AAAAACCGAG
** * *
4213724 ACCCAGCAC-AGTAGGGCACGATTCCTCGAATTTTTAGACATTGAACATTGCC-TTGTTTT--AG
1 ACCCAGCACGA-TAGGGCACGATTCCTCGAATTGCTAAACATCGAACATTGCCTTTGTTTTAAAG
** * * * *
4213785 AATTTAGAAAACATGAGTGAAATTCTAAAGGGATATTCGATTATTTTGAACAAACGGGAAATTGC
65 AATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCAATTATTTTGAACAAACAGGAAATTGC
4213850 A
130 A
* * *
4213851 ACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTTCCTTTGTTTTAAAGA
1 ACCCAGCACGATAGGGCACGATTCCTCGAATTGCTAAACATCGAACATTGCCTTTGTTTTAAAGA
*
4213916 ATTTTTAAAGACGTGAGTGAAATTCCAAAGGAATATTCAATTATTTTGAACAAACAGGAAATTGC
66 ATTTTTAAA-ACATGAGTGAAATTCCAAAGGAATATTCAATTATTTTGAACAAACAGGAAATTGC
4213981 A
130 A
* * * * *
4213982 ACCCAGCACGATAAGGCACGATTCTTTGAATTGCTAAACATCGAACATGGCCTTCGTTTTAAAGA
1 ACCCAGCACGATAGGGCACGATTCCTCGAATTGCTAAACATCGAACATTGCCTTTGTTTTAAAGA
4214047 ATTTTTAAA
66 ATTTTTAAA
4214056 TGGATAATTA
Statistics
Matches: 178, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
127 43 0.24
128 8 0.04
130 10 0.06
131 117 0.66
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (130 bp):
ACCCAGCACGATAGGGCACGATTCCTCGAATTGCTAAACATCGAACATTGCCTTTGTTTTAAAGA
ATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCAATTATTTTGAACAAACAGGAAATTGCA
Found at i:4215276 original size:24 final size:24
Alignment explanation
Indices: 4215249--4215295 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
4215239 AAAATGACAA
4215249 TGATAACGA-AAACAATAATAATAG
1 TGATAAC-ATAAACAATAATAATAG
*
4215273 TGATAACATAAATAATAATAATA
1 TGATAACATAAACAATAATAATA
4215296 TAAAATGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.60, C:0.06, G:0.09, T:0.26
Consensus pattern (24 bp):
TGATAACATAAACAATAATAATAG
Found at i:4215362 original size:25 final size:24
Alignment explanation
Indices: 4215333--4215386 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
4215323 ATGCATTGAG
*
4215333 ATATATACGTAATAATAGAAATAAA
1 ATATATACGTAATAATA-AAAGAAA
* * *
4215358 ATATATATGTAGTATTAAAAGAAA
1 ATATATACGTAATAATAAAAGAAA
4215382 ATATA
1 ATATA
4215387 CATAATACGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.31
Consensus pattern (24 bp):
ATATATACGTAATAATAAAAGAAA
Found at i:4215559 original size:10 final size:10
Alignment explanation
Indices: 4215541--4215623 Score: 53
Period size: 10 Copynumber: 8.3 Consensus size: 10
4215531 ATGAAGTATA
4215541 ATATATAAAT
1 ATATATAAAT
*
4215551 ATATTTAAAGT
1 ATATATAAA-T
* *
4215562 ATGTACATAAT
1 ATATATA-AAT
* *
4215573 ATATCTATAT
1 ATATATAAAT
*
4215583 AT-TAGAAAT
1 ATATATAAAT
*
4215592 ATA-ATATAT
1 ATATATAAAT
*
4215601 ATATATATAT
1 ATATATAAAT
*
4215611 ATATATATAT
1 ATATATAAAT
4215621 ATA
1 ATA
4215624 AACATATACA
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
9 13 0.23
10 31 0.55
11 10 0.18
12 2 0.04
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (10 bp):
ATATATAAAT
Found at i:4215583 original size:2 final size:2
Alignment explanation
Indices: 4215571--4215623 Score: 65
Period size: 2 Copynumber: 27.5 Consensus size: 2
4215561 TATGTACATA
* * *
4215571 AT AT AT CT AT AT AT -T AG AA AT AT A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4215611 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
4215624 AACATATACA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
1 2 0.05
2 42 0.95
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (2 bp):
AT
Found at i:4217262 original size:42 final size:42
Alignment explanation
Indices: 4217209--4217289 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
4217199 GTGACTTCAA
* *
4217209 TCAATTTCACTGAAACTTGAAGGAGACCTGCTGTAGCTTCGC
1 TCAATTCCACTGAAACTTCAAGGAGACCTGCTGTAGCTTCGC
* *
4217251 TCAATTCCACTGAAACTTCAAGGAGATCTGCTGTGGCTT
1 TCAATTCCACTGAAACTTCAAGGAGACCTGCTGTAGCTT
4217290 TTAGCCGCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (42 bp):
TCAATTCCACTGAAACTTCAAGGAGACCTGCTGTAGCTTCGC
Found at i:4217637 original size:85 final size:86
Alignment explanation
Indices: 4217463--4217669 Score: 326
Period size: 85 Copynumber: 2.4 Consensus size: 86
4217453 ATCTGTGATT
* * * * * * *
4217463 TTCAGCCTATTACCCTATTGCTTAGGGGGTTAAGGTTCTTCGTCTTCGATCTGCTCCGCTACCGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTATTCGTCTTCGATCTGCTCCACTACCAC
*
4217528 TTAGGGAGATAAGATCTGTAA
66 TTAGGGAGATAAGATCTGCAA
4217549 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTATTCGTCTTCGATCTGCTCCACTA-CAC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTATTCGTCTTCGATCTGCTCCACTACCAC
4217613 TTAGGGAGATAAGATCTGCAA
66 TTAGGGAGATAAGATCTGCAA
*
4217634 TTCAACCTGTTACCCTACTGCTTAGGGTTTTAAGGT
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGT
4217670 CTGCAATTCG
Statistics
Matches: 112, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
85 57 0.51
86 55 0.49
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (86 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTATTCGTCTTCGATCTGCTCCACTACCAC
TTAGGGAGATAAGATCTGCAA
Found at i:4217856 original size:132 final size:131
Alignment explanation
Indices: 4217634--4218119 Score: 559
Period size: 132 Copynumber: 3.7 Consensus size: 131
4217624 AGATCTGCAA
* * * *
4217634 TTCAACCTGTTACCCTACTGCTTAGGGTTTTAAGGTCTGCAATTCGGTCTGTTACCCTACTGCTT
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCTGAAATTCGCTCTGTTACCCTACTGCTT
* * *
4217699 AGGGATTTAAGACCCTTCGTCTTTGATCTGCTCCACTGCAACTTCAGGAAGGCAAGACCTGTGAT
66 AGGGATTAAAGACCCATCCTCTTTGATCTGCTCCACTGCAACTTCAGGAAGGCAAGACCTGTGAT
4217764 T
131 T
4217765 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGG-CTTGTAAATTCAGCT-TGTTACCCTACTG
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTC-TG-AAATTC-GCTCTGTTACCCTACTG
* * * ** * *
4217828 CTTAAGGGGTTAAAG-CCCATCACT-TTTGATCTGTTTCC-CTACTGCTT-AGG--GGTTAAGAT
63 CTT-AGGGATTAAAGACCCATC-CTCTTTGATCTG-CTCCACTGCAACTTCAGGAAGG-CAAGAC
*
4217887 CTGT-AAT
124 CTGTGATT
* * * *
4217894 TT-AACCTGTTACCCTACTGCTTAGGGTTTTAAGGTCTGCAATTCGGTCTGTTACCCTACTGCTT
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCTGAAATTCGCTCTGTTACCCTACTGCTT
* * *
4217958 AGGGATTTAAGACCCTTCGTCTTTGATCTGCTCCACTGCAACTTCAGGAAGGCAAGACCTGTGAT
66 AGGGATTAAAGACCCATCCTCTTTGATCTGCTCCACTGCAACTTCAGGAAGGCAAGACCTGTGAT
4218023 T
131 T
4218024 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGG-CTTGTAAATTCAGCT-TGTTACCCTACTG
1 TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTC-TG-AAATTC-GCTCTGTTACCCTACTG
*
4218087 CTTAGGGGGTTAAAG-CCCATCACT-TTTGATCTG
63 CTTA-GGGATTAAAGACCCATC-CTCTTTGATCTG
4218120 TTTCCCTACT
Statistics
Matches: 295, Mismatches: 38, Indels: 43
0.78 0.10 0.11
Matches are distributed among these distances:
126 15 0.05
127 41 0.14
128 35 0.12
129 15 0.05
130 16 0.05
131 70 0.24
132 77 0.26
133 26 0.09
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (131 bp):
TTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGTCTGAAATTCGCTCTGTTACCCTACTGCTT
AGGGATTAAAGACCCATCCTCTTTGATCTGCTCCACTGCAACTTCAGGAAGGCAAGACCTGTGAT
T
Found at i:4218015 original size:259 final size:259
Alignment explanation
Indices: 4217612--4218220 Score: 1071
Period size: 259 Copynumber: 2.3 Consensus size: 259
4217602 CTCCACTACA
* *
4217612 CTTAGGGAGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGTTTTAAGGTCTGCAAT
1 CTTAGGG-GTTAAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGTTTTAAGGTCTGCAAT
4217677 TCGGTCTGTTACCCTACTGCTTAGGGATTTAAGACCCTTCGTCTTTGATCTGCTCCACTGCAACT
65 TCGGTCTGTTACCCTACTGCTTAGGGATTTAAGACCCTTCGTCTTTGATCTGCTCCACTGCAACT
4217742 TCAGGAAGGCAAGACCTGTGATTTTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCTTGTAA
130 TCAGGAAGGCAAGACCTGTGATTTTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCTTGTAA
4217807 ATTCAGCTTGTTACCCTACTGCTTAAGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTG
195 ATTCAGCTTGTTACCCTACTGCTTAAGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTG
*
4217872 CTTAGGGGTTAAGATCTGTAATTTAACCTGTTACCCTACTGCTTAGGGTTTTAAGGTCTGCAATT
1 CTTAGGGGTTAAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGTTTTAAGGTCTGCAATT
4217937 CGGTCTGTTACCCTACTGCTTAGGGATTTAAGACCCTTCGTCTTTGATCTGCTCCACTGCAACTT
66 CGGTCTGTTACCCTACTGCTTAGGGATTTAAGACCCTTCGTCTTTGATCTGCTCCACTGCAACTT
4218002 CAGGAAGGCAAGACCTGTGATTTTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAA
131 CAGGAAGGCAAGACCTGTGATTTTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAA
*
4218067 TTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTG
196 TTCAGCTTGTTACCCTACTGCTTAAGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTG
* ** *
4218131 CTTAGGGGGTTAAGATCTGTAAACTCGGCCTGTTACCCTACTGCTTAGGG-GTTAAGGTC--CAT
1 CTTA-GGGGTTAAGATCTGT-AATTCAACCTGTTACCCTACTGCTTAGGGTTTTAAGGTCTGCA-
* *
4218193 ATTCGATCTGTTTCCCTACTGCTTAGGG
63 ATTCGGTCTGTTACCCTACTGCTTAGGG
4218221 TGATAAGATC
Statistics
Matches: 335, Mismatches: 11, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
258 2 0.01
259 278 0.83
260 30 0.09
261 25 0.07
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.34
Consensus pattern (259 bp):
CTTAGGGGTTAAGATCTGTAATTCAACCTGTTACCCTACTGCTTAGGGTTTTAAGGTCTGCAATT
CGGTCTGTTACCCTACTGCTTAGGGATTTAAGACCCTTCGTCTTTGATCTGCTCCACTGCAACTT
CAGGAAGGCAAGACCTGTGATTTTCAACCTATTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAA
TTCAGCTTGTTACCCTACTGCTTAAGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTG
Found at i:4218092 original size:215 final size:211
Alignment explanation
Indices: 4217859--4218362 Score: 480
Period size: 215 Copynumber: 2.3 Consensus size: 211
4217849 ACTTTTGATC
* ** **
4217859 TGTTTCCCTACTGCTTAGGGGTTAAG-ATCTGTAATTTAACCTGTTACCCTACTGCTTAGGGTTT
1 TGTTACCCTACTGCTTAGGGGTTAAGCATCACT--TTTAACCTGTTACCCTACTGCTTAGGGGGT
* * * * * * * * *
4217923 TAAGGTCTG-CAATTCGGTCTGTTACCCTACTGCTTAGGGATTTAAGACCCTTCGTCTTTGATCT
64 TAAGATCTGTAAACTCGGCCTGTTACCCTACTGCTTAGGG-GTTAAG---CTCCATATTCGATCT
* * * *
4217987 G-CTCCACTGCAACTTCAGGAAGGCAAGACCTGT-GATTTTCAACCTATTACCCTACTGCTTA-G
125 GTCTCC-CTACAACTT-AGGAAGACAAGACCTGTAAATCTTCAACCTATTACCCTACTGCTTAGG
4218049 GGGTTTAAGGCTTGTAAATTCAGCT
188 GGGTTT-AGGCTTGTAAATTCAGCT
* * *
4218074 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTGCTTA-GGGGTT-AAG--CATCACTTTTAACCTGTTACCCTACTGCTTAGGGG
*
4218139 GTTAAGATCTGTAAACTCGGCCTGTTACCCTACTGCTTAGGGGTTAAGGTCCATATTCGATCTGT
62 GTTAAGATCTGTAAACTCGGCCTGTTACCCTACTGCTTAGGGGTTAAGCTCCATATTCGATCTGT
* ** ** * * * *
4218204 TTCCCTACTGCTTAGGGTGATAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGT
127 CTCCCTACAACTTAGGAAGACAAGACCTGTAAATCTTCAACCTATTACCCTACTGCTTAGGGGGT
* *
4218269 TTAGGCTTGTGAATTCGGCT
192 TTAGGCTTGTAAATTCAGCT
** * *
4218289 TGTTACCCTACTGCTTAGGGGTTAAAGC-TCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTGCTTAGGGGTT-AAGCATCA-C-T-TTTAACCTGTTACCCTACTGCTTAGGGG
4218353 GTTAAGATCT
62 GTTAAGATCT
4218363 TCATCTTCAA
Statistics
Matches: 243, Mismatches: 34, Indels: 25
0.80 0.11 0.08
Matches are distributed among these distances:
211 3 0.01
212 2 0.01
213 1 0.00
214 59 0.24
215 90 0.37
216 16 0.07
217 3 0.01
218 38 0.16
219 27 0.11
220 4 0.02
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (211 bp):
TGTTACCCTACTGCTTAGGGGTTAAGCATCACTTTTAACCTGTTACCCTACTGCTTAGGGGGTTA
AGATCTGTAAACTCGGCCTGTTACCCTACTGCTTAGGGGTTAAGCTCCATATTCGATCTGTCTCC
CTACAACTTAGGAAGACAAGACCTGTAAATCTTCAACCTATTACCCTACTGCTTAGGGGGTTTAG
GCTTGTAAATTCAGCT
Found at i:4218266 original size:128 final size:128
Alignment explanation
Indices: 4218117--4218532 Score: 480
Period size: 128 Copynumber: 3.2 Consensus size: 128
4218107 CACTTTTGAT
* *
4218117 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAACTCGGCCTGTTACCCTACTGCTTAGGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCTACTGCTTAGGGG
* * * * *
4218182 TTAAGGTCCATATTCGATCTGTTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATCTTCAGC
66 TTAAGCTCCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAAC
* * * *
4218245 CTGTTACCCTACTGCTTAGGGGGTTTAG-GCTTGTGAATTCGGCTTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATC-TGTAAATTCGGCCTGTTACCCTACTGCTTAGGG
*
4218309 GTTAAAGCTCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTCA
65 GTT-AAGCTC--CATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCA
*
4218372 AT
127 AC
* * * * * * * *
4218374 CTGTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAATTCGGTCTGTTACTCTACCGATTAGAGG
1 CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCTACTGCTTAG-GG
* * * * * *
4218438 TTTAAGACCCTTCGTCTTCGATCTATTTCCCTACTGCTCAGGGGGTTAAGATCTGTAAATCTTTA
65 GTTAAG---CTCCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCA
4218503 AC
127 AC
*
4218505 CTGTTACCCTACTGCTTAGGGGTTTAAG
1 CTGTTACCCTACTGCTTAGGGGGTTAAG
4218533 GCTTGTGAAT
Statistics
Matches: 241, Mismatches: 36, Indels: 19
0.81 0.12 0.06
Matches are distributed among these distances:
127 1 0.00
128 84 0.35
129 81 0.34
130 3 0.01
131 72 0.30
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (128 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCTACTGCTTAGGGG
TTAAGCTCCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAAC
Found at i:4218341 original size:43 final size:43
Alignment explanation
Indices: 4217472--4218532 Score: 300
Period size: 43 Copynumber: 24.6 Consensus size: 43
4217462 TTTCAGCCTA
* * * *
4217472 TTACCCTATTGCTTAGGGGGTTAAGGTTCTTCGTCTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAA-GATCGTCATCTTCGATCTG
* * * * * * *
4217516 CT-CCGCTACCGCTTAGGGAGATAAGATCTGT-A-ATTCAACCTG
1 TTACC-CTACTGCTTAGGGGGTTAAGATC-GTCATCTTCGATCTG
* * ** *
4217558 TTACCCTACTGCTTAGGGGTTTAAGGTTATTCGTCTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAA-GATCGTCATCTTCGATCTG
* * * * * * *
4217602 CT-CCACTAC-ACTTAGGGAGATAAGATC-TGCA-ATTCAACCTG
1 TTACC-CTACTGCTTAGGGGGTTAAGATCGT-CATCTTCGATCTG
** * * *
4217643 TTACCCTACTGCTTAGGGTTTTAAGGTC-TGCA-ATTCGGTCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCGT-CATCTTCGATCTG
** * * * *
4217685 TTACCCTACTGCTTAGGGATTTAAGACCCTTCGTCTTTGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAGA-TCGTCATCTTCGATCTG
* * ** * * * * * * * *
4217729 CT-CCACTGCAACTTCAGGAAGG-CAAGACCTGTGATTTTCAACCTA
1 TTACC-CTACTGCTT-AGG-GGGTTAAGATC-GTCATCTTCGATCTG
* * * ** *
4217774 TTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTC-AGCTTG
1 TTACCCTACTGCTTAGGGGGTTAA-GATCGTCATCTTCGATC-TG
* ** * *
4217817 TTACCCTACTGCTTAAGGGGTTAAAGCCCATCA-CTTTTGATCTG
1 TTACCCTACTGCTTAGGGGGTT-AAGATCGTCATC-TTCGATCTG
* * * *
4217861 TTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAT-TT-AACCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATC-GTCATCTTCGATCTG
** * * *
4217902 TTACCCTACTGCTTAGGGTTTTAAGGTC-TGCA-ATTCGGTCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCGT-CATCTTCGATCTG
** * * * *
4217944 TTACCCTACTGCTTAGGGATTTAAGACCCTTCGTCTTTGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAGA-TCGTCATCTTCGATCTG
* * ** * * * * * * * *
4217988 CT-CCACTGCAACTTCAGGAAGG-CAAGACCTGTGATTTTCAACCTA
1 TTACC-CTACTGCTT-AGG-GGGTTAAGATC-GTCATCTTCGATCTG
* * * ** *
4218033 TTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTC-AGCTTG
1 TTACCCTACTGCTTAGGGGGTTAA-GATCGTCATCTTCGATC-TG
** * *
4218076 TTACCCTACTGCTTAGGGGGTTAAAGCCCATCA-CTTTTGATCTG
1 TTACCCTACTGCTTAGGGGGTT-AAGATCGTCATC-TTCGATCTG
* * * **
4218120 TTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAAC-TCGGCCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATC-GTCATCTTCGATCTG
* *
4218163 TTACCCTACTGCTTA-GGGGTTAAGGTC--CATATTCGATCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCGTCATCTTCGATCTG
* * * * *
4218203 TTTCCCTACTGCTTAGGGTGATAAGATCTGTAAATCTTC-AGCCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATC-GT-CATCTTCGA-TCTG
* * * * * *
4218248 TTACCCTACTGCTTAGGGGGTTTAGGCTTGTGA-ATTCG-GCTTG
1 TTACCCTACTGCTTAGGGGG-TTAAGATCGTCATCTTCGATC-TG
* *
4218291 TTACCCTACTGCTTA-GGGGTTAAAGCTCATCATCTTCGATCTG
1 TTACCCTACTGCTTAGGGGGTT-AAGATCGTCATCTTCGATCTG
* * *
4218334 TTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCAATCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCGTCATCTTCGATCTG
* * * * *
4218377 TTTCCCTACTGCTTAGGGAGATAAGATC-TGCA-ATTCGGTCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATCGT-CATCTTCGATCTG
* * * * * * * * *
4218419 TTACTCTACCGATTAGAGGTTTAAGACCCTTCGTCTTCGATCTA
1 TTACCCTACTGCTTAGGGGGTTAAGA-TCGTCATCTTCGATCTG
* * * ** *
4218463 TTTCCCTACTGCTCAGGGGGTTAAGATCTGTAAATCTTTAACCTG
1 TTACCCTACTGCTTAGGGGGTTAAGATC-GT-CATCTTCGATCTG
*
4218508 TTACCCTACTGCTTAGGGGTTTAAG
1 TTACCCTACTGCTTAGGGGGTTAAG
4218533 GCTTGTGAAT
Statistics
Matches: 725, Mismatches: 224, Indels: 135
0.67 0.21 0.12
Matches are distributed among these distances:
39 1 0.00
40 21 0.03
41 45 0.06
42 171 0.24
43 208 0.29
44 165 0.23
45 106 0.15
46 8 0.01
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (43 bp):
TTACCCTACTGCTTAGGGGGTTAAGATCGTCATCTTCGATCTG
Found at i:4218384 original size:86 final size:86
Alignment explanation
Indices: 4217472--4218532 Score: 388
Period size: 86 Copynumber: 12.3 Consensus size: 86
4217462 TTTCAGCCTA
* * * * *
4217472 TTACCCTATTGCTTAGGGGGTTAAGGTTCTTCGTCTTCGATCTG-CTCCGCTACCGCTTAGGGAG
1 TTACCCTACTGCTTAGGGGGTTAA-G-TCTTCATATTCGATCTGTTTCC-CTACTGCTTAGGG-G
* *
4217536 AT-AAGATCTGTAA--TTCAACCTG
62 TTAAAGATCTGTAATCTTCGACCTG
* * * * * *
4217558 TTACCCTACTGCTTAGGGGTTTAAGGTTATTCGTCTTCGATCTG-CTCCACTAC-ACTTAGGGAG
1 TTACCCTACTGCTTAGGGGGTTAA-G-TCTTCATATTCGATCTGTTTCC-CTACTGCTTAGGG-G
* * *
4217621 AT-AAGATCTGCAA--TTCAACCTG
62 TTAAAGATCTGTAATCTTCGACCTG
** * * * * *
4217643 TTACCCTACTGCTTAGGGTTTTAAGGTCTGCA-ATTCGGTCTGTTACCCTACTGCTTAGGGATTT
1 TTACCCTACTGCTTAGGGGGTTAA-GTCTTCATATTCGATCTGTTTCCCTACTGCTTAGGGGTTA
* ** * *
4217707 AAGACCCT-TCGTCTTTGATCTG
65 AAGA-TCTGTAATCTTCGACCTG
* * ** * * * * * * * * *
4217729 CT-CCACTGCAACTTCAGGAAGG-CAAGACCTGTGATTTTCAACCTATTACCCTACTGCTTAGGG
1 TTACC-CTACTGCTT-AGG-GGGTTAAG-TCT-TCATATTCGATCTGTTTCCCTACTGCTTAGGG
* * * *
4217792 GTTTAAG-GCTTGTAA-ATTC-AGCTTG
61 GTTAAAGATC-TGTAATCTTCGA-CCTG
* * * *
4217817 TTACCCTACTGCTTAAGGGGTTAAAGCCCATCACT-TTTGATCTGTTTCCCTACTGCTTAGGGGT
1 TTACCCTACTGCTTAGGGGGTT-AAG-TCTTCA-TATTCGATCTGTTTCCCTACTGCTTAGGGGT
*
4217881 T-AAGATCTGTAAT-TT-AACCTG
63 TAAAGATCTGTAATCTTCGACCTG
** * * * * *
4217902 TTACCCTACTGCTTAGGGTTTTAAGGTCTGCA-ATTCGGTCTGTTACCCTACTGCTTAGGGATTT
1 TTACCCTACTGCTTAGGGGGTTAA-GTCTTCATATTCGATCTGTTTCCCTACTGCTTAGGGGTTA
* ** * *
4217966 AAGACCCT-TCGTCTTTGATCTG
65 AAGA-TCTGTAATCTTCGACCTG
* * ** * * * * * * * * *
4217988 CT-CCACTGCAACTTCAGGAAGG-CAAGACCTGTGATTTTCAACCTATTACCCTACTGCTTAGGG
1 TTACC-CTACTGCTT-AGG-GGGTTAAG-TCT-TCATATTCGATCTGTTTCCCTACTGCTTAGGG
* * * *
4218051 GTTTAAG-GCTTGTAA-ATTC-AGCTTG
61 GTTAAAGATC-TGTAATCTTCGA-CCTG
* * *
4218076 TTACCCTACTGCTTAGGGGGTTAAAGCCCATCACT-TTTGATCTGTTTCCCTACTGCTTAGGGGG
1 TTACCCTACTGCTTAGGGGGTT-AAG-TCTTCA-TATTCGATCTGTTTCCCTACTGCTTA-GGGG
* *
4218140 TT-AAGATCTGTAAAC-TCGGCCTG
62 TTAAAGATCTGTAATCTTCGACCTG
*
4218163 TTACCCTACTGCTTA-GGGGTTAAGGTC--CATATTCGATCTGTTTCCCTACTGCTTA-GGGTGA
1 TTACCCTACTGCTTAGGGGGTTAA-GTCTTCATATTCGATCTGTTTCCCTACTGCTTAGGGGTTA
4218224 TAAGATCTGTAAATCTTC-AGCCTG
65 -AAGATCTGT-AATCTTCGA-CCTG
* * * * *
4218248 TTACCCTACTGCTTAGGGGGTTTAGGCTT-GTGAATTCG-GCTTGTTACCCTACTGCTTAGGGGT
1 TTACCCTACTGCTTAGGGGGTTAAGTCTTCAT--ATTCGATC-TGTTTCCCTACTGCTTAGGGGT
* * * *
4218311 TAAAGCTC-ATCATCTTCGATCTG
63 TAAAGATCTGTAATCTTCGACCTG
* * * *
4218334 TTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCAATCTGTTTCCCTACTGCTTAGGGAGAT
1 TTACCCTACTGCTTAGGGGGTTAAG-TCTTCATATTCGATCTGTTTCCCTACTGCTTAGGG-GTT
* **
4218399 -AAGATCTGCAA--TTCGGTCTG
64 AAAGATCTGTAATCTTCGACCTG
* * * * * * * * * *
4218419 TTACTCTACCGATTAGAGGTTTAAGACCCTTCGTCTTCGATCTATTTCCCTACTGCTCAGGGGGT
1 TTACCCTACTGCTTAGGGGGTTAAG--TCTTCATATTCGATCTGTTTCCCTACTGCTTA-GGGGT
**
4218484 T-AAGATCTGTAAATCTTTAACCTG
63 TAAAGATCTGT-AATCTTCGACCTG
*
4218508 TTACCCTACTGCTTAGGGGTTTAAG
1 TTACCCTACTGCTTAGGGGGTTAAG
4218533 GCTTGTGAAT
Statistics
Matches: 732, Mismatches: 173, Indels: 137
0.70 0.17 0.13
Matches are distributed among these distances:
81 4 0.01
82 1 0.00
83 73 0.10
84 30 0.04
85 141 0.19
86 201 0.27
87 115 0.16
88 72 0.10
89 95 0.13
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (86 bp):
TTACCCTACTGCTTAGGGGGTTAAGTCTTCATATTCGATCTGTTTCCCTACTGCTTAGGGGTTAA
AGATCTGTAATCTTCGACCTG
Found at i:4218475 original size:215 final size:216
Alignment explanation
Indices: 4218011--4218434 Score: 556
Period size: 214 Copynumber: 2.0 Consensus size: 216
4218001 TCAGGAAGGC
* * *
4218011 AAGACCTGT-GATTTTCAACCTATTACCCTACTGCTTA-GGGGTTTAAGGCTTGTAAATTCAGCT
1 AAGACCTGTAAATCTTCAGCCTATTACCCTACTGCTTAGGGGGTTTAAGGCTTGTAAATTCAGCT
*
4218074 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACTTTTGATCTGTTTCCCTACTGCTTAGGGG
66 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACTTTCGATCTGTTTCCCTACTGCTTAGGGG
** * *
4218139 GTTAAGATCTGTAAACTCGGCCTGTTACCCTACTGCTTAGGGGTTAAGGTCCATATTCGATCTGT
131 GTTAAGATCTGTAAACTCAACCTGTTACCCTACTGCTTAGGGGATAAGATCCATATTCGATCTGT
* * *
4218204 TTCCCTACTGCTTAGGGTGAT
196 TACCCTACCGATTAGGGTGAT
* * * *
4218225 AAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTT-AGGCTTGTGAATTCGGCT
1 AAGACCTGTAAATCTTCAGCCTATTACCCTACTGCTTAGGGGGTTTAAGGCTTGTAAATTCAGCT
*
4218289 TGTTACCCTACTGCTTA-GGGGTTAAAGCTCATCA-TCTTCGATCTGTTTCCCTACTGCTTAGGG
66 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACT-TTCGATCTGTTTCCCTACTGCTTAGGG
* * * * *
4218352 GGTTAAGATCT-TCATCTTCAATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGG
130 GGTTAAGATCTGTAAAC-TCAACCTGTTACCCTACTGCTTAGGG-GATAAGATC--CATATTCGA
*
4218415 TCTGTTACTCTACCGATTAG
191 TCTGTTACCCTACCGATTAG
4218435 AGGTTTAAGA
Statistics
Matches: 181, Mismatches: 22, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
213 4 0.02
214 83 0.46
215 64 0.35
216 28 0.15
217 2 0.01
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (216 bp):
AAGACCTGTAAATCTTCAGCCTATTACCCTACTGCTTAGGGGGTTTAAGGCTTGTAAATTCAGCT
TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCACTTTCGATCTGTTTCCCTACTGCTTAGGGG
GTTAAGATCTGTAAACTCAACCTGTTACCCTACTGCTTAGGGGATAAGATCCATATTCGATCTGT
TACCCTACCGATTAGGGTGAT
Found at i:4218705 original size:61 final size:64
Alignment explanation
Indices: 4218589--4218713 Score: 186
Period size: 61 Copynumber: 2.0 Consensus size: 64
4218579 CCATGTATCT
*
4218589 ATGCTTATGTCAAATTATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
4218653 ATGCTTTATGTCAACTAATTAGGATG-T-T-AT-GAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
4218714 TTACTGTATA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
61 30 0.53
62 2 0.04
63 1 0.02
64 5 0.09
65 19 0.33
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.34
Consensus pattern (64 bp):
ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:4223030 original size:6 final size:6
Alignment explanation
Indices: 4223012--4223050 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
4223002 AATGCAAATG
4223012 ATGC-A ATGC-A ATGCAA ATGCAA ATGCAA ATGCAA ATGCA
1 ATGCAA ATGCAA ATGCAA ATGCAA ATGCAA ATGCAA ATGCA
4223051 TGGAATGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 9 0.27
6 24 0.73
ACGTcount: A:0.46, C:0.18, G:0.18, T:0.18
Consensus pattern (6 bp):
ATGCAA
Found at i:4226264 original size:6 final size:6
Alignment explanation
Indices: 4226246--4226284 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
4226236 AATGCAAATG
4226246 ATGC-A ATGC-A ATGCAA ATGCAA ATGCAA ATGCAA ATGCA
1 ATGCAA ATGCAA ATGCAA ATGCAA ATGCAA ATGCAA ATGCA
4226285 TGGAATGAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 9 0.27
6 24 0.73
ACGTcount: A:0.46, C:0.18, G:0.18, T:0.18
Consensus pattern (6 bp):
ATGCAA
Found at i:4228348 original size:24 final size:24
Alignment explanation
Indices: 4228321--4228367 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
4228311 AAAATGACAA
4228321 TGATAACGA-AAACAATAATAATAG
1 TGATAAC-ATAAACAATAATAATAG
*
4228345 TGATAACATAAATAATAATAATA
1 TGATAACATAAACAATAATAATA
4228368 TAAAATGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.60, C:0.06, G:0.09, T:0.26
Consensus pattern (24 bp):
TGATAACATAAACAATAATAATAG
Found at i:4228434 original size:25 final size:24
Alignment explanation
Indices: 4228405--4228458 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
4228395 ATGCATTGAG
*
4228405 ATATATACGTAATAATAGAAATAAA
1 ATATATACGTAATAATA-AAAGAAA
* * *
4228430 ATATATATGTAGTATTAAAAGAAA
1 ATATATACGTAATAATAAAAGAAA
4228454 ATATA
1 ATATA
4228459 CATAATACGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.31
Consensus pattern (24 bp):
ATATATACGTAATAATAAAAGAAA
Found at i:4230460 original size:2 final size:2
Alignment explanation
Indices: 4230453--4230490 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
4230443 TATTATAAAG
4230453 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4230491 ATAGTGTATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4234661 original size:39 final size:39
Alignment explanation
Indices: 4234607--4234750 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
4234597 GAATGTTCGA
4234607 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
4234646 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
4234685 ATGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
4234724 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
4234751 CTTTGTGCGG
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 85 0.91
40 8 0.09
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:4234697 original size:78 final size:79
Alignment explanation
Indices: 4234608--4234790 Score: 260
Period size: 78 Copynumber: 2.3 Consensus size: 79
4234598 AATGTTCGAG
4234608 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
4234672 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* * *
4234686 TGATATCCGGGCTAAGCCCAAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
4234751 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
4234765 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
4234791 GTTTGAACGA
Statistics
Matches: 92, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
78 52 0.57
79 32 0.35
80 8 0.09
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:4240641 original size:27 final size:27
Alignment explanation
Indices: 4240610--4240677 Score: 127
Period size: 27 Copynumber: 2.5 Consensus size: 27
4240600 ATAATTTATA
4240610 ATTTTATTTCAATTCGACCCTGGGTTC
1 ATTTTATTTCAATTCGACCCTGGGTTC
4240637 ATTTTATTTCAATTCGACCCTGGGTTC
1 ATTTTATTTCAATTCGACCCTGGGTTC
*
4240664 ATTTAATTTCAATT
1 ATTTTATTTCAATT
4240678 TTTTTATAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (27 bp):
ATTTTATTTCAATTCGACCCTGGGTTC
Found at i:4240815 original size:13 final size:13
Alignment explanation
Indices: 4240799--4240862 Score: 62
Period size: 13 Copynumber: 5.0 Consensus size: 13
4240789 TCGTTCTCAC
4240799 ATTTTTATTTATT
1 ATTTTTATTTATT
4240812 ATTTTTATTTATT
1 ATTTTTATTTATT
*
4240825 ATTCTCT-TTTATT
1 ATT-TTTATTTATT
**
4240838 ATGCTT-TTT-TT
1 ATTTTTATTTATT
4240849 ATTTTTCATTTATT
1 ATTTTT-ATTTATT
4240863 TTGCTTATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
11 6 0.15
12 4 0.10
13 27 0.66
14 4 0.10
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.73
Consensus pattern (13 bp):
ATTTTTATTTATT
Found at i:4244686 original size:19 final size:19
Alignment explanation
Indices: 4244662--4244706 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
4244652 CGCCTTTTTT
4244662 TGCATT-CATTTCATTCATA
1 TGCATTACATTTCA-TCATA
*
4244681 TGCATTATATTTCATCATA
1 TGCATTACATTTCATCATA
*
4244700 TACATTA
1 TGCATTA
4244707 AGTTTCATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.31, C:0.18, G:0.04, T:0.47
Consensus pattern (19 bp):
TGCATTACATTTCATCATA
Found at i:4244714 original size:19 final size:19
Alignment explanation
Indices: 4244669--4244706 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
4244659 TTTTGCATTC
*
4244669 ATTTCATTCATATGCATTAT
1 ATTTCA-TCATATACATTAT
4244689 ATTTCATCATATACATTA
1 ATTTCATCATATACATTA
4244707 AGTTTCATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.34, C:0.16, G:0.03, T:0.47
Consensus pattern (19 bp):
ATTTCATCATATACATTAT
Found at i:4248424 original size:35 final size:36
Alignment explanation
Indices: 4248378--4248447 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 36
4248368 TCTGAGTAAG
4248378 TATTCTTTTATTC-TTCATTCCATTCATAACCAAAA
1 TATTCTTTTATTCTTTCATTCCATTCATAACCAAAA
4248413 TATTCTTTTATTCTTTTCATTCCATTCATAACCAA
1 TATTCTTTTATTC-TTTCATTCCATTCATAACCAA
4248448 TCATATGGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
35 13 0.39
37 20 0.61
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.49
Consensus pattern (36 bp):
TATTCTTTTATTCTTTCATTCCATTCATAACCAAAA
Found at i:4252994 original size:11 final size:12
Alignment explanation
Indices: 4252978--4253041 Score: 60
Period size: 13 Copynumber: 5.2 Consensus size: 12
4252968 AGATAAATAT
4252978 TATTTTATTA-A
1 TATTTTATTAGA
*
4252989 TATTTTAATAAGA
1 TATTTT-ATTAGA
*
4253002 TATTTTAATAAGA
1 TATTTT-ATTAGA
*
4253015 TATTTTATTA-T
1 TATTTTATTAGA
4253026 TATTTTATTAGTA
1 TATTTTATTAG-A
4253039 TAT
1 TAT
4253042 AAAGAAAGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
11 16 0.36
12 6 0.13
13 23 0.51
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.58
Consensus pattern (12 bp):
TATTTTATTAGA
Found at i:4253006 original size:13 final size:13
Alignment explanation
Indices: 4252988--4253021 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
4252978 TATTTTATTA
4252988 ATATTTTAATAAG
1 ATATTTTAATAAG
4253001 ATATTTTAATAAG
1 ATATTTTAATAAG
4253014 ATATTTTA
1 ATATTTTA
4253022 TTATTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (13 bp):
ATATTTTAATAAG
Found at i:4254316 original size:51 final size:51
Alignment explanation
Indices: 4254240--4254359 Score: 204
Period size: 51 Copynumber: 2.4 Consensus size: 51
4254230 AACCAAGTTA
* *
4254240 TCCGGATGAAATATGAAACTCTTGTTGAAGCTAGAGCAATAAAGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAAT
4254291 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAAT
* *
4254342 TCCAGATGAAGTATGAAG
1 TCCGGATGAAATATGAAG
4254360 TAAGTTTCAG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.40, C:0.12, G:0.22, T:0.26
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTTGAAGCTAGAGCAACAAAGTAATAAT
Found at i:4255138 original size:21 final size:21
Alignment explanation
Indices: 4255114--4255185 Score: 58
Period size: 21 Copynumber: 3.2 Consensus size: 21
4255104 CTTTCTGAAA
4255114 TGAAATGTGTAAGACCATGGT
1 TGAAATGTGTAAGACCATGGT
* *
4255135 TGAAA-G-ATACCATGACAACATGAT
1 TGAAATGTGTA--A-GAC--CATGGT
4255159 ATGAAATGTGTAAGACCATGGT
1 -TGAAATGTGTAAGACCATGGT
4255181 TGAAA
1 TGAAA
4255186 GATACCATGG
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
19 2 0.05
20 1 0.03
21 11 0.28
22 8 0.21
24 8 0.21
25 6 0.15
26 1 0.03
27 2 0.05
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.25
Consensus pattern (21 bp):
TGAAATGTGTAAGACCATGGT
Found at i:4255165 original size:46 final size:46
Alignment explanation
Indices: 4255113--4255240 Score: 193
Period size: 46 Copynumber: 2.8 Consensus size: 46
4255103 GCTTTCTGAA
*
4255113 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAC
* *
4255159 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAC
* ** *
4255205 ATGAAAAGAATAAAACCATGGTTGAAAGATACCATG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATG
4255241 GCAATGCACA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACATGAC
Found at i:4255303 original size:80 final size:80
Alignment explanation
Indices: 4255170--4255324 Score: 213
Period size: 80 Copynumber: 1.9 Consensus size: 80
4255160 TGAAATGTGT
* * *
4255170 AAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAAACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAAACCATAGTTGAAAGAC
4255235 ACCATGGCAATGCAC
66 ACCATGGCAATGCAC
* * * **
4255250 AAGACCGTGGTTGAAAGATATCATGGCAACATGACA-GAAAATGAGTAGGACCATAGTTGAAAGA
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA-GAATAAAACCATAGTTGAAAGA
*
4255314 CACTATGGCAA
65 CACCATGGCAA
4255325 CATGTCGATG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
79 5 0.08
80 60 0.92
ACGTcount: A:0.42, C:0.16, G:0.24, T:0.18
Consensus pattern (80 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAAACCATAGTTGAAAGAC
ACCATGGCAATGCAC
Found at i:4256253 original size:44 final size:43
Alignment explanation
Indices: 4256187--4256635 Score: 258
Period size: 44 Copynumber: 10.0 Consensus size: 43
4256177 CACCATGGTG
* * *
4256187 AATCTTATCTCCCTGAAGTTGCAGCGGAACAGATTAAAGCCAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * * *
4256230 AATACTTATCTCCCTGAAGTTGCAGTGGTGTAGGTTAAAGTTAC
1 AAT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * * ** *
4256274 AAGTCTTATCTCCCTAAAGTTGCAATGGAGCAGACTGGAGATAGC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-C
* * *
4256319 AATTCTTATTTCCTTGAAGTTGCAGTGGAACAGATTAAAGCTAC
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* *
4256363 GAATTACAAACCTTATCTCCCTGAAGTTGCAG-GGAGCAGATTGAAGCCAC
1 -AA-T------CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * * * *
4256413 TAATCTTATCTCCCTAAAGTTGCAGTGGAGTAAATTGAAGTTAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * * * * * * *
4256457 TGATCTGATCCCCCT-AGAGTTGCAATGGAGTAGATCGAAA-ATAGAA
1 -AATCTTATCTCCCTGA-AGTTGCAGTGGAGCAGAT-TAAAGCT--AC
* * * * * * * *
4256503 AAACTTATCCCCCTTAAGATGCAGTGGGGCAGGTTGAAGTTAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
* * *
4256546 GAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-C
* * * * *
4256591 AAATCTTATCT-CCTGAAGTTGTACTAGAGTAGATTAAAGCAAC
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
4256634 AA
1 AA
4256636 ATCATATACC
Statistics
Matches: 312, Mismatches: 75, Indels: 39
0.73 0.18 0.09
Matches are distributed among these distances:
42 2 0.01
43 26 0.08
44 169 0.54
45 76 0.24
46 2 0.01
49 1 0.00
50 17 0.05
51 19 0.06
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (43 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC
Found at i:4256357 original size:89 final size:89
Alignment explanation
Indices: 4256189--4256629 Score: 318
Period size: 89 Copynumber: 4.9 Consensus size: 89
4256179 CCATGGTGAA
* ** * * **
4256189 TCTTATCTCCCTGAAGTTGCAGCGGAACAGATTAAAGCCA-C-AATACTTATCTCCCTGAAGTTG
1 TCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAAT-CTTATCTCCCTGAAGTTG
* * *
4256252 CAGTGGTGTAGGTTAAAGTTACAAG
65 CAGTGGAGCAGATTAAAGTTACAAG
* * * * *
4256277 TCTTATCTCCCTAAAGTTGCAATGGAGCAGACTGGAGATAGCAATTCTTATTTCCTTGAAGTTGC
1 TCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
* *
4256342 AGTGGAACAGATTAAAGCTACGAATTACAAA
66 AGTGGAGCAGATT-AA---A-G--TTACAAG
* * * ** * *
4256373 CCTTATCTCCCTGAAGTTGC-AGGGAGCAGATTGAAGCCA-CTAATCTTATCTCCCTAAAGTTGC
1 TCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
* * * *
4256436 AGTGGAGTAAATTGAAGTTAC-TG
66 AGTGGAGCAGATTAAAGTTACAAG
* * * * * * * * * * *
4256459 ATCTGATCCCCCTAGAGTTGCAATGGAGTAGATCGAAAATAGAAAAACTTATCCCCCTTAAGATG
1 -TCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTG
* * * *
4256524 CAGTGGGGCAGGTTGAAGTTACGAG
65 CAGTGGAGCAGATTAAAGTTACAAG
* * *
4256549 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCT-CCTGAAGTTGT
1 TCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
* * *
4256613 ACTAGAGTAGATTAAAG
66 AGTGGAGCAGATTAAAG
4256630 CAACAAATCA
Statistics
Matches: 263, Mismatches: 77, Indels: 26
0.72 0.21 0.07
Matches are distributed among these distances:
87 19 0.07
88 63 0.24
89 105 0.40
90 6 0.02
93 2 0.01
94 30 0.11
95 14 0.05
96 24 0.09
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (89 bp):
TCTTATCTCCCTAAAGTTGCAATGGAGCAGATTGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
AGTGGAGCAGATTAAAGTTACAAG
Found at i:4256528 original size:183 final size:176
Alignment explanation
Indices: 4256189--4256629 Score: 424
Period size: 183 Copynumber: 2.5 Consensus size: 176
4256179 CCATGGTGAA
* *
4256189 TCTTATCTCCCTGAAGTTGCAGCGGAACAGATTAAAGCCACAATACTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACAAT-CTTATCTCCCTGAAGTTGCA
* ** * * * * *
4256254 GTGGTGTAGGTTAAAGTTACAAGTCTTATCTCCCTAAAGTTGCAATGGAGCAGACTGGAGATAGC
65 GTGGAGTAAATTAAAGTTACAAGTCTGATCCCCCTAAAGTTGCAATGGAGCAGACTGAAAATAGA
** ** * *
4256319 AATTCTTATTTCCTTGAAGTTGCAGTGGAACAGATTAAAGCTACGAAT
130 AAAACTTATCCCCTTGAAGATGCAGTGGAACAGATTAAAGCTACG-AG
*
4256367 TACAAACCTTATCTCCCTGAAGTTGCAG-GGAGCAGATTGAAGCCACTAATCTTATCTCCCTAAA
1 T------CTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCAC-AATCTTATCTCCCTGAA
* * * *
4256431 GTTGCAGTGGAGTAAATTGAAGTTAC-TGATCTGATCCCCCTAGAGTTGCAATGGAGTAGA-TCG
59 GTTGCAGTGGAGTAAATTAAAGTTACAAG-TCTGATCCCCCTAAAGTTGCAATGGAGCAGACT-G
** * * *
4256494 AAAATAGAAAAACTTATCCCCCTT-AAGATGCAGTGGGGCAGGTTGAAGTTACGAG
122 AAAATAGAAAAACTTAT-CCCCTTGAAGATGCAGTGGAACAGATTAAAGCTACGAG
* ** *
4256549 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTTATCT-CCTGAAGTTGT
1 TCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCA-C-AATCTTATCTCCCTGAAGTTGC
* * *
4256613 ACTAGAGTAGATTAAAG
64 AGTGGAGTAAATTAAAG
4256630 CAACAAATCA
Statistics
Matches: 216, Mismatches: 35, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
176 21 0.10
177 37 0.17
178 12 0.06
182 4 0.02
183 114 0.53
184 28 0.13
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (176 bp):
TCTTATCTCCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACAATCTTATCTCCCTGAAGTTGCAG
TGGAGTAAATTAAAGTTACAAGTCTGATCCCCCTAAAGTTGCAATGGAGCAGACTGAAAATAGAA
AAACTTATCCCCTTGAAGATGCAGTGGAACAGATTAAAGCTACGAG
Found at i:4257625 original size:467 final size:467
Alignment explanation
Indices: 4256748--4257683 Score: 1728
Period size: 467 Copynumber: 2.0 Consensus size: 467
4256738 TCCTATCTCT
*
4256748 CTGAAGTTGTAGTGGAGTGGATCGAAGCAACAATTCCTATACCCTTGAAGATGCAGTGGGATGAA
1 CTGAAGTTGTAGTGGAGTGGATCGAAGCAACAATTCCTATACCCTTAAAGATGCAGTGGGATGAA
4256813 ATAAGGCTACTTTAAGAAAAGAAGCACCAAAAAATCAAGATTCGGCAAAACCAGGCAAAATTGAC
66 ATAAGGCTACTTTAAGAAAAGAAGCACCAAAAAATCAAGATTCGGCAAAACCAGGCAAAATTGAC
4256878 CCTTTTAAAAGTCTTTGCTCCATTCACGCTACACGTCAACGAGCAAAAAAGGGAAACTATAATAG
131 CCTTTTAAAAGTCTTTGCTCCATTCACGCTACACGTCAACGAGCAAAAAAGGGAAACTATAATAG
* * *
4256943 ACTAATTTTGGCCTGGGCCAGATTACAAAACTAAACCCAAACTAAATAAATAAAAAATAGTCCAA
196 ACCAATTTTGGCCTAGGCCAGATTACAAAACTAAACCCAAACCAAATAAATAAAAAATAGTCCAA
4257008 AATTAATGGTCCATTTACAAACCAAATAACCTAAACTAAGACCCATTACATACCAAGCCTAAAGG
261 AATTAATGGTCCATTTACAAACCAAATAACCTAAACTAAGACCCATTACATACCAAGCCTAAAGG
* *
4257073 AAGCCCAAGCAGATGACCCCAACTAAAATCCAAACAAAAACTAAACCAGCCCAAAGTTAAAACCC
326 AAGCCCAAGCAGATGACCCAAACTAAAACCCAAACAAAAACTAAACCAGCCCAAAGTTAAAACCC
*
4257138 AATTACAAACCCAATAACCTAAACCCTAATAGCCCAATACAACCCAAAACAAAAGTAAGCAGAAG
391 AATTACAAACACAATAACCTAAACCCTAATAGCCCAATACAACCCAAAACAAAAGTAAGCAGAAG
4257203 AAAGAAAAAACC
456 AAAGAAAAAACC
4257215 CTGAAGTTGTAGTGGAGTGGATCGAAGCAACAATTCCTATACCCTTAAAGATGCAGTGGGATGAA
1 CTGAAGTTGTAGTGGAGTGGATCGAAGCAACAATTCCTATACCCTTAAAGATGCAGTGGGATGAA
* *
4257280 ATAAGGCTACTTTAAGAAAAGAAGCACCAAAAAGTCAAGATTCGGCAACACCAGGCAAAATTGAC
66 ATAAGGCTACTTTAAGAAAAGAAGCACCAAAAAATCAAGATTCGGCAAAACCAGGCAAAATTGAC
*
4257345 CCTTTTAAAAGTCTTTGCTCCATTCACGCTACACGTCAACGAGCAAAAAAGGGCAACTATAATAG
131 CCTTTTAAAAGTCTTTGCTCCATTCACGCTACACGTCAACGAGCAAAAAAGGGAAACTATAATAG
*
4257410 GCCAATTTTGGCCTAGGCCAGATTACAAAACTAAACCCAAACCAAATAAATAAAAAATAGTCCAA
196 ACCAATTTTGGCCTAGGCCAGATTACAAAACTAAACCCAAACCAAATAAATAAAAAATAGTCCAA
4257475 AATTAATGGTCCATTTACAAACCAAATAACCTAAACTAAGACCCATTACATACCAAGCCTAAAGG
261 AATTAATGGTCCATTTACAAACCAAATAACCTAAACTAAGACCCATTACATACCAAGCCTAAAGG
* *
4257540 AAGCCCGAGCAGATGACCCAAACTAAAACCCAAACCAAAACTAAACCAGCCCAAAGTTAAAACCC
326 AAGCCCAAGCAGATGACCCAAACTAAAACCCAAACAAAAACTAAACCAGCCCAAAGTTAAAACCC
* * *
4257605 AATTACAAACATATTAACCTAAACCCTAATAGCCCAATACAACCCAAAACAAAAGTAAGTAGAAG
391 AATTACAAACACAATAACCTAAACCCTAATAGCCCAATACAACCCAAAACAAAAGTAAGCAGAAG
4257670 AAAGAAAAAACC
456 AAAGAAAAAACC
4257682 CT
1 CT
4257684 AGGTGTGCCG
Statistics
Matches: 453, Mismatches: 16, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
467 453 1.00
ACGTcount: A:0.45, C:0.23, G:0.14, T:0.18
Consensus pattern (467 bp):
CTGAAGTTGTAGTGGAGTGGATCGAAGCAACAATTCCTATACCCTTAAAGATGCAGTGGGATGAA
ATAAGGCTACTTTAAGAAAAGAAGCACCAAAAAATCAAGATTCGGCAAAACCAGGCAAAATTGAC
CCTTTTAAAAGTCTTTGCTCCATTCACGCTACACGTCAACGAGCAAAAAAGGGAAACTATAATAG
ACCAATTTTGGCCTAGGCCAGATTACAAAACTAAACCCAAACCAAATAAATAAAAAATAGTCCAA
AATTAATGGTCCATTTACAAACCAAATAACCTAAACTAAGACCCATTACATACCAAGCCTAAAGG
AAGCCCAAGCAGATGACCCAAACTAAAACCCAAACAAAAACTAAACCAGCCCAAAGTTAAAACCC
AATTACAAACACAATAACCTAAACCCTAATAGCCCAATACAACCCAAAACAAAAGTAAGCAGAAG
AAAGAAAAAACC
Found at i:4261294 original size:35 final size:35
Alignment explanation
Indices: 4261196--4261670 Score: 393
Period size: 35 Copynumber: 13.5 Consensus size: 35
4261186 TGGCAAAGTG
* * * *
4261196 TGAAATGTAGGTATGGTAT-TTCCATACAGAGCTA
1 TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
* *
4261230 TGAAACTTAGGTATGGTATTATCAAATCCAAACTGAGTTA
1 TGAAACGTAGGTATGG---TATC--ATCCATACTGAGTTA
* * *
4261270 AGAAACGTAGGTATGGTATCATCCATACCGAGTTG
1 TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
* * * *
4261305 TGAAATGTAGGTATGGTATTAACCATACTGAGTTG
1 TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
* *
4261340 TGAAATGTAGGTATGGTATCATCCATACTGAGTTG
1 TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
* * * * *
4261375 TGAAACATAGGTATGGTATTAACCATACCGAGTTG
1 TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
* * * *
4261410 TGAAACGTAGGTATGGTATTAACCATACTGAGCTG
1 TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
* * *
4261445 TGAAACGTAGGTATGGTAT-TTCCATACCGAGCTA
1 TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
* * *
4261479 TGAAACGTAGGTATGGTAT-TTCCATACCGAGCTA
1 TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
* ** * *
4261513 TGAAACGTAAGTATGGCGTCGTCCATACTGAGCTA
1 TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
* * *
4261548 TGATACGTAGGTATGGCATCGTCCATACTGAGTTA
1 TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
* ** ** * * *
4261583 TAAAATATAGGTATGGTATTTTCTATACCGAG-CA
1 TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
* * ** * *
4261617 TGAAAAGTAGGTATGGTGTTTTCCATA-TCAAGTTG
1 TGAAACGTAGGTATGGTATCATCCATACT-GAGTTA
4261652 TGAAACGTAGGTATGGTAT
1 TGAAACGTAGGTATGGTAT
4261671 TTCAATGAGG
Statistics
Matches: 372, Mismatches: 60, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
34 100 0.27
35 240 0.65
37 7 0.02
40 25 0.07
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (35 bp):
TGAAACGTAGGTATGGTATCATCCATACTGAGTTA
Found at i:4261386 original size:105 final size:105
Alignment explanation
Indices: 4261194--4261670 Score: 496
Period size: 105 Copynumber: 4.5 Consensus size: 105
4261184 CATGGCAAAG
* * * *
4261194 TGTGAAATGTAGGTATGGTATT-TCCATACAGAGCTATGAAACTTAGGTATGGTATTATCAAATC
1 TGTGAAACGTAGGTATGGTATTATCCATACTGAGCTGTGAAACGTAGGTATGG---TATC--ATC
* * * *
4261258 CAAACTGAGTTAAGAAACGTAGGTATGGTATCATCCATACCGAGT
61 CATACTGAGTTATGAAACATAGGTATGGTATTATCCATACCGAGT
* * * *
4261303 TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAATGTAGGTATGGTATCATCCATAC
1 TGTGAAACGTAGGTATGGTATTATCCATACTGAGCTGTGAAACGTAGGTATGGTATCATCCATAC
* *
4261368 TGAGTTGTGAAACATAGGTATGGTATTAACCATACCGAGT
66 TGAGTTATGAAACATAGGTATGGTATTATCCATACCGAGT
* *
4261408 TGTGAAACGTAGGTATGGTATTAACCATACTGAGCTGTGAAACGTAGGTATGGTAT-TTCCATAC
1 TGTGAAACGTAGGTATGGTATTATCCATACTGAGCTGTGAAACGTAGGTATGGTATCATCCATAC
* * * *
4261472 CGAGCTATGAAACGTAGGTATGGTATT-TCCATACCGAGC
66 TGAGTTATGAAACATAGGTATGGTATTATCCATACCGAGT
* * ** ** * * * *
4261511 TATGAAACGTAAGTATGGCGTCGTCCATACTGAGCTATGATACGTAGGTATGGCATCGTCCATAC
1 TGTGAAACGTAGGTATGGTATTATCCATACTGAGCTGTGAAACGTAGGTATGGTATCATCCATAC
* * * *
4261576 TGAGTTATAAAATATAGGTATGGTATTTTCTATACCGAG-
66 TGAGTTATGAAACATAGGTATGGTATTATCCATACCGAGT
** * * * * *
4261615 CATGAAAAGTAGGTATGGTGTTTTCCATA-TCAAGTTGTGAAACGTAGGTATGGTAT
1 TGTGAAACGTAGGTATGGTATTATCCATACT-GAGCTGTGAAACGTAGGTATGGTAT
4261671 TTCAATGAGG
Statistics
Matches: 314, Mismatches: 50, Indels: 13
0.83 0.13 0.03
Matches are distributed among these distances:
103 57 0.18
104 102 0.32
105 105 0.33
107 4 0.01
109 22 0.07
110 24 0.08
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (105 bp):
TGTGAAACGTAGGTATGGTATTATCCATACTGAGCTGTGAAACGTAGGTATGGTATCATCCATAC
TGAGTTATGAAACATAGGTATGGTATTATCCATACCGAGT
Found at i:4261596 original size:173 final size:172
Alignment explanation
Indices: 4261271--4261673 Score: 455
Period size: 173 Copynumber: 2.3 Consensus size: 172
4261261 ACTGAGTTAA
* * * *
4261271 GAAACGTAGGTATGGTATCATCCATACCGAGTTGTGAAATGTAGGTATGGTATTAACCATACTGA
1 GAAACGTAGGTATGGTAT-TTCCATACCGAGTTGTGAAACGTAGGTATGGTATT-TCCATACCGA
* * * * * * * * *
4261336 GTTGTGAAATGTAGGTATGGTATCATCCATACTGAGTTGTGAAACATAGGTATGGTATTAACCAT
64 GCTATGAAACGTAAGTATGGCATCATCCATACTGAGCTATGAAACATAGGTATGGCATCAACCAT
* * * * *
4261401 ACCGAGTTGTGAAACGTAGGTATGGTATTAACCATACTGAGCTGT
129 ACCGAGTTATAAAACATAGGTATGGTATTAACCATACCGAGC-AT
* *
4261446 GAAACGTAGGTATGGTATTTCCATACCGAGCTATGAAACGTAGGTATGGTATTTCCATACCGAGC
1 GAAACGTAGGTATGGTATTTCCATACCGAGTTGTGAAACGTAGGTATGGTATTTCCATACCGAGC
* * * * **
4261511 TATGAAACGTAAGTATGGCGTCGTCCATACTGAGCTATGATACGTAGGTATGGCATCGTCCATAC
66 TATGAAACGTAAGTATGGCATCATCCATACTGAGCTATGAAACATAGGTATGGCATCAACCATAC
* * ** *
4261576 TGAGTTATAAAATATAGGTATGGTATTTTCTATACCGAGCAT
131 CGAGTTATAAAACATAGGTATGGTATTAACCATACCGAGCAT
* * * *
4261618 GAAAAGTAGGTATGGTGTTTTCCATATCAAGTTGTGAAACGTAGGTATGGTATTTC
1 GAAACGTAGGTATGGT-ATTTCCATACCGAGTTGTGAAACGTAGGTATGGTATTTC
4261674 AATGAGGAAA
Statistics
Matches: 190, Mismatches: 37, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
172 16 0.08
173 125 0.66
174 31 0.16
175 18 0.09
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (172 bp):
GAAACGTAGGTATGGTATTTCCATACCGAGTTGTGAAACGTAGGTATGGTATTTCCATACCGAGC
TATGAAACGTAAGTATGGCATCATCCATACTGAGCTATGAAACATAGGTATGGCATCAACCATAC
CGAGTTATAAAACATAGGTATGGTATTAACCATACCGAGCAT
Found at i:4261816 original size:31 final size:31
Alignment explanation
Indices: 4261767--4261827 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
4261757 ATAAGTAATT
*
4261767 TGATTAGTGAAAAATGGTAGCTCCGGCTACC
1 TGATCAGTGAAAAATGGTAGCTCCGGCTACC
* * *
4261798 TGATCAGTGAATAGTGGTAGCTTCGGCTAC
1 TGATCAGTGAAAAATGGTAGCTCCGGCTAC
4261828 AAGTGACAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (31 bp):
TGATCAGTGAAAAATGGTAGCTCCGGCTACC
Found at i:4269924 original size:22 final size:22
Alignment explanation
Indices: 4269886--4269939 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
4269876 CCATGCCAAA
4269886 TTTCAAAA-AA-TT-AAATTAAG
1 TTTCAAAATAATTTAAAATT-AG
4269906 TTT-AAAATAATTTAAAATTAG
1 TTTCAAAATAATTTAAAATTAG
*
4269927 TTTCAAATTAATT
1 TTTCAAAATAATT
4269940 GAAACAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
19 4 0.14
20 5 0.17
21 7 0.24
22 13 0.45
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43
Consensus pattern (22 bp):
TTTCAAAATAATTTAAAATTAG
Found at i:4270179 original size:2 final size:2
Alignment explanation
Indices: 4270172--4270198 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4270162 ACAAGTTTAC
4270172 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
4270199 CCATGTAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4273356 original size:9 final size:9
Alignment explanation
Indices: 4273333--4273380 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
4273323 TACCAATTCA
4273333 GTTAATTTGG
1 GTTAATTT-G
4273343 GTTAATTTG
1 GTTAATTTG
*
4273352 ATTAA-TT-
1 GTTAATTTG
4273359 -TTAATTTG
1 GTTAATTTG
4273367 GTTAATTTG
1 GTTAATTTG
4273376 GTTAA
1 GTTAA
4273381 ATGAACATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
6 4 0.12
7 2 0.06
8 2 0.06
9 18 0.53
10 8 0.24
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (9 bp):
GTTAATTTG
Found at i:4273364 original size:15 final size:15
Alignment explanation
Indices: 4273344--4273374 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4273334 TTAATTTGGG
4273344 TTAATTTGATTAATT
1 TTAATTTGATTAATT
*
4273359 TTAATTTGGTTAATT
1 TTAATTTGATTAATT
4273374 T
1 T
4273375 GGTTAAATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (15 bp):
TTAATTTGATTAATT
Found at i:4273374 original size:24 final size:25
Alignment explanation
Indices: 4273334--4273380 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
4273324 ACCAATTCAG
4273334 TTAATTTGGGTTAATTTGATTAATT
1 TTAATTTGGGTTAATTTGATTAATT
*
4273359 TTAATTT-GGTTAATTTGGTTAA
1 TTAATTTGGGTTAATTTGATTAA
4273381 ATGAACATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (25 bp):
TTAATTTGGGTTAATTTGATTAATT
Found at i:4274397 original size:16 final size:18
Alignment explanation
Indices: 4274360--4274393 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4274350 AAATTTTAAC
*
4274360 TTTT-TTAATTTATATAA
1 TTTTATTAATATATATAA
4274377 TTTTATTAATATATATA
1 TTTTATTAATATATATA
4274394 TTTACCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTATTAATATATATAA
Found at i:4276500 original size:29 final size:29
Alignment explanation
Indices: 4276446--4276502 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
4276436 ACGAATTTAT
* *
4276446 AATTTAATTATTTTACTTTTATTTTTAAG
1 AATTTAATTATATTACTTTTAATTTTAAG
*
4276475 AATTTAATTA-ATTATTTTTAAATTTTAA
1 AATTTAATTATATTACTTTT-AATTTTAA
4276503 AACTCAGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (29 bp):
AATTTAATTATATTACTTTTAATTTTAAG
Found at i:4282189 original size:89 final size:90
Alignment explanation
Indices: 4282032--4282203 Score: 229
Period size: 89 Copynumber: 1.9 Consensus size: 90
4282022 TTCTTGCTGC
* * * * * * ***
4282032 TTTTTTTTTACTCATTTGGGTACTTGAACTTTCAAAATGTATCAAAAATATCCTCAAACTT-TTC
1 TTTTTTTGTACTCAATTGGATACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTTAAAA
4282096 AAAAAAAGCAATTAAGCCCCTACTA
66 AAAAAAAGCAATTAAGCCCCTACTA
* *
4282121 TTTTTTTGTACTTAATTGGATACTTGAACTTTCAAAATGCATCAAAGAGACCCTCAAACTTAAAA
1 TTTTTTTGTACTCAATTGGATACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTT-AAA
4282186 AAAAAAAAGCAATTAAGC
65 AAAAAAAAGCAATTAAGC
4282204 TCATGCTTTT
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
89 53 0.76
91 17 0.24
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (90 bp):
TTTTTTTGTACTCAATTGGATACTTGAACTTTCAAAATGCATCAAAAAGACCCTCAAACTTAAAA
AAAAAAAGCAATTAAGCCCCTACTA
Found at i:4282315 original size:20 final size:20
Alignment explanation
Indices: 4282290--4282340 Score: 70
Period size: 18 Copynumber: 2.6 Consensus size: 20
4282280 TTAAAAATTT
4282290 AAATATTAAAAATTAGAAAA
1 AAATATTAAAAATTAGAAAA
*
4282310 AAATATT-AAAA-TAGTAAA
1 AAATATTAAAAATTAGAAAA
*
4282328 AAATATAAAAAAT
1 AAATATTAAAAAT
4282341 ATAAAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 12 0.44
19 8 0.30
20 7 0.26
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (20 bp):
AAATATTAAAAATTAGAAAA
Found at i:4282321 original size:28 final size:27
Alignment explanation
Indices: 4282282--4282347 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 27
4282272 AATTTTAATT
* *
4282282 AAAAAT-TT-AAATATTAAAAATTAGAA
1 AAAAATATTAAAATAGTAAAAAATA-AA
*
4282308 AAAAATATTAAAATAGTAAAAAATATA
1 AAAAATATTAAAATAGTAAAAAATAAA
4282335 AAAAATA-TAAAAT
1 AAAAATATTAAAAT
4282348 TTTATAAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 12 0.34
27 10 0.29
28 13 0.37
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (27 bp):
AAAAATATTAAAATAGTAAAAAATAAA
Found at i:4282623 original size:19 final size:19
Alignment explanation
Indices: 4282593--4282642 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
4282583 ATTTTTCTAT
4282593 ATTTTTATTAAAATTTAATA
1 ATTTTTA-TAAAATTTAATA
* *
4282613 ATTTTTCTAAAATTTATTA
1 ATTTTTATAAAATTTAATA
*
4282632 TTTTTTATAAA
1 ATTTTTATAAA
4282643 TTATTTTCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTTTTATAAAATTTAATA
Found at i:4282647 original size:17 final size:18
Alignment explanation
Indices: 4282601--4282636 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
4282591 ATATTTTTAT
*
4282601 TAAAATTTAATAATTTTTC
1 TAAAATTT-ATTATTTTTC
4282620 TAAAATTTATTATTTTT
1 TAAAATTTATTATTTTT
4282637 TATAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
TAAAATTTATTATTTTTC
Found at i:4293118 original size:31 final size:30
Alignment explanation
Indices: 4293065--4293122 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
4293055 TGGAGGTTTT
*
4293065 TTTTTTTTTAATTTAATATTAATATAATTG
1 TTTTTATTTAATTTAATATTAATATAATTG
4293095 TTTTTATTTAATATTAA-ATTTAATATAA
1 TTTTTATTTAAT-TTAATA-TTAATATAA
4293123 AATTGAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (30 bp):
TTTTTATTTAATTTAATATTAATATAATTG
Found at i:4293921 original size:19 final size:19
Alignment explanation
Indices: 4293897--4293939 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
4293887 TAGATTTTTT
*
4293897 ATTTTTCT-ATATTCTTTAG
1 ATTTTTCTAATATT-TTTAA
*
4293916 ATTTTTTTAATATTTTTAA
1 ATTTTTCTAATATTTTTAA
4293935 ATTTT
1 ATTTT
4293940 ATAAATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (19 bp):
ATTTTTCTAATATTTTTAA
Found at i:4293963 original size:24 final size:24
Alignment explanation
Indices: 4293932--4293980 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
4293922 TTAATATTTT
4293932 TAAATTTT-ATAAATTTTAAAAATA
1 TAAATTTTGA-AAATTTTAAAAATA
* *
4293956 TAAATTTTGAAATTTTTATAAATA
1 TAAATTTTGAAAATTTTAAAAATA
4293980 T
1 T
4293981 TTTGAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 21 0.95
25 1 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (24 bp):
TAAATTTTGAAAATTTTAAAAATA
Found at i:4293990 original size:19 final size:19
Alignment explanation
Indices: 4293943--4294008 Score: 78
Period size: 19 Copynumber: 3.3 Consensus size: 19
4293933 AAATTTTATA
4293943 AATTTTAAAAATATAAATTTTG
1 AATTTTAAAAA-AT--ATTTTG
* *
4293965 AAATTTTTATAAATATTTTG
1 -AATTTTAAAAAATATTTTG
4293985 AATTTTAAAAAATATTTTG
1 AATTTTAAAAAATATTTTG
4294004 AATTT
1 AATTT
4294009 ATTTTGTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
19 22 0.56
20 6 0.15
22 2 0.05
23 9 0.23
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
AATTTTAAAAAATATTTTG
Found at i:4295714 original size:29 final size:28
Alignment explanation
Indices: 4295672--4295726 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
4295662 ATTTAAAATT
4295672 TAAAAAGTAAAAAACTAAATTCCTAAAAA
1 TAAAAAGTAAAAAACTAAATT-CTAAAAA
4295701 TAAAAA-TATAAAAACTAAATTCTAAA
1 TAAAAAGTA-AAAAACTAAATTCTAAA
4295727 TTTATGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 7 0.28
29 18 0.72
ACGTcount: A:0.65, C:0.09, G:0.02, T:0.24
Consensus pattern (28 bp):
TAAAAAGTAAAAAACTAAATTCTAAAAA
Found at i:4306466 original size:19 final size:19
Alignment explanation
Indices: 4306426--4306467 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
4306416 TTAAATTTTG
* *
4306426 TTATTACCCTTAGTTTATA
1 TTATTACCCTAAGCTTATA
4306445 TTATTAACCCTAAGCTTA-A
1 TTATT-ACCCTAAGCTTATA
4306464 TTAT
1 TTAT
4306468 CTAGCCAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.31, C:0.17, G:0.05, T:0.48
Consensus pattern (19 bp):
TTATTACCCTAAGCTTATA
Found at i:4307036 original size:33 final size:33
Alignment explanation
Indices: 4306994--4307061 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
4306984 AATTGGACTT
4306994 GCTTAAAAAAATGTAAACCTATCCAAAGGTTGG
1 GCTTAAAAAAATGTAAACCTATCCAAAGGTTGG
4307027 GCTTAAAAAAATGTAAACCTATCCAAAGGTTGG
1 GCTTAAAAAAATGTAAACCTATCCAAAGGTTGG
4307060 GC
1 GC
4307062 CTTGGATAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.24
Consensus pattern (33 bp):
GCTTAAAAAAATGTAAACCTATCCAAAGGTTGG
Found at i:4313067 original size:53 final size:54
Alignment explanation
Indices: 4312993--4313297 Score: 386
Period size: 55 Copynumber: 5.6 Consensus size: 54
4312983 AACTTACCAT
* *
4312993 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * *
4313046 TGCCATGTCTTGGCATAGTCTTACATGAG-A-CCTTTTCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATG-GTATCC-TTGCCTTATAG-AACTCATCAA
* *
4313101 TGCCATGTCTTGACATGGTCTTACATGGTATCCTAGCCTTAT-GAACTCATCGA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * *
4313154 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCATCAA
* * *
4313209 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * *
4313263 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
4313298 ATCTTACCAA
Statistics
Matches: 218, Mismatches: 24, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
52 4 0.02
53 77 0.35
54 46 0.21
55 87 0.40
56 4 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
Found at i:4313186 original size:108 final size:108
Alignment explanation
Indices: 4312993--4313290 Score: 488
Period size: 108 Copynumber: 2.8 Consensus size: 108
4312983 AACTTACCAT
* * *
4312993 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAATGCCATGTCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCATCAATGCCATGCCTTG
* *
4313058 GCATAGTCTTACATGAGACCTTTTCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGAGACCTTTGCCTTATAGTAACTCATCAA
* *
4313101 TGCCATGTCTTGACATGGTCTTACATGGTATCCTAGCCTTATGAACTCATCGATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCATCAATGCCATGCCTTG
*
4313166 GCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTCATCAA
66 GCATGGTCTTACATGAGACCTTTGCCTTATAGTAACTCATCAA
* * *
4313209 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCATCAATGCCATGCCTT
4313274 GGCATGGTCTTACATGA
65 GGCATGGTCTTACATGA
4313291 TATCCTTATC
Statistics
Matches: 175, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
108 139 0.79
109 36 0.21
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCATCAATGCCATGCCTTG
GCATGGTCTTACATGAGACCTTTGCCTTATAGTAACTCATCAA
Found at i:4313328 original size:47 final size:47
Alignment explanation
Indices: 4313276--4313397 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
4313266 CATGCCTTGG
* *
4313276 CATGGTCTTACATGATATCCTTATCTTACCAAAT-TCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGT-CATGTTCCAAA
4313323 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
4313370 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
4313398 GTGCCAATGT
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
47 71 0.99
48 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
Found at i:4317409 original size:28 final size:28
Alignment explanation
Indices: 4317369--4317425 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
4317359 CATGGCTCAT
4317369 TCCTGTCTCCAAAGCCATATATCTGATA
1 TCCTGTCTCCAAAGCCATATATCTGATA
4317397 TCCTGTCTCCAAAGCCATATATCTGATA
1 TCCTGTCTCCAAAGCCATATATCTGATA
4317425 T
1 T
4317426 GGACTTACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (28 bp):
TCCTGTCTCCAAAGCCATATATCTGATA
Found at i:4324800 original size:5 final size:5
Alignment explanation
Indices: 4324790--4324814 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
4324780 TGGCTCATTT
4324790 CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC
4324815 AACCCCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:4327035 original size:3 final size:3
Alignment explanation
Indices: 4327027--4327090 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
4327017 TACCGTTTAC
4327027 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4327075 TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
4327091 TTAACATTAA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:4328166 original size:3 final size:3
Alignment explanation
Indices: 4328158--4328196 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
4328148 ACACTATTAT
4328158 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
4328197 GAAATACAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4328544 original size:12 final size:12
Alignment explanation
Indices: 4328520--4328550 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
4328510 GAGGGTATAT
4328520 ATAATAT-AATA
1 ATAATATAAATA
4328531 ATAATATAAATA
1 ATAATATAAATA
4328543 ATAATATA
1 ATAATATA
4328551 TACATGAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.37
12 12 0.63
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:4329100 original size:30 final size:30
Alignment explanation
Indices: 4329066--4329181 Score: 205
Period size: 30 Copynumber: 3.9 Consensus size: 30
4329056 ATTTGATGGT
*
4329066 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
*
4329096 GTAGGTGCAAGTGGGAGGCAAGGTGATGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
4329126 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
*
4329156 GCAGGTGCAAGTGGGAGGCAAGGTGG
1 GTAGGTGCAAGTGGGAGGCAAGGTGG
4329182 CTAGGGTTTT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 82 1.00
ACGTcount: A:0.25, C:0.08, G:0.52, T:0.16
Consensus pattern (30 bp):
GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
Found at i:4329119 original size:18 final size:18
Alignment explanation
Indices: 4329098--4329180 Score: 73
Period size: 18 Copynumber: 5.3 Consensus size: 18
4329088 GTGGTGGAGT
4329098 AGGTGCAAGTGGGAGGCA
1 AGGTGCAAGTGGGAGGCA
*
4329116 AGGTG--A-T-GGA-G-T
1 AGGTGCAAGTGGGAGGCA
4329128 AGGTGCAAGTGGGAGGCA
1 AGGTGCAAGTGGGAGGCA
4329146 AGGTG---GT-GGA-GC-
1 AGGTGCAAGTGGGAGGCA
4329158 AGGTGCAAGTGGGAGGCA
1 AGGTGCAAGTGGGAGGCA
4329176 AGGTG
1 AGGTG
4329181 GCTAGGGTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 24
0.66 0.03 0.31
Matches are distributed among these distances:
12 10 0.20
13 3 0.06
14 7 0.14
15 6 0.12
16 7 0.14
17 3 0.06
18 15 0.29
ACGTcount: A:0.25, C:0.08, G:0.52, T:0.14
Consensus pattern (18 bp):
AGGTGCAAGTGGGAGGCA
Found at i:4329805 original size:87 final size:87
Alignment explanation
Indices: 4329699--4330333 Score: 711
Period size: 86 Copynumber: 7.4 Consensus size: 87
4329689 AGTTGTAATT
* * * * *
4329699 TTTAGCTTGGTACCCTACTGCTTAAGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCTTATTGC
1 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGC
*
4329764 TTAGGGTGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* *** ** * *
4329786 TTTAGCCTGTTACCCTACTGTTTAGGGG-TTAAGGCTTGTCACCTTTGATCTGTTTCCCTACTAC
1 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGC
*
4329850 TTAAGGGGTTTAAGATCTGTAAA
66 TT-AGGGGGTTAAGATCTGTAAA
*** **
4329873 TCTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCACCTTCGATCTGTTTCCCTACT
1 --TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACT
*
4329938 GTTTA---GG----G-TCTGTAAA
64 GCTTAGGGGGTTAAGATCTGTAAA
* * ** *
4329954 TTTAACCTGTTACCCTACTGCTTAGGAGTTTAAGGCTTATCGTCTTTGATCTGTTTCCCTACTGC
1 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGC
*
4330019 TTAGGGGGTTAAGATTTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* *
4330041 TTCAGCCTGTTA-CCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
1 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGC
4330105 TTAGGGGGTTAAGATCTGTAAA
66 TTAGGGGGTTAAGATCTGTAAA
* * * *
4330127 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTTGATCTG-CTCCACTACTG
1 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCC-CTACTG
* * *
4330191 CTTAGGGAGATAAGATCTG-CAA
65 CTTAGGGGGTTAAGATCTGTAAA
* * * * ** ***
4330213 TTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTATTCTTCGATCTGTTTTTTTACTG-
1 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGC
*
4330277 TATAGGGGGTTAAGATCTGGAAA
66 T-TAGGGGGTTAAGATCTGTAAA
*
4330300 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
1 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
4330334 ATCTGTAAAT
Statistics
Matches: 471, Mismatches: 60, Indels: 34
0.83 0.11 0.06
Matches are distributed among these distances:
79 61 0.13
81 8 0.02
82 3 0.01
85 1 0.00
86 182 0.39
87 153 0.32
89 28 0.06
90 35 0.07
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (87 bp):
TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAA
Found at i:4329936 original size:44 final size:44
Alignment explanation
Indices: 4329711--4330162 Score: 217
Period size: 44 Copynumber: 10.5 Consensus size: 44
4329701 TAGCTTGGTA
* *** ** *
4329711 CCCTACTGCTTAAGGGTTTAAGGCCCATCGTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGACCTGTTT
* * * * * * *
4329755 CCTTATTGCTTA-GGGTGTTAA-GATCTGTAAATTTAG-CCTGTTA
1 CCCTACTGCTTAGGGGT-TTAAGGCT-TGTCAACTTCGACCTGTTT
* * * *
4329798 CCCTACTGTTTAGGGG-TTAAGGCTTGTCACCTTTGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGACCTGTTT
* * * * *
4329841 CCCTACTACTTAAGGGGTTTAA-GATCTGTAAATCTT-TAGCCTGTTA
1 CCCTACTGCTT-AGGGGTTTAAGGCT-TGTCAA-CTTCGA-CCTGTTT
* *
4329887 CCCTACTGCTTAGGGGTTTAAGGCTTGTCACCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGACCTGTTT
* * ** *
4329931 CCCTACTGTTTA-GGG--T----C-TGT-AAATTTAACCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGACCTGTTT
* * ** * *
4329966 CCCTACTGCTTAGGAGTTTAAGGCTTATCGTCTTTGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGACCTGTTT
* ** *
4330010 CCCTACTGCTTAGGGGGTTAAGATTTGT-AAATTC-AGCCTG-TT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGA-CCTGTTT
* *** ** *
4330052 ACCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGACCTGTTT
* * * *
4330096 CCCTACTGCTTAGGGGGTTAA-GATCTGT-AAATTC-AGCCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGGCT-TGTCAACTTCGA-CCTGTTT
4330139 CCCTACTGCTTAGGGGTTTAAGGC
1 CCCTACTGCTTAGGGGTTTAAGGC
4330163 CCTTCGTCTT
Statistics
Matches: 292, Mismatches: 88, Indels: 56
0.67 0.20 0.13
Matches are distributed among these distances:
35 20 0.07
36 5 0.02
37 1 0.00
38 1 0.00
41 1 0.00
42 37 0.13
43 80 0.27
44 103 0.35
45 24 0.08
46 20 0.07
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.38
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGACCTGTTT
Found at i:4330172 original size:173 final size:174
Alignment explanation
Indices: 4329699--4330333 Score: 758
Period size: 173 Copynumber: 3.7 Consensus size: 174
4329689 AGTTGTAATT
* * * * * *
4329699 TTTAGCTTGGTACCCTACTGCTTAAGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCCTTATTGC
1 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
* * * * **
4329764 TTAGGGTGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGTTTAGGGG-TTAAGGCTTGTCAC
66 TTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCGT
* *
4329828 CTTTGATCTGTTTCCCTACTACTTAAGGGGTTTAAGATCTGTAAA
131 CTTTGATCTGTTTCCCTACTGCTT-AGGGGGTTAAGATCTGTAAA
*** *
4329873 TCTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCACCTTCGATCTGTTTCCCTACT
1 --TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACT
* * * *
4329938 GTTTA---GG----G-TCTGTAAATTTAACCTGTTACCCTACTGCTTAGGAGTTTAAGGCTTATC
64 GCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATC
*
4329995 GTCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAA
129 GTCTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAA
*
4330041 TTCAGCCTGTTA-CCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
1 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
*
4330105 TTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCT-TCG
66 TTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGG-CTTATCG
* * * *
4330169 TCTTTGATCTG-CTCCACTACTGCTTAGGGAGATAAGATCTG-CAA
130 TCTTTGATCTGTTTCC-CTACTGCTTAGGGGGTTAAGATCTGTAAA
* * * * *** ***
4330213 TTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTATTCTTCGATCTGTTTTTTTACTG-
1 TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
*
4330277 TATAGGGGGTTAAGATCTGGAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
66 T-TAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
4330334 ATCTGTAAAT
Statistics
Matches: 398, Mismatches: 48, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
165 50 0.13
166 11 0.03
168 53 0.13
169 35 0.09
172 16 0.04
173 174 0.44
174 2 0.01
176 57 0.14
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (174 bp):
TTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGC
TTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCGT
CTTTGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAA
Found at i:4330374 original size:86 final size:86
Alignment explanation
Indices: 4329959--4330376 Score: 406
Period size: 86 Copynumber: 4.8 Consensus size: 86
4329949 GTAAATTTAA
* * *
4329959 CCTGTTACCCTACTGCTTAGGAGTTTAAG-GCT-TATCGTCTTTGATCTGTTTCCCTACTGCTTA
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACCTGTA-C-T-TTCGATCTGTTTCCCTACTGCTTA
* *
4330022 GGGGGTTAAGATTTGTAAATTCAG
63 GGGGGTTAAGATCTGGAAATTCAG
* ** * *
4330046 CCTGTTA-CCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACCTGT-ACTTTCGATCTGTTTCCCTACTGCTTAGG
*
4330110 GGGTTAAGATCTGTAAATTCAG
65 GGGTTAAGATCTGGAAATTCAG
* *
4330132 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGT-CTTT-GATCTG-CTCCACTACTGCTT
1 CCTGTTACCCTACTGCTTAGGGGTTTAA-GACC-T-GTACTTTCGATCTGTTTCC-CTACTGCTT
* * * **
4330194 AGGGAGATAAGATCT-GCAATTTGG
62 AGGGGGTTAAGATCTGGAAATTCAG
* * ***
4330218 TCTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-TATTCTTCGATCTGTTTTTTTACTG-TATA
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGA-CCTGTACT-TTCGATCTGTTTCCCTACTGCT-TA
4330281 GGGGGTTAAGATCTGGAAATTCAG
63 GGGGGTTAAGATCTGGAAATTCAG
* * * * *
4330305 CCTGTTACCCTACTGCTTAGGGGTTTAAGATCTGTAAATTTAG-CCTGTTACCCTACTGCTTAGG
1 CCTGTTACCCTACTGCTTAGGGGTTTAAGACCTGT-ACTTTCGATCTGTTTCCCTACTGCTTAGG
4330369 GGGTTAAG
65 GGGTTAAG
4330377 GCTTGTGGAT
Statistics
Matches: 274, Mismatches: 39, Indels: 37
0.78 0.11 0.11
Matches are distributed among these distances:
83 1 0.00
84 1 0.00
85 5 0.02
86 159 0.58
87 97 0.35
88 10 0.04
90 1 0.00
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (86 bp):
CCTGTTACCCTACTGCTTAGGGGTTTAAGACCTGTACTTTCGATCTGTTTCCCTACTGCTTAGGG
GGTTAAGATCTGGAAATTCAG
Found at i:4331125 original size:123 final size:122
Alignment explanation
Indices: 4330906--4331162 Score: 496
Period size: 123 Copynumber: 2.1 Consensus size: 122
4330896 AATGCAGAGT
*
4330906 ATCATTTTTCTTTTTCCCGAGAGTGACCATTTTTTTTTTACACTTGGGTTGACATTGCTCATTAT
1 ATCATCTTTCTTTTTCCCGAGAGTGACCATTTTTTTTTTACACTTGGGTTGACATTGCTCATTAT
4330971 TTGTCGAGATTGTATCACTGATGAAATGTCTTGTCTTTTTGTTGAGTCCAAAGAGGTA
66 TTGTCGAGATTGTATCACTGATGAAATGTCTTGTC-TTTTGTTGAGTCCAAAGAGGTA
4331029 ATCATCTTTCTTTTTCCCGAGAGTGACCATTTTTTTTTTACACTTGGGTTGACATTGCTCATTAT
1 ATCATCTTTCTTTTTCCCGAGAGTGACCATTTTTTTTTTACACTTGGGTTGACATTGCTCATTAT
4331094 TTGTCGAGATTGTATCACTGATGAAATGTCTTGTCTTTTGTTGAGTCCAAAGAGGTA
66 TTGTCGAGATTGTATCACTGATGAAATGTCTTGTCTTTTGTTGAGTCCAAAGAGGTA
4331151 ATCATCTTTCTT
1 ATCATCTTTCTT
4331163 CAATATTTCC
Statistics
Matches: 133, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
122 34 0.26
123 99 0.74
ACGTcount: A:0.21, C:0.16, G:0.18, T:0.45
Consensus pattern (122 bp):
ATCATCTTTCTTTTTCCCGAGAGTGACCATTTTTTTTTTACACTTGGGTTGACATTGCTCATTAT
TTGTCGAGATTGTATCACTGATGAAATGTCTTGTCTTTTGTTGAGTCCAAAGAGGTA
Found at i:4331462 original size:52 final size:53
Alignment explanation
Indices: 4331365--4331478 Score: 167
Period size: 52 Copynumber: 2.2 Consensus size: 53
4331355 GCATAGCTCG
* * * *
4331365 AAATGAATAAATTAGTCAAAGGTTGCAAATGCCATAAGAAAGAAATTAACTCA
1 AAATGAATAAATTAATCAAAGATAGCAAATGCAATAAGAAAGAAATTAACTCA
* *
4331418 AAATGAATAAGTTAATCAAAGATAGC-AATGCAATAAGAAGGAAATTAACTCA
1 AAATGAATAAATTAATCAAAGATAGCAAATGCAATAAGAAAGAAATTAACTCA
4331470 AAATGAATA
1 AAATGAATA
4331479 TAGCAAATTC
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
52 33 0.60
53 22 0.40
ACGTcount: A:0.54, C:0.10, G:0.15, T:0.22
Consensus pattern (53 bp):
AAATGAATAAATTAATCAAAGATAGCAAATGCAATAAGAAAGAAATTAACTCA
Found at i:4334720 original size:26 final size:26
Alignment explanation
Indices: 4334690--4334797 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
4334680 TGAAATTCCC
4334690 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
4334716 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
*
4334742 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
4334768 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
4334794 ATCA
1 ATCA
4334798 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:4337525 original size:5 final size:5
Alignment explanation
Indices: 4337515--4337555 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
4337505 TAATGCAAAT
*
4337515 AATGC AATGC AATGC AATGC AAATGC -ATGA AATG- AATGC AA
1 AATGC AATGC AATGC AATGC -AATGC AATGC AATGC AATGC AA
4337556 AAGAAAGGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
4 7 0.22
5 20 0.62
6 5 0.16
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.20
Consensus pattern (5 bp):
AATGC
Found at i:4337538 original size:24 final size:24
Alignment explanation
Indices: 4337506--4337555 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
4337496 GGGAAAGTCT
*
4337506 AATGCAAAT-AATGCAATGCAATGC
1 AATGCAAATGAATGAAATG-AATGC
*
4337530 AATGCAAATGCATGAAATGAATGC
1 AATGCAAATGAATGAAATGAATGC
4337554 AA
1 AA
4337556 AAGAAAGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (24 bp):
AATGCAAATGAATGAAATGAATGC
Found at i:4339369 original size:3 final size:3
Alignment explanation
Indices: 4339292--4339350 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
4339282 ATAGTAGTAG
4339292 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
4339340 TAA TAA TAA TA
1 TAA TAA TAA TA
4339351 CAAAAAGCAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:4339442 original size:20 final size:20
Alignment explanation
Indices: 4339404--4339444 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
4339394 AAACAAAACC
*
4339404 ACATATAAATATATATATAT
1 ACATATAAATATACATATAT
4339424 ACATA-AAATATACACTATAT
1 ACATATAAATATACA-TATAT
4339444 A
1 A
4339445 TAATAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (20 bp):
ACATATAAATATACATATAT
Found at i:4339694 original size:12 final size:13
Alignment explanation
Indices: 4339670--4339730 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 13
4339660 GAGAGGGTAT
4339670 ATATAATATAATA
1 ATATAATATAATA
4339683 ATATAA-ATAATA
1 ATATAATATAATA
*
4339695 ATATATACATGAGA-A
1 ATATA-ATAT-A-ATA
4339710 ATAATAATAATAATA
1 AT-ATAAT-ATAATA
4339725 ATATAA
1 ATATAA
4339731 AAAAAAAAAC
Statistics
Matches: 40, Mismatches: 1, Indels: 13
0.74 0.02 0.24
Matches are distributed among these distances:
12 11 0.28
13 7 0.17
14 7 0.17
15 9 0.22
16 6 0.15
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:4340787 original size:13 final size:13
Alignment explanation
Indices: 4340769--4340794 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4340759 ATTTATTAAA
4340769 TAGTCATTATTAT
1 TAGTCATTATTAT
4340782 TAGTCATTATTAT
1 TAGTCATTATTAT
4340795 GATTTAATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (13 bp):
TAGTCATTATTAT
Found at i:4341568 original size:84 final size:84
Alignment explanation
Indices: 4341427--4341583 Score: 235
Period size: 84 Copynumber: 1.9 Consensus size: 84
4341417 ATTCATTCCT
* * *
4341427 TTTGCATTGACTTCTCAAGGTAAAAATCTGTATGTTCCTTTATTTTCTGGCATTGGGTTCCTTAG
1 TTTGCATTGAATTCTCAAGGGAAAAATCTGTATGTTCCTTTATTTTCTGGAATTGGGTTCCTTAG
4341492 AATCTTGAATTTTATTCTC
66 AATCTTGAATTTTATTCTC
* * *
4341511 TTTGCATTGAATTTTCAAGGGAAAAA-GTGTATTTTTCCTTTATTTTCTGGAATTGGGTTCCTTA
1 TTTGCATTGAATTCTCAAGGGAAAAATCTGTA-TGTTCCTTTATTTTCTGGAATTGGGTTCCTTA
*
4341575 GAATTTTGA
65 GAATCTTGA
4341584 GAGAAAAACA
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
83 4 0.06
84 61 0.94
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.46
Consensus pattern (84 bp):
TTTGCATTGAATTCTCAAGGGAAAAATCTGTATGTTCCTTTATTTTCTGGAATTGGGTTCCTTAG
AATCTTGAATTTTATTCTC
Found at i:4344165 original size:16 final size:16
Alignment explanation
Indices: 4344144--4344175 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
4344134 GTTGACTGAT
4344144 TGGAAATCAGTGGATG
1 TGGAAATCAGTGGATG
4344160 TGGAAATCAGTGGATG
1 TGGAAATCAGTGGATG
4344176 CTATTTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.38, T:0.25
Consensus pattern (16 bp):
TGGAAATCAGTGGATG
Found at i:4352044 original size:4 final size:4
Alignment explanation
Indices: 4352028--4352065 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
4352018 TAAAATTCCA
*
4352028 ATGT ATGT AATGT ATGT AAGT ATGT ATGT ATG- ATGT AT
1 ATGT ATGT -ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
4352066 AGGTCTCAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 3 0.10
4 23 0.77
5 4 0.13
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.45
Consensus pattern (4 bp):
ATGT
Found at i:4356702 original size:21 final size:22
Alignment explanation
Indices: 4356659--4356717 Score: 66
Period size: 21 Copynumber: 2.6 Consensus size: 22
4356649 ACTTGAAATG
4356659 TATATTTAAAATGTTTTATAATATA
1 TATATTTAAAA---TTTATAATATA
*
4356684 TATTTTTAAAATTTA-AATATA
1 TATATTTAAAATTTATAATATA
*
4356705 TATATTTGAAATT
1 TATATTTAAAATT
4356718 ATTTTTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 17 0.55
22 4 0.13
25 10 0.32
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (22 bp):
TATATTTAAAATTTATAATATA
Found at i:4356831 original size:9 final size:9
Alignment explanation
Indices: 4356801--4356876 Score: 66
Period size: 9 Copynumber: 8.1 Consensus size: 9
4356791 TTATTATTAG
4356801 TTTTATAATA
1 TTTTA-AATA
4356811 TTTT-AA-A
1 TTTTAAATA
4356818 TTTTAAATA
1 TTTTAAATA
*
4356827 TTTTAAATTTG
1 TTTTAAA--TA
4356838 TTTTATAATA
1 TTTTA-AATA
4356848 TTTTAAATA
1 TTTTAAATA
* *
4356857 TTCTTAATTT
1 TT-TTAAATA
4356867 TTTTAAATA
1 TTTTAAATA
4356876 T
1 T
4356877 ATTATTTTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
7 5 0.09
8 4 0.07
9 20 0.37
10 17 0.31
11 6 0.11
12 2 0.04
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (9 bp):
TTTTAAATA
Found at i:4356848 original size:21 final size:19
Alignment explanation
Indices: 4356800--4356855 Score: 73
Period size: 16 Copynumber: 3.0 Consensus size: 19
4356790 TTTATTATTA
4356800 GTTTTATAATATTTTAAA-
1 GTTTTATAATATTTTAAAT
4356818 -TTTTA-AATATTTTAAATTT
1 GTTTTATAATATTTTAAA--T
4356837 GTTTTATAATATTTTAAAT
1 GTTTTATAATATTTTAAAT
4356856 ATTCTTAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
16 11 0.33
17 5 0.15
19 1 0.03
20 5 0.15
21 11 0.33
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.59
Consensus pattern (19 bp):
GTTTTATAATATTTTAAAT
Found at i:4356851 original size:30 final size:28
Alignment explanation
Indices: 4356817--4356876 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 28
4356807 AATATTTTAA
4356817 ATTTTAAATATT-TTAAATTTGTTTTATAAT
1 ATTTTAAATATTCTT-AATTT-TTTTA-AAT
4356847 ATTTTAAATATTCTTAATTTTTTTAAAT
1 ATTTTAAATATTCTTAATTTTTTTAAAT
4356875 AT
1 AT
4356877 ATTATTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
28 5 0.17
29 5 0.17
30 17 0.59
31 2 0.07
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (28 bp):
ATTTTAAATATTCTTAATTTTTTTAAAT
Found at i:4356885 original size:18 final size:19
Alignment explanation
Indices: 4356848--4356885 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
4356838 TTTTATAATA
*
4356848 TTTTAAATATTCTTAATTT
1 TTTTAAATATTATTAATTT
4356867 TTTTAAATA-TATT-ATTT
1 TTTTAAATATTATTAATTT
4356884 TT
1 TT
4356886 AAAGATATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTAAATATTATTAATTT
Done.