Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 150 of 425
Found at i:45621830 original size:38 final size:38
Alignment explanation
Indices: 45621779--45621933 Score: 247
Period size: 38 Copynumber: 4.0 Consensus size: 38
45621769 GATGTGTATG
45621779 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
45621817 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
** *
45621855 AATGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGC
1 AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
* *
45621893 AATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 AA-TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
45621933 A
1 A
45621934 TTTGTGCGGG
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 75 0.69
39 24 0.22
40 10 0.09
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.22
Consensus pattern (38 bp):
AATGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGC
Found at i:45621957 original size:40 final size:40
Alignment explanation
Indices: 45621798--45621977 Score: 145
Period size: 38 Copynumber: 4.6 Consensus size: 40
45621788 ATTGTGATAT
* * *** *
45621798 CCGGGCTAAG-CCCGAAGGCA-ATGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * ** *
45621836 CCGGGCTAAG-CCCGAAGGCA-ATGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
45621874 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
45621913 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
45621953 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
45621978 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
38 55 0.44
39 24 0.19
40 45 0.36
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:45637673 original size:39 final size:40
Alignment explanation
Indices: 45637616--45637838 Score: 285
Period size: 39 Copynumber: 5.6 Consensus size: 40
45637606 AACCCAAGTA
*
45637616 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * *
45637655 CCTTC-GGTCTTAGCCCGGATATAGTC-ACTAGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
* *
45637694 CCTTCGGGACTTGGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATG
* *
45637737 CCTTCGGGACTTTGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
*
45637777 CCTTCGGCACTTAGCCCGGATATAG-AACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
45637816 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
45637839 CGTCCGAATA
Statistics
Matches: 159, Mismatches: 16, Indels: 18
0.82 0.08 0.09
Matches are distributed among these distances:
38 6 0.04
39 66 0.42
40 52 0.33
43 34 0.21
44 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:45645518 original size:39 final size:40
Alignment explanation
Indices: 45645464--45645685 Score: 328
Period size: 39 Copynumber: 5.6 Consensus size: 40
45645454 AACCCAAGTA
*
45645464 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* *
45645503 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
45645543 CCTTCGGGACTTAGCCCGG-TATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATG
* *
45645585 CCTTCGGGACTTAGCCCGGATATAG-TACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
45645624 CCTTCGGGACTTAGCCCGGATATAG-AACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
45645663 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
45645686 CATCGAATAA
Statistics
Matches: 167, Mismatches: 9, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
38 1 0.01
39 89 0.53
40 40 0.24
41 1 0.01
42 31 0.19
43 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:45647806 original size:16 final size:16
Alignment explanation
Indices: 45647785--45647817 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
45647775 CGACACATCC
*
45647785 CGAAATGTCGAAAAGT
1 CGAAATGCCGAAAAGT
45647801 CGAAATGCCGAAAAGT
1 CGAAATGCCGAAAAGT
45647817 C
1 C
45647818 AAAAGTTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.15
Consensus pattern (16 bp):
CGAAATGCCGAAAAGT
Found at i:45648074 original size:29 final size:29
Alignment explanation
Indices: 45648038--45648100 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
45648028 ACATGGCCTG
*
45648038 GAAT-TGATTTGGGCC-AGATGGGCCATAT
1 GAATGTGATTCGGGCCTAG-TGGGCCATAT
45648066 GAATGTGATTCGGGCCTAGTGGGCCATAT
1 GAATGTGATTCGGGCCTAGTGGGCCATAT
*
45648095 GCATGT
1 GAATGT
45648101 ATGTAGACTT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 4 0.13
29 25 0.81
30 2 0.06
ACGTcount: A:0.22, C:0.16, G:0.33, T:0.29
Consensus pattern (29 bp):
GAATGTGATTCGGGCCTAGTGGGCCATAT
Found at i:45649827 original size:40 final size:40
Alignment explanation
Indices: 45649772--45649979 Score: 249
Period size: 40 Copynumber: 5.2 Consensus size: 40
45649762 TGAATGATAC
* *
45649772 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
45649812 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
45649852 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
45649892 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
45649932 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
45649972 CC-GGCTAA
1 CCGGGCTAA
45649980 ATTTCGAAGA
Statistics
Matches: 144, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 136 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:45651861 original size:17 final size:18
Alignment explanation
Indices: 45651828--45651861 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
45651818 TTTAAAGAAG
45651828 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
45651846 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
45651862 CTTCAACGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:45653886 original size:22 final size:20
Alignment explanation
Indices: 45653845--45653887 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
45653835 GGTTTGCATA
*
45653845 TGTTGGGATATTGCATATAT
1 TGTTGGGATATTGCAGATAT
45653865 TGTTGGGATATTGTGCAGATAT
1 TGTTGGGATA-T-TGCAGATAT
45653887 T
1 T
45653888 TGAGCAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 1 0.05
22 9 0.45
ACGTcount: A:0.23, C:0.05, G:0.28, T:0.44
Consensus pattern (20 bp):
TGTTGGGATATTGCAGATAT
Found at i:45665207 original size:32 final size:33
Alignment explanation
Indices: 45665171--45665237 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
45665161 GATACTAAAT
*
45665171 TGTAATGGGCTAA-GCCCACA-CTGATACTGTAC
1 TGTAATGGGCTAAGGCCCACATC-GATACTGGAC
45665203 TGTAATGGGCTAAGGCCCACATCGATACTGGAC
1 TGTAATGGGCTAAGGCCCACATCGATACTGGAC
45665236 TG
1 TG
45665238 ATACTGAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 13 0.41
33 18 0.56
34 1 0.03
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (33 bp):
TGTAATGGGCTAAGGCCCACATCGATACTGGAC
Found at i:45669078 original size:2 final size:2
Alignment explanation
Indices: 45669071--45669115 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
45669061 GAGTGATTAG
* * *
45669071 TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TC TA TA TA CA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45669113 TA T
1 TA T
45669116 GTGTGTTTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:45676337 original size:23 final size:23
Alignment explanation
Indices: 45676310--45676353 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
45676300 TATGAATAAA
*
45676310 ATTAAATTTA-AATATATAAATAC
1 ATTAAATTAACAATAT-TAAATAC
45676333 ATTAAATTAACAATATTAAAT
1 ATTAAATTAACAATATTAAAT
45676354 GTACTACAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (23 bp):
ATTAAATTAACAATATTAAATAC
Found at i:45679047 original size:30 final size:29
Alignment explanation
Indices: 45679011--45679068 Score: 98
Period size: 30 Copynumber: 2.0 Consensus size: 29
45679001 CGGAAGTTGT
*
45679011 GGCACTAAGTGTGCGGTTTAAACTAGCTTG
1 GGCACTAAGTGTGCGATTT-AACTAGCTTG
45679041 GGCACTAAGTGTGCGATTTAACTAGCTT
1 GGCACTAAGTGTGCGATTTAACTAGCTT
45679069 CGGCTAATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 9 0.33
30 18 0.67
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (29 bp):
GGCACTAAGTGTGCGATTTAACTAGCTTG
Found at i:45695857 original size:40 final size:40
Alignment explanation
Indices: 45695812--45695950 Score: 140
Period size: 40 Copynumber: 3.5 Consensus size: 40
45695802 GGATATAACG
45695812 ACTCGCTCAAATGCCTTCGGGAC-AAAGCCC-GGTTATAGTA
1 ACTCGCTCAAATGCCTTCGGGACTAAA-CCCGGGTT-TAGTA
** *
45695852 ACTCGCTTGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCTCAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* * * * *
45695892 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCTCAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
* * *
45695931 ACTCGCACGAACGCCTTCGG
1 ACTCGCTCAAATGCCTTCGG
45695951 ATCTTAGTCC
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 33 0.38
40 47 0.55
41 6 0.07
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCTCAAATGCCTTCGGGACTAAACCCGGGTTTAGTA
Found at i:45695933 original size:79 final size:81
Alignment explanation
Indices: 45695787--45696003 Score: 205
Period size: 79 Copynumber: 2.7 Consensus size: 81
45695777 AATCACGTAT
*** * **
45695787 CTTCGGAAT-TTAA-CCGGATATAACGACTCGCTCAAATGCCTTCGGGACAAAGCCCGG-TTATA
1 CTTCGG-ATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATA
** *
45695849 GTAACTCGCTTGAATGC
65 GTAACTCGCACGAACGC
* *
45695866 CTTCGGGA-CTTAACCCGGGTTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATT-TA
1 CTTC-GGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATA
*
45695928 TTAACTCGCACGAACGC
65 GTAACTCGCACGAACGC
** * * *
45695945 CTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCTTTCGGGACTTAGCCCGGA
1 CTTCGGATCTTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
45696004 CATCATTCAA
Statistics
Matches: 112, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
78 3 0.03
79 59 0.53
80 50 0.45
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
CTTCGGATCTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTATAG
TAACTCGCACGAACGC
Found at i:45707180 original size:7 final size:7
Alignment explanation
Indices: 45707168--45707197 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
45707158 AGTCTAATAC
45707168 ATATAAT
1 ATATAAT
45707175 ATATAAT
1 ATATAAT
45707182 ATATAAT
1 ATATAAT
45707189 ATATAAT
1 ATATAAT
45707196 AT
1 AT
45707198 TATTTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
ATATAAT
Found at i:45708265 original size:27 final size:28
Alignment explanation
Indices: 45708225--45708287 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
45708215 ATTACTCGTG
45708225 AATTTTTATAATAT-TAATTTTATTATA-
1 AATTTTTATAATATCTAATTTT-TTATAT
* * *
45708252 AGTTTTTATCATATCTGATTTTTTATAT
1 AATTTTTATAATATCTAATTTTTTATAT
45708280 AATTTTTA
1 AATTTTTA
45708288 AAATTATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
27 17 0.57
28 13 0.43
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (28 bp):
AATTTTTATAATATCTAATTTTTTATAT
Found at i:45713195 original size:65 final size:65
Alignment explanation
Indices: 45713116--45713245 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
45713106 CAGTCCCATG
*
45713116 CATCAGATAATAATAACATGGCATGCATTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCT
1 CATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCT
45713181 CATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCT
1 CATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCT
45713246 TAACCCTAGG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.24
Consensus pattern (65 bp):
CATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCT
Found at i:45715559 original size:68 final size:63
Alignment explanation
Indices: 45715412--45715591 Score: 175
Period size: 68 Copynumber: 2.8 Consensus size: 63
45715402 ATATAGTTCG
*
45715412 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCAATTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCAATATATCTCGTA
* * *
45715475 GCTCTCTTGT-CTACATGGTGTACACAT-AGTATCACCCATGTGACCTAGCTACATCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGTGACCTAGC--CA--AT-ATATC
*
45715538 TTGTA
59 TCGTA
* ** ** **
45715543 GCTCTCTTGTACACATGATGTGCACTCAACACCATACATGTGACCTAGC
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGC
45715592 TACATACTAT
Statistics
Matches: 96, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
62 1 0.01
63 43 0.45
64 1 0.01
65 2 0.02
67 3 0.03
68 45 0.47
69 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCAATATATCTCGTA
Found at i:45728200 original size:22 final size:21
Alignment explanation
Indices: 45728147--45728200 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 21
45728137 TATTGCCATG
45728147 GATGTATTATGCCAATATAATT
1 GATGT-TTATGCCAATATAATT
*
45728169 GATTGATTATGCCAATATAATT
1 GA-TGTTTATGCCAATATAATT
45728191 GCATGTTTAT
1 G-ATGTTTAT
45728201 ATGTTAAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 25 0.89
23 3 0.11
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (21 bp):
GATGTTTATGCCAATATAATT
Found at i:45734377 original size:13 final size:13
Alignment explanation
Indices: 45734361--45734386 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45734351 ATTTTTCAGG
45734361 TCATTTTTATTTT
1 TCATTTTTATTTT
45734374 TCATTTTTATTTT
1 TCATTTTTATTTT
45734387 GGAGAAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (13 bp):
TCATTTTTATTTT
Found at i:45734423 original size:50 final size:52
Alignment explanation
Indices: 45734368--45734474 Score: 155
Period size: 51 Copynumber: 2.1 Consensus size: 52
45734358 AGGTCATTTT
* *
45734368 TATTTTTC-ATTTTTATTTTGGAGAAAACAACATTCATTTCCAAATGATTCC
1 TATTTTTCTATTTTCATTTTGGAGAAAACAACAATCATTTCCAAATGATTCC
* * *
45734419 -ATTTTTCTATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGTTTCC
1 TATTTTTCTATTTTCATTTTGGAGAAAACAACAATCATTTCCAAATGATTCC
45734470 TATTT
1 TATTT
45734475 CTCCATTTCT
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
50 7 0.14
51 38 0.78
52 4 0.08
ACGTcount: A:0.30, C:0.16, G:0.07, T:0.47
Consensus pattern (52 bp):
TATTTTTCTATTTTCATTTTGGAGAAAACAACAATCATTTCCAAATGATTCC
Found at i:45735474 original size:22 final size:21
Alignment explanation
Indices: 45735437--45735480 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
45735427 CCCAAAACTA
*
45735437 ATTACCCTTAACCCATAACCC
1 ATTACACTTAACCCATAACCC
45735458 ATTACACTTAAACCCATAACCC
1 ATTACACTT-AACCCATAACCC
45735480 A
1 A
45735481 ATACCTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.23
Consensus pattern (21 bp):
ATTACACTTAACCCATAACCC
Found at i:45736708 original size:21 final size:21
Alignment explanation
Indices: 45736667--45736707 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
45736657 ATATTATATT
*
45736667 ATATTATATTATTAGTTTTTA
1 ATATTATAGTATTAGTTTTTA
45736688 ATATTATTAGTATTAGTTTT
1 ATATTA-TAGTATTAGTTTT
45736708 AGCTTCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (21 bp):
ATATTATAGTATTAGTTTTTA
Found at i:45736881 original size:37 final size:36
Alignment explanation
Indices: 45736819--45736937 Score: 114
Period size: 37 Copynumber: 3.2 Consensus size: 36
45736809 ATATTATGTG
* * * *
45736819 TATATTCTTTTAATAGATATCATGTATATATTTT-A
1 TATATTATTTTTATATATATTATGTATATATTTTAA
*
45736854 TATATTATTTTTAACTTTATATTATGTATATATTTTTAA
1 TATATTATTTTT-A-TATATATTATGTATATA-TTTTAA
* * *
45736893 TATTTTATTTTTATATATATTAGGTACATATTTTCAA
1 TATATTATTTTTATATATATTATGTATATATTTT-AA
45736930 TACTATTA
1 TA-TATTA
45736938 ATGCACCTTT
Statistics
Matches: 68, Mismatches: 10, Indels: 9
0.78 0.11 0.10
Matches are distributed among these distances:
35 10 0.15
36 5 0.07
37 32 0.47
38 9 0.13
39 12 0.18
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (36 bp):
TATATTATTTTTATATATATTATGTATATATTTTAA
Found at i:45736911 original size:26 final size:25
Alignment explanation
Indices: 45736845--45736913 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 25
45736835 ATATCATGTA
45736845 TATATTTTATATATTATTTTTAACTT
1 TATATTTTATATA-TATTTTTAACTT
* *
45736871 TATATTATGTATATATTTTTAA-TAT
1 TATATTTTATATATATTTTTAACT-T
*
45736896 TTTATTTTTATATATATT
1 TATA-TTTTATATATATT
45736914 AGGTACATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.03
25 13 0.36
26 22 0.61
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (25 bp):
TATATTTTATATATATTTTTAACTT
Found at i:45737103 original size:21 final size:20
Alignment explanation
Indices: 45737070--45737108 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
45737060 ATTCATGATT
*
45737070 TTATTTCGTGTTTAATATTA
1 TTATTTCATGTTTAATATTA
45737090 TTATTATCATGTTTAATAT
1 TTATT-TCATGTTTAATAT
45737109 CATGTGCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.59
Consensus pattern (20 bp):
TTATTTCATGTTTAATATTA
Found at i:45741044 original size:30 final size:29
Alignment explanation
Indices: 45740950--45741051 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
45740940 TATAGTGAAT
* * *
45740950 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
45740979 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
45741007 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
45741037 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
45741052 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:45743900 original size:22 final size:22
Alignment explanation
Indices: 45743875--45743919 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
45743865 ATTCATGGCT
45743875 AACATTCATTCGTCATTTATTC
1 AACATTCATTCGTCATTTATTC
* *
45743897 AACATTCGTTTGTCATTTATTC
1 AACATTCATTCGTCATTTATTC
45743919 A
1 A
45743920 TTCATCCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.07, T:0.47
Consensus pattern (22 bp):
AACATTCATTCGTCATTTATTC
Found at i:45746001 original size:39 final size:39
Alignment explanation
Indices: 45745926--45746108 Score: 312
Period size: 39 Copynumber: 4.7 Consensus size: 39
45745916 CCGCACAAAG
*
45745926 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
45745966 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
45746005 GCCTTCGGGCTTAGCCCGGGTATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
45746044 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
45746083 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
45746109 TCGAACATTC
Statistics
Matches: 134, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 125 0.93
40 9 0.07
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:45755815 original size:73 final size:71
Alignment explanation
Indices: 45755634--45755860 Score: 269
Period size: 73 Copynumber: 3.1 Consensus size: 71
45755624 AAATTTCTAT
* *
45755634 TTTTC-AAAAATCAACTCATATTGCGAGAGGTGTGTTGAGCCTCGGTTCACATGCCGAGGCATTT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-TCACA--CCGAGGTATTT
*
45755698 CCAAATTCTG
63 -CAAATTATG
* *
45755708 TTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTCTC
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTCACACCGAGGTATT-TC
*
45755773 AATTTATG
64 AAATTATG
* * **
45755781 -TTTCAAAAACATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGAGGTATTTCT
1 TTTTCAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACACCGAGGTATTTC-
*
45755845 AAATTCTG
64 AAATTATG
45755853 TTTTCAAA
1 TTTTCAAA
45755861 CTATGTTTTC
Statistics
Matches: 134, Mismatches: 13, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
71 2 0.01
72 27 0.20
73 55 0.41
74 6 0.04
75 42 0.31
76 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (71 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTCACACCGAGGTATTTCAA
ATTATG
Found at i:45755900 original size:158 final size:157
Alignment explanation
Indices: 45755706--45756262 Score: 760
Period size: 158 Copynumber: 3.5 Consensus size: 157
45755696 TTCCAAATTC
45755706 TGTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTC
1 TGTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTC
45755771 TCAATTTATGTTTCAAAAACATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGA
66 TCAATTTATGTTTCAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGA
**
45755836 GGTA-TTTCTAAATTCTGTTTTCAAACTA
130 GGTATTTTC-AAATTCTGTTTTCAATTTA
45755864 TGTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTC
1 TGTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTC
45755929 TCAATTTATGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGA
66 TCAATTTATGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGA
45755994 GGTATTTTCAAATTCTGTTTTTCAATTTA
130 GGTATTTTCAAATTCTG-TTTTCAATTTA
* * *
45756023 TGTTTTCCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TGGCTCACACGCCGAGG
1 TGTTTTCC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACA--CTGAGG
* * * * **
45756087 TATTTTCAATTTCTGTTCGTC-AAAAATCAACTCATATTGCTAGAAGTGAGTTGAGTCTCGGGCC
61 TATTCTCAATTTATGTT--TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC-GG--
* * *
45756151 ACATGCCGAGGTCTTTTCAAATTCTGTTTTTAATTTC
121 ACATGCCGAGGTATTTTCAAATTCTGTTTTCAATTTA
* * * * *
45756188 TGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGACACGCTGAGGTA
1 TG-TTTTC--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTA
*
45756253 TTTTCAATTT
63 TTCTCAATTT
45756263 CTGCTTTTCA
Statistics
Matches: 361, Mismatches: 21, Indels: 28
0.88 0.05 0.07
Matches are distributed among these distances:
158 136 0.38
159 26 0.07
160 2 0.01
161 41 0.11
163 54 0.15
164 19 0.05
165 13 0.04
166 68 0.19
167 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (157 bp):
TGTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTC
TCAATTTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGAG
GTATTTTCAAATTCTGTTTTCAATTTA
Found at i:45755943 original size:85 final size:82
Alignment explanation
Indices: 45755777--45756352 Score: 295
Period size: 88 Copynumber: 6.9 Consensus size: 82
45755767 ATTCTCAATT
*
45755777 TATGTTTCAAAAACATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGAGGTATT
1 TATGTTTCCAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGAGGTATT
*
45755842 TCTAAA-TTCTGTTTTCAAA
65 TC-AAATTTATG-TTTCAAA
* * ** *
45755861 CTATGTTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTA
1 -TATG-TTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC-GGACATGCCGAGGTA
45755926 TTCTC-AATTTATGTTTC--A
63 TT-TCAAATTTATGTTTCAAA
45755944 -A-------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGAGGTATTT
1 TATGTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGAGGTA-TT
* * *
45756001 TCAAATTCTGTTTTTCAATT
65 TCAAATT-TATGTTTCAA-A
* * * *
45756021 TATGTTTTCCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTCACACGCCGAG
1 TATG-TTTCC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGG---ACATGCCGAG
*
45756086 GTATTTTC-AATTTCTG-TTC---
60 GTA-TTTCAAATTTATGTTTCAAA
* * **
45756105 ---G--T-CAAAAATCAACTCATATTGCTAGAAGTGAGTTGAGTCTCGGGCCACATGCCGAGGTC
1 TATGTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC-GG--ACATGCCGAGGT-
* * * *
45756164 TTTTCAAA-TTCTGTTTTTAATT
62 ATTTCAAATTTATG-TTTCAA-A
* * * * * *
45756186 TCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGACACGCTGAGG
1 TATG--TTTC--CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTC-GGACATGCCGAGG
* *
45756251 TATTTTC-AATTTCTGCTTTTCAATTTC
61 TA-TTTCAAATTTATG--TTTCAA---A
* * * * *
45756278 TATTTTTCAAAAAATCAACTCATATTTCGACAGGTGAGTT-AAGCCTCGGGTCACACGCCGAGGT
1 TATGTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAA-CCTC-GG--ACATGCCGAGGT
*
45756342 ATTTCCAATTT
62 ATTTCAAATTT
45756353 CAATTTTTCA
Statistics
Matches: 392, Mismatches: 47, Indels: 99
0.73 0.09 0.18
Matches are distributed among these distances:
72 13 0.03
73 43 0.11
74 6 0.02
75 54 0.14
76 4 0.01
77 3 0.01
78 2 0.01
81 2 0.01
83 1 0.00
84 1 0.00
85 43 0.11
86 25 0.06
87 3 0.01
88 79 0.20
89 25 0.06
90 31 0.08
91 54 0.14
92 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (82 bp):
TATGTTTCCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGAGGTATTT
CAAATTTATGTTTCAAA
Found at i:45756112 original size:77 final size:75
Alignment explanation
Indices: 45756012--45756178 Score: 196
Period size: 75 Copynumber: 2.2 Consensus size: 75
45756002 CAAATTCTGT
* * * *
45756012 TTTTCAATTTATGTTTTCCAAAAAAATCAACTCATATTG-TGAGAGGTGAGTTGAGCCT-TGGCT
1 TTTTCAATTTCTGTTGTCC--AAAAATCAACTCATATTGCT-AGAAGTGAGTTGAGCCTCGGGC-
45756075 CACACGCCGAGGTA
62 CACACGCCGAGGTA
*
45756089 TTTTCAATTTCTGTTCGT-CAAAAATCAACTCATATTGCTAGAAGTGAGTTGAGTCTCGGGCCAC
1 TTTTCAATTTCTGTT-GTCCAAAAATCAACTCATATTGCTAGAAGTGAGTTGAGCCTCGGGCCAC
* *
45756153 ATGCCGAGGTC
65 ACGCCGAGGTA
*
45756164 TTTTCAAATTCTGTT
1 TTTTCAATTTCTGTT
45756179 TTTAATTTCT
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
75 59 0.75
76 4 0.05
77 15 0.19
78 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (75 bp):
TTTTCAATTTCTGTTGTCCAAAAATCAACTCATATTGCTAGAAGTGAGTTGAGCCTCGGGCCACA
CGCCGAGGTA
Found at i:45756123 original size:75 final size:75
Alignment explanation
Indices: 45756033--45756178 Score: 206
Period size: 75 Copynumber: 1.9 Consensus size: 75
45756023 TGTTTTCCAA
* *
45756033 AAAAATCAACTCATATTG-TGAGAGGTGAGTTGAGCCT-TGGCTCACACGCCGAGGTATTTTCAA
1 AAAAATCAACTCATATTGCT-AGAAGTGAGTTGAGCCTCGGGC-CACACGCCGAGGTATTTTCAA
*
45756096 TTTCTGTTCGTC
64 ATTCTGTTCGTC
* * *
45756108 AAAAATCAACTCATATTGCTAGAAGTGAGTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAAT
1 AAAAATCAACTCATATTGCTAGAAGTGAGTTGAGCCTCGGGCCACACGCCGAGGTATTTTCAAAT
45756173 TCTGTT
66 TCTGTT
45756179 TTTAATTTCT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
75 59 0.94
76 4 0.06
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCTAGAAGTGAGTTGAGCCTCGGGCCACACGCCGAGGTATTTTCAAAT
TCTGTTCGTC
Found at i:45756284 original size:14 final size:14
Alignment explanation
Indices: 45756253--45756287 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
45756243 CGCTGAGGTA
*
45756253 TTTTCAATTTCTGC
1 TTTTCAATTTCTAC
*
45756267 TTTTCAATTTCTAT
1 TTTTCAATTTCTAC
45756281 TTTTCAA
1 TTTTCAA
45756288 AAAATCAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.17, G:0.03, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:45756292 original size:254 final size:254
Alignment explanation
Indices: 45755939--45756399 Score: 694
Period size: 254 Copynumber: 1.8 Consensus size: 254
45755929 TCAATTTATG
* *
45755939 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCGGACATGCCGAGGTATTTTCA
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCACGGACACGCCGAGGTATTTTCA
* * * *
45756004 AATTCTGTTTTTCAATTTATGTTTTCCAAAAAAATCAACTCATATTGT-GAGAGGTGAGTTGAGC
66 AATTCTGCTTTTCAATTTATATTTTCCAAAAAAATCAACTCATATT-TCGACAGGTGAGTTAAGC
* * **
45756068 CTTGGCTCACACGCCGAGGTATTTTCAATTTCTGTTCGTC-AAAAATCAACTCATATTGCTAGAA
130 CTCGGCTCACACGCCGAGGTATTTCCAATTTCAATTCGTCAAAAAATCAACTCATATTGCTAGAA
45756132 GTGAGTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATTCTGTTTTTAATTTCTGTT
195 GTGAGTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATTCTGTTTTTAATTTCTGTT
* *
45756192 TTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGGACACGCTGAGGTATTTT
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCAC-GGACACGCCGAGGTATTTT
* * *
45756257 CAATTTCTGCTTTTCAATTTCTATTTTTC-AAAAAATCAACTCATATTTCGACAGGTGAGTTAAG
64 CAAATTCTGCTTTTCAATTTATATTTTCCAAAAAAATCAACTCATATTTCGACAGGTGAGTTAAG
* **
45756321 CCTCGGGTCACACGCCGAGGTATTTCCAATTTCAATTTTTCAAAAAAATCAACTCATATTGCTAG
129 CCTCGGCTCACACGCCGAGGTATTTCCAATTTCAATTCGTC-AAAAAATCAACTCATATTGCTAG
*
45756386 AGGTGAGTTGAGTC
193 AAGTGAGTTGAGTC
45756400 CTAGGTCACA
Statistics
Matches: 184, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
253 5 0.03
254 103 0.56
255 41 0.22
256 35 0.19
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (254 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCACGGACACGCCGAGGTATTTTCA
AATTCTGCTTTTCAATTTATATTTTCCAAAAAAATCAACTCATATTTCGACAGGTGAGTTAAGCC
TCGGCTCACACGCCGAGGTATTTCCAATTTCAATTCGTCAAAAAATCAACTCATATTGCTAGAAG
TGAGTTGAGTCTCGGGCCACATGCCGAGGTCTTTTCAAATTCTGTTTTTAATTTCTGTT
Found at i:45756361 original size:90 final size:89
Alignment explanation
Indices: 45756089--45756363 Score: 331
Period size: 88 Copynumber: 3.1 Consensus size: 89
45756079 CGCCGAGGTA
** * * *
45756089 TTTTCAATTTCTGTTCGTC-AAAAATCAACTCATATTGCTAGAAGTGAGTTGAGTCTCGGGCCAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CAC
* * *
45756153 ATGCCGAGGTCTTTTCAAATTCTGT
65 ACGCCGAGGTATTTTCAATTTCTGT
*
45756178 TTTT-AATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCACGGG-A
1 TTTTCAATTTCTGTTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCA
* *
45756241 CACGCTGAGGTATTTTCAATTTCTGC
64 CACGCCGAGGTATTTTCAATTTCTGT
* * * *
45756267 TTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTTCGACAGGTGAGTTAAGCCTCGGGTCAC
1 TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CAC
* **
45756332 ACGCCGAGGTATTTCCAATTTCAAT
65 ACGCCGAGGTATTTTCAATTTCTGT
45756357 TTTTCAA
1 TTTTCAA
45756364 AAAAATCAAC
Statistics
Matches: 159, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
88 50 0.31
89 30 0.19
90 42 0.26
91 37 0.23
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (89 bp):
TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACA
CGCCGAGGTATTTTCAATTTCTGT
Found at i:45758129 original size:3 final size:3
Alignment explanation
Indices: 45758121--45758289 Score: 62
Period size: 3 Copynumber: 55.0 Consensus size: 3
45758111 TTTAATTACT
** * * *
45758121 TTA TTA TTA AAA TTAA TTA TT- TTA GTA TTA TTA TTA GTA TTA GTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * *
45758166 CTA TTCA TATA CATA TATA TTA TCA TTA TTG TTA CTA TTA CTA TTA TTAA
1 TTA TT-A T-TA -TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
* *
45758216 TTA TCGTA TTA TTA CTA TTA TT- TCT- TTA TTT TTA -TA TTA -TA TTA
1 TTA T--TA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
* * *
45758260 -TA TTA TTA GTTT TTA CTA TTA TTA GTA TTA
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
45758290 GTTTTAGCTT
Statistics
Matches: 120, Mismatches: 31, Indels: 30
0.66 0.17 0.17
Matches are distributed among these distances:
2 10 0.08
3 90 0.75
4 16 0.13
5 4 0.03
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:45758212 original size:24 final size:23
Alignment explanation
Indices: 45758183--45758281 Score: 73
Period size: 24 Copynumber: 4.3 Consensus size: 23
45758173 TATACATATA
45758183 TATTATCATTATTGTTACTATTAC
1 TATTATCATTATTGTTA-TATTAC
* *
45758207 TATTATTAATTATCG-TATTATTAC
1 TATTA-TCATTATTGTTA-TATTAC
* *
45758231 TATTATTTCTTTATTTTTATATTA-
1 TATTA--TCATTATTGTTATATTAC
45758255 TATTAT-ATTATTAGTT-T-TTAC
1 TATTATCATTATT-GTTATATTAC
45758276 TATTAT
1 TATTAT
45758282 TAGTATTAGT
Statistics
Matches: 61, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
20 3 0.05
21 12 0.20
22 3 0.05
24 23 0.38
25 18 0.30
26 2 0.03
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (23 bp):
TATTATCATTATTGTTATATTAC
Found at i:45758480 original size:25 final size:25
Alignment explanation
Indices: 45758439--45758500 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
45758429 GTATATGTTT
45758439 TTATATAT-TATTTTTAACT-TTATA
1 TTATATATATATTTTTAA-TATTATA
*
45758463 TTATGTATATATTTTTAATATTATA
1 TTATATATATATTTTTAATATTATA
*
45758488 TTTTATATATATT
1 TTATATATATATT
45758501 AGGTACATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.24
25 25 0.76
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (25 bp):
TTATATATATATTTTTAATATTATA
Found at i:45758489 original size:14 final size:16
Alignment explanation
Indices: 45758470--45758501 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
45758460 ATATTATGTA
45758470 TATATTTT-TA-ATAT
1 TATATTTTATATATAT
45758484 TATATTTTATATATAT
1 TATATTTTATATATAT
45758500 TA
1 TA
45758502 GGTACATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TATATTTTATATATAT
Found at i:45758511 original size:36 final size:37
Alignment explanation
Indices: 45758436--45758523 Score: 99
Period size: 36 Copynumber: 2.4 Consensus size: 37
45758426 CATGTATATG
* * *
45758436 TTTTTATATATTATTTTTAACTTTATATTATGTATATA
1 TTTTTA-ATATTATTTTTAACTATATATTAGGTACATA
45758474 TTTTTAATATTATATTTT-A-TATATATTAGGTACATA
1 TTTTTAATATTAT-TTTTAACTATATATTAGGTACATA
* *
45758510 TTTTCAATACTATT
1 TTTTTAATATTATT
45758524 AATGCACCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
35 1 0.02
36 25 0.57
37 8 0.18
38 10 0.23
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (37 bp):
TTTTTAATATTATTTTTAACTATATATTAGGTACATA
Found at i:45758551 original size:2 final size:2
Alignment explanation
Indices: 45758544--45758580 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
45758534 TAATACCTAT
*
45758544 TA TA TA TA TA TA TA TA T- TA -A TA TA TG TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45758581 GTAGCATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:45758693 original size:21 final size:20
Alignment explanation
Indices: 45758660--45758698 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
45758650 ATTCATGATT
*
45758660 TTATTTCGTGTTTAATATTA
1 TTATTTCATGTTTAATATTA
45758680 TTATTATCATGTTTAATAT
1 TTATT-TCATGTTTAATAT
45758699 CATGTGCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.59
Consensus pattern (20 bp):
TTATTTCATGTTTAATATTA
Found at i:45763333 original size:23 final size:23
Alignment explanation
Indices: 45763307--45763608 Score: 299
Period size: 23 Copynumber: 13.2 Consensus size: 23
45763297 CAAAGTGCCA
* *
45763307 CACTATAATATAGCCGAAGCTAT
1 CACTATAATGTAGCCGAAGCTAC
** * *
45763330 CACTGCAACGTAGCCGAAGCTAT
1 CACTATAATGTAGCCGAAGCTAC
* * *
45763353 CACTGTAA-CTAGCCAAAGCTAC
1 CACTATAATGTAGCCGAAGCTAC
* * *
45763375 CACTGTATTGTAGCCAAAGCTAC
1 CACTATAATGTAGCCGAAGCTAC
*
45763398 CACTGA-GATGTAGCCGAAGCTAC
1 CACT-ATAATGTAGCCGAAGCTAC
* *
45763421 CACTGTATTGTAGCCGAAGCTAC
1 CACTATAATGTAGCCGAAGCTAC
* *
45763444 CACTGA-GATGTAGCCAAAGCTAC
1 CACT-ATAATGTAGCCGAAGCTAC
* * *
45763467 CATTGTATTGTAGCCGAAGCTAC
1 CACTATAATGTAGCCGAAGCTAC
*
45763490 CACTGA-GATGTAGCCGAAGCTAC
1 CACT-ATAATGTAGCCGAAGCTAC
*
45763513 CACTATATTGTAGCCGAAGCTAC
1 CACTATAATGTAGCCGAAGCTAC
* *
45763536 CACTGTATTGTAGCCGAAGCTAC
1 CACTATAATGTAGCCGAAGCTAC
*
45763559 CACTGAT-ATGTAGCCAAAGCTAC
1 CACT-ATAATGTAGCCGAAGCTAC
*
45763582 CACTATATTGTAGCCGAAGCTAC
1 CACTATAATGTAGCCGAAGCTAC
45763605 CACT
1 CACT
45763609 GAAATGTTGC
Statistics
Matches: 232, Mismatches: 38, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
22 21 0.09
23 210 0.91
24 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (23 bp):
CACTATAATGTAGCCGAAGCTAC
Found at i:45763425 original size:46 final size:46
Alignment explanation
Indices: 45763317--45763609 Score: 389
Period size: 46 Copynumber: 6.4 Consensus size: 46
45763307 CACTATAATA
* * ** * *
45763317 TAGCCGAAGCTATCACTGCAACGTAGCCGAAGCTATCACTGTA-A-C
1 TAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTG-AGATG
* *
45763362 TAGCCAAAGCTACCACTGTATTGTAGCCAAAGCTACCACTGAGATG
1 TAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATG
45763408 TAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATG
1 TAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATG
* *
45763454 TAGCCAAAGCTACCATTGTATTGTAGCCGAAGCTACCACTGAGATG
1 TAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATG
* *
45763500 TAGCCGAAGCTACCACTATATTGTAGCCGAAGCTACCACTGTA-TTG
1 TAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTG-AGATG
* *
45763546 TAGCCGAAGCTACCACTG-ATATGTAGCCAAAGCTACCACT-ATATTG
1 TAGCCGAAGCTACCACTGTAT-TGTAGCCGAAGCTACCACTGAGA-TG
45763592 TAGCCGAAGCTACCACTG
1 TAGCCGAAGCTACCACTG
45763610 AAATGTTGCC
Statistics
Matches: 223, Mismatches: 19, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
44 2 0.01
45 37 0.17
46 183 0.82
47 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGAGATG
Found at i:45763464 original size:69 final size:68
Alignment explanation
Indices: 45763307--45763615 Score: 372
Period size: 69 Copynumber: 4.5 Consensus size: 68
45763297 CAAAGTGCCA
* * * * * * **
45763307 CACTATAATATAGCCGAAGCTATCACTGCAACGTAGCCGAAGCTATCACTG-TAACTAGCCAAAG
1 CACTATATTGTAGCCGAAGCTACCACTGTAATGTAGCCGAAGCTACCACTGAT-TGTAGCCAAAG
45763371 CTAC
65 CTAC
* * *
45763375 CACTGTATTGTAGCCAAAGCTACCACTG-AGATGTAGCCGAAGCTACCACTGTATTGTAGCCGAA
1 CACTATATTGTAGCCGAAGCTACCACTGTA-ATGTAGCCGAAGCTACCACTG-ATTGTAGCCAAA
45763439 GCTAC
64 GCTAC
* * * * * *
45763444 CACTGAGA-TGTAGCCAAAGCTACCATTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCGAA
1 CACT-ATATTGTAGCCGAAGCTACCACTGTAATGTAGCCGAAGCTACCACTGA-TTGTAGCCAAA
45763508 GCTAC
64 GCTAC
*
45763513 CACTATATTGTAGCCGAAGCTACCACTGTATTGTAGCCGAAGCTACCACTGATATGTAGCCAAAG
1 CACTATATTGTAGCCGAAGCTACCACTGTAATGTAGCCGAAGCTACCACTGAT-TGTAGCCAAAG
45763578 CTAC
65 CTAC
*
45763582 CACTATATTGTAGCCGAAGCTACCACTGAAATGT
1 CACTATATTGTAGCCGAAGCTACCACTGTAATGT
45763616 TGCCTATATA
Statistics
Matches: 211, Mismatches: 22, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
67 1 0.00
68 45 0.21
69 162 0.77
70 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (68 bp):
CACTATATTGTAGCCGAAGCTACCACTGTAATGTAGCCGAAGCTACCACTGATTGTAGCCAAAGC
TAC
Found at i:45771090 original size:40 final size:40
Alignment explanation
Indices: 45770982--45771191 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
45770972 CGGGATTTAA
* * * * *
45770982 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
45771022 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
45771062 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
45771102 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
45771142 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
45771182 CCGGATATAT
1 CCGGATATAT
45771192 TTCAATGTTC
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:45773695 original size:2 final size:2
Alignment explanation
Indices: 45773688--45773720 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
45773678 ATATACAATA
45773688 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45773721 AAAAGGGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:45773999 original size:18 final size:19
Alignment explanation
Indices: 45773951--45774003 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 19
45773941 ACAATATATA
* *
45773951 ATATATAATAACAAAAATT
1 ATATATAAGAATAAAAATT
* *
45773970 -TATAAAAGAATAATAATT
1 ATATATAAGAATAAAAATT
45773988 ATATATAA-AATAAAAA
1 ATATATAAGAATAAAAA
45774004 AATATATTGG
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 21 0.78
19 6 0.22
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (19 bp):
ATATATAAGAATAAAAATT
Found at i:45774415 original size:72 final size:70
Alignment explanation
Indices: 45774262--45774544 Score: 154
Period size: 72 Copynumber: 4.1 Consensus size: 70
45774252 ACCTTTAATA
45774262 ATAATAATATATAGATAAAAAATATATAATAGTATAAAACTAATATAATATAAAATAATTATAAT
1 ATAATAATATATAGATAAAAAATATATAATAGTATAAAACTAATATAATATAAAATAATTATAAT
*
45774327 ATAAT
66 AAAAT
* *
45774332 ATGAA-AGTATATATG-TAAAAATAATATATAATA-TATATAAA-TAAT-TAATA-AATAT-ATT
1 AT-AATAATATATA-GAT-AAAA-AATATATAATAGTATA-AAACTAATATAATATAAAATAATT
45774390 ATACAAGTAAAAAT
61 AT--AA-T-AAAAT
* * * * * *** * *
45774404 ATAATAATATATAAAT-AATAATGTAAAATAATAATATTTCGTGAAAAGTAATATATAATAA--A
1 ATAATAATATATAGATAAAAAATATATAATAGT-ATAAAAC-T-AATA-TAATATAAAATAATTA
*
45774466 TAATAATAT
62 TAATAAAAT
45774475 A-AATAATATATA-ATATAAATAATATAT-A-A-TAT-AAA-TAATAT-ATAATAAAATAATTAT
1 ATAATAATATATAGATA-AAA-AATATATAATAGTATAAAACTAATATAAT-ATAAAATAATTAT
*
45774532 -ATAATAT
63 AATAAAAT
45774539 ATAATA
1 ATAATA
45774545 TAAAAATAAG
Statistics
Matches: 163, Mismatches: 23, Indels: 59
0.67 0.09 0.24
Matches are distributed among these distances:
62 2 0.01
63 9 0.06
64 11 0.07
65 7 0.04
68 7 0.04
69 16 0.10
70 32 0.20
71 29 0.18
72 35 0.21
73 4 0.02
75 7 0.04
76 3 0.02
77 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (70 bp):
ATAATAATATATAGATAAAAAATATATAATAGTATAAAACTAATATAATATAAAATAATTATAAT
AAAAT
Found at i:45774470 original size:3 final size:3
Alignment explanation
Indices: 45774452--45774616 Score: 94
Period size: 3 Copynumber: 53.7 Consensus size: 3
45774442 TCGTGAAAAG
45774452 TAA TATA TAA TAAA TAA TAA T-A TAAA TAA TATA TAA T-A TAAA TAA
1 TAA TA-A TAA T-AA TAA TAA TAA T-AA TAA TA-A TAA TAA T-AA TAA
*
45774497 TATA TAA T-A TAAA TAA TATA TAA TAA -AA TAA TTA T-A TAA TATA TAA
1 TA-A TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* *** * *
45774543 T-A TAA AAA TAA GGT TAA AAA TAA -AA CAAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA
*
45774587 TAA TAA TAA T-T TATA TATA TAA TAA TAA TA
1 TAA TAA TAA TAA TA-A TA-A TAA TAA TAA TA
45774617 GAAATAAATA
Statistics
Matches: 129, Mismatches: 14, Indels: 38
0.71 0.08 0.21
Matches are distributed among these distances:
2 15 0.12
3 82 0.64
4 32 0.25
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:45774478 original size:12 final size:12
Alignment explanation
Indices: 45774461--45774623 Score: 105
Period size: 12 Copynumber: 13.7 Consensus size: 12
45774451 GTAATATATA
45774461 ATAAATAATAAT
1 ATAAATAATAAT
45774473 ATAAATAAT-AT
1 ATAAATAATAAT
45774484 AT-AAT-ATAA-
1 ATAAATAATAAT
45774493 AT-AATATATAAT
1 ATAAATA-ATAAT
45774505 ATAAATAAT-AT
1 ATAAATAATAAT
*
45774516 ATAATAAAATAATT
1 ATAA-ATAATAA-T
45774530 ATATAATATATAAT
1 ATA-AATA-ATAAT
45774544 ATAAA-AATAAGGT
1 ATAAATAATAA--T
*
45774557 -TAAA-AATAAA
1 ATAAATAATAAT
*
45774567 ACAAATAATAAT
1 ATAAATAATAAT
45774579 A-ATAATAATAAT
1 ATA-AATAATAAT
* *
45774591 AATAATTTAT-AT
1 -ATAAATAATAAT
45774603 ATATAATAATAAT
1 ATA-AATAATAAT
*
45774616 AGAAATAA
1 ATAAATAA
45774624 ATATATAGGG
Statistics
Matches: 122, Mismatches: 10, Indels: 38
0.72 0.06 0.22
Matches are distributed among these distances:
9 7 0.06
10 4 0.03
11 25 0.20
12 53 0.43
13 17 0.14
14 11 0.09
15 5 0.04
ACGTcount: A:0.64, C:0.01, G:0.02, T:0.34
Consensus pattern (12 bp):
ATAAATAATAAT
Found at i:45774533 original size:16 final size:16
Alignment explanation
Indices: 45774264--45774544 Score: 148
Period size: 16 Copynumber: 17.2 Consensus size: 16
45774254 CTTTAATAAT
45774264 AATAATATATAGATA-A
1 AATAATATATA-ATATA
45774280 AA-AATATATAATAGTA
1 AATAATATATAATA-TA
45774296 TAA-AACTAATATAATATAA
1 -AATAA-T-ATATAATAT-A
45774315 AATAAT-TATAATATA
1 AATAATATATAATATA
* *
45774330 ATATGAAAGTATATATGTAAA
1 A-AT--AA-TATATA-ATATA
45774351 AATAATATATAATATA
1 AATAATATATAATATA
* *
45774367 TATAA-ATA-ATTAATA
1 AATAATATATAAT-ATA
45774382 AAT-ATATTATACA-AGTA
1 AATAATA-TATA-ATA-TA
45774399 AA-AATATAATAATATA
1 AATAATAT-ATAATATA
* *
45774415 TA-AATA-ATAATGT-
1 AATAATATATAATATA
*
45774428 AA-AATA-ATAATATTT
1 AATAATATATAATA-TA
**
45774443 CGTGAA-A-AGTAATATA
1 AAT-AATATA-TAATATA
45774459 TAATAA-ATAATAATATA
1 -AATAATAT-ATAATATA
45774476 AATAATATATAATATA
1 AATAATATATAATATA
45774492 AATAATATATAATATA
1 AATAATATATAATATA
45774508 AATAATATATAATA-A
1 AATAATATATAATATA
45774523 AATAATTATATAATATA
1 AATAA-TATATAATATA
45774540 TAATA
1 -AATA
45774545 TAAAAATAAG
Statistics
Matches: 214, Mismatches: 17, Indels: 66
0.72 0.06 0.22
Matches are distributed among these distances:
13 10 0.05
14 13 0.06
15 25 0.12
16 90 0.42
17 40 0.19
18 14 0.07
19 12 0.06
20 6 0.03
21 4 0.02
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.35
Consensus pattern (16 bp):
AATAATATATAATATA
Found at i:45777182 original size:54 final size:54
Alignment explanation
Indices: 45777066--45777224 Score: 225
Period size: 54 Copynumber: 3.0 Consensus size: 54
45777056 AAATACTTTG
* *
45777066 GTTTACAAAATTACCAAAATA-CCCT-GCTTTGTAAAATTACTAAAATACCCTTG
1 GTTTATAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACTAAAATACCCTTA
45777119 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTA-TCAAAATACCCTTA
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACT-AAAATACCCTTA
* * * *
45777173 GTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCT
1 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCT
45777225 CGACCTGTAA
Statistics
Matches: 96, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
53 21 0.22
54 73 0.76
55 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (54 bp):
GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTA
Found at i:45777192 original size:81 final size:80
Alignment explanation
Indices: 45777072--45777295 Score: 234
Period size: 81 Copynumber: 2.8 Consensus size: 80
45777062 TTTGGTTTAC
* * * *
45777072 AAAATTACCAAAATACCCTGCTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAA
1 AAAATTATCAAAATACCCTGATTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
**
45777137 ATACCCCTAG-TTTGT
66 ATA-CCCTAGACCTGT
* * * * * **
45777152 AAAATTATCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTGA
1 AAAATTATCAAAATACCCTGA-TTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAA
*
45777217 AATACCCTCGACCTGT
65 AATACCCTAGACCTGT
** * * * *
45777233 AAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACC
1 AAAATTATCAAAATACCCT-GATTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACC
45777296 GTTTTACCCC
Statistics
Matches: 115, Mismatches: 26, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
80 23 0.20
81 91 0.79
82 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (80 bp):
AAAATTATCAAAATACCCTGATTTGTAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAA
ATACCCTAGACCTGT
Found at i:45777279 original size:27 final size:27
Alignment explanation
Indices: 45777072--45777295 Score: 204
Period size: 27 Copynumber: 8.3 Consensus size: 27
45777062 TTTGGTTTAC
*
45777072 AAAATTACCAAAATACCCT-GCTTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * * *
45777098 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
*
45777125 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
* *
45777152 AAAATTATCAAAATACCCT-TAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
*
45777179 AAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACCAAAATACCCTC-GATTTGT
* ** **
45777206 GAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTCGATTTGT
*** *
45777233 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* *
45777260 AAAATTACCAAAGTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
*
45777287 AGAATTACC
1 AAAATTACC
45777296 GTTTTACCCC
Statistics
Matches: 165, Mismatches: 27, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
26 18 0.11
27 145 0.88
28 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTGT
Found at i:45777565 original size:27 final size:27
Alignment explanation
Indices: 45777273--45777564 Score: 381
Period size: 27 Copynumber: 10.8 Consensus size: 27
45777263 ATTACCAAAG
*
45777273 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
45777300 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
45777327 TACGCC-CGATTTACATAATTATCGTTT
1 TAC-CCTCGATTTACAGAATTACCGTTT
45777354 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
45777381 CACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
45777408 TACCCTCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
45777435 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
45777462 CACGCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
45777489 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
45777516 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
45777543 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
45777565 TAAAATACCC
Statistics
Matches: 233, Mismatches: 29, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 3 0.01
27 227 0.97
28 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:45778849 original size:25 final size:26
Alignment explanation
Indices: 45778806--45778855 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
45778796 TTATAATATG
* * *
45778806 AAAATGACCGTTTTGCCCCT-GGGTA
1 AAAATGACCATTATACCCCTAGGGTA
45778831 AAAATGACCATTATACCCCTAGGGT
1 AAAATGACCATTATACCCCTAGGGT
45778856 TTATGTATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (26 bp):
AAAATGACCATTATACCCCTAGGGTA
Found at i:45778904 original size:9 final size:9
Alignment explanation
Indices: 45778892--45778948 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
45778882 TTTGATAAAC
45778892 ATGATATGT
1 ATGATATGT
*
45778901 ATGATATGCAC
1 ATGATATG--T
*
45778912 ATGACATGT
1 ATGATATGT
*
45778921 ATGATATGCAC
1 ATGATATG--T
45778932 ATGATATGT
1 ATGATATGT
45778941 ATGATATG
1 ATGATATG
45778949 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:45778915 original size:20 final size:20
Alignment explanation
Indices: 45778890--45778960 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
45778880 ATTTTGATAA
45778890 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
45778910 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
45778930 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
45778950 ACATGAGATGT
1 ACATGATATGT
45778961 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:45778937 original size:11 final size:11
Alignment explanation
Indices: 45778901--45778955 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
45778891 CATGATATGT
45778901 ATGATATGCAC
1 ATGATATGCAC
* *
45778912 ATGACATG--T
1 ATGATATGCAC
45778921 ATGATATGCAC
1 ATGATATGCAC
*
45778932 ATGATATG--T
1 ATGATATGCAC
45778941 ATGATATGCAC
1 ATGATATGCAC
45778952 ATGA
1 ATGA
45778956 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:45779037 original size:23 final size:23
Alignment explanation
Indices: 45779007--45779173 Score: 271
Period size: 23 Copynumber: 7.1 Consensus size: 23
45778997 AGGAAGTGCA
45779007 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
45779030 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
45779054 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
45779078 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
45779101 AAAGGGCTTATGCCCCAGTTATA
1 AAAGGGCTTATGCCCCAGTTATT
45779124 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
45779147 GAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
45779171 AAA
1 AAA
45779174 AGAGGCTAGG
Statistics
Matches: 137, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
23 69 0.50
24 68 0.50
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:45779062 original size:24 final size:23
Alignment explanation
Indices: 45779006--45779195 Score: 274
Period size: 24 Copynumber: 8.0 Consensus size: 23
45778996 GAGGAAGTGC
45779006 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
45779029 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
45779052 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
45779076 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
45779100 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
45779123 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
* *
45779147 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
45779171 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
45779195 A
1 A
45779196 TGATAAAGCA
Statistics
Matches: 154, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 65 0.42
24 79 0.51
25 10 0.06
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:45779074 original size:47 final size:47
Alignment explanation
Indices: 45779005--45779194 Score: 276
Period size: 47 Copynumber: 4.0 Consensus size: 47
45778995 GGAGGAAGTG
*
45779005 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
45779052 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTAT
*
45779100 -TAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
** * *
45779146 TGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
45779195 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
46 23 0.17
47 66 0.50
48 33 0.25
49 11 0.08
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTAT
Found at i:45779421 original size:31 final size:31
Alignment explanation
Indices: 45779386--45779480 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
45779376 CGTTTACAGT
45779386 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
45779417 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
45779448 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
45779479 AA
1 AA
45779481 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:45780867 original size:205 final size:205
Alignment explanation
Indices: 45780192--45781114 Score: 1488
Period size: 205 Copynumber: 4.5 Consensus size: 205
45780182 GGGTGTTACA
* * *
45780192 AAATCATCTTAGATTTGCTTCATCGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTTGATTTGT
1 AAATCATCTTAGATTTGCTTCAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGC
* * * * *
45780257 TCCTTGTAAGCACAAGGATACCAAACCATCTTGGATCTGCTTCAGTCTAATCATCTGAAGGTTAG
66 TCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGG
* * *
45780322 ATCTGCTATGTGTCTGCCCTCCGTCGAATATGGAGACGCCAAACTTCGATTTGTTCTCTGACAAT
131 ATCTGCTATGTGTCTGCCCTCCGTCGAA-GTGGAGATGCCAGACTTCGATTTGTTCTCTGACAAT
45780387 ACAGAGATGCC
195 ACAGAGATGCC
* * * * *
45780398 AAATCATCTTAGACTTACTTCAGCGTAAGCACGTGAAAACCAAATCAGCTATGTCTTCGATTTGT
1 AAATCATCTTAGATTTGCTTCAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGC
* *
45780463 TCCTTGTAATCACAAGGATACCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGG
66 TCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGG
* * * *
45780528 ATCTGCTATGTGTCT-ACCTCCATCGAAGCGGACATGCCAGACTTCGATTTGTTCTCTGACAATA
131 ATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGATGCCAGACTTCGATTTGTTCTCTGACAATA
45780592 CAGAGATGCC
196 CAGAGATGCC
* *
45780602 AAATCATCTTAGATTTGCTTCAACGCAAGCACGTGAAAGCGAAATCAGCTATGTCTTCGATTTGC
1 AAATCATCTTAGATTTGCTTCAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGC
*
45780667 TCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGCTGG
66 TCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGG
* *
45780732 ATCTGCTATGTGTCTGCCCTCCGTTGAAGTGTAGATGCCAGACTTCGATTTGTTCTCTGACAATA
131 ATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGATGCCAGACTTCGATTTGTTCTCTGACAATA
45780797 CAGAGATGCC
196 CAGAGATGCC
* *
45780807 AAATCATCTTAGATTTGCTTCAACGCAAGCGCGTGAAAGCCAAATCAGCTATGTCTTCGATTTGC
1 AAATCATCTTAGATTTGCTTCAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGC
*
45780872 TCCTTGTAAGCACAAGGATGCCAAACCATCTTGCATCTACTTCAGTATAAACATCTGAAGGTTGG
66 TCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGG
* * * *
45780937 ATCTGCTATGCGTCTGCCCTCCGTCGAAGTGGAGATGCCGGACTTTGATTTGTTTTCTGACAATA
131 ATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGATGCCAGACTTCGATTTGTTCTCTGACAATA
45781002 CAGAGATGCC
196 CAGAGATGCC
* * * *
45781012 AAATCATTTTAGATTTGCTTTAACGTAAGCACATGAAAGCCAAATCAGCTATGTCTTCAATTTGC
1 AAATCATCTTAGATTTGCTTCAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGC
45781077 TCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT
66 TCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCT
45781115 TGCTTCAGCC
Statistics
Matches: 666, Mismatches: 50, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
204 177 0.27
205 354 0.53
206 135 0.20
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (205 bp):
AAATCATCTTAGATTTGCTTCAACGTAAGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGC
TCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTGG
ATCTGCTATGTGTCTGCCCTCCGTCGAAGTGGAGATGCCAGACTTCGATTTGTTCTCTGACAATA
CAGAGATGCC
Found at i:45783472 original size:27 final size:28
Alignment explanation
Indices: 45783442--45783511 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
45783432 ATAGTGAGTC
45783442 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
45783469 CGCACTCTTACTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
45783497 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45783512 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 20 0.54
28 17 0.46
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:45796096 original size:18 final size:19
Alignment explanation
Indices: 45796048--45796106 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 19
45796038 ACAATATATA
* *
45796048 ATATATAATAACAAAAATT
1 ATATATAAGAATAAAAATT
* *
45796067 -TATAAAAGAATAATAATT
1 ATATATAAGAATAAAAATT
*
45796085 ATATATAA-AATAAAAAAT
1 ATATATAAGAATAAAAATT
45796103 ATAT
1 ATAT
45796107 TGGTTTAGAA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
18 26 0.81
19 6 0.19
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
ATATATAAGAATAAAAATT
Found at i:45796360 original size:3 final size:3
Alignment explanation
Indices: 45796352--45796645 Score: 68
Period size: 3 Copynumber: 96.7 Consensus size: 3
45796342 GTTAAAACCT
* *
45796352 ATA ATA ATA ATA A-A TATA GATA A-A A-A ATA TATA ATA GT- ATA AAA
1 ATA ATA ATA ATA ATA -ATA -ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* *
45796396 ATA ATA AT- ATA A-A ATA ATT ATA AT- ATA AT- ATGA A-A GTA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA -ATA
* *
45796438 TGTA A-A ATA ATA TATA ATA TATA A-A ATA ATTA ATAA ATA TATT ATA
1 -ATA ATA ATA ATA -ATA ATA -ATA ATA ATA A-TA AT-A ATA -ATA ATA
* * *
45796484 CA-A GTA AAA ATA ATA ATA ATA TATAA ATA ATA AT- GTA A-A ATA ATA
1 -ATA ATA ATA ATA ATA ATA ATA -AT-A ATA ATA ATA ATA ATA ATA ATA
* * *
45796529 ATA TTTC GTGA A-A AGTA ATA TATA ATAA ATA ATA ATA AT- ATA GATA
1 ATA -ATA AT-A ATA A-TA ATA -ATA AT-A ATA ATA ATA ATA ATA -ATA
* * * ** *
45796575 ATA TATA ATAA ATA ATG AT- ATA ATGT ATA AT- ATA AAA ATA AGG TTA
1 ATA -ATA AT-A ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
* *
45796621 AAA ATA A-A ATA AAA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
45796646 TTATATATAT
Statistics
Matches: 213, Mismatches: 39, Indels: 78
0.65 0.12 0.24
Matches are distributed among these distances:
2 32 0.15
3 128 0.60
4 52 0.24
5 1 0.00
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:45796399 original size:35 final size:35
Alignment explanation
Indices: 45796355--45796463 Score: 104
Period size: 35 Copynumber: 3.2 Consensus size: 35
45796345 AAAACCTATA
*
45796355 ATAATAATAAATATAGATAAAA-AATATATAATAGT
1 ATAAAAATAAATATAGATAAAATAATATATAATA-T
*
45796390 ATAAAAAT-AATA-ATATAAAATAAT-TATAATAT
1 ATAAAAATAAATATAGATAAAATAATATATAATAT
* *
45796422 AATATGAAAGTATATAT-G-TAAAATAATATATAATAT
1 -ATA--AAAATAAATATAGATAAAATAATATATAATAT
45796458 ATAAAA
1 ATAAAA
45796464 TAATTAATAA
Statistics
Matches: 62, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
32 1 0.02
33 20 0.32
34 7 0.11
35 23 0.37
36 11 0.18
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (35 bp):
ATAAAAATAAATATAGATAAAATAATATATAATAT
Found at i:45796401 original size:14 final size:13
Alignment explanation
Indices: 45796382--45796532 Score: 65
Period size: 13 Copynumber: 11.8 Consensus size: 13
45796372 TAAAAAATAT
*
45796382 ATAATAGTATAAAA
1 ATAATAATAT-AAA
45796396 ATAATAATATAAA
1 ATAATAATATAAA
45796409 ATAAT--TAT--A
1 ATAATAATATAAA
45796418 AT-ATAATATGAAA
1 ATAATAATAT-AAA
* *
45796431 GT-ATATATGTAAA
1 ATAATA-ATATAAA
*
45796444 ATAAT-ATATAAT
1 ATAATAATATAAA
*
45796456 AT-ATAAAATAATTA
1 ATAATAATATAA--A
45796470 ATAAATATATTATACAA
1 AT-AATA-A-TATA-AA
*
45796487 GTAA-AA-AT--A
1 ATAATAATATAAA
45796496 ATAATAATATATAA
1 ATAATAATATA-AA
*
45796510 ATAATAATGTAAA
1 ATAATAATATAAA
45796523 ATAATAATAT
1 ATAATAATAT
45796533 TTCGTGAAAA
Statistics
Matches: 104, Mismatches: 13, Indels: 41
0.66 0.08 0.26
Matches are distributed among these distances:
8 2 0.02
9 7 0.07
10 5 0.05
11 7 0.07
12 14 0.13
13 28 0.27
14 28 0.27
15 1 0.01
16 5 0.05
17 3 0.03
18 3 0.03
19 1 0.01
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (13 bp):
ATAATAATATAAA
Found at i:45796462 original size:19 final size:19
Alignment explanation
Indices: 45796351--45796609 Score: 95
Period size: 19 Copynumber: 13.5 Consensus size: 19
45796341 AGTTAAAACC
*
45796351 TATAATAATAATAAAT-ATA
1 TATAA-AATAATATATAATA
*
45796370 GATAAAA-AATATATAATA
1 TATAAAATAATATATAATA
45796388 GTAT-AAA-AATA-AT-A-A
1 -TATAAAATAATATATAATA
45796403 TATAAAATAAT-TAT-A-A
1 TATAAAATAATATATAATA
*
45796419 TATAATATGAA-AGTAT-ATA
1 TATAAAAT-AATA-TATAATA
*
45796438 TGTAAAATAATATATAATA
1 TATAAAATAATATATAATA
45796457 TATAAAATAAT-TAATAAATA
1 TATAAAATAATAT-AT-AATA
*
45796477 TATTATACAAGTAA-AAATAATA
1 TA-TA-A-AA-TAATATATAATA
* *
45796499 -ATAATAT-ATAAATAATAA
1 TATAAAATAATATATAAT-A
* *
45796517 TGTAAAATAATA-AT-ATT
1 TATAAAATAATATATAATA
*
45796534 TCGTGAAAAGTAATATATAATA
1 T-AT-AAAA-TAATATATAATA
*
45796556 AATAATAATAATATAGATAATA
1 TATAA-AATAATAT--ATAATA
*
45796578 TATAATAAATAATGATATAATG
1 TAT-A-AAATAAT-ATATAATA
*
45796600 TATAATATAA
1 TATAAAATAA
45796610 AAATAAGGTT
Statistics
Matches: 189, Mismatches: 18, Indels: 65
0.69 0.07 0.24
Matches are distributed among these distances:
14 3 0.02
15 4 0.02
16 16 0.08
17 19 0.10
18 28 0.15
19 41 0.22
20 29 0.15
21 9 0.05
22 23 0.12
23 11 0.06
24 6 0.03
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (19 bp):
TATAAAATAATATATAATA
Found at i:45796467 original size:48 final size:49
Alignment explanation
Indices: 45796391--45796577 Score: 122
Period size: 48 Copynumber: 3.8 Consensus size: 49
45796381 TATAATAGTA
* * *
45796391 TAAAAATAATAATATAA-A-ATAATTATAATATAAT-ATGAAAGTATATATG
1 TAAAAATAAT-ATATAATATATAA-AATAATATAATAAT-AAAGTATACAAG
* *
45796440 T-AAAATAATATATAATATATAAAATAAT-TAATAAATATATTATACAAG
1 TAAAAATAATATATAATATATAAAATAATATAAT-AATAAAGTATACAAG
* * *
45796488 TAAAAATAATA-ATAATATATAAATAATAATGTAA-AATAATAATATTTC--G
1 TAAAAATAATATATAATATAT-AA-AATAATATAATAATAA-AGTA-TACAAG
* *
45796537 TGAAAAGTAATATATAATAAATAATAATAATATAGATAATA
1 T-AAAAATAATATATAATATATAA-AATAATATA-ATAATA
45796578 TATAATAAAT
Statistics
Matches: 113, Mismatches: 11, Indels: 25
0.76 0.07 0.17
Matches are distributed among these distances:
47 10 0.09
48 32 0.28
49 24 0.21
50 29 0.26
51 14 0.12
52 4 0.04
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (49 bp):
TAAAAATAATATATAATATATAAAATAATATAATAATAAAGTATACAAG
Found at i:45796582 original size:22 final size:21
Alignment explanation
Indices: 45796544--45796606 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
45796534 TCGTGAAAAG
*
45796544 TAAT-ATATAATAAATAATAA
1 TAATGATATAATATATAATAA
45796564 TAAT-ATAGATAATATATAATAAA
1 TAATGAT--ATAATATATAAT-AA
*
45796587 TAATGATATAATGTATAATA
1 TAATGATATAATATATAATA
45796607 TAAAAATAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
20 6 0.16
21 1 0.03
22 22 0.59
23 6 0.16
24 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.37
Consensus pattern (21 bp):
TAATGATATAATATATAATAA
Found at i:45796603 original size:7 final size:7
Alignment explanation
Indices: 45796355--45796608 Score: 74
Period size: 7 Copynumber: 36.1 Consensus size: 7
45796345 AAAACCTATA
45796355 ATAATA-
1 ATAATAT
45796361 ATAA-AT
1 ATAATAT
*
45796367 ATAGATAA
1 ATA-ATAT
*
45796375 AAAATAT
1 ATAATAT
45796382 ATAATAGT
1 ATAATA-T
*
45796390 ATAA-AA
1 ATAATAT
45796396 ATAATAAT
1 ATAAT-AT
45796404 ATAA-A-
1 ATAATAT
45796409 ATAAT-T
1 ATAATAT
45796415 AT-A-AT
1 ATAATAT
45796420 ATAATAT
1 ATAATAT
45796427 GA-AAGTAT
1 -ATAA-TAT
* *
45796435 ATATGTAAA
1 ATA-AT-AT
45796444 ATAATAT
1 ATAATAT
45796451 ATAATAT
1 ATAATAT
45796458 ATAA-A-
1 ATAATAT
45796463 ATAAT-T
1 ATAATAT
45796469 AATAA-AT
1 -ATAATAT
*
45796476 ATATTAT
1 ATAATAT
*
45796483 ACAAGTA-
1 ATAA-TAT
*
45796490 AAAATAAT
1 ATAAT-AT
45796498 AATAATAT
1 -ATAATAT
45796506 ATAA-AT
1 ATAATAT
*
45796512 AATAATGT
1 -ATAATAT
*
45796520 AAAATA-
1 ATAATAT
45796526 ATAATAT
1 ATAATAT
* ** *
45796533 TTCGTGAAA
1 ATAAT--AT
45796542 AGTAATAT
1 A-TAATAT
*
45796550 ATAATAA
1 ATAATAT
45796557 ATAATA-
1 ATAATAT
45796563 ATAATAT
1 ATAATAT
45796570 AGATAATAT
1 --ATAATAT
*
45796579 ATAATAA
1 ATAATAT
45796586 ATAATGAT
1 ATAAT-AT
*
45796594 ATAATGT
1 ATAATAT
45796601 ATAATAT
1 ATAATAT
45796608 A
1 A
45796609 AAAATAAGGT
Statistics
Matches: 181, Mismatches: 32, Indels: 69
0.64 0.11 0.24
Matches are distributed among these distances:
5 13 0.07
6 33 0.18
7 84 0.46
8 33 0.18
9 16 0.09
10 2 0.01
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (7 bp):
ATAATAT
Found at i:45796604 original size:15 final size:14
Alignment explanation
Indices: 45796355--45796608 Score: 99
Period size: 14 Copynumber: 18.1 Consensus size: 14
45796345 AAAACCTATA
45796355 ATAAT-AATAA-AT
1 ATAATAAATAATAT
*
45796367 ATAGATAAAAAATAT
1 ATA-ATAAATAATAT
* *
45796382 ATAATAGTATAA-AA
1 ATAATA-AATAATAT
45796396 ATAATAATATAA-A-
1 ATAATAA-ATAATAT
*
45796409 ATAAT-TATAATAT
1 ATAATAAATAATAT
45796422 A-ATATGAAAGT-ATAT
1 ATA-AT-AAA-TAATAT
*
45796437 AT-GTAAAATAATAT
1 ATAAT-AAATAATAT
*
45796451 ATAATATATAA-A-
1 ATAATAAATAATAT
*
45796463 ATAATTAATAAATAT
1 ATAATAAAT-AATAT
* *
45796478 ATTATACAAGTAA-AA
1 ATAATA-AA-TAATAT
45796493 ATAAT-AATAATAT
1 ATAATAAATAATAT
*
45796506 ATAA-ATAATAATGT
1 ATAATA-AATAATAT
*
45796520 AAAAT-AATAATAT
1 ATAATAAATAATAT
* **
45796533 TTCGTGAAAAGTAATAT
1 ATAAT--AAA-TAATAT
45796550 ATAATAAATAATA-
1 ATAATAAATAATAT
45796563 ATAATATAGATAATAT
1 ATAATA-A-ATAATAT
45796579 ATAATAAATAATGAT
1 ATAATAAATAAT-AT
**
45796594 ATAATGTATAATAT
1 ATAATAAATAATAT
45796608 A
1 A
45796609 AAAATAAGGT
Statistics
Matches: 181, Mismatches: 30, Indels: 60
0.67 0.11 0.22
Matches are distributed among these distances:
11 4 0.02
12 15 0.08
13 35 0.19
14 59 0.33
15 46 0.25
16 13 0.07
17 9 0.05
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (14 bp):
ATAATAAATAATAT
Found at i:45796608 original size:29 final size:28
Alignment explanation
Indices: 45796352--45796598 Score: 75
Period size: 29 Copynumber: 8.9 Consensus size: 28
45796342 GTTAAAACCT
* *
45796352 ATAATAATAATA-AAT-ATAGATAAAAA
1 ATAATAATAATATAATAATATATAATAA
* *
45796378 ATATATAATAGTATAAAAATA-ATAAT--
1 ATA-ATAATAATATAATAATATATAATAA
45796404 ATAA-AATAAT-T-ATAATATA-ATATGAA
1 ATAATAATAATATAATAATATATA-AT-AA
* * *
45796430 AGT-AT-ATATGTAAAATAATATATAATAT
1 A-TAATAATA-ATATAATAATATATAATAA
*
45796458 ATAA-AATAAT-TAATAAATATATTATACA
1 ATAATAATAATATAAT-AATATATAATA-A
*
45796486 AGTAAAAAT-A-ATAATAATATATAA-ATA
1 A-TAATAATAATATAATAATATATAATA-A
* * * **
45796513 ATAAT-GTAAAATAATAATATTTCGTGAAA
1 ATAATAATAATATAATAATATATAAT--AA
45796542 AGTAATATATAATA-AATAATA-ATAATATA
1 A-TAATA-ATAATATAATAATATATAATA-A
45796571 GATAATATATAATA-AATAATGATATAAT
1 -ATAATA-ATAATATAATAAT-ATATAAT
45796599 GTATAATATA
Statistics
Matches: 164, Mismatches: 24, Indels: 61
0.66 0.10 0.24
Matches are distributed among these distances:
22 6 0.04
23 4 0.02
24 5 0.03
25 2 0.01
26 18 0.11
27 36 0.22
28 22 0.13
29 42 0.26
30 13 0.08
31 12 0.07
32 4 0.02
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (28 bp):
ATAATAATAATATAATAATATATAATAA
Found at i:45797496 original size:15 final size:15
Alignment explanation
Indices: 45797476--45797505 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
45797466 AAGAAATCTT
45797476 TCGATTTCTTTCCAA
1 TCGATTTCTTTCCAA
45797491 TCGATTTCTTTCCAA
1 TCGATTTCTTTCCAA
45797506 ACTCTGTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.07, T:0.47
Consensus pattern (15 bp):
TCGATTTCTTTCCAA
Found at i:45801059 original size:51 final size:50
Alignment explanation
Indices: 45800993--45801217 Score: 158
Period size: 51 Copynumber: 4.4 Consensus size: 50
45800983 TTTTTTTGAG
*
45800993 GGTGGA-GGAGGGAGATGGGTAGCACCAGTAT-AAAAAATTAGAATTTTTTT
1 GGTGGAGGGAGAGAGATGGGT-GCACCAGTATAAAAAAATTA-AATTTTTTT
* * * **
45801043 GGTGGAGAGAGAGAGATGGATGGCACTAGTATAAAAAAAAATTATTTTTTTTT
1 GGTGGAGGGAGAGAGATGGGT-GCACCAGTAT--AAAAAAATTAAATTTTTTT
* * *
45801096 GGTGAAGGGAGAGAGATAGGCGT-CTCCAGTATAAAAAAATT-ACTTTTTTT
1 GGTGGAGGGAGAGAGAT-GG-GTGCACCAGTATAAAAAAATTAAATTTTTTT
* * * *
45801146 GGGTGGAGGGAGAGAGTTAGGCG-GCATCAGTAT--AAAAAGTAATATTATTTT
1 -GGTGGAGGGAGAGAGAT-GG-GTGCACCAGTATAAAAAAATTAA-ATTTTTTT
** *
45801197 ATTGGAAGGAGAGAGATGGGT
1 GGTGGAGGGAGAGAGATGGGT
45801218 AATACAGTAT
Statistics
Matches: 139, Mismatches: 25, Indels: 23
0.74 0.13 0.12
Matches are distributed among these distances:
48 1 0.01
49 8 0.06
50 27 0.19
51 62 0.45
53 29 0.21
54 11 0.08
55 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.31, T:0.28
Consensus pattern (50 bp):
GGTGGAGGGAGAGAGATGGGTGCACCAGTATAAAAAAATTAAATTTTTTT
Found at i:45803829 original size:40 final size:40
Alignment explanation
Indices: 45803771--45803934 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
45803761 TGAATGATAC
* * * * *
45803771 CCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
* *
45803811 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTAAAT
* * **
45803851 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
* * *
45803891 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
45803931 CCGG
1 CCGG
45803935 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTAAAT
Found at i:45806952 original size:43 final size:43
Alignment explanation
Indices: 45806904--45806987 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
45806894 ATCACATGTA
*
45806904 TCGCATCCATTATCAACTCAGACCACTCAACCAGCTCGGATGC
1 TCGCATCCATAATCAACTCAGACCACTCAACCAGCTCGGATGC
* * * *
45806947 TCGCATCCATAATGAACTCGGACCACTCAACGAGCTTGGAT
1 TCGCATCCATAATCAACTCAGACCACTCAACCAGCTCGGAT
45806988 TCCACATATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (43 bp):
TCGCATCCATAATCAACTCAGACCACTCAACCAGCTCGGATGC
Found at i:45807599 original size:8 final size:8
Alignment explanation
Indices: 45807586--45807611 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
45807576 TATTACTACT
45807586 CACTTTTA
1 CACTTTTA
45807594 CACTTTTA
1 CACTTTTA
45807602 CACTTTTA
1 CACTTTTA
45807610 CA
1 CA
45807612 AACAAGTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.46
Consensus pattern (8 bp):
CACTTTTA
Found at i:45811800 original size:39 final size:39
Alignment explanation
Indices: 45811603--45811788 Score: 327
Period size: 39 Copynumber: 4.8 Consensus size: 39
45811593 AATTTTATTA
*
45811603 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
45811642 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
45811681 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
45811720 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
45811759 CCAGCACAAAGCCTGCGGGTCTTTAGCCCG
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCG
45811789 AATCTATTTC
Statistics
Matches: 138, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 138 1.00
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.22
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:45817608 original size:39 final size:39
Alignment explanation
Indices: 45817554--45817827 Score: 435
Period size: 39 Copynumber: 7.1 Consensus size: 39
45817544 AATTTTATTA
*
45817554 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
45817593 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
45817632 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
45817671 CCAGCGCAAAGCCTGCGGGACTTTAGCTC-GATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
45817709 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
45817748 CCAGCACGAAGCCTGCGGGTCTTTGGCCC-GATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
45817786 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
45817825 CCA
1 CCA
45817828 TACACATTTC
Statistics
Matches: 215, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
38 69 0.32
39 146 0.68
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:45817739 original size:77 final size:77
Alignment explanation
Indices: 45817554--45817827 Score: 440
Period size: 77 Copynumber: 3.5 Consensus size: 77
45817544 AATTTTATTA
*
45817554 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAG
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAG
45817619 CCCGGATACATTT
66 CCC-GATACATTT
* * * * *
45817632 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTTCCAGCGCAAAGCCTGCGGGACTTTAG
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAG
*
45817697 CTCGATACATTT
66 CCCGATACATTT
* *
45817709 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGG
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAG
*
45817774 CCCGATATATTT
66 CCCGATACATTT
*
45817786 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCA
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCA
45817828 TACACATTTC
Statistics
Matches: 179, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
77 118 0.66
78 61 0.34
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (77 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAG
CCCGATACATTT
Found at i:45817759 original size:116 final size:116
Alignment explanation
Indices: 45817549--45817827 Score: 497
Period size: 116 Copynumber: 2.4 Consensus size: 116
45817539 CCCGAAATTT
*
45817549 TATTACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
45817614 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATA
66 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCC-GATA
* *
45817666 TATTTCCAGCGCAAAGCCTGCGGGACTTTAGCTC-GATACATTTCCAGCACAAAGCCTGCGGGTC
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
45817730 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGATA
66 TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGATA
* *
45817781 TATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCA
1 TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
45817828 TACACATTTC
Statistics
Matches: 154, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
115 35 0.23
116 88 0.57
117 31 0.20
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (116 bp):
TATTTCCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTC
TTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTGGCCCGATA
Found at i:45832985 original size:10 final size:10
Alignment explanation
Indices: 45832970--45833012 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
45832960 CAATTCACTA
45832970 ACCAAATCAT
1 ACCAAATCAT
*
45832980 ACCAAATCTAA
1 ACCAAATC-AT
45832991 ACCAAAATCAT
1 ACC-AAATCAT
*
45833002 ACCAAAGCAT
1 ACCAAATCAT
45833012 A
1 A
45833013 TGTTTCAGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 15 0.54
11 8 0.29
12 5 0.18
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.16
Consensus pattern (10 bp):
ACCAAATCAT
Found at i:45833821 original size:30 final size:31
Alignment explanation
Indices: 45833762--45833827 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
45833752 TCCCAGACGT
*
45833762 GGTCTTACATGTAATCAAATATCGATGCCAA
1 GGTCTTACATGAAATCAAATATCGATGCCAA
45833793 GGTCTTACATGAAATCAAATAT-GATGCCAA
1 GGTCTTACATGAAATCAAATATCGATGCCAA
*
45833823 CGTCT
1 GGTCT
45833828 CAGACGTGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 12 0.36
31 21 0.64
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.29
Consensus pattern (31 bp):
GGTCTTACATGAAATCAAATATCGATGCCAA
Found at i:45833867 original size:44 final size:44
Alignment explanation
Indices: 45833815--45833933 Score: 193
Period size: 44 Copynumber: 2.7 Consensus size: 44
45833805 AATCAAATAT
*
45833815 GATGCCAACGTCTCAGACGTGGTCTTACACGTAAATCATAAGTC
1 GATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGTC
* * *
45833859 GATGCCAACATCCCAAACGTGGTCTTACATGTAAATCATAAGTC
1 GATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGTC
*
45833903 GATTCCAACGTCCCAGACGTGGTCTTACACG
1 GATGCCAACGTCCCAGACGTGGTCTTACACG
45833934 ATAACACATA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (44 bp):
GATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGTC
Found at i:45837324 original size:42 final size:42
Alignment explanation
Indices: 45837276--45837385 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 42
45837266 TTTGAGATTA
*
45837276 CATGTAAGACCATATCTGGGATATGACATCGATATGAGA-CTT
1 CATGTAAGACCATATCTGGGATATGACATCGATATGAGATC-C
* * * * *
45837318 CGTGTAAGACCATAGCTAGGCTATTGGCATCGATATGAGATCC
1 CATGTAAGACCATATCTGGGATA-TGACATCGATATGAGATCC
45837361 CATGTAAGACCATATCTGGGATATG
1 CATGTAAGACCATATCTGGGATATG
45837386 GCATTGGTAT
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 21 0.38
43 34 0.61
44 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (42 bp):
CATGTAAGACCATATCTGGGATATGACATCGATATGAGATCC
Found at i:45842090 original size:34 final size:34
Alignment explanation
Indices: 45842019--45842090 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
45842009 GCATTTCTGT
* *
45842019 TACTGTTACTGTAATAGGCTAAGGCCCACACTGA
1 TACTATTACTGTAATAGGCTAAGGCCCACACTAA
* *
45842053 TACTATTACTGTAATGGGCTATGGCCCTA-ACTAA
1 TACTATTACTGTAATAGGCTAAGGCCC-ACACTAA
45842087 TACT
1 TACT
45842091 GGATTGTCAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 32 0.97
35 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (34 bp):
TACTATTACTGTAATAGGCTAAGGCCCACACTAA
Found at i:45847061 original size:100 final size:100
Alignment explanation
Indices: 45846882--45847143 Score: 321
Period size: 100 Copynumber: 2.6 Consensus size: 100
45846872 GCTAAATGAC
* * * * ** * *
45846882 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTTGATCTTGAATATTAGGCC
1 CTTGTATATTCAGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGAATATTCGACC
* * *
45846947 ATGAAGGTATGCACAAATGTGATATTATATTTGAAT
66 ATGAAGATAAGCACAAATGTGATATTAAATTTG-AT
* * *
45846983 -TTGTATATTCAGCCATATAAGTAAATACATATGTAATGTTAAATTTGATCTTGCATATTCGACC
1 CTTGTATATTCAGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGAATATTCGACC
*
45847047 AT-ATAGATAAGCACATATGTGATATTAAATTTGAT
66 ATGA-AGATAAGCACAAATGTGATATTAAATTTGAT
* * * *
45847082 CTTGCATATTCAGCCATATAAGTAAGCACATATGTGATATTAAATTTGATCTTGTATATTCG
1 CTTGTATATTCAGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGAATATTCG
45847144 GCCAAATAAG
Statistics
Matches: 138, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
99 3 0.02
100 135 0.98
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (100 bp):
CTTGTATATTCAGCCATATAAGTAAGTACATATGTGATGTTAAATTTGATCTTGAATATTCGACC
ATGAAGATAAGCACAAATGTGATATTAAATTTGAT
Found at i:45847153 original size:50 final size:50
Alignment explanation
Indices: 45846882--45847154 Score: 291
Period size: 50 Copynumber: 5.5 Consensus size: 50
45846872 GCTAAATGAC
* * * * * **
45846882 CTTGTATATTCGGCCACATAGGTATGTACATATGTGATGTTGTATTTGAT
1 CTTGTATATTCGGCCATATAAGTAAGCACATATGTGATATTAAATTTGAT
* * * * * *
45846932 CTTGAATATTAGGCCATGA-AGGTATGCACAAATGTGATATTATATTTGAAT
1 CTTGTATATTCGGCCAT-ATAAGTAAGCACATATGTGATATTAAATTTG-AT
* ** * *
45846983 -TTGTATATTCAGCCATATAAGTAAATACATATGTAATGTTAAATTTGAT
1 CTTGTATATTCGGCCATATAAGTAAGCACATATGTGATATTAAATTTGAT
* *
45847032 CTTGCATATTCGACCATAT-AGATAAGCACATATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAAG-TAAGCACATATGTGATATTAAATTTGAT
* *
45847082 CTTGCATATTCAGCCATATAAGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAAGTAAGCACATATGTGATATTAAATTTGAT
*
45847132 CTTGTATATTCGGCCAAATAAGT
1 CTTGTATATTCGGCCATATAAGT
45847155 GATGTTGGTA
Statistics
Matches: 187, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
49 5 0.03
50 177 0.95
51 5 0.03
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAAGTAAGCACATATGTGATATTAAATTTGAT
Found at i:45854597 original size:49 final size:49
Alignment explanation
Indices: 45854536--45854938 Score: 715
Period size: 49 Copynumber: 8.3 Consensus size: 49
45854526 GTATGAGGTA
45854536 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
45854585 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
45854634 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
45854683 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
45854732 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
45854781 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
45854830 TATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTG-AAG-GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
45854877 TATATATGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
45854924 TATAAATGTGATAAG
1 TATATATGTGATAAG
45854939 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 55 0.16
48 5 0.01
49 282 0.82
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:45858708 original size:50 final size:50
Alignment explanation
Indices: 45858599--45858811 Score: 232
Period size: 50 Copynumber: 4.3 Consensus size: 50
45858589 GCTAAATGAC
* * * * * ** *
45858599 CTTGTATATTCGACCACATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
** * * *
45858649 CTTAAATATTCGGCCATGA-AGGTATGCACAAATGTGATATTATATTTGAAT
1 CTTGTATATTCGGCCAT-ATAGGTAAGCACATATGTGATATTAAATTTG-AT
* *
45858700 -TTGTATATTCGGCCATATAAGTAAGGACATATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* * *
45858749 CTTGCATATTTGGCCATATTGGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
45858799 CTTGTATATTCGG
1 CTTGTATATTCGG
45858812 TAAAATGAGT
Statistics
Matches: 136, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
49 3 0.02
50 130 0.96
51 3 0.02
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
Found at i:45873498 original size:25 final size:28
Alignment explanation
Indices: 45873451--45873509 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
45873441 TTCTCTTAAA
*
45873451 TTTTAATTTTATTCAATTAATTAAT-TT
1 TTTTAATTTCATTCAATTAATTAATATT
*
45873478 TTTTAA-TTCATTGAATT-ATTAATAATT
1 TTTTAATTTCATTCAATTAATTAAT-ATT
45873505 TTTTA
1 TTTTA
45873510 TTAAATCTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 6 0.21
26 9 0.32
27 13 0.46
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (28 bp):
TTTTAATTTCATTCAATTAATTAATATT
Found at i:45880880 original size:6 final size:6
Alignment explanation
Indices: 45880869--45881102 Score: 193
Period size: 6 Copynumber: 38.8 Consensus size: 6
45880859 AACCAAAATA
*
45880869 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * * *
45880917 AGTAA-C AGAAT- TGAATC AAAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
*
45880965 AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC
* *
45881013 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGTAA-C AGAATC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AG-AATC AGAATC
* *
45881062 AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAAT
45881103 GTGAATGCAA
Statistics
Matches: 185, Mismatches: 20, Indels: 46
0.74 0.08 0.18
Matches are distributed among these distances:
5 20 0.11
6 148 0.80
7 13 0.07
8 4 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:45880882 original size:30 final size:30
Alignment explanation
Indices: 45880831--45881063 Score: 110
Period size: 30 Copynumber: 7.9 Consensus size: 30
45880821 TTAGCCCATT
* ** *
45880831 ACAAAATAAGAAACATTATCAGAAT-TGGA
1 ACAAAATAAGAATCAGAATCAGAATCAGGA
*
45880860 ACCAAAATAAGAATCAGAATCAGAATCAGTA
1 A-CAAAATAAGAATCAGAATCAGAATCAGGA
* * * *
45880891 ACAGAATCAGAATCAGAATCA-ATATTAGTA
1 ACAAAATAAGAATCAGAATCAGA-ATCAGGA
* * * * *
45880921 ACAGAAT-TGAATCAAAATCAGAATTAGGTG
1 ACAAAATAAGAATCAGAATCAGAATCAGG-A
*
45880951 AC------AGAATCAGAATCAGAATCAGTA
1 ACAAAATAAGAATCAGAATCAGAATCAGGA
* * * *
45880975 ACAGAATCAGAATCAGAATCA-ATATTAGTA
1 ACAAAATAAGAATCAGAATCAGA-ATCAGGA
* * * *
45881005 ACAGAATCAGAATCAGAATCAGAATTAGGTG
1 ACAAAATAAGAATCAGAATCAGAATCAGG-A
* *
45881036 ACAGAATCAGAATCAGTAA-CAGAATCAG
1 ACAAAATAAGAATCAG-AATCAGAATCAG
45881064 AATCAGAATC
Statistics
Matches: 168, Mismatches: 21, Indels: 28
0.77 0.10 0.13
Matches are distributed among these distances:
24 2 0.01
25 17 0.10
29 19 0.11
30 100 0.60
31 28 0.17
32 2 0.01
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (30 bp):
ACAAAATAAGAATCAGAATCAGAATCAGGA
Found at i:45881258 original size:27 final size:27
Alignment explanation
Indices: 45881220--45881285 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
45881210 AGCATGGCTG
*
45881220 CCAGAAT-AGATATCGTGACAGAGTCA
1 CCAGAATCAGATATCGTGACAGAGCCA
* *
45881246 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATATCGTGACAGAGCCA
45881273 CCAGAATCAGATA
1 CCAGAATCAGATA
45881286 ATATGGCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 2 0.06
26 4 0.12
27 26 0.76
28 2 0.06
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATATCGTGACAGAGCCA
Found at i:45881292 original size:27 final size:27
Alignment explanation
Indices: 45881238--45881293 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
45881228 GATATCGTGA
* * *
45881238 CAGAGTCACCAGATACAGATATTGTGG
1 CAGAGCCACCAGATACAGATAATATGG
45881265 CAGAGCCACCAGA-ATCAGATAATATGG
1 CAGAGCCACCAGATA-CAGATAATATGG
45881292 CA
1 CA
45881294 AACCCACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 1 0.04
27 24 0.96
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGAGCCACCAGATACAGATAATATGG
Found at i:45881300 original size:27 final size:27
Alignment explanation
Indices: 45881244--45881301 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
45881234 GTGACAGAGT
* * * *
45881244 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATATGGCAAACC
45881271 CACCAGA-ATCAGATAATATGGCAAACC
1 CACCAGATA-CAGATAATATGGCAAACC
45881298 CACC
1 CACC
45881302 TAACAGAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATATGGCAAACC
Found at i:45881506 original size:22 final size:22
Alignment explanation
Indices: 45881458--45881516 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
45881448 GTAAATACGT
*
45881458 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
45881480 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
45881502 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
45881517 TAATATCCGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:45881682 original size:27 final size:26
Alignment explanation
Indices: 45881603--45881685 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
45881593 TCGATCGGTC
* * *
45881603 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
45881629 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
45881656 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
45881683 AAC
1 AAC
45881686 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:45881914 original size:27 final size:27
Alignment explanation
Indices: 45881884--45882160 Score: 329
Period size: 27 Copynumber: 10.3 Consensus size: 27
45881874 GGGGCAAAAT
* * * *
45881884 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
45881911 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
45881938 GGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
45881965 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
45881992 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45882019 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
45882046 GAAAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
45882073 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
45882100 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45882127 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
45882154 AGTAATT
1 GGTAATT
45882161 TCACAATCAA
Statistics
Matches: 209, Mismatches: 41, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 209 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:45882028 original size:81 final size:81
Alignment explanation
Indices: 45881887--45882152 Score: 390
Period size: 81 Copynumber: 3.3 Consensus size: 81
45881877 GCAAAATGGT
* * * * * * * * * * *
45881887 AATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTATCCT
1 AATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCT
* *
45881952 ACAAGGGTATTTC-AA
66 ATAGGGGTATTTCGAA
45881967 TAATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
1 -AATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCC
45882032 TATAGGGGTATTTCGAA
65 TATAGGGGTATTTCGAA
45882049 AATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCT
1 AATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCT
*
45882114 ATAGGGGTATTTCGGA
66 ATAGGGGTATTTCGAA
45882130 AATTCTACCCTACAGGGGTATTT
1 AATTCTACCCTACAGGGGTATTT
45882153 CAGTAATTTC
Statistics
Matches: 170, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
81 168 0.99
82 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.36
Consensus pattern (81 bp):
AATTCTACCCTACAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCT
ATAGGGGTATTTCGAA
Found at i:45882205 original size:27 final size:27
Alignment explanation
Indices: 45882165--45882308 Score: 173
Period size: 27 Copynumber: 5.3 Consensus size: 27
45882155 GTAATTTCAC
* * * **
45882165 AATCAAGGGTAAAACAGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45882192 AACCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45882219 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
45882246 AA-CTGAGAGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
45882273 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
45882300 AATCGAGGG
1 AATCGAGGG
45882309 CATTTTAGTA
Statistics
Matches: 101, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 99 0.98
28 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.24
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:45882321 original size:54 final size:54
Alignment explanation
Indices: 45882165--45882308 Score: 202
Period size: 54 Copynumber: 2.7 Consensus size: 54
45882155 GTAATTTCAC
* * *
45882165 AATCAAGGGTAAAACAGTAATTTTAAAAACCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTA
* * *
45882219 AATCGAGGGTAAAACGATAATTCTGT-AAACT-GAGAGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATT-T-TAAAAATCGAGGGTAAAACGGTAATTCTGTA
45882273 AATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGG
1 AATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGG
45882309 CATTTTAGTA
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
52 1 0.01
53 5 0.06
54 66 0.86
55 4 0.05
56 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.24
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACGGTAATTCTGTA
Found at i:45884275 original size:17 final size:18
Alignment explanation
Indices: 45884233--45884281 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
45884223 AGTTGAAAAG
45884233 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
45884252 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
45884269 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
45884282 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:45885163 original size:40 final size:40
Alignment explanation
Indices: 45885097--45885263 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
45885087 AAATTGAATG
* * *
45885097 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
45885136 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
45885176 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
45885216 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
45885256 ATATCCGG
1 ATATCCGG
45885264 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:45892268 original size:17 final size:18
Alignment explanation
Indices: 45892226--45892274 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
45892216 AGTTGAAAAG
45892226 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
45892245 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
45892262 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
45892275 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:45893223 original size:40 final size:37
Alignment explanation
Indices: 45893136--45893244 Score: 128
Period size: 38 Copynumber: 2.8 Consensus size: 37
45893126 CTGGAAATTA
* * *
45893136 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGT
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTAGT
* *
45893174 TATCCGGGCTAAGGCCCGAAGGCATTCGTGCGAGTTATT
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCGAG-TAGT
45893213 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 -TATCCGGGCTAAGACCCGAAGGCA-TTGTGC
45893245 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
37 3 0.05
38 27 0.44
39 2 0.03
40 27 0.44
41 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (37 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTAGT
Found at i:45893258 original size:40 final size:40
Alignment explanation
Indices: 45893096--45893260 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
45893086 AAATTGAATG
* * **
45893096 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * *
45893135 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG-GT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
* *
45893174 -TATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
45893213 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
45893253 ATATCCGG
1 ATATCCGG
45893261 TTATATTCCG
Statistics
Matches: 103, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
37 3 0.03
38 28 0.27
39 16 0.16
40 54 0.52
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:45894664 original size:47 final size:47
Alignment explanation
Indices: 45894595--45894877 Score: 426
Period size: 47 Copynumber: 6.0 Consensus size: 47
45894585 CTCGGGGGNA
45894595 CTAATGGCCGATGTGATGAATGTGAAAGTGTTATATAT-TGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGC
45894642 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
45894689 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGC
45894740 CTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* * *
45894786 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* * * * * *
45894833 CGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
45894878 TCCCGAAGGG
Statistics
Matches: 222, Mismatches: 8, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
46 46 0.21
47 130 0.59
50 5 0.02
51 41 0.18
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
Found at i:45894808 original size:144 final size:145
Alignment explanation
Indices: 45894595--45894866 Score: 449
Period size: 144 Copynumber: 1.9 Consensus size: 145
45894585 CTCGGGGGNA
* *
45894595 CTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATTGATAAGGCCTAATGGCCGATGTGATG
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATTGATAAGGCCGAATGGCCAATGTGATG
* * *
45894660 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
66 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATA
45894725 TATATGTGATAAGGC
131 TATATGTGATAAGGC
45894740 CTAATGGCCGATGTGATGAATGTG-AAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTTATATAT-TGATAAGGCCGAATGGCCAATGTGAT
* * *
45894803 GAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
65 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATA
45894867 AATGTGATAA
Statistics
Matches: 118, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
143 7 0.06
144 87 0.74
145 24 0.20
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (145 bp):
CTAATGGCCGATGTGATGAATGTGAAAGTGTTATATATTGATAAGGCCGAATGGCCAATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATA
TATATGTGATAAGGC
Found at i:45897073 original size:31 final size:33
Alignment explanation
Indices: 45897036--45897240 Score: 162
Period size: 41 Copynumber: 5.5 Consensus size: 33
45897026 CCGAAGAGCA
*
45897036 GTGCTAGTGATGTATCCT-AG-TAAGAGCATTC
1 GTGCTAGTGATGTATCCTAAGCGAAGAGCATTC
45897067 GTGCTAGTGATGTATCCGGACTAAGCGAAGAGCATTC
1 GTGCTAGTGATGTAT-C---CTAAGCGAAGAGCATTC
45897104 GTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTC
1 GTGCTAGTGATGTAT-C---CTAAG---CGAAGAGCATTC
45897144 GTGCTAGTGATGTATCCGGACTAAGTTCCCGAAGAGCATTC
1 GTGCTAGTGATGTAT-C---CTAAG----CGAAGAGCATTC
45897185 GTGCTAGTGATGTATCCGGACTAAGTCCGAAGAGCATTC
1 GTGCTAGTGATGTAT-C---CTAAG--CGAAGAGCATTC
45897224 GTGCTAGTGATGTATCC
1 GTGCTAGTGATGTATCC
45897241 GGCTAGGTCC
Statistics
Matches: 161, Mismatches: 3, Indels: 16
0.89 0.02 0.09
Matches are distributed among these distances:
31 15 0.09
32 1 0.01
35 3 0.02
36 2 0.01
37 35 0.22
38 1 0.01
39 28 0.17
40 37 0.23
41 39 0.24
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (33 bp):
GTGCTAGTGATGTATCCTAAGCGAAGAGCATTC
Found at i:45897188 original size:41 final size:39
Alignment explanation
Indices: 45897057--45897257 Score: 338
Period size: 37 Copynumber: 5.2 Consensus size: 39
45897047 GTATCCTAGT
45897057 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAG--CG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCG
45897094 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAG-TCCG
45897134 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAG-T-CCG
45897175 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCG
*
45897214 AAGAGCATTCGTGCTAGTGATGTATCCGG-CTAGGTCC-
1 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCG
45897251 AAGAGCA
1 AAGAGCA
45897258 ATCATGCTGG
Statistics
Matches: 159, Mismatches: 1, Indels: 8
0.95 0.01 0.05
Matches are distributed among these distances:
37 42 0.26
38 7 0.04
39 32 0.20
40 40 0.25
41 38 0.24
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (39 bp):
AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCG
Found at i:45897207 original size:81 final size:76
Alignment explanation
Indices: 45897057--45897242 Score: 327
Period size: 81 Copynumber: 2.4 Consensus size: 76
45897047 GTATCCTAGT
45897057 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGCGAAGAGCATTCGTGCTAGTGATGTATCCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGCGAAGAGCATTCGTGCTAGTGATGTATCCG
45897122 GACTAAGTTCCG
66 GACTAAG-TCCG
45897134 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAG----CGAAGAGCATTCGTGCTAGTGATGTA
45897199 TCCGGACTAAGTCCG
62 TCCGGACTAAGTCCG
45897214 AAGAGCATTCGTGCTAGTGATGTATCCGG
1 AAGAGCATTCGTGCTAGTGATGTATCCGG
45897243 CTAGGTCCAA
Statistics
Matches: 105, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
77 35 0.33
80 33 0.31
81 37 0.35
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (76 bp):
AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGCGAAGAGCATTCGTGCTAGTGATGTATCCG
GACTAAGTCCG
Found at i:45901031 original size:47 final size:47
Alignment explanation
Indices: 45900895--45901306 Score: 655
Period size: 47 Copynumber: 8.7 Consensus size: 47
45900885 GATTTTACGC
* *
45900895 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGT
45900944 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
45900993 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
45901040 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
45901087 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGT
45901136 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CGATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * *
45901182 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
45901229 GATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* *
45901276 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
45901307 TCCCGAGGGC
Statistics
Matches: 346, Mismatches: 12, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
46 44 0.13
47 194 0.56
49 105 0.30
51 3 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Done.