Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 151 of 425
Found at i:45901038 original size:96 final size:94
Alignment explanation
Indices: 45900895--45901306 Score: 655
Period size: 96 Copynumber: 4.3 Consensus size: 94
45900885 GATTTTACGC
* *
45900895 GATGAATGTGAATGTGTATAAATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
45900960 TATATATATGTGATAAGGCCTAATGGCCGATGT
64 --TATATATGTGATAAGGCCTAATGGCCGATGT
45900993 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
45901058 TATATGTGATAAGGCCTAATGGCCGATGT
66 TATATGTGATAAGGCCTAATGGCCGATGT
45901087 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
45901152 TATATATGTGATAAGGCCTAATGG-CGATGT
64 TATATATGTGATAAGGCCTAATGGCCGATGT
* * *
45901182 GATGAATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * *
45901247 TATATGTGATAGGGCCGAGTGGCCAACGT
66 TATATGTGATAAGGCCTAATGGCCGATGT
* *
45901276 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
45901307 TCCCGAGGGC
Statistics
Matches: 298, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
93 66 0.22
94 79 0.27
95 21 0.07
96 114 0.38
98 18 0.06
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCTAATGGCCGATGT
Found at i:45901206 original size:25 final size:24
Alignment explanation
Indices: 45901178--45901256 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 24
45901168 CCTAATGGCG
45901178 ATGTGATGAATGTGAAGGTGTATAT
1 ATGTGATGAATGTGAA-GTGTATAT
* * ***
45901203 ATGTGAT-AAGGCCGAA-TGGCCA-
1 ATGTGATGAATG-TGAAGTGTATAT
45901225 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTG-AAGTGTATAT
45901250 ATGTGAT
1 ATGTGAT
45901257 AGGGCCGAGT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 6 0.15
25 17 0.44
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.32
Consensus pattern (24 bp):
ATGTGATGAATGTGAAGTGTATAT
Found at i:45903926 original size:25 final size:25
Alignment explanation
Indices: 45903872--45903926 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
45903862 CGCATCAGTG
45903872 TTGGCCATGTGTTTTGGTTGTTGAA
1 TTGGCCATGTGTTTTGGTTGTTGAA
* * * *
45903897 ATGGCTATTTGTTTTGGCTT-TTGAT
1 TTGGCCATGTGTTTTGG-TTGTTGAA
45903922 TTGGC
1 TTGGC
45903927 ACTTTGATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.11, C:0.09, G:0.29, T:0.51
Consensus pattern (25 bp):
TTGGCCATGTGTTTTGGTTGTTGAA
Found at i:45918441 original size:28 final size:27
Alignment explanation
Indices: 45918378--45918447 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
45918368 ATAGTGTGTC
*
45918378 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
45918405 CACACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
45918433 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45918448 GTACAAGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 20 0.53
28 18 0.47
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:45928350 original size:25 final size:24
Alignment explanation
Indices: 45928287--45928354 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
45928277 ATTCCAAGCC
*
45928287 ACAGTTCATGAGAGCATACCGATT
1 ACAGCTCATGAGAGCATACCGATT
** *
45928311 ACAGCTTGTGAGAGCGTACCGATTT
1 ACAGCTCATGAGAGCATACCGA-TT
*
45928336 ACAGCTCATGTGAGCATAC
1 ACAGCTCATGAGAGCATAC
45928355 ATGTACAGGA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
24 18 0.51
25 17 0.49
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (24 bp):
ACAGCTCATGAGAGCATACCGATT
Found at i:45929176 original size:30 final size:30
Alignment explanation
Indices: 45929140--45929202 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
45929130 AAGTTAATTC
45929140 AATAGCTTGAATTTATGCAATCTAGATTGT
1 AATAGCTTGAATTTATGCAATCTAGATTGT
*
45929170 AATAGCTTGAATTTATGCAATCTGGATTGT
1 AATAGCTTGAATTTATGCAATCTAGATTGT
45929200 AAT
1 AAT
45929203 TTAGTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (30 bp):
AATAGCTTGAATTTATGCAATCTAGATTGT
Found at i:45933575 original size:15 final size:13
Alignment explanation
Indices: 45933546--45933572 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45933536 GCTCGGCAGG
45933546 GACACGCCCGTGT
1 GACACGCCCGTGT
45933559 GACACGCCCGTGT
1 GACACGCCCGTGT
45933572 G
1 G
45933573 TGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:45937731 original size:53 final size:55
Alignment explanation
Indices: 45937673--45937809 Score: 152
Period size: 55 Copynumber: 2.5 Consensus size: 55
45937663 TAGGCCTATT
* * *
45937673 CCCGTGTTAATTTAACAGGTTCGACCACGG-GCTA-GACACGGGCATGTCGTATG
1 CCCGTGTTATTTTAACAGGTTCGACCACGGTGCTACAACACGGGCATGTCGAATG
* ** * *
45937726 CCCGTGCTATTTTCCCAGGTTCAACCACGGTTCTACAACACGGGCATGTCGAATG
1 CCCGTGTTATTTTAACAGGTTCGACCACGGTGCTACAACACGGGCATGTCGAATG
* ** *
45937781 CTCGTGTTATTTTGTCAGGTTCGGCCACG
1 CCCGTGTTATTTTAACAGGTTCGACCACG
45937810 CCATGTCAAA
Statistics
Matches: 68, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
53 25 0.37
54 3 0.04
55 40 0.59
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.28
Consensus pattern (55 bp):
CCCGTGTTATTTTAACAGGTTCGACCACGGTGCTACAACACGGGCATGTCGAATG
Found at i:45944036 original size:28 final size:27
Alignment explanation
Indices: 45943973--45944042 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
45943963 ATAGTGAGTC
45943973 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
45944000 CGCACACTTACTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
45944028 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45944043 GTTCAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:45950486 original size:29 final size:30
Alignment explanation
Indices: 45950453--45950510 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
45950443 AAATTAATTT
*
45950453 TCAA-GCCTAAGGGTAAAATGGTCATTTTG
1 TCAAGGCCTAAGGGCAAAATGGTCATTTTG
* *
45950482 TCAAGGTCTAGGGGCAAAATGGTCATTTT
1 TCAAGGCCTAAGGGCAAAATGGTCATTTT
45950511 ACCAAAGAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (30 bp):
TCAAGGCCTAAGGGCAAAATGGTCATTTTG
Found at i:45951042 original size:47 final size:46
Alignment explanation
Indices: 45950863--45951072 Score: 182
Period size: 46 Copynumber: 4.5 Consensus size: 46
45950853 TGTGAGAACT
* * *
45950863 AGTGTAAGACCATGTCTGGGACATTGCATCGGCATTGAGACTAGT-A-CT
1 AGTGTAAGACCATGTCTGGGACA-TGCATCGAC-TCGAGA-TA-TAAGCC
45950911 AGTGTAAGA-CATGTCTGGGACATGCATCGACCTCGAGA-AGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGA-CTCGAGATA-TAAGCC
* * *
45950957 AGTGTAAGA-CATGTCT-GGAGCATGCGTCGGCTACGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGA-CATGCATCGACT-CGAGAT-ATAAGCC
* * *
45951003 AGTGTAAGACCATGTCTAGGACATGGCTTCGACTTGAGATATAAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGATATAAGCC
* *
45951050 AGTGTAAGACCGTGTTTGGGACA
1 AGTGTAAGACCATGTCTGGGACA
45951073 CGACATCGGT
Statistics
Matches: 138, Mismatches: 13, Indels: 23
0.79 0.07 0.13
Matches are distributed among these distances:
44 3 0.02
45 6 0.04
46 56 0.41
47 53 0.38
48 20 0.14
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATATAAGCC
Found at i:45964941 original size:46 final size:46
Alignment explanation
Indices: 45964891--45965066 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
45964881 TGGTTGAGCA
45964891 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAAG
* *
45964937 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA--A-G
* * *
45964982 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAAG
* *
45965030 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45965067 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 1 0.01
45 3 0.03
46 63 0.57
47 28 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAAG
Found at i:45965047 original size:93 final size:93
Alignment explanation
Indices: 45964888--45965058 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
45964878 GGATGGTTGA
* *
45964888 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAAGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAGT
45964953 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
45964981 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAGT
45965046 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45965059 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45968035 original size:15 final size:14
Alignment explanation
Indices: 45968015--45968077 Score: 74
Period size: 15 Copynumber: 4.4 Consensus size: 14
45968005 GTATCTTAGG
45968015 TTTCTTTATTCTGGA
1 TTTCTTTATTC-GGA
45968030 TTTCTTTATTCGG-
1 TTTCTTTATTCGGA
* *
45968043 TTTCTCTATCTTGGA
1 TTTCTTTAT-TCGGA
*
45968058 TTTCTTTATTCGGT
1 TTTCTTTATTCGGA
45968072 TTTCTT
1 TTTCTT
45968078 GTTATCTTTG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 8 0.20
14 14 0.34
15 19 0.46
ACGTcount: A:0.10, C:0.16, G:0.13, T:0.62
Consensus pattern (14 bp):
TTTCTTTATTCGGA
Found at i:45968045 original size:28 final size:28
Alignment explanation
Indices: 45968013--45968073 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
45968003 TCGTATCTTA
*
45968013 GGTTTCTTTAT-TCTGGATTTCTTTATTC
1 GGTTTCTCTATCT-TGGATTTCTTTATTC
45968041 GGTTTCTCTATCTTGGATTTCTTTATTC
1 GGTTTCTCTATCTTGGATTTCTTTATTC
45968069 GGTTT
1 GGTTT
45968074 TCTTGTTATC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 30 0.97
29 1 0.03
ACGTcount: A:0.10, C:0.15, G:0.16, T:0.59
Consensus pattern (28 bp):
GGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:45970509 original size:46 final size:46
Alignment explanation
Indices: 45970459--45970633 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
45970449 ATGGTGAGCA
45970459 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
45970505 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
45970550 CATCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
45970597 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
45970634 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 86 0.77
47 6 0.05
49 5 0.05
50 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:45970620 original size:92 final size:93
Alignment explanation
Indices: 45970456--45970625 Score: 315
Period size: 92 Copynumber: 1.8 Consensus size: 93
45970446 AGGATGGTGA
*
45970456 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
45970521 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
45970549 GCATCC-AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
45970613 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45970626 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 69 0.92
93 6 0.08
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:45975016 original size:47 final size:47
Alignment explanation
Indices: 45974885--45975044 Score: 166
Period size: 46 Copynumber: 3.4 Consensus size: 47
45974875 GACGAGTGCT
** * **
45974885 AGTGTAAGA-CATGTCTGGGACATGCGTCGGCCACGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCGTCAACTACGAGATATAAGCC
**
45974931 AGTGTAAGA-CATGTCTGGGACATGCGTCAACTACGAGATGAT-AGTT
1 AGTGTAAGACCATGTCTGGGACATGCGTCAACTACGAGAT-ATAAGCC
* ** *
45974977 AGTGTAAGACCATGTCTGGGACATTGCTTTGACT-TGAGATATAAGCC
1 AGTGTAAGACCATGTCTGGGACA-TGCGTCAACTACGAGATATAAGCC
*
45975024 AGTGTAAGACCGTGTCTGGGA
1 AGTGTAAGACCATGTCTGGGA
45975045 TATGACATCG
Statistics
Matches: 96, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
46 48 0.50
47 41 0.43
48 7 0.07
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCGTCAACTACGAGATATAAGCC
Found at i:45978563 original size:14 final size:15
Alignment explanation
Indices: 45978546--45978574 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45978536 AAGTATGGTA
45978546 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
45978560 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
45978575 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:45978903 original size:17 final size:18
Alignment explanation
Indices: 45978864--45978897 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
45978854 TAGTATAGTA
*
45978864 AAATA-TTAAAAATAAGT
1 AAATATTTAAAAAAAAGT
45978881 AAATATTTAAAAAAAAG
1 AAATATTTAAAAAAAAG
45978898 ATATATCAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
AAATATTTAAAAAAAAGT
Found at i:45979246 original size:11 final size:10
Alignment explanation
Indices: 45979230--45979266 Score: 65
Period size: 10 Copynumber: 3.6 Consensus size: 10
45979220 ATAATATGAG
45979230 AAAATATTAAA
1 AAAATA-TAAA
45979241 AAAATATAAA
1 AAAATATAAA
45979251 AAAATATAAA
1 AAAATATAAA
45979261 AAAATA
1 AAAATA
45979267 GAAATTGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 20 0.77
11 6 0.23
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (10 bp):
AAAATATAAA
Found at i:45981135 original size:16 final size:15
Alignment explanation
Indices: 45981104--45981147 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 15
45981094 GGCATGTCAC
45981104 ATTAAAAAAATTTTAAA
1 ATTAAAAAAA--TTAAA
45981121 ATATAAAAAAATTAAA
1 AT-TAAAAAAATTAAA
*
45981137 ATTAATAAAAT
1 ATTAAAAAAAT
45981148 CATATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 8 0.32
16 7 0.28
17 2 0.08
18 8 0.32
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
ATTAAAAAAATTAAA
Found at i:45981144 original size:18 final size:17
Alignment explanation
Indices: 45981106--45981147 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
45981096 CATGTCACAT
45981106 TAAAAAAATTTTAAAATA
1 TAAAAAAA-TTTAAAATA
45981124 TAAAAAAA-TTAAAAT-
1 TAAAAAAATTTAAAATA
*
45981139 TAATAAAAT
1 TAAAAAAAT
45981148 CATATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 7 0.32
16 7 0.32
18 8 0.36
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAAAAATTTAAAATA
Found at i:45987296 original size:14 final size:15
Alignment explanation
Indices: 45987279--45987307 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
45987269 GCACAAAAAT
45987279 TTCACACAT-ATAAA
1 TTCACACATAATAAA
45987293 TTCACACATAATAAA
1 TTCACACATAATAAA
45987308 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:45991010 original size:63 final size:63
Alignment explanation
Indices: 45990929--45991052 Score: 194
Period size: 63 Copynumber: 2.0 Consensus size: 63
45990919 ACATCCTTAA
* *
45990929 TTGTTTACTTGTTTAGTTAAATATTATTCATATAATCTTTTTCATAATTGCCATTGCATTTAG
1 TTGTTTACTTGTTCAGTTAAATATTATTCATATAATCATTTTCATAATTGCCATTGCATTTAG
* * * *
45990992 TTGTTTACTTGTTCAGTTACATCTTATTCATATACTCATTTTCTTAATTGCCATTGCATTT
1 TTGTTTACTTGTTCAGTTAAATATTATTCATATAATCATTTTCATAATTGCCATTGCATTT
45991053 TTACTCTTGC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.52
Consensus pattern (63 bp):
TTGTTTACTTGTTCAGTTAAATATTATTCATATAATCATTTTCATAATTGCCATTGCATTTAG
Found at i:45991536 original size:20 final size:20
Alignment explanation
Indices: 45991511--45991550 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
45991501 CTGTTTTTAC
45991511 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
45991531 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
45991551 TTTAAATTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATATTAATAAATTTATAT
Found at i:45991555 original size:16 final size:18
Alignment explanation
Indices: 45991506--45991550 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
45991496 AAAAGCTGTT
* *
45991506 TTTACATATATTAATAAA
1 TTTATATATTTTAATAAA
45991524 TTTATATATATATTAATAAA
1 TTTATATAT-T-TTAATAAA
45991544 TTTATAT
1 TTTATAT
45991551 TTTAAATTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 8 0.35
20 15 0.65
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTATATATTTTAATAAA
Found at i:45991612 original size:14 final size:14
Alignment explanation
Indices: 45991593--45991660 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
45991583 TATTTATAAA
*
45991593 TAAATAAATCAAAT
1 TAAATATATCAAAT
*
45991607 TAAATATATAATAAT
1 TAAATATATCA-AAT
*
45991622 ACTCAAT-TAT-AAA-
1 --TAAATATATCAAAT
*
45991635 TAAATAAATCAAAT
1 TAAATATATCAAAT
45991649 TAAATATATCAA
1 TAAATATATCAA
45991661 TCAAATGGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
11 4 0.10
12 2 0.05
13 3 0.07
14 22 0.52
15 4 0.10
16 3 0.07
17 4 0.10
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.32
Consensus pattern (14 bp):
TAAATATATCAAAT
Found at i:45991612 original size:18 final size:18
Alignment explanation
Indices: 45991589--45991666 Score: 75
Period size: 18 Copynumber: 4.0 Consensus size: 18
45991579 GATTTATTTA
45991589 TAAATAAATAAATCAAAT
1 TAAATAAATAAATCAAAT
*
45991607 TAAATATATAATAATACTCAATT
1 T-AA-ATA-AATAA-A-TCAAAT
45991630 ATAAATAAATAAATCAAAT
1 -TAAATAAATAAATCAAAT
* *
45991649 TAAATATATCAATCAAAT
1 TAAATAAATAAATCAAAT
45991667 GGTTTAATTG
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
18 17 0.34
19 7 0.14
20 4 0.08
21 10 0.20
22 4 0.08
23 7 0.14
24 1 0.02
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAATAAATAAATCAAAT
Found at i:45994181 original size:6 final size:6
Alignment explanation
Indices: 45994167--45994208 Score: 66
Period size: 6 Copynumber: 7.0 Consensus size: 6
45994157 AAGGATGGGA
* *
45994167 GAAGTG GAAGGG GAAAGG GAAGGG GAAGGG GAAGGG GAAGGG
1 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG
45994209 AAGATTGGTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.36, C:0.00, G:0.62, T:0.02
Consensus pattern (6 bp):
GAAGGG
Found at i:45994184 original size:24 final size:24
Alignment explanation
Indices: 45994167--45994211 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
45994157 AAGGATGGGA
*
45994167 GAAGTGGAAGGGGAAAGGGAAGGG
1 GAAGGGGAAGGGGAAAGGGAAGGG
45994191 GAAGGGGAAGGGG-AAGGGAAG
1 GAAGGGGAAGGGGAAAGGGAAG
45994212 ATTGGTGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.38, C:0.00, G:0.60, T:0.02
Consensus pattern (24 bp):
GAAGGGGAAGGGGAAAGGGAAGGG
Found at i:46002639 original size:19 final size:19
Alignment explanation
Indices: 46002615--46002652 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
46002605 CTTAACTTGC
46002615 CTTTTCTACCGAATCTCAA
1 CTTTTCTACCGAATCTCAA
46002634 CTTTTCTACCGAATCTCAA
1 CTTTTCTACCGAATCTCAA
46002653 AACCTTCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.32, G:0.05, T:0.37
Consensus pattern (19 bp):
CTTTTCTACCGAATCTCAA
Found at i:46007462 original size:35 final size:35
Alignment explanation
Indices: 46007362--46007520 Score: 135
Period size: 35 Copynumber: 4.5 Consensus size: 35
46007352 AATACTCAAG
* * * *
46007362 GTTCATTATATCATCACATATCGCCAAATATACAA
1 GTTCAATATAACATCACATGTAGCCAAATATACAA
* * * *
46007397 GTGCAATATATA-A-C-CATATATGATCGAATATACAA
1 GTTCAATATA-ACATCACATGTA-G-CCAAATATACAA
* * *
46007432 GCTCAATATAACATCACATGTAGTCAAATATTCAA
1 GTTCAATATAACATCACATGTAGCCAAATATACAA
** *
46007467 GTTTGATATAACATCACATGTGGCCAAATATACAA
1 GTTCAATATAACATCACATGTAGCCAAATATACAA
*
46007502 GTTCAATATATCATCACAT
1 GTTCAATATAACATCACAT
46007521 ATGTACATAC
Statistics
Matches: 98, Mismatches: 20, Indels: 12
0.75 0.15 0.09
Matches are distributed among these distances:
33 5 0.05
34 3 0.03
35 83 0.85
36 2 0.02
37 5 0.05
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (35 bp):
GTTCAATATAACATCACATGTAGCCAAATATACAA
Found at i:46010408 original size:22 final size:22
Alignment explanation
Indices: 46010383--46010430 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
46010373 ATACAAAGCC
*
46010383 ACACGCCCGTGTGAGACAAGGG
1 ACACGCCCATGTGAGACAAGGG
*
46010405 ACACTCCCATGTGAGACAAGGG
1 ACACGCCCATGTGAGACAAGGG
46010427 ACAC
1 ACAC
46010431 ATGTGACAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.31, C:0.29, G:0.29, T:0.10
Consensus pattern (22 bp):
ACACGCCCATGTGAGACAAGGG
Found at i:46012275 original size:40 final size:40
Alignment explanation
Indices: 46012217--46012357 Score: 133
Period size: 40 Copynumber: 3.5 Consensus size: 40
46012207 TGAATGATAC
* * * *
46012217 CCGGGCTAAGTCCTGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTG-TTATAT
* *
46012257 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
* * *** *
46012297 CCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGC-ATTCATGCGAGTTGTTATAT
*
46012337 CCGGGTTAAGACCCGAAGGCA
1 CCGGGCTAAGACCCGAAGGCA
46012358 ATTGTGCTTG
Statistics
Matches: 86, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 80 0.93
41 5 0.06
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGTTATAT
Found at i:46012358 original size:40 final size:40
Alignment explanation
Indices: 46012259--46012364 Score: 142
Period size: 40 Copynumber: 2.6 Consensus size: 40
46012249 GATTATATCT
* *** *
46012259 GGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCAATT-GTGCAAGTTACCAAATCC
46012299 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCC
1 GGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCC
*
46012339 GGGTTAAGACCCGAAGGCAATTGTGC
1 GGGCTAAGACCCGAAGGCAATTGTGC
46012365 TTGTGGTTAA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 56 0.95
41 3 0.05
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAATCC
Found at i:46020363 original size:40 final size:40
Alignment explanation
Indices: 46020308--46020470 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
46020298 TGAATGATAC
* * *
46020308 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
46020348 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * ** *
46020388 CCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
46020428 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA-AT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
46020467 CCGG
1 CCGG
46020471 TTAAATCCCG
Statistics
Matches: 103, Mismatches: 16, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
39 9 0.09
40 89 0.86
41 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:46023482 original size:43 final size:43
Alignment explanation
Indices: 46023434--46023517 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
46023424 ATCACATGTA
*
46023434 TCGCATCCATTATCAACTCAGACCACTCAACCAGCTCGGATGC
1 TCGCATCCATAATCAACTCAGACCACTCAACCAGCTCGGATGC
* * * *
46023477 TCGCATCCATAATGAACTCGGACCACTCAACGAGCTTGGAT
1 TCGCATCCATAATCAACTCAGACCACTCAACCAGCTCGGAT
46023518 TCCACATATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (43 bp):
TCGCATCCATAATCAACTCAGACCACTCAACCAGCTCGGATGC
Found at i:46024132 original size:8 final size:8
Alignment explanation
Indices: 46024119--46024144 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
46024109 TATTACTACT
46024119 CACTTTTA
1 CACTTTTA
46024127 CACTTTTA
1 CACTTTTA
46024135 CACTTTTA
1 CACTTTTA
46024143 CA
1 CA
46024145 AACAAGTCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.46
Consensus pattern (8 bp):
CACTTTTA
Found at i:46028336 original size:39 final size:39
Alignment explanation
Indices: 46028139--46028324 Score: 327
Period size: 39 Copynumber: 4.8 Consensus size: 39
46028129 AATTTTATTA
*
46028139 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
46028178 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
46028217 CCAGCACGAAGCCTGCGGGTCTTTGGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
46028256 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
46028295 CCAGCACAAAGCCTGCGGGTCTTTAGCCCG
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCG
46028325 AATCTATTTC
Statistics
Matches: 138, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 138 1.00
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.22
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:46031697 original size:31 final size:31
Alignment explanation
Indices: 46031656--46031719 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
46031646 CCTTTTCATA
*
46031656 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
46031687 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
46031718 TT
1 TT
46031720 ACGTAAACGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:46031962 original size:24 final size:24
Alignment explanation
Indices: 46031910--46032099 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
46031900 GCTTTATCAT
*
46031910 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
46031935 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
46031959 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
46031982 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
46032006 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
46032030 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
46032054 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
46032077 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
46032100 CACTTCCTCC
Statistics
Matches: 153, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 43 0.28
24 98 0.64
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:46031986 original size:47 final size:48
Alignment explanation
Indices: 46031910--46032099 Score: 296
Period size: 47 Copynumber: 4.0 Consensus size: 48
46031900 GCTTTATCAT
* * *
46031910 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTG
*
46031959 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
*
46032006 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
46032054 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
46032100 CACTTCCTCC
Statistics
Matches: 132, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
47 70 0.53
48 50 0.38
49 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTG
Found at i:46032010 original size:71 final size:72
Alignment explanation
Indices: 46031910--46032099 Score: 287
Period size: 71 Copynumber: 2.7 Consensus size: 72
46031900 GCTTTATCAT
* * *
46031910 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAA
46031974 GCCC-TTTA
64 GCCCTTTTA
* *
46031982 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
*
46032047 CCTTTTG
66 CCTTTTA
46032054 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
46032100 CACTTCCTCC
Statistics
Matches: 109, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
71 76 0.70
72 33 0.30
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTTA
Found at i:46032170 original size:9 final size:9
Alignment explanation
Indices: 46032156--46032232 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
46032146 ATCTCGTGTG
46032156 CATATCATA
1 CATATCATA
*
46032165 CATATCATGTG
1 CATATCA--TA
46032176 CATATCATA
1 CATATCATA
* *
46032185 CATGTCATGTG
1 CATATCA--TA
46032196 CATATCATA
1 CATATCATA
*
46032205 CATATCATGTG
1 CATATCA--TA
46032216 CATATCATA
1 CATATCATA
46032225 CATATCAT
1 CATATCAT
46032233 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:46032175 original size:20 final size:20
Alignment explanation
Indices: 46032152--46032234 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
46032142 GAACATCTCG
46032152 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
46032172 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
46032192 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
46032212 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
46032232 TGT
1 TGT
46032235 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:46032181 original size:11 final size:11
Alignment explanation
Indices: 46032152--46032223 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
46032142 GAACATCTCG
46032152 TGTGCATATCA
1 TGTGCATATCA
*
46032163 --TACATATCA
1 TGTGCATATCA
46032172 TGTGCATATCA
1 TGTGCATATCA
* *
46032183 --TACATGTCA
1 TGTGCATATCA
46032192 TGTGCATATCA
1 TGTGCATATCA
*
46032203 --TACATATCA
1 TGTGCATATCA
46032212 TGTGCATATCA
1 TGTGCATATCA
46032223 T
1 T
46032224 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:46032317 original size:25 final size:25
Alignment explanation
Indices: 46032271--46032318 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
46032261 ATATATAAAC
* * * *
46032271 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
46032296 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
46032319 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:46033573 original size:27 final size:27
Alignment explanation
Indices: 46033553--46034023 Score: 557
Period size: 27 Copynumber: 17.6 Consensus size: 27
46033543 AGGGTATTTT
*
46033553 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
46033580 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
46033607 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
46033634 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
46033661 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
46033688 -GATAATTATGTAAATCG-GGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
46033714 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
46033741 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
46033768 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
46033795 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
46033822 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
46033849 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
46033876 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
46033903 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
46033930 GGTAATTCTGTAAATCGAGGGT-AAA-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
46033955 AGTAATTCTGT-ACT-GAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
46033980 GGTAATTCTATAAA-CTGAGGGTAAAAT
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
46034007 GGTAATTCTATAAATCG
1 AGTAATTCTGTAAATCG
46034024 GGAGTACTTT
Statistics
Matches: 391, Mismatches: 38, Indels: 30
0.85 0.08 0.07
Matches are distributed among these distances:
23 6 0.02
24 5 0.01
25 19 0.05
26 28 0.07
27 329 0.84
28 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:46036898 original size:31 final size:31
Alignment explanation
Indices: 46036857--46036920 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
46036847 CCTTTTCATA
*
46036857 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
46036888 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
46036919 TT
1 TT
46036921 ACGGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:46037165 original size:24 final size:24
Alignment explanation
Indices: 46037113--46037302 Score: 278
Period size: 24 Copynumber: 8.0 Consensus size: 24
46037103 GCTTTATCAT
*
46037113 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
46037138 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
46037162 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
46037185 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
46037209 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
46037233 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
46037257 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
46037280 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
46037303 TCACTTCCTC
Statistics
Matches: 153, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
23 43 0.28
24 98 0.64
25 12 0.08
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:46037189 original size:47 final size:48
Alignment explanation
Indices: 46037112--46037303 Score: 291
Period size: 47 Copynumber: 4.0 Consensus size: 48
46037102 TGCTTTATCA
* *
46037112 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
46037161 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
46037208 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
46037256 GATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
46037303 T
1 T
46037304 CACTTCCTCC
Statistics
Matches: 133, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
47 70 0.53
48 50 0.38
49 13 0.10
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:46037213 original size:71 final size:72
Alignment explanation
Indices: 46037113--46037303 Score: 289
Period size: 71 Copynumber: 2.7 Consensus size: 72
46037103 GCTTTATCAT
* *
46037113 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAA
46037177 GCCC-TTTA
64 GCCCTTTTA
* * *
46037185 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
*
46037250 CCTTTTG
66 CCTTTTA
46037257 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
46037304 CACTTCCTCC
Statistics
Matches: 109, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
71 76 0.70
72 33 0.30
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGC
CCTTTTA
Found at i:46037374 original size:9 final size:9
Alignment explanation
Indices: 46037360--46037436 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
46037350 ATCTCGTGTG
46037360 CATATCATA
1 CATATCATA
*
46037369 CATATCATGTG
1 CATATCA--TA
46037380 CATATCATA
1 CATATCATA
* *
46037389 CATGTCATGTG
1 CATATCA--TA
46037400 CATATCATA
1 CATATCATA
*
46037409 CATATCATGTG
1 CATATCA--TA
46037420 CATATCATA
1 CATATCATA
46037429 CATATCAT
1 CATATCAT
46037437 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:46037379 original size:20 final size:20
Alignment explanation
Indices: 46037356--46037438 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
46037346 GAACATCTCG
46037356 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
46037376 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
46037396 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
46037416 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
46037436 TGT
1 TGT
46037439 TTATCAAAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:46037385 original size:11 final size:11
Alignment explanation
Indices: 46037356--46037427 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
46037346 GAACATCTCG
46037356 TGTGCATATCA
1 TGTGCATATCA
*
46037367 --TACATATCA
1 TGTGCATATCA
46037376 TGTGCATATCA
1 TGTGCATATCA
* *
46037387 --TACATGTCA
1 TGTGCATATCA
46037396 TGTGCATATCA
1 TGTGCATATCA
*
46037407 --TACATATCA
1 TGTGCATATCA
46037416 TGTGCATATCA
1 TGTGCATATCA
46037427 T
1 T
46037428 ACATATCATG
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
TGTGCATATCA
Found at i:46038780 original size:27 final size:27
Alignment explanation
Indices: 46038759--46039285 Score: 543
Period size: 27 Copynumber: 19.7 Consensus size: 27
46038749 AAGGGTATTT
*
46038759 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
46038786 CAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
46038813 CAGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
46038840 TGGTAATTCTGTAAAT-GAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
*
46038866 TGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
46038893 -CGATAATTATGTAAAT-G-GGGTAAAA
1 TAG-TAATTCTGTAAATCGAGGGTAAAA
* * *
46038918 TGGTAATTATGTAAAT-TAGGGGTAAAA
1 TAGTAATTCTGTAAATCGA-GGGTAAAA
** *
46038945 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
46038972 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
46038999 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * **
46039026 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** *
46039053 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
46039080 CAGTAATT-TGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
46039106 CAATAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
** *
46039133 CGGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
46039160 TAGTAATTCTGTAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
46039187 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
** * **
46039214 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTCTGTAAATCGAGGGTAAAA
* *
46039241 CAGTAATTCTATAAA-CTGAGGGTAAAA
1 TAGTAATTCTGTAAATC-GAGGGTAAAA
**
46039268 CGGTAATTCTGTAAATCG
1 TAGTAATTCTGTAAATCG
46039286 GGAGTACTTT
Statistics
Matches: 438, Mismatches: 47, Indels: 30
0.85 0.09 0.06
Matches are distributed among these distances:
25 21 0.05
26 56 0.13
27 356 0.81
28 5 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:46039302 original size:54 final size:54
Alignment explanation
Indices: 46038761--46039285 Score: 663
Period size: 54 Copynumber: 9.8 Consensus size: 54
46038751 GGGTATTTTA
* * * *
46038761 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
46038815 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAAT-GAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * *
46038868 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAAT-G-GGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* * * **
46038920 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
46038974 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* ** * *
46039028 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
* **
46039082 GTAATT-TGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
* **
46039135 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACG
* ** *
46039189 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
*
46039243 GTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCG
1 GTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGTAAATCG
46039286 GGAGTACTTT
Statistics
Matches: 414, Mismatches: 47, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
51 1 0.00
52 45 0.11
53 93 0.22
54 272 0.66
55 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:46039308 original size:81 final size:80
Alignment explanation
Indices: 46038760--46039285 Score: 666
Period size: 81 Copynumber: 6.5 Consensus size: 80
46038750 AGGGTATTTT
* * * *
46038760 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTAT
1 AGTAATTCTGTAAAT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
*
46038825 AAATCGAGGGTAAAAT
65 AAATCGAGGGTAAAAC
* * * * *
46038841 GGTAATTCTGTAAATGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
1 AGTAATTCTGTAAATGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
*
46038906 AAT-G-GGGTAAAAT
66 AATCGAGGGTAAAAC
* * * * ** *
46038919 GGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGT
1 AGTAATTCTGTAAATGA-GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
46038984 AAA-CTGAGGGTAAAAC
65 AAATC-GAGGGTAAAAC
* * **
46039000 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT
1 AGTAATTCTGTAAAT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
46039065 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
* ** *
46039081 AGTAATT-TGTAAATCAAGGGTAAAACAATAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTG
1 AGTAATTCTGTAAAT-GAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTA
* *
46039144 TAAATCAAGGGTAAAAT
64 TAAATCGAGGGTAAAAC
* *
46039161 AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAC
1 AGTAATTCTGTAAA-TGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
46039226 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
*
46039242 AGTAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCG
1 AGTAATTCTGTAAA-TGAGGGTAAAACGGTAATTCTGTAAATCG
46039286 GGAGTACTTT
Statistics
Matches: 391, Mismatches: 44, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
78 24 0.06
79 46 0.12
80 116 0.30
81 201 0.51
82 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (80 bp):
AGTAATTCTGTAAATGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAAC
Found at i:46041728 original size:15 final size:15
Alignment explanation
Indices: 46041704--46041733 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
46041694 ATCCTAAAAA
*
46041704 TTCTATTTCTATTTT
1 TTCTAATTCTATTTT
46041719 TTCTAATTCTATTTT
1 TTCTAATTCTATTTT
46041734 CTTTGGACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (15 bp):
TTCTAATTCTATTTT
Found at i:46043531 original size:26 final size:26
Alignment explanation
Indices: 46043494--46043551 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
46043484 TGATACAAAT
46043494 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
46043520 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
46043546 TGATAA
1 TGATAA
46043552 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:46045053 original size:26 final size:26
Alignment explanation
Indices: 46045024--46045076 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
46045014 TTTACAGTTT
*
46045024 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCATAGG-GATAAATTGACCGAAA
* *
46045050 TACCCATAGGGTTAAATTGACCTAAA
1 TACCCATAGGGATAAATTGACCGAAA
46045076 T
1 T
46045077 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCATAGGGATAAATTGACCGAAA
Found at i:46049260 original size:26 final size:26
Alignment explanation
Indices: 46049223--46049306 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
46049213 TGATACAAAT
* *
46049223 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
46049249 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
46049275 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
46049301 TGATAA
1 TGATAA
46049307 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:46050815 original size:26 final size:26
Alignment explanation
Indices: 46050786--46050838 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
46050776 TTTACAGTTT
*
46050786 TACCCTTAGGAGATAAATT-ACCGAAA
1 TACCCATAGG-GATAAATTGACCGAAA
* *
46050812 TACCCATAGGGTTAAATTGACCTAAA
1 TACCCATAGGGATAAATTGACCGAAA
46050838 T
1 T
46050839 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCATAGGGATAAATTGACCGAAA
Found at i:46053306 original size:23 final size:23
Alignment explanation
Indices: 46053276--46053324 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
46053266 CTTTACTATG
46053276 TTTATCTAAATAAGATACATATT
1 TTTATCTAAATAAGATACATATT
46053299 TTTATCTAAATAAGATACATATT
1 TTTATCTAAATAAGATACATATT
46053322 TTT
1 TTT
46053325 TTATACATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.47
Consensus pattern (23 bp):
TTTATCTAAATAAGATACATATT
Found at i:46060265 original size:41 final size:40
Alignment explanation
Indices: 46060197--46060324 Score: 121
Period size: 41 Copynumber: 3.1 Consensus size: 40
46060187 ACAAAAATTG
* * *
46060197 TAAAATATAGAGCAATAGCGGCATTTTTGGTAAAACGTCGC
1 TAAAA-ATAAAGCAATAGCGGCATTTTTGCTAAAACGCCGC
* *
46060238 TAAAAATAAAGCGATAGGGGCATTTTTTGCTAAAACGCCGC
1 TAAAAATAAAGCAATAGCGGCA-TTTTTGCTAAAACGCCGC
* * * ** * *
46060279 TAAAAATCAGAGCATTAGCTGCGCTTTCGGTAAAACGCCGC
1 TAAAAAT-AAAGCAATAGCGGCATTTTTGCTAAAACGCCGC
46060320 TAAAA
1 TAAAA
46060325 CCAGAGCATT
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
40 14 0.20
41 48 0.68
42 9 0.13
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (40 bp):
TAAAAATAAAGCAATAGCGGCATTTTTGCTAAAACGCCGC
Found at i:46060341 original size:40 final size:40
Alignment explanation
Indices: 46060268--46060405 Score: 213
Period size: 41 Copynumber: 3.4 Consensus size: 40
46060258 CATTTTTTGC
*
46060268 TAAAACGCCGCTAAAAATCAGAGCATTAGCTGCGCTTTCGG
1 TAAAACGCCGCT-AAAACCAGAGCATTAGCTGCGCTTTCGG
*
46060309 TAAAACGCCGCTAAAACCAGAGCATTAGCTGCGCTTTCGT
1 TAAAACGCCGCTAAAACCAGAGCATTAGCTGCGCTTTCGG
* * *
46060349 TAAAACGTCGCTAAATACCAGAGCATTAGCGGCGCTTTCTG
1 TAAAACGCCGCTAAA-ACCAGAGCATTAGCTGCGCTTTCGG
46060390 TAAAACGCCGCTAAAA
1 TAAAACGCCGCTAAAA
46060406 GTCATATAAC
Statistics
Matches: 89, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
40 41 0.46
41 48 0.54
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (40 bp):
TAAAACGCCGCTAAAACCAGAGCATTAGCTGCGCTTTCGG
Found at i:46060679 original size:14 final size:14
Alignment explanation
Indices: 46060654--46060696 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
46060644 TTTATGATGA
46060654 ATTATGGGTTTAGGG
1 ATTAT-GGTTTAGGG
46060669 ATTATGGTTTAGGG
1 ATTATGGTTTAGGG
* *
46060683 TTTAGGGTTTAGGG
1 ATTATGGTTTAGGG
46060697 TTAGAGTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
14 21 0.81
15 5 0.19
ACGTcount: A:0.19, C:0.00, G:0.40, T:0.42
Consensus pattern (14 bp):
ATTATGGTTTAGGG
Found at i:46060686 original size:7 final size:7
Alignment explanation
Indices: 46060659--46060794 Score: 114
Period size: 7 Copynumber: 19.1 Consensus size: 7
46060649 GATGAATTAT
46060659 GGGTTTA
1 GGGTTTA
*
46060666 GGGATTA
1 GGGTTTA
*
46060673 TGGTTTA
1 GGGTTTA
46060680 GGGTTTA
1 GGGTTTA
46060687 GGGTTTA
1 GGGTTTA
46060694 GGG-TTA
1 GGGTTTA
*
46060700 GAGTTTA
1 GGGTTTA
* *
46060707 AGGTGTAA
1 GGGT-TTA
*
46060715 GGGTTTG
1 GGGTTTA
*
46060722 GGGTTAA
1 GGGTTTA
*
46060729 GGGTTAA
1 GGGTTTA
*
46060736 GGGTTAA
1 GGGTTTA
46060743 GGGTTTA
1 GGGTTTA
46060750 GGGTTTA
1 GGGTTTA
*
46060757 GTGTTTA
1 GGGTTTA
*
46060764 TGGG-ATA
1 -GGGTTTA
*
46060771 GGGGTTAA
1 -GGGTTTA
46060779 GAGGTTTA
1 G-GGTTTA
46060787 GGGTTTA
1 GGGTTTA
46060794 G
1 G
46060795 ATTAATTAGT
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
6 5 0.05
7 84 0.82
8 14 0.14
ACGTcount: A:0.21, C:0.00, G:0.42, T:0.38
Consensus pattern (7 bp):
GGGTTTA
Found at i:46064161 original size:36 final size:36
Alignment explanation
Indices: 46064112--46064184 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
46064102 GTTTATCGAA
*
46064112 AAATTTCAGATTATTGCTCGAGACAAAATACCGCAG
1 AAATTTCAAATTATTGCTCGAGACAAAATACCGCAG
46064148 AAATTTCAAATTATTGCTCGAGACAAAATACCGCAG
1 AAATTTCAAATTATTGCTCGAGACAAAATACCGCAG
46064184 A
1 A
46064185 CTTCCGGTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (36 bp):
AAATTTCAAATTATTGCTCGAGACAAAATACCGCAG
Found at i:46066580 original size:22 final size:22
Alignment explanation
Indices: 46066550--46066603 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
46066540 AGAAAACCAT
*
46066550 TTTATGTGTTAAATGCTGAAAA
1 TTTAGGTGTTAAATGCTGAAAA
*
46066572 TTTAGGTGTTAAATGCTGCAAA
1 TTTAGGTGTTAAATGCTGAAAA
46066594 -TTATGGTGTT
1 TTTA-GGTGTT
46066604 TGAAAGTTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 3 0.10
22 26 0.90
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.43
Consensus pattern (22 bp):
TTTAGGTGTTAAATGCTGAAAA
Found at i:46066689 original size:7 final size:7
Alignment explanation
Indices: 46066677--46066702 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
46066667 TGATTTAATA
46066677 TAATGCT
1 TAATGCT
46066684 TAATGCT
1 TAATGCT
46066691 TAATGCT
1 TAATGCT
46066698 TAATG
1 TAATG
46066703 GTTTGTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (7 bp):
TAATGCT
Found at i:46077903 original size:19 final size:19
Alignment explanation
Indices: 46077879--46077942 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 19
46077869 AGACAGAAAA
46077879 AATTTAAAATAAAATAATT
1 AATTTAAAATAAAATAATT
* * **
46077898 AATTTATAAAATCAAGACAAAA
1 AA-TT-TAAAAT-AAAATAATT
46077920 AATTTAAAATAAAATAATT
1 AATTTAAAATAAAATAATT
46077939 AATT
1 AATT
46077943 AACTATCATT
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
19 11 0.32
20 8 0.24
21 8 0.24
22 7 0.21
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (19 bp):
AATTTAAAATAAAATAATT
Found at i:46077925 original size:22 final size:22
Alignment explanation
Indices: 46077864--46077925 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 22
46077854 GATAGAATAG
*
46077864 AATCAAGACAGAAAAAATT-TAA
1 AATCAAGACA-AAAAATTTATAA
* * **
46077886 AAT-AAAATAATTAATTTATAA
1 AATCAAGACAAAAAATTTATAA
46077907 AATCAAGACAAAAAATTTA
1 AATCAAGACAAAAAATTTA
46077926 AAATAAAATA
Statistics
Matches: 29, Mismatches: 9, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
20 5 0.17
21 10 0.34
22 14 0.48
ACGTcount: A:0.63, C:0.06, G:0.05, T:0.26
Consensus pattern (22 bp):
AATCAAGACAAAAAATTTATAA
Found at i:46083723 original size:47 final size:47
Alignment explanation
Indices: 46083650--46083759 Score: 159
Period size: 47 Copynumber: 2.4 Consensus size: 47
46083640 ATACATTGAG
*
46083650 TTGGCTTCGGGCCA-GATATAGCACTTCGGGTGCAAGATATACTAAT
1 TTGGCTTCGGGCCATGATATAGCACTTCAGGTGCAAGATATACTAAT
* * *
46083696 TTGGCTTCAGGCCATGATATAGCACTTCAGGTGCAAGTTATACTGAT
1 TTGGCTTCGGGCCATGATATAGCACTTCAGGTGCAAGATATACTAAT
**
46083743 TTGTTTTCGGGCCATGA
1 TTGGCTTCGGGCCATGA
46083760 ATATTGGCTG
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
46 13 0.23
47 43 0.77
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (47 bp):
TTGGCTTCGGGCCATGATATAGCACTTCAGGTGCAAGATATACTAAT
Found at i:46085885 original size:49 final size:49
Alignment explanation
Indices: 46085806--46086200 Score: 430
Period size: 49 Copynumber: 7.9 Consensus size: 49
46085796 GCTATTGTGA
*
46085806 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * **
46085855 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTCATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* ** * * * **
46085905 CGCTCATGTGTGTATTACTAAGTGCAGGCTACTACGTGTATCAAATGGTT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* ** *
46085955 AGGTCACGTGTGTAGTACTAAGTATAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
46086005 GGTCGCATGTTTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
* * * **
46086056 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
46086105 ATGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
46086155 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
46086201 GCTTCGGCTA
Statistics
Matches: 282, Mismatches: 59, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
49 122 0.43
50 86 0.30
51 74 0.26
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:46086076 original size:150 final size:150
Alignment explanation
Indices: 46085805--46086206 Score: 687
Period size: 150 Copynumber: 2.7 Consensus size: 150
46085795 AGCTATTGTG
*
46085805 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
* * * *
46085870 ACTAAGTGCAGGCTACTATGCGTACCTCATAACTTCGCTCATGTGTGTATTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
46085935 ACTACGTGTATCAAATGGTT
131 ACTACGTGTATCAAATGGTT
** *
46085955 AGGTCACGTGTGTAGTACTAAGTATAGGCTACTACGTGTACCGGATAATTGGTCGCATGTTTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
*
46086020 ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTTGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
*
46086085 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAAATGGTT
*
46086105 ATGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
* *
46086170 ACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTCG
66 ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCG
46086207 GCTACAAGTG
Statistics
Matches: 235, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
150 235 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (150 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
ACTACGTGTATCAAATGGTT
Found at i:46086092 original size:28 final size:28
Alignment explanation
Indices: 46086060--46086143 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
46086050 AACTTTGATC
46086060 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * * *
46086088 ACGTGTATCAG-A-T-GGT-TATG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
46086110 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
46086138 ACGTGT
1 ACGTGT
46086144 ACCGGATAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 16
0.62 0.12 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 3 0.08
25 4 0.10
26 3 0.08
27 2 0.05
28 14 0.35
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:46098054 original size:47 final size:47
Alignment explanation
Indices: 46098001--46098435 Score: 728
Period size: 47 Copynumber: 9.3 Consensus size: 47
46097991 ACAAGATATG
*
46098001 TATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
46098048 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
46098095 TATAGGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
46098142 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
46098189 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
46098236 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
46098282 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
46098329 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
46098376 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
46098423 TAAATGTGATAAG
1 TATATGTGATAAG
46098436 TCCCGAAGGG
Statistics
Matches: 362, Mismatches: 25, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 43 0.12
47 319 0.88
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:46098173 original size:22 final size:22
Alignment explanation
Indices: 46098145--46098220 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
46098135 AAGTGTATAT
46098145 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
46098167 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
46098191 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
46098214 ATGTGAT
1 ATGTGAT
46098221 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:46098416 original size:234 final size:235
Alignment explanation
Indices: 46098001--46098435 Score: 764
Period size: 234 Copynumber: 1.9 Consensus size: 235
46097991 ACAAGATATG
46098001 TATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
1 TATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* *
46098066 ATGGCCAATGTGATGAATGTGAAAGTGTATATAGGTGACAAGGCCTAATGGCCAATGTGATGAAT
66 ATGGCCAATGTGATGAATGTGAAAGTGTATATAGGAGACAAGACCTAATGGCCAATGTGATGAAT
*
46098131 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGT
131 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGT
46098196 GATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
196 GATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
46098236 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCGA
1 TATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* * * *
46098300 ATGGCCAATGTGATGAATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGAT
66 ATGGCCAATGTGATGAATGTGAAAGTGTATATAGGAGACAAGACCTAATGGCCAATGTGATGAAT
* *
46098365 GTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGT
131 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGT
46098430 GATAAG
196 GATAAG
46098436 TCCCGAAGGG
Statistics
Matches: 189, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
234 152 0.80
235 37 0.20
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (235 bp):
TATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAAAGTGTATATAGGAGACAAGACCTAATGGCCAATGTGATGAAT
GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGT
GATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:46099277 original size:135 final size:135
Alignment explanation
Indices: 46099035--46099306 Score: 508
Period size: 135 Copynumber: 2.0 Consensus size: 135
46099025 AATTGGTGAA
46099035 GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATGTGCTTTGGAAATATTCGACCA
1 GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATGTGCTTTGGAAATATTCGACCA
46099100 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
66 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
46099165 AGTTC
131 AGTTC
* *
46099170 GAATGTTCTTACCATGTGAATCCATCTTCAATTGATGAAGAATGTGCTTTGGAAATATTTGACCA
1 GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATGTGCTTTGGAAATATTCGACCA
* *
46099235 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGTGTTTATTGATATTAT
66 TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
46099300 AGTTC
131 AGTTC
46099305 GA
1 GA
46099307 GATGAAGCTC
Statistics
Matches: 133, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
135 133 1.00
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (135 bp):
GAATGTGCTTACCATGTGAATCCATCTTCAATTGATGAAGAATGTGCTTTGGAAATATTCGACCA
TCTAGATCACTATTGTACGAAAGTATATATATGTGAGAGTTAAGTGATGCGTTTATTAATATTAT
AGTTC
Found at i:46101318 original size:15 final size:15
Alignment explanation
Indices: 46101296--46101333 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
46101286 AACTAAACCC
46101296 CAAA-AACCTGAAAA
1 CAAAGAACCTGAAAA
46101310 CAAAGAACCTGAAAA
1 CAAAGAACCTGAAAA
46101325 CAAAGAACC
1 CAAAGAACC
46101334 CTCAAAACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.61, C:0.24, G:0.11, T:0.05
Consensus pattern (15 bp):
CAAAGAACCTGAAAA
Found at i:46103063 original size:40 final size:40
Alignment explanation
Indices: 46103019--46103249 Score: 358
Period size: 40 Copynumber: 5.8 Consensus size: 40
46103009 GGATATAGCT
* * *
46103019 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
46103059 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
46103099 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
46103139 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
** *
46103179 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
46103218 ACTAGCACAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
46103250 TTATCATCCA
Statistics
Matches: 179, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 34 0.19
40 143 0.80
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:46108913 original size:27 final size:26
Alignment explanation
Indices: 46108883--46108933 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
46108873 TTTAAAAAGT
* *
46108883 TAATGGTCAAATTTAACTTAAAAATAA
1 TAATGGCCAAA-TTAACTAAAAAATAA
*
46108910 TAATTGCCAAATTAACTAAAAAAT
1 TAATGGCCAAATTAACTAAAAAAT
46108934 GTAAACATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.31
Consensus pattern (26 bp):
TAATGGCCAAATTAACTAAAAAATAA
Found at i:46109066 original size:25 final size:25
Alignment explanation
Indices: 46109004--46109052 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
46108994 AAGGCATGAG
46109004 AACAAATTATATACATAAAGATGTA
1 AACAAATTATATACATAAAGATGTA
46109029 AACAAATTATATACATAAAGATGT
1 AACAAATTATATACATAAAGATGT
46109053 TTTAAATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.55, C:0.08, G:0.08, T:0.29
Consensus pattern (25 bp):
AACAAATTATATACATAAAGATGTA
Found at i:46109950 original size:14 final size:14
Alignment explanation
Indices: 46109933--46109966 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
46109923 TAAAGTTCAG
46109933 GGTCCAAGGTCTAA
1 GGTCCAAGGTCTAA
* *
46109947 GGTCCAAGGTTTAG
1 GGTCCAAGGTCTAA
46109961 GGTCCA
1 GGTCCA
46109967 TAGTACAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (14 bp):
GGTCCAAGGTCTAA
Found at i:46109962 original size:28 final size:27
Alignment explanation
Indices: 46109911--46109966 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
46109901 TGCAAGGTGT
*
46109911 AAGGTCTAGGTCTAAAGTTCAGGGTCC
1 AAGGTCTAGGTCCAAAGTTCAGGGTCC
* *
46109938 AAGGTCTAAGGTCCAAGGTTTAGGGTCC
1 AAGGTCT-AGGTCCAAAGTTCAGGGTCC
46109966 A
1 A
46109967 TAGTACAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (27 bp):
AAGGTCTAGGTCCAAAGTTCAGGGTCC
Found at i:46110027 original size:21 final size:21
Alignment explanation
Indices: 46109977--46110027 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
46109967 TAGTACAAGA
*
46109977 TCAAGGATTCAAGGTCCAGTGT
1 TCAAGG-TTCAAGGTCCAGAGT
* *
46109999 TCAGGGTTCAAGGTCTAGAGT
1 TCAAGGTTCAAGGTCCAGAGT
*
46110020 TGAAGGTT
1 TCAAGGTT
46110028 TAGGGATTAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.29
Consensus pattern (21 bp):
TCAAGGTTCAAGGTCCAGAGT
Found at i:46110640 original size:24 final size:25
Alignment explanation
Indices: 46110592--46110648 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
46110582 TAATATTAAA
46110592 ATATAAAATTAAATATTATATAATT
1 ATATAAAATTAAATATTATATAATT
*
46110617 ATATAATATT-AATATTCATA-AATT
1 ATATAAAATTAAATATT-ATATAATT
*
46110641 ATACAAAA
1 ATATAAAA
46110649 CTTATCATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 16 0.57
25 12 0.43
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (25 bp):
ATATAAAATTAAATATTATATAATT
Found at i:46114740 original size:26 final size:26
Alignment explanation
Indices: 46114711--46114764 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
46114701 ACGAGAAGGA
46114711 AGATGGGCCAACTAATGTGGACCAAC
1 AGATGGGCCAACTAATGTGGACCAAC
*
46114737 AGATGGGCCAACTAATGTGGACCGAC
1 AGATGGGCCAACTAATGTGGACCAAC
46114763 AG
1 AG
46114765 TTTGTGAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.33, C:0.22, G:0.30, T:0.15
Consensus pattern (26 bp):
AGATGGGCCAACTAATGTGGACCAAC
Found at i:46117738 original size:15 final size:16
Alignment explanation
Indices: 46117720--46117749 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46117710 ATGGAAAGTA
46117720 TGGTAT-ATGAAATAT
1 TGGTATAATGAAATAT
46117735 TGGTATAATGAAATA
1 TGGTATAATGAAATA
46117750 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (16 bp):
TGGTATAATGAAATAT
Found at i:46117810 original size:2 final size:2
Alignment explanation
Indices: 46117803--46117827 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
46117793 TCATGACATG
46117803 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
46117828 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:46122648 original size:15 final size:15
Alignment explanation
Indices: 46122628--46122657 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
46122618 CAAACCGACA
46122628 AGGATGATTTTCAAT
1 AGGATGATTTTCAAT
46122643 AGGATGATTTTCAAT
1 AGGATGATTTTCAAT
46122658 TGCAATTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (15 bp):
AGGATGATTTTCAAT
Found at i:46126604 original size:37 final size:37
Alignment explanation
Indices: 46126554--46126644 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
46126544 TTATTACGAA
46126554 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
46126591 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
46126628 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
46126645 TTTCCAAGTT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 47 0.90
38 5 0.10
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:46126739 original size:48 final size:48
Alignment explanation
Indices: 46126684--46127026 Score: 598
Period size: 48 Copynumber: 7.2 Consensus size: 48
46126674 TGTTACAACA
* *
46126684 TTCACATTAGCCATTCGGCTTTACCACACATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
46126732 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
46126780 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT-T
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
46126827 TTCACATTAGCCCTTTGGCTTTACCACATATACACATCACACATATTT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
46126875 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
46126923 TTCACATTAGCCCTTCGGCTTTACCACATATACACATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
46126971 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
46127019 TTCACATT
1 TTCACATT
46127027 CATCACATCG
Statistics
Matches: 280, Mismatches: 14, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
47 44 0.16
48 236 0.84
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:46127058 original size:42 final size:43
Alignment explanation
Indices: 46127010--46127109 Score: 130
Period size: 49 Copynumber: 2.2 Consensus size: 43
46127000 ATACATATCA
*
46127010 CACATATGT-TTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATCTTCACATTCATCACATCGGCCATTAGGCCTTAT
46127052 CACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CAC--ATATAT----CTTCACATTCATCACATCGGCCATTAGGCCTTAT
46127101 CACATATAT
1 CACATATAT
46127110 ACATCTCCGA
Statistics
Matches: 50, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
42 3 0.06
44 5 0.10
47 6 0.12
49 36 0.72
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (43 bp):
CACATATATCTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:46129461 original size:50 final size:51
Alignment explanation
Indices: 46129395--46129513 Score: 170
Period size: 50 Copynumber: 2.4 Consensus size: 51
46129385 GGGCTGTCAC
*
46129395 AGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAGTGA-AAGTGATA
1 AGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATGACAAGTGATA
* * *
46129445 AGTGATATCTTTGGCTACACTTATCTGATCAAGGACAAATGACAAGTGGA-A
1 AGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATGACAAGT-GATA
*
46129496 AGTGGTAGCTTCGGCTAC
1 AGTGATAGCTTCGGCTAC
46129514 CTGATCAGTG
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
50 38 0.63
51 20 0.33
52 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27
Consensus pattern (51 bp):
AGTGATAGCTTCGGCTACACTTATCTGATCAAAGACAAATGACAAGTGATA
Found at i:46129532 original size:31 final size:31
Alignment explanation
Indices: 46129489--46129618 Score: 188
Period size: 31 Copynumber: 4.2 Consensus size: 31
46129479 ACAAATGACA
*
46129489 AGTGGAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
46129520 AGTGAAAAGTGGTAGCTTCTGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
46129551 AGTGAAAAGTGGTAGCTCCAGATACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
46129582 AGTGAAAAATGGTAGCTTTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
46129613 AGTGAA
1 AGTGAA
46129619 TAGTTGTAAC
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 87 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:46130105 original size:19 final size:19
Alignment explanation
Indices: 46130069--46130107 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
46130059 TTTTCATCAT
* *
46130069 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
46130088 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
46130107 A
1 A
46130108 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:46130611 original size:55 final size:56
Alignment explanation
Indices: 46130546--46130660 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
46130536 AGCATGGCTG
* * *
46130546 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* ** *
46130602 CCAGA-ACAGATATACGTGGTAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
46130657 CCAG
1 CCAG
46130661 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.58
56 20 0.40
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:46130657 original size:28 final size:27
Alignment explanation
Indices: 46130571--46130660 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
46130561 GTGACAGAGT
*
46130571 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** * *
46130600 CACCAGAACAGAT-ATACGTGGTAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
46130627 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
46130655 CACCAG
1 CACCAG
46130661 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:46130813 original size:28 final size:28
Alignment explanation
Indices: 46130766--46130830 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
46130756 AAATTAACCC
*
46130766 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
46130794 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
46130822 TAGGGGTAT
1 TAGGGGTAT
46130831 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:46134344 original size:40 final size:40
Alignment explanation
Indices: 46134300--46134422 Score: 133
Period size: 40 Copynumber: 3.1 Consensus size: 40
46134290 GGGCTAAGTG
* *
46134300 ACTAAATCCGAAATAAGATCCGACGGCATACGTGCGAGTT
1 ACTAAATCCGAAATAAGATCCGAAGGCATTCGTGCGAGTT
* * * *
46134340 ACTAAATCC-AGACTAAGATCCGAAGGCTTTCGAGCGAGCT
1 ACTAAATCCGA-AATAAGATCCGAAGGCATTCGTGCGAGTT
***
46134380 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTT
1 ACTAAATCCGAAATAAGAT-CCGAAGGCATTCGTGCGAGTT
46134420 ACT
1 ACT
46134423 GTAACCGGGC
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
39 2 0.03
40 66 0.97
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.22
Consensus pattern (40 bp):
ACTAAATCCGAAATAAGATCCGAAGGCATTCGTGCGAGTT
Found at i:46134431 original size:40 final size:40
Alignment explanation
Indices: 46134265--46134449 Score: 128
Period size: 40 Copynumber: 4.6 Consensus size: 40
46134255 TTCGAATGAT
* * *
46134265 ATCCGGGCTAAGTCCCGAAGGC-TTTGGGCTAAG-TGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGAGC-GAGCT-ACTAA
*** * * * *
46134305 ATCCGAAATAAGAT-CCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGAGCGAGCTACTAA
* * *
46134345 ATCCAGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGAGCGAGCTACTAA
* * * *
46134385 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACT-AA
*
46134426 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
46134450 TGAATGTGTA
Statistics
Matches: 115, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
39 1 0.01
40 106 0.92
41 8 0.07
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACTAA
Found at i:46135905 original size:49 final size:45
Alignment explanation
Indices: 46135882--46135999 Score: 124
Period size: 42 Copynumber: 2.8 Consensus size: 45
46135872 GATATGTGAT
*
46135882 TATGTGTAAGACCATAGCTGGGCTATGACATCGATA--T-ATAAA
1 TATGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATAAA
46135924 TATGTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTG---AA
1 TATGTGTAAGACCATAGCTGGGCTATGGCATCGA-TATGTGATAAA
* * * **
46135966 GATGTGTAAGAACATAGTTGAACTATGGCATCGA
1 TATGTGTAAGACCATAGCTGGGCTATGGCATCGA
46136000 GAAAACGAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.02
42 62 0.95
43 1 0.02
44 1 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.29
Consensus pattern (45 bp):
TATGTGTAAGACCATAGCTGGGCTATGGCATCGATATGTGATAAA
Found at i:46135931 original size:42 final size:42
Alignment explanation
Indices: 46135882--46135982 Score: 141
Period size: 42 Copynumber: 2.4 Consensus size: 42
46135872 GATATGTGAT
46135882 TATGTGTAAGACCATAGCTGGGCTATGACATCGA-TATATAAA
1 TATGTGTAAGACCATAGCTGGGCTATGACATC-ATTATATAAA
* * *
46135924 TATGTGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAA
1 TATGTGTAAGACCATAGCTGGGCTATGACATCATTATATAAA
* *
46135966 GATGTGTAAGAACATAG
1 TATGTGTAAGACCATAG
46135983 TTGAACTATG
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
41 1 0.02
42 52 0.98
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.29
Consensus pattern (42 bp):
TATGTGTAAGACCATAGCTGGGCTATGACATCATTATATAAA
Found at i:46140337 original size:43 final size:42
Alignment explanation
Indices: 46140290--46140387 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
46140280 CCCAGACGTG
* * *
46140290 GTCTTACATGTAATCAAATATCTATGCCACTATCCCAGACAGA
1 GTCTTACATGTAATCAAATA-CGATGCCAATATCACAGACAGA
* * *
46140333 GTCTTACATGAAATCAAATACGATGCCAATGTCACAGACATA
1 GTCTTACATGTAATCAAATACGATGCCAATATCACAGACAGA
*
46140375 GTCTTGCATGTAA
1 GTCTTACATGTAA
46140388 ATCTCAAATC
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 28 0.60
43 19 0.40
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (42 bp):
GTCTTACATGTAATCAAATACGATGCCAATATCACAGACAGA
Found at i:46140390 original size:43 final size:43
Alignment explanation
Indices: 46140265--46140390 Score: 148
Period size: 43 Copynumber: 3.0 Consensus size: 43
46140255 TGAAAAGCTC
* *
46140265 ATACAATGCCAATGTCCCAGACGTGGTCTTACATGT-AATCAA
1 ATACAATGCCAATGTCCCAGACATAGTCTTACATGTAAATCAA
* * * *
46140307 ATATCTATGCCACTATCCCAGACAGAGTCTTACATG-AAATCAA
1 ATA-CAATGCCAATGTCCCAGACATAGTCTTACATGTAAATCAA
* * *
46140350 ATACGATGCCAATGTCACAGACATAGTCTTGCATGTAAATC
1 ATACAATGCCAATGTCCCAGACATAGTCTTACATGTAAATC
46140391 TCAAATCGAA
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
42 29 0.42
43 40 0.58
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACATAGTCTTACATGTAAATCAA
Found at i:46140415 original size:44 final size:42
Alignment explanation
Indices: 46140290--46140415 Score: 103
Period size: 42 Copynumber: 2.9 Consensus size: 42
46140280 CCCAGACGTG
* * * * *
46140290 GTCTTACATGTAATCAAATATCTATGCC-ACTATCCCAGACAGA
1 GTCTTACATGAAATCAAATA-CGAAGCCAAC-GTCACAGACAGA
* * *
46140333 GTCTTACATGAAATCAAATACGATGCCAATGTCACAGACATA
1 GTCTTACATGAAATCAAATACGAAGCCAACGTCACAGACAGA
* *
46140375 GTCTTGCATGTAAATCTCAAAT-CGAAGCCAACGTCTCAGAC
1 GTCTTACATG-AAA--TCAAATACGAAGCCAACGTCACAGAC
46140416 GTGGTCTTAC
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
42 24 0.35
43 23 0.33
44 16 0.23
45 6 0.09
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (42 bp):
GTCTTACATGAAATCAAATACGAAGCCAACGTCACAGACAGA
Found at i:46142100 original size:61 final size:61
Alignment explanation
Indices: 46142005--46142133 Score: 213
Period size: 61 Copynumber: 2.1 Consensus size: 61
46141995 TAGTACAACA
* * * *
46142005 TGGTGTGTAGGGATGGGTGGGTCGATTTTATCCCTACATAGTGTGTAGGGTTGGATGGCGT
1 TGGTGTGCAAGGATGGGTGGGTCGATTTTATCCCTACATAGTGTGTAGGGTTGGACGGAGT
*
46142066 TGGTGTGCAAGGATGGGTGGGTCGATTTTATCCCTACATGGTGTGTAGGGTTGGACGGAGT
1 TGGTGTGCAAGGATGGGTGGGTCGATTTTATCCCTACATAGTGTGTAGGGTTGGACGGAGT
46142127 TGGTGTG
1 TGGTGTG
46142134 TAAAGGCTGG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.15, C:0.10, G:0.42, T:0.33
Consensus pattern (61 bp):
TGGTGTGCAAGGATGGGTGGGTCGATTTTATCCCTACATAGTGTGTAGGGTTGGACGGAGT
Found at i:46142146 original size:61 final size:61
Alignment explanation
Indices: 46142005--46142148 Score: 209
Period size: 61 Copynumber: 2.4 Consensus size: 61
46141995 TAGTACAACA
* * * *
46142005 TGGTGTGTAGGGATGGGTGGGTCGATTTTATCCCTACATAGTGTGTAGGGTTGGATGGCGT
1 TGGTGTGAAAGGATGGGTGGGTCGATTTTATCCCTACATAGTGTGTAGGGTTGGACGGAGT
* *
46142066 TGGTGTGCAAGGATGGGTGGGTCGATTTTATCCCTACATGGTGTGTAGGGTTGGACGGAGT
1 TGGTGTGAAAGGATGGGTGGGTCGATTTTATCCCTACATAGTGTGTAGGGTTGGACGGAGT
*
46142127 TGGTGTGTAAAGGCT-GGTGGGT
1 TGGTGTG-AAAGGATGGGTGGGT
46142149 AGGACTCTAT
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
61 70 0.93
62 5 0.07
ACGTcount: A:0.15, C:0.10, G:0.42, T:0.33
Consensus pattern (61 bp):
TGGTGTGAAAGGATGGGTGGGTCGATTTTATCCCTACATAGTGTGTAGGGTTGGACGGAGT
Found at i:46165441 original size:38 final size:38
Alignment explanation
Indices: 46165399--46165518 Score: 168
Period size: 38 Copynumber: 3.2 Consensus size: 38
46165389 ATGCTGGAAT
*
46165399 TATATCCGGGTTAAATCCTGTAGGCTTCGTGCTCGTAA
1 TATATCCGGGTTAAATCCCGTAGGCTTCGTGCTCGTAA
* *
46165437 TATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGTAGGCTTCGTGCTCGTAA
* * * * *
46165475 TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGTAGGCTTCGTGCTCGTAA
46165513 TATATC
1 TATATC
46165519 TGAGCTTAAG
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.24, T:0.33
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGTAGGCTTCGTGCTCGTAA
Found at i:46173498 original size:38 final size:38
Alignment explanation
Indices: 46173427--46173615 Score: 202
Period size: 38 Copynumber: 4.9 Consensus size: 38
46173417 ATTTGATGTG
* *
46173427 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
*
46173467 TATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
*
46173505 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * * *
46173543 TATCCGGGTTAACTCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * * *
46173581 TATCTGAGCTTAAAGTCCCGCAGGTTTTGTGCTGG
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGG
46173616 TGACTAGATT
Statistics
Matches: 130, Mismatches: 14, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
37 2 0.02
38 91 0.70
39 12 0.09
40 25 0.19
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:46173526 original size:76 final size:77
Alignment explanation
Indices: 46173427--46173604 Score: 225
Period size: 76 Copynumber: 2.3 Consensus size: 77
46173417 ATTTGATGTG
* * *
46173427 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGTAGGCT
1 TATCCGGG-TTAAAGTCCCGCAGGCT-TCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCC
*
46173491 TCGTGCTGGTAATA
64 TAGTGCTGGTAATA
* * *
46173505 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAACTCCCGCAGGCCTA
1 TATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTA
*
46173569 GTGCTGGTATTA
66 GTGCTGGTAATA
* *
46173581 TATCTGAGCTTAAAGTCCCGCAGG
1 TATCCG-GGTTAAAGTCCCGCAGG
46173605 TTTTGTGCTG
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
75 1 0.01
76 58 0.67
77 11 0.13
78 17 0.20
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.29
Consensus pattern (77 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTCATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCCTA
GTGCTGGTAATA
Found at i:46177072 original size:14 final size:14
Alignment explanation
Indices: 46177053--46177091 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
46177043 AATTAGGTAA
46177053 ATAATATAAATGTT
1 ATAATATAAATGTT
46177067 ATAATATAACAT-TT
1 ATAATATAA-ATGTT
46177081 ATAATA-AAATG
1 ATAATATAAATG
46177092 ATGTTCATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 2 0.09
13 2 0.09
14 17 0.74
15 2 0.09
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (14 bp):
ATAATATAAATGTT
Found at i:46178823 original size:27 final size:28
Alignment explanation
Indices: 46178767--46178836 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
46178757 AAATTTGTAC
46178767 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
46178795 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
46178822 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
46178837 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:46186607 original size:27 final size:28
Alignment explanation
Indices: 46186551--46186620 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
46186541 AAATTTGTAC
46186551 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
46186579 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
46186606 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
46186621 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:46192016 original size:30 final size:30
Alignment explanation
Indices: 46191982--46192042 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
46191972 TCCTTAACTC
46191982 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
46192012 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
46192042 A
1 A
46192043 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:46196464 original size:30 final size:30
Alignment explanation
Indices: 46196430--46196490 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
46196420 TCCTTAACTC
46196430 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
46196460 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
46196490 A
1 A
46196491 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Done.