Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 155 of 425
Found at i:47130995 original size:40 final size:39
Alignment explanation
Indices: 47130958--47131181 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 39
47130948 GCTACTCGTT
*
47130958 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGTT-TAGTAACTCGCA
* *
47130998 CAGATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGG-TTTAGTAACTCGCA
*
47131038 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGG-TTTAGTAACTCGCA
* * *
47131078 CGAATGCCTTCGGATCTTAGTCCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGTTTAGTAACTCGCA
* * * * *
47131117 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGG-TTTAGTAAC-TCGCA
47131158 CAAA-GCCTTCGGGA-CTTAGCCCGG
1 CAAATGCCTTC-GGATCTTAGCCCGG
47131182 ACATCATTCG
Statistics
Matches: 165, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 41 0.25
40 112 0.68
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGATCTTAGCCCGGTTTAGTAACTCGCA
Found at i:47131134 original size:79 final size:79
Alignment explanation
Indices: 47130958--47131182 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 79
47130948 GCTACTCGTT
* * *
47130958 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCC
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACA-ATGCCTTCGGGACTTAGCCC
47131021 GGATTTAGTAACTCGCA
63 GGATTTAGTAACTCGCA
*
47131038 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACGAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAGCCCG
47131102 GA-TTAGTAACTCGCA
64 GATTTAGTAACTCGCA
* * * * *
47131117 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCGG
47131182 A
65 A
47131183 CATCATTCGA
Statistics
Matches: 129, Mismatches: 10, Indels: 13
0.85 0.07 0.09
Matches are distributed among these distances:
79 69 0.53
80 57 0.44
81 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:47131142 original size:119 final size:120
Alignment explanation
Indices: 47130960--47131182 Score: 278
Period size: 119 Copynumber: 1.9 Consensus size: 120
47130950 TACTCGTTCA
*
47130960 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGAT
* * *
47131025 TTAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACG
66 ATAGTAACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACG
* * **
47131080 AATGCCTTC-GGATCTTAGTCCGGAT-TAGTAACTCGCAC-GAATGCCTTC-GGATCTTAGTCCG
1 AATGCCTTCGGGA-CATAGCCCGGATATAGTAACTCGCACAG-ATGCCTTCGGGA-CTTAACCCG
*
47131141 GATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
47131183 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
118 4 0.04
119 56 0.63
120 29 0.33
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
Found at i:47139049 original size:40 final size:40
Alignment explanation
Indices: 47139012--47139197 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
47139002 GCTACTCGTT
*
47139012 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
47139052 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
47139092 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
47139132 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
47139173 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47139198 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:47144561 original size:40 final size:40
Alignment explanation
Indices: 47144467--47144574 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 40
47144457 CTGGAAATTA
* * **
47144467 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGCTC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCACTC
*
47144507 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTC
47144546 TATCCGGGCTAAGA-CC-AAGGCATTCGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGC
47144575 ACACGGGTTA
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
38 16 0.26
39 32 0.52
40 13 0.21
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTC
Found at i:47152525 original size:29 final size:29
Alignment explanation
Indices: 47152440--47152540 Score: 136
Period size: 29 Copynumber: 3.6 Consensus size: 29
47152430 CCTCCGAGCT
** * *
47152440 CGCACACCCAGTGCCGTAT-TTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
47152468 TGCACACTTAGTGCC--ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
47152495 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
47152524 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
47152541 CTCGTCACCG
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
26 2 0.03
27 22 0.34
28 12 0.18
29 29 0.45
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:47159416 original size:40 final size:39
Alignment explanation
Indices: 47159372--47159564 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
47159362 GTTCAAAACA
* * ** * *
47159372 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
47159412 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
47159452 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
47159491 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
47159530 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
47159565 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:47159483 original size:39 final size:39
Alignment explanation
Indices: 47159402--47159564 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
47159392 TATGGTAACC
* *
47159402 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
47159442 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
47159481 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
47159520 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
47159559 CGCACA
1 CGCACA
47159565 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:47172370 original size:18 final size:19
Alignment explanation
Indices: 47172339--47172379 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
47172329 AATTTCATAT
47172339 TTTTAATATAATTTAATTA
1 TTTTAATATAATTTAATTA
*
47172358 TTTT-ATATTATTTAATTA
1 TTTTAATATAATTTAATTA
47172376 TTTT
1 TTTT
47172380 TGACAAGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTAATATAATTTAATTA
Found at i:47183686 original size:29 final size:29
Alignment explanation
Indices: 47183653--47183755 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
47183643 GTGACGAGAT
47183653 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
47183682 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** *
47183711 TGGCGCTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
**
47183740 TGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
47183756 AGTTCGGAGG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.25, C:0.15, G:0.34, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:47191563 original size:29 final size:29
Alignment explanation
Indices: 47191530--47191632 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
47191520 GTGACGAGAT
47191530 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
47191559 TGGCACTAAGTGTGCGTGCTGGAAATATT
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
47191588 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
47191617 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
47191633 AGTTCGGAGG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:47209253 original size:40 final size:40
Alignment explanation
Indices: 47209208--47209374 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
47209198 CGGAATATAA
*
47209208 CCGGATATAATCACGCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
47209248 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTCGCACAAATGCCTTCGGGTCTTAGC
** * ** *
47209288 CCGGATATAGCCACTAGCACATTTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTCGCACAAATGCCTTCGGGTCTTAGC
** * * *
47209328 CCGGATATAATTTC-CAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTC-GCACAAATGCCTTCGGGTCTTAGC
47209367 CCGGATAT
1 CCGGATAT
47209375 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 13 0.12
40 91 0.88
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:47219584 original size:20 final size:20
Alignment explanation
Indices: 47219561--47219609 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
47219551 GAGGGGCCGT
47219561 AGTGCAAACAGAGGCACCAA
1 AGTGCAAACAGAGGCACCAA
*
47219581 AGTGAAAACAGAGGCACCAA
1 AGTGCAAACAGAGGCACCAA
*
47219601 AATGCAAAC
1 AGTGCAAAC
47219610 TTGTAGAAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.49, C:0.22, G:0.22, T:0.06
Consensus pattern (20 bp):
AGTGCAAACAGAGGCACCAA
Found at i:47221982 original size:40 final size:38
Alignment explanation
Indices: 47221897--47222045 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 38
47221887 AATTGAATGA
* * * **
47221897 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC--GAGATGC
* *
47221937 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-GC
*
47221975 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATGC
*
47222015 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
47222046 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 5 0.05
40 55 0.60
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATGC
Found at i:47229961 original size:40 final size:38
Alignment explanation
Indices: 47229876--47230024 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 38
47229866 AATTGAATGA
* * * **
47229876 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC--GAGATGC
* *
47229916 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-GC
*
47229954 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATGC
*
47229994 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
47230025 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 5 0.05
40 55 0.60
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATGC
Found at i:47232038 original size:27 final size:27
Alignment explanation
Indices: 47232008--47232202 Score: 248
Period size: 27 Copynumber: 7.2 Consensus size: 27
47231998 CGATTTACCA
47232008 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
47232035 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
47232062 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* **
47232089 AATTACTTAAATACCCCTGTAAAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
47232116 AATTA-TCGAAACACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * *
47232143 AAATACCGAAATATCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
47232170 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
47232197 AATTAC
1 AATTAC
47232203 CATTTTGCCC
Statistics
Matches: 145, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 144 0.99
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:47232622 original size:22 final size:22
Alignment explanation
Indices: 47232592--47232644 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
47232582 AATTATTCTG
*
47232592 ATTATGGCTTTGCGCCAACCTA
1 ATTATGGCTCTGCGCCAACCTA
*
47232614 CA-TATGGCTCTGTGCCAACCTA
1 -ATTATGGCTCTGCGCCAACCTA
47232636 ATTATGGCT
1 ATTATGGCT
47232645 GCATTCCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 1 0.04
22 25 0.93
23 1 0.04
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (22 bp):
ATTATGGCTCTGCGCCAACCTA
Found at i:47232842 original size:27 final size:26
Alignment explanation
Indices: 47232812--47232894 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
47232802 ATTCTGTTAA
* * *
47232812 GTGGCTTTGCCATATTATCTGTTTCTG
1 GTGGCTATGCCAAAATATCTGTTT-TG
47232839 GTGGCTATGCCACAAATATCTGTTTTG
1 GTGGCTATGCCA-AAATATCTGTTTTG
* *
47232866 GTGGCTCTGCCACAATATCTGTATTTG
1 GTGGCTATGCCAAAATATCTGT-TTTG
47232893 GT
1 GT
47232895 AACTCTGTCA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 9 0.18
27 30 0.61
28 10 0.20
ACGTcount: A:0.17, C:0.19, G:0.23, T:0.41
Consensus pattern (26 bp):
GTGGCTATGCCAAAATATCTGTTTTG
Found at i:47232900 original size:27 final size:26
Alignment explanation
Indices: 47232827--47232912 Score: 91
Period size: 27 Copynumber: 3.2 Consensus size: 26
47232817 TTTGCCATAT
** *
47232827 TATCTGTTTCTGGTGGCTATGCCACAAA
1 TATCTGTTT-TGGTAACTCTGCCAC-AA
**
47232855 TATCTGTTTTGGTGGCTCTGCCACAA
1 TATCTGTTTTGGTAACTCTGCCACAA
*
47232881 TATCTGTATTTGGTAACTCTGTCACAA
1 TATCTGT-TTTGGTAACTCTGCCACAA
47232908 TATCT
1 TATCT
47232913 ATTCTGGCAG
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 9 0.17
27 35 0.66
28 9 0.17
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.40
Consensus pattern (26 bp):
TATCTGTTTTGGTAACTCTGCCACAA
Found at i:47233046 original size:6 final size:6
Alignment explanation
Indices: 47233037--47233167 Score: 92
Period size: 6 Copynumber: 21.3 Consensus size: 6
47233027 TTGCATTCAC
* * * *
47233037 ATTCTG ATTCTG ATTCT- ATTATCTA ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG A-T-TCTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
47233087 ATTCTG ATTCTG ATTCTG ATTCTA ATTCTG ATTCTG -TCACCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
*
47233136 ATTCTG ATTCTC ATT-TCG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCT-G ATTCTG A-TTCTG AT
47233168 AATGTTTCTT
Statistics
Matches: 99, Mismatches: 13, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
5 5 0.05
6 80 0.81
7 11 0.11
8 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:47233072 original size:31 final size:30
Alignment explanation
Indices: 47233037--47233152 Score: 94
Period size: 31 Copynumber: 3.7 Consensus size: 30
47233027 TTGCATTCAC
47233037 ATTCTGATTCTGATTCTATTATCTAATACTG
1 ATTCTGATTCTGATTCTATT-TCTAATACTG
* * * *
47233068 ATTCTGATTCTG-TCACCTAATTCTGATTCTG
1 ATTCTGATTCTGAT--TCTATTTCTAATACTG
* *
47233099 ATTCTGATTCTAATTCTGA-TTCT-GTCACCTG
1 ATTCTGATTCTGATTCT-ATTTCTAAT-A-CTG
47233130 ATTCTGATTCTGATTCTCATTTC
1 ATTCTGATTCTGATTCT-ATTTC
47233153 GATTCTAGTT
Statistics
Matches: 68, Mismatches: 10, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
29 1 0.01
30 7 0.10
31 52 0.76
32 8 0.12
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTATTTCTAATACTG
Found at i:47233139 original size:25 final size:25
Alignment explanation
Indices: 47233037--47233146 Score: 117
Period size: 25 Copynumber: 4.7 Consensus size: 25
47233027 TTGCATTCAC
* * *
47233037 ATTCTGATTCTGATTCTATTATCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
47233062 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
47233087 ATTCTGATTCTGATTCTG-------
1 ATTCTGATTCTGATTCTGTCACCTA
* *
47233105 ATTCTAATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
47233130 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
47233147 CATTTCGATT
Statistics
Matches: 71, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
18 17 0.24
25 54 0.76
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:47233165 original size:43 final size:43
Alignment explanation
Indices: 47233040--47233158 Score: 152
Period size: 43 Copynumber: 2.7 Consensus size: 43
47233030 CATTCACATT
* *
47233040 CTGATTCTGATTCT-ATTATCTAATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGA-T-TCTCATTCTGATTCTGATTCTGTCAC
* * *
47233084 CTAATTCTGATTCTGATTCTGATTCTAATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTCATTCTGATTCTGATTCTGTCAC
47233127 CTGATTCTGATTCTGATTCTCATT-TCGATTCT
1 CTGATTCTGATTCTGATTCTCATTCT-GATTCT
47233159 AGTTCTGATA
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
42 1 0.02
43 50 0.76
44 14 0.21
45 1 0.02
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.47
Consensus pattern (43 bp):
CTGATTCTGATTCTGATTCTCATTCTGATTCTGATTCTGTCAC
Found at i:47234441 original size:18 final size:18
Alignment explanation
Indices: 47234418--47234519 Score: 132
Period size: 18 Copynumber: 5.7 Consensus size: 18
47234408 TATACTTCAT
* *
47234418 ACAACATAGGATCGCATA
1 ACAACATAGGTTCACATA
*
47234436 ACAACATAGGATCACATA
1 ACAACATAGGTTCACATA
*
47234454 ACAACATAGGTTCGCATA
1 ACAACATAGGTTCACATA
* *
47234472 ATAACATAGGTTCATATA
1 ACAACATAGGTTCACATA
*
47234490 ATAACATAGGTTCACATA
1 ACAACATAGGTTCACATA
*
47234508 AAAACATAGGTT
1 ACAACATAGGTT
47234520 TCCACTAATA
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 76 1.00
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.24
Consensus pattern (18 bp):
ACAACATAGGTTCACATA
Found at i:47236612 original size:40 final size:40
Alignment explanation
Indices: 47236565--47236749 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
47236555 CTCGCACAAG
47236565 GCCTTCGGGTCTTAGCCCGGATAT-GATCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAG-TCACTAGCATAAAT
* * *
47236605 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
* * * * *
47236645 GCCTTCGGGTTTTGGCCCAGATATAGTAACTCGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
* * * *
47236685 GCCTTCGGATCTTAGTCCGGATATAGTCACTTAACATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCAC-TAGCATAAAT
*
47236726 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
47236750 CATTCGAATA
Statistics
Matches: 120, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
40 91 0.76
41 29 0.24
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
Found at i:47238924 original size:15 final size:15
Alignment explanation
Indices: 47238904--47238936 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
47238894 GCTTAAGATG
47238904 TAAATCAACCAAATC
1 TAAATCAACCAAATC
47238919 TAAATCAACCAAATC
1 TAAATCAACCAAATC
47238934 TAA
1 TAA
47238937 GCATGGGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.21
Consensus pattern (15 bp):
TAAATCAACCAAATC
Found at i:47240088 original size:14 final size:14
Alignment explanation
Indices: 47240069--47240107 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
47240059 ATATTTGACT
47240069 TGTTCTTAATTATG
1 TGTTCTTAATTATG
47240083 TGTTCTTAATTATG
1 TGTTCTTAATTATG
47240097 TGTTCTTAATT
1 TGTTCTTAATT
47240108 CTTGTTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:47246132 original size:27 final size:28
Alignment explanation
Indices: 47246102--47246191 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 28
47246092 TTTAGTTTAC
47246102 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
47246129 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
47246156 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
47246183 TAAAATTAC
1 TAAAATTAC
47246192 TAAAGTACCC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:47246169 original size:54 final size:54
Alignment explanation
Indices: 47246102--47246220 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
47246092 TTTAGTTTAC
* *
47246102 TAAAATTACCGAAATACCCTTAG-TTTGTAAAAATACTGAAA-TACCCTCGATTTG
1 TAAAATTACCGAAATA-CCTTAGACTTGTAAAAATACT-AAAGTACCCCCGATTTG
* * * *
47246156 TAAATTTACCGAAATACCTTCGACTTGTAAAATTACTAAAGTACCCCCGATTTA
1 TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTTG
*
47246210 CAAAATTACCG
1 TAAAATTACCG
47246221 TTTTACCCCT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
53 8 0.15
54 47 0.85
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (54 bp):
TAAAATTACCGAAATACCTTAGACTTGTAAAAATACTAAAGTACCCCCGATTTG
Found at i:47246200 original size:27 final size:26
Alignment explanation
Indices: 47246126--47246201 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
47246116 TACCCTTAGT
* *
47246126 TTGTAAAAATACTGAAATACCCTCGAT
1 TTGTAAAATTACT-AAATACCCTCGAC
* * *
47246153 TTGTAAATTTACCGAAATACCTTCGAC
1 TTGTAAAATTA-CTAAATACCCTCGAC
47246180 TTGTAAAATTACTAAAGTACCC
1 TTGTAAAATTACTAAA-TACCC
47246202 CCGATTTACA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 4 0.10
27 34 0.87
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (26 bp):
TTGTAAAATTACTAAATACCCTCGAC
Found at i:47246227 original size:27 final size:27
Alignment explanation
Indices: 47246197--47246487 Score: 365
Period size: 27 Copynumber: 10.8 Consensus size: 27
47246187 ATTACTAAAG
* *
47246197 TACCCCCGATTTACAAAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
47246224 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
47246251 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
47246278 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
*
47246305 TACCCCTAATTTACATAATTACCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
47246332 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* *
47246359 TA-CCCTCGACTTACAGAATTACCGTTT
1 TACCCCT-GATTTACATAATTACCGTTT
* * *
47246386 TACCCTTAATTTACATAATTACCATTT
1 TACCCCTGATTTACATAATTACCGTTT
*
47246413 TACCCCTGATTTACATAATTATCGTTT
1 TACCCCTGATTTACATAATTACCGTTT
* * *
47246440 TA-CCTTGATTTACAGAATTACTGTTT
1 TACCCCTGATTTACATAATTACCGTTT
*
47246466 TA-CCCTCGATTTACAAAATTAC
1 TACCCCT-GATTTACATAATTAC
47246488 TAAAATACCC
Statistics
Matches: 228, Mismatches: 31, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
26 33 0.14
27 188 0.82
28 7 0.03
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCCTGATTTACATAATTACCGTTT
Found at i:47246438 original size:81 final size:81
Alignment explanation
Indices: 47246197--47246487 Score: 469
Period size: 81 Copynumber: 3.6 Consensus size: 81
47246187 ATTACTAAAG
* * *
47246197 TACCCCCGATTTACAAAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
47246262 TACATAATTATCGTTT
66 TACATAATTATCGTTT
47246278 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
47246343 TACATAATTATCGTTT
66 TACATAATTATCGTTT
* *
47246359 TACCCTCGACTTACAGAATTACCGTTTTACCCTTAATTTACATAATTACCATTTTACCCCTGATT
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
47246424 TACATAATTATCGTTT
66 TACATAATTATCGTTT
* * * * *
47246440 TA-CCTTGATTTACAGAATTACTGTTTTA-CCCTCGATTTACAAAATTAC
1 TACCCTCGACTTACAGAATTACCGTTTTACCCCT-AATTTACATAATTAC
47246488 TAAAATACCC
Statistics
Matches: 198, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
79 3 0.02
80 36 0.18
81 159 0.80
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.40
Consensus pattern (81 bp):
TACCCTCGACTTACAGAATTACCGTTTTACCCCTAATTTACATAATTACCGTTTTACCCCTGATT
TACATAATTATCGTTT
Found at i:47246588 original size:27 final size:27
Alignment explanation
Indices: 47246558--47246622 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
47246548 ACCCCTATTA
47246558 GGTAAAGTGACCGT-AAAGCCCCTGTAG
1 GGTAAAGTGACCGTGAAA-CCCCTGTAG
* *
47246585 GGTAAAGTGACCGTGATACCCCTGTAT
1 GGTAAAGTGACCGTGAAACCCCTGTAG
*
47246612 GGTAAAATGAC
1 GGTAAAGTGAC
47246623 GAATATGCCC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 32 0.94
28 2 0.06
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (27 bp):
GGTAAAGTGACCGTGAAACCCCTGTAG
Found at i:47247810 original size:25 final size:25
Alignment explanation
Indices: 47247781--47247828 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
47247771 TTATAATATG
* * *
47247781 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
47247806 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
47247829 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:47247912 original size:11 final size:11
Alignment explanation
Indices: 47247876--47247931 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
47247866 TATGGTATGT
47247876 ATGATATGCAC
1 ATGATATGCAC
* *
47247887 ATGAAATG--T
1 ATGATATGCAC
47247896 ATGATATGCAC
1 ATGATATGCAC
*
47247907 ATGATATG--T
1 ATGATATGCAC
47247916 ATGATATGCAC
1 ATGATATGCAC
47247927 ATGAT
1 ATGAT
47247932 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:47247931 original size:20 final size:20
Alignment explanation
Indices: 47247871--47247931 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
47247861 ATAAATATGG
47247871 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
47247891 AATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
47247911 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
47247931 T
1 T
47247932 GTAATCATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:47248008 original size:24 final size:24
Alignment explanation
Indices: 47247981--47248124 Score: 218
Period size: 24 Copynumber: 6.0 Consensus size: 24
47247971 GAGGAAGTGA
47247981 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
47248005 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
47248029 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
47248053 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
47248077 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
47248101 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
47248125 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
24 101 0.90
25 11 0.10
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:47248351 original size:31 final size:31
Alignment explanation
Indices: 47248316--47248379 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
47248306 AGTTTACAGT
47248316 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
47248347 AAAGGCTTCGGCCTAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
47248378 AA
1 AA
47248380 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:47256669 original size:53 final size:53
Alignment explanation
Indices: 47256589--47256693 Score: 192
Period size: 53 Copynumber: 2.0 Consensus size: 53
47256579 TGAGGGTTCG
* *
47256589 AACCCTTGCTATTATATAAGCGGTCATCGTTGAAATTTGAGAAAATATTTCTT
1 AACCCTCGCTATTATATAAGCGGTCATCATTGAAATTTGAGAAAATATTTCTT
47256642 AACCCTCGCTATTATATAAGCGGTCATCATTGAAATTTGAGAAAATATTTCT
1 AACCCTCGCTATTATATAAGCGGTCATCATTGAAATTTGAGAAAATATTTCT
47256694 CATCATTTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (53 bp):
AACCCTCGCTATTATATAAGCGGTCATCATTGAAATTTGAGAAAATATTTCTT
Found at i:47270322 original size:28 final size:29
Alignment explanation
Indices: 47270255--47270355 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
47270245 ATAGTGAATC
* *
47270255 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTGTATA-ATTCAAACT
47270284 CGCACACTTAGTGCTGTATAA-TCAAACT
1 CGCACACTTAGTGCTGTATAATTCAAACT
* * *
47270312 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTGTATAA-TTCAAACT
47270342 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47270356 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 19 0.30
30 19 0.30
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTGTATAATTCAAACT
Found at i:47284268 original size:39 final size:39
Alignment explanation
Indices: 47284209--47284286 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
47284199 GTGAAAATAG
*
47284209 ACTTGGTTTAAGTCACATTTCTCACCCTCCTCAAGCATA
1 ACTTGGTTTAAGTCACATTTCTCACCCTCATCAAGCATA
*
47284248 ACTTGGTTTAAGTCATATTTCTCACCCTCATCAAGCATA
1 ACTTGGTTTAAGTCACATTTCTCACCCTCATCAAGCATA
47284287 CCTAAACCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (39 bp):
ACTTGGTTTAAGTCACATTTCTCACCCTCATCAAGCATA
Found at i:47287303 original size:199 final size:198
Alignment explanation
Indices: 47286963--47287353 Score: 755
Period size: 199 Copynumber: 2.0 Consensus size: 198
47286953 CACATTGTCC
*
47286963 TTAATGTGTAGCCCTAAATAGATAAGGAAAGAAGTTACCCAATTGTTCATGACATTTTTGTAATT
1 TTAATGTGTAGCCCTAAATAGATAAGGAAAGAAGTTACCCAATTGATCATGACATTTTTGTAATT
*
47287028 TTATGGTGGGTGGTTCATTCCTTGTTCATTGAAAGCTAAAAAATATTAGGTTTCTTTTGTATGAG
66 TTATGGTGGGTGGTTCATTCCTTGTTCATTGAAAGCTAAAAAATATTAGGCTTCTTTTGTATGAG
47287093 GTTTCTACATAGAAGACCTTTGAAAACCGAAAAAATATATATAAATCTACTATTAATCCTACTCA
131 GTTTCTACATAGAAGACCTTTGAAAACCGAAAAAA-ATATATAAATCTACTATTAATCCTACTCA
47287158 TTTT
195 TTTT
47287162 TTAATGTGTAGCCCTAAATAGATAAGGAAAGAAGTTACCCAATTGATCATGACATTTTTGTAATT
1 TTAATGTGTAGCCCTAAATAGATAAGGAAAGAAGTTACCCAATTGATCATGACATTTTTGTAATT
47287227 TTATGGTGGGTGGTTCATTCCTTGTTCATTGAAAGCTAAAAAATATTAGGCTTCTTTTGTATGAG
66 TTATGGTGGGTGGTTCATTCCTTGTTCATTGAAAGCTAAAAAATATTAGGCTTCTTTTGTATGAG
47287292 GTTTCTACATAGAAGACCTTTGAAAACCGAAAAAAATATATAAATCTACTATTAATCCTACT
131 GTTTCTACATAGAAGACCTTTGAAAACCGAAAAAAATATATAAATCTACTATTAATCCTACT
47287354 ACTAAAAAGA
Statistics
Matches: 190, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
198 27 0.14
199 163 0.86
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (198 bp):
TTAATGTGTAGCCCTAAATAGATAAGGAAAGAAGTTACCCAATTGATCATGACATTTTTGTAATT
TTATGGTGGGTGGTTCATTCCTTGTTCATTGAAAGCTAAAAAATATTAGGCTTCTTTTGTATGAG
GTTTCTACATAGAAGACCTTTGAAAACCGAAAAAAATATATAAATCTACTATTAATCCTACTCAT
TTT
Found at i:47292171 original size:2 final size:2
Alignment explanation
Indices: 47292164--47292191 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
47292154 AACACATAAC
47292164 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47292192 TGATTCATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47307829 original size:84 final size:83
Alignment explanation
Indices: 47307638--47307830 Score: 196
Period size: 84 Copynumber: 2.3 Consensus size: 83
47307628 ATAACCTGAT
* **
47307638 TTCATCACGGCAATAAGCCTGCTAGACCTTTAAGTATGATATCATTTCACCGGCATTACGCCTGC
1 TTCATCACGGCAA-AAGCCTGCTAGACCTTTAAGTACGATATCATTTCACAAGCATTACGCCTGC
**
47307703 TAGGCTCGGAGCCTGATAA
65 TAGGCTCAAAGCCTGATAA
* * * * *
47307722 -T-ATTCACCAGCTTAAAGCTTGCTAGACCTTTAAGTCCGATGTCATTTCACAAGCATTACGCCT
1 TTCA-TCA-CGGC-AAAAGCCTGCTAGACCTTTAAGTACGATATCATTTCACAAGCATTACGCCT
47307785 GCTAGGCTCAAAG-CTCGA-AA
63 GCTAGGCTCAAAGCCT-GATAA
*
47307805 TTCATCATCGGCACAAGGCCTGCTAG
1 TTCATCA-CGGCA-AAAGCCTGCTAG
47307831 GTTTGAAACC
Statistics
Matches: 87, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
82 1 0.01
83 8 0.09
84 76 0.87
85 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (83 bp):
TTCATCACGGCAAAAGCCTGCTAGACCTTTAAGTACGATATCATTTCACAAGCATTACGCCTGCT
AGGCTCAAAGCCTGATAA
Found at i:47309710 original size:14 final size:15
Alignment explanation
Indices: 47309681--47309710 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
47309671 CAAAATTAAG
47309681 ACATGATACTTTCAC
1 ACATGATACTTTCAC
47309696 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
47309710 A
1 A
47309711 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:47315660 original size:39 final size:40
Alignment explanation
Indices: 47315601--47315781 Score: 203
Period size: 39 Copynumber: 4.6 Consensus size: 40
47315591 TATTCGAATG
*
47315601 ATATCCGGGCTAAG-TCCCGAAGGC-TTT-TGTTAAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCT-AGTGACT
* * *
47315640 ATATCCGGACTAAGATCCGAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* * * * *
47315680 ATATCCGGGCCAAAACCCG-AGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
47315719 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
47315757 CATATCCGGGCTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGATCCGAAGGC
47315782 CTTGTGCAAG
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
38 4 0.03
39 79 0.67
40 33 0.28
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:47315800 original size:78 final size:79
Alignment explanation
Indices: 47315601--47315804 Score: 236
Period size: 78 Copynumber: 2.6 Consensus size: 79
47315591 TATTCGAATG
* * *
47315601 ATATCCGGGCTAAGTCCCGAAGG-CTTTTGTTAAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCCTTGTG-CAAGTGACTATATCCGGACTAAGATCCGAAGGCA
*
47315665 TTTATGCGAGTTACT
65 TTTATGCGAGTGACT
* * * * * *
47315680 ATATCCGGGCCAAAACCCG-AGGCATTTGTGCTAGCGACTATATCCGGGCTAAG-TCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGTGACTATATCCGGACTAAGATCCGAAGGCA
*
47315743 TTTATGCTAGTGA-T
65 TTTATGCGAGTGACT
**
47315757 CATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTGGTTATATCCGG
1 -ATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTGACTATATCCGG
47315805 TTAAATCCCA
Statistics
Matches: 103, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
77 1 0.01
78 59 0.57
79 39 0.38
80 4 0.04
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTGACTATATCCGGACTAAGATCCGAAGGCAT
TTATGCGAGTGACT
Found at i:47315801 original size:39 final size:40
Alignment explanation
Indices: 47315601--47315804 Score: 195
Period size: 39 Copynumber: 5.2 Consensus size: 40
47315591 TATTCGAATG
* *
47315601 ATATCCGGGCTAAGTCCCGAAGGC-TTT-TGTTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATG-CAAGTGACT
* * * *
47315640 ATATCCGGACTAAGATCCGAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACT
* * * * *
47315680 ATATCCGGGCCAAAACCCG-AGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACT
* *
47315719 ATATCCGGGCTAAG-TCCGAAGGCATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACT
* * **
47315757 CATATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGTGGTT
1 -ATATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACT
47315797 ATATCCGG
1 ATATCCGG
47315805 TTAAATCCCA
Statistics
Matches: 135, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
38 4 0.03
39 96 0.71
40 33 0.24
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGACT
Found at i:47317249 original size:43 final size:43
Alignment explanation
Indices: 47317201--47317333 Score: 150
Period size: 42 Copynumber: 3.1 Consensus size: 43
47317191 CCCGATAATA
47317201 TTCACCAGCTTAAAGCTTGCTAGACCTTTAAGTCCGATATCAT
1 TTCACCAGCTTAAAGCTTGCTAGACCTTTAAGTCCGATATCAT
* * * ** *
47317244 TTCACCGGCATT-ACGAC-TGCTAG-GCTCAAAGCCCGATA--AT
1 TTCACCAGC-TTAAAG-CTTGCTAGACCTTTAAGTCCGATATCAT
47317284 ATTCACCAGCTTAAAGCTTGCTAGACCTTTAAGTCCGATATCAT
1 -TTCACCAGCTTAAAGCTTGCTAGACCTTTAAGTCCGATATCAT
47317328 TTCACC
1 TTCACC
47317334 GGTATTACGC
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
40 5 0.07
41 16 0.23
42 22 0.31
43 22 0.31
44 5 0.07
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (43 bp):
TTCACCAGCTTAAAGCTTGCTAGACCTTTAAGTCCGATATCAT
Found at i:47317306 original size:41 final size:41
Alignment explanation
Indices: 47317177--47317307 Score: 142
Period size: 41 Copynumber: 3.1 Consensus size: 41
47317167 GCATTACGAC
47317177 TGCTAGGCTCAAAGCCCGATAATATTCACCAGCTTAAAGCT
1 TGCTAGGCTCAAAGCCCGATAATATTCACCAGCTTAAAGCT
* ** * * *
47317218 TGCTAGACCTTTAAGTCCGAT-ATCATTTCACCGGCATT-ACGAC-
1 TGCTAG-GCTCAAAGCCCGATAAT-A-TTCACCAGC-TTAAAG-CT
47317261 TGCTAGGCTCAAAGCCCGATAATATTCACCAGCTTAAAGCT
1 TGCTAGGCTCAAAGCCCGATAATATTCACCAGCTTAAAGCT
47317302 TGCTAG
1 TGCTAG
47317308 ACCTTTAAGT
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
40 3 0.04
41 24 0.34
42 22 0.31
43 18 0.26
44 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (41 bp):
TGCTAGGCTCAAAGCCCGATAATATTCACCAGCTTAAAGCT
Found at i:47317349 original size:43 final size:43
Alignment explanation
Indices: 47317218--47317350 Score: 130
Period size: 42 Copynumber: 3.1 Consensus size: 43
47317208 GCTTAAAGCT
* *
47317218 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGAC
1 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGTATTACGCC
* ** * * * * *
47317261 TGCTAG-GCTCAAAGCCCGATA--ATATTCACCAGCT-TAAAGCT
1 TGCTAGACCTTTAAGTCCGATATCAT-TTCACC-GGTATTACGCC
47317302 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGTATTACGCC
1 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGTATTACGCC
47317345 TGCTAG
1 TGCTAG
47317351 GCTCAAAGCC
Statistics
Matches: 66, Mismatches: 18, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
40 2 0.03
41 15 0.23
42 25 0.38
43 22 0.33
44 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (43 bp):
TGCTAGACCTTTAAGTCCGATATCATTTCACCGGTATTACGCC
Found at i:47317391 original size:84 final size:84
Alignment explanation
Indices: 47317162--47317361 Score: 382
Period size: 84 Copynumber: 2.4 Consensus size: 84
47317152 CGGGGTGTTA
47317162 CACCGGCATTACGACTGCTAGGCTCAAAGCCCGATAATATTCACCAGCTTAAAGCTTGCTAGACC
1 CACCGGCATTACGACTGCTAGGCTCAAAGCCCGATAATATTCACCAGCTTAAAGCTTGCTAGACC
47317227 TTTAAGTCCGATATCATTT
66 TTTAAGTCCGATATCATTT
47317246 CACCGGCATTACGACTGCTAGGCTCAAAGCCCGATAATATTCACCAGCTTAAAGCTTGCTAGACC
1 CACCGGCATTACGACTGCTAGGCTCAAAGCCCGATAATATTCACCAGCTTAAAGCTTGCTAGACC
47317311 TTTAAGTCCGATATCATTT
66 TTTAAGTCCGATATCATTT
* *
47317330 CACCGGTATTACGCCTGCTAGGCTCAAAGCCC
1 CACCGGCATTACGACTGCTAGGCTCAAAGCCC
47317362 AAAATTCATC
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 114 1.00
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (84 bp):
CACCGGCATTACGACTGCTAGGCTCAAAGCCCGATAATATTCACCAGCTTAAAGCTTGCTAGACC
TTTAAGTCCGATATCATTT
Found at i:47320172 original size:29 final size:27
Alignment explanation
Indices: 47320138--47320240 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
47320128 TACTCAATCA
*
47320138 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
47320167 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
47320196 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
47320225 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
47320241 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:47323857 original size:27 final size:27
Alignment explanation
Indices: 47323819--47323902 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
47323809 GTATGGGTAT
47323819 GGCACTGGGTGTGCGGGCTTAAATTAC
1 GGCACTGGGTGTGCGGGCTTAAATTAC
* * *** *
47323846 GGCACTGGGTGTGCGAGCTCGGAGGGTAT
1 GGCACTGGGTGTGCGGGCT--TAAATTAC
*
47323875 GGCACTGTGTGTGCGGGCTTAAATTAC
1 GGCACTGGGTGTGCGGGCTTAAATTAC
47323902 G
1 G
47323903 TGGCACTAAG
Statistics
Matches: 42, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
27 22 0.52
29 20 0.48
ACGTcount: A:0.17, C:0.18, G:0.40, T:0.25
Consensus pattern (27 bp):
GGCACTGGGTGTGCGGGCTTAAATTAC
Found at i:47323906 original size:29 final size:28
Alignment explanation
Indices: 47323818--47323918 Score: 89
Period size: 29 Copynumber: 3.6 Consensus size: 28
47323808 TGTATGGGTA
47323818 TGGCACTGGGTGTGCGGGCTTAAATTAC
1 TGGCACTGGGTGTGCGGGCTTAAATTAC
* * ***
47323846 -GGCACTGGGTGTGCGAGCTCGGAGGGTA-
1 TGGCACTGGGTGTGCGGGCT--TAAATTAC
*
47323874 TGGCACTGTGTGTGCGGGCTTAAATTAC
1 TGGCACTGGGTGTGCGGGCTTAAATTAC
**
47323902 GTGGCACTAAGTGTGCG
1 -TGGCACTGGGTGTGCG
47323919 AAATCGAGTA
Statistics
Matches: 55, Mismatches: 13, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
27 21 0.38
29 34 0.62
ACGTcount: A:0.17, C:0.18, G:0.40, T:0.26
Consensus pattern (28 bp):
TGGCACTGGGTGTGCGGGCTTAAATTAC
Found at i:47329689 original size:39 final size:40
Alignment explanation
Indices: 47329592--47329738 Score: 176
Period size: 40 Copynumber: 3.7 Consensus size: 40
47329582 TAATAGCTTG
**
47329592 CACAAATGCCTTCGGGA-CTTAACCCGGATTTGGGAACTCA
1 CACAAATGCCTTC-GGATCTTAGTCCGGATTTGGGAACTCA
47329632 CACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAACTCA
1 CACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAACTCA
* ** *
47329672 CA-AAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTA
1 CACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAACTCA
*
47329711 GCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 -CACAAATGCCTTC-GGATCTTAGTCCGGA
47329739 CATCATGCGA
Statistics
Matches: 96, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
39 36 0.38
40 54 0.56
41 6 0.06
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CACAAATGCCTTCGGATCTTAGTCCGGATTTGGGAACTCA
Found at i:47332399 original size:40 final size:40
Alignment explanation
Indices: 47332329--47332536 Score: 195
Period size: 40 Copynumber: 5.2 Consensus size: 40
47332319 CAATCGAATG
* * * * *
47332329 ATATCCAGGCTAAGTCCCGAAGACATTTGTGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* * * * *
47332369 ATATTCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* **
47332409 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
* * * **
47332449 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
* **
47332489 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAATT
47332529 ATATCCGG
1 ATATCCGG
47332537 ATGTAATCCG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 5 0.04
40 134 0.95
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAATT
Found at i:47332479 original size:80 final size:80
Alignment explanation
Indices: 47332331--47332536 Score: 243
Period size: 80 Copynumber: 2.6 Consensus size: 80
47332321 ATCGAATGAT
* * * * * * * *
47332331 ATCCAGGCTAAGTCCCGAAGACATTTGTGCTAGTAATTATATTCGGGTTAAGACCCGAAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
*
47332396 TGTGCTAGT-GACTAC
66 TGTGCAAGTCG-CTAC
* * * *
47332411 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
* *
47332476 TGTGCAAGTCGTTAT
66 TGTGCAAGTCGCTAC
* *
47332491 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
47332537 ATGTAATCCG
Statistics
Matches: 107, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
80 106 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCAAGTCGCTAC
Found at i:47342043 original size:116 final size:116
Alignment explanation
Indices: 47341839--47342052 Score: 410
Period size: 116 Copynumber: 1.8 Consensus size: 116
47341829 GTGGTTTTGC
47341839 AAGTTTTTCGGGAGAAGCAGTTGTATGCGAAGCTGAGCAAGTGTGAATTTTGGTTTCATGAGGTG
1 AAGTTTTTCGGGAGAAGCAGTTGTATGCGAAGCTGAGCAAGTGTGAATTTTGGTTTCATGAGGTG
47341904 GGTTTTTTAGGTCATGTCATTTCAACTGAAGGTATTCGAGTTGATCTGAAG
66 GGTTTTTTAGGTCATGTCATTTCAACTGAAGGTATTCGAGTTGATCTGAAG
*
47341955 AAGTTTTTCGGGAGAAGCAGTTGTATGTGAAGCTGAGCAAGTGTGAATTTTGGTTTCATGAGGTG
1 AAGTTTTTCGGGAGAAGCAGTTGTATGCGAAGCTGAGCAAGTGTGAATTTTGGTTTCATGAGGTG
*
47342020 GGTTTTTTAGGTCATGTCGTTTCAACTGAAGGT
66 GGTTTTTTAGGTCATGTCATTTCAACTGAAGGT
47342053 TGAGGCGATT
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 96 1.00
ACGTcount: A:0.23, C:0.10, G:0.31, T:0.36
Consensus pattern (116 bp):
AAGTTTTTCGGGAGAAGCAGTTGTATGCGAAGCTGAGCAAGTGTGAATTTTGGTTTCATGAGGTG
GGTTTTTTAGGTCATGTCATTTCAACTGAAGGTATTCGAGTTGATCTGAAG
Found at i:47345168 original size:48 final size:48
Alignment explanation
Indices: 47345068--47345200 Score: 153
Period size: 48 Copynumber: 2.8 Consensus size: 48
47345058 GTGCAAGTAA
* * *
47345068 TACCTTGATTTGGCTATGGGCCATGATATAGGTA-TTTCAGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTT-AGAGAGAAGC
* *
47345116 TACCTTGATTTGGCTATGAGGCCATGGTATAGGTACTTT-GGGATAAGC
1 TACCTTGATTTGGCTATG-GGCCATGGTATAGGTACTTTAGAGAGAAGC
* * * *
47345164 TACCTTGATTTAGTTACGGGCCATGGTATAAGTACTT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTT
47345201 ATCGATTGAG
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
47 18 0.24
48 38 0.51
49 15 0.20
50 3 0.04
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (48 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTTTAGAGAGAAGC
Found at i:47347106 original size:40 final size:40
Alignment explanation
Indices: 47347060--47347141 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
47347050 GTTGTAACAA
47347060 TCTTGCACACTTAGTGCCATTTCAATAAACCAAAACTATC
1 TCTTGCACACTTAGTGCCATTTCAATAAACCAAAACTATC
**
47347100 TCTTGCACACTTAGTGCCATTTCAATAAACTGAAACTATC
1 TCTTGCACACTTAGTGCCATTTCAATAAACCAAAACTATC
47347140 TC
1 TC
47347142 GGTATCACAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.27, G:0.09, T:0.32
Consensus pattern (40 bp):
TCTTGCACACTTAGTGCCATTTCAATAAACCAAAACTATC
Found at i:47347201 original size:40 final size:40
Alignment explanation
Indices: 47347149--47347240 Score: 107
Period size: 40 Copynumber: 2.3 Consensus size: 40
47347139 CTCGGTATCA
*
47347149 CACACTTAGTGCC-TCATATAGTCGAAGCTA-TTCCAACTCG
1 CACACTTAGTGCCAT-ATATAGCCGAAGCTATTTCCAAC-CG
* * * *
47347189 CACACTTAGTGCCATTTGTAGCCGAAGTTATTTCGAACCG
1 CACACTTAGTGCCATATATAGCCGAAGCTATTTCCAACCG
47347229 CACACTTAGTGC
1 CACACTTAGTGC
47347241 TGAACTTAGT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
40 38 0.84
41 7 0.16
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (40 bp):
CACACTTAGTGCCATATATAGCCGAAGCTATTTCCAACCG
Found at i:47351582 original size:28 final size:28
Alignment explanation
Indices: 47351545--47351618 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
47351535 GTTCAAATTG
* *
47351545 TATAGCACTAAGTGTGCGAGTTTGATTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
47351573 TATAGCACTAAGTGTGCGAGTTCGACTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
47351601 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
47351619 GGCTTATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTCGACTA
Found at i:47359579 original size:28 final size:28
Alignment explanation
Indices: 47359542--47359615 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 28
47359532 GTTCAAATTG
* *
47359542 TATAGCACTAAGTGTGCGAGTTTGATTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
*
47359570 TATAGCACTAAGTGTTCGAGTTCGACTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
47359598 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
47359616 GGCTTATTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 1 0.02
28 40 0.98
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTCGACTA
Found at i:47362508 original size:40 final size:40
Alignment explanation
Indices: 47362381--47362510 Score: 129
Period size: 40 Copynumber: 3.2 Consensus size: 40
47362371 ATGCTGGAAA
* * * *
47362381 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
47362421 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
* *
47362461 TTCTATCCAGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
47362501 TTATATCCGG
1 TTATATCCGG
47362511 TTATATTCCG
Statistics
Matches: 69, Mismatches: 19, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:47366652 original size:39 final size:39
Alignment explanation
Indices: 47366552--47366787 Score: 393
Period size: 39 Copynumber: 6.1 Consensus size: 39
47366542 ATGCAAGACA
47366552 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
47366591 CT-GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
47366629 CTGGAAATATATCCGGGCCAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
47366668 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
47366707 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
47366746 CTGGAAATGTATCCGGGTTAAAGTCCCGTAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
47366785 CTG
1 CTG
47366788 ATAATATAAT
Statistics
Matches: 183, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
38 38 0.21
39 145 0.79
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:47385138 original size:40 final size:40
Alignment explanation
Indices: 47385047--47385157 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
47385037 ATAACCACGT
* *
47385047 GCACGAATGCCTTCGGATCTTAGCCCGGATAGAATGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
47385087 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
*
47385127 GCAC-AATTGCCTTCGGGTCTTAACCCGGATA
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATA
47385158 TAATTTCCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
38 1 0.02
39 4 0.06
40 58 0.92
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:47385175 original size:40 final size:40
Alignment explanation
Indices: 47385031--47385193 Score: 136
Period size: 40 Copynumber: 4.1 Consensus size: 40
47385021 CAGAATACAA
** *
47385031 CCGGATATAACCACGTGCACGAA-TGCCTTCGGATCTTAGC
1 CCGGATATAACCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* **
47385071 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
47385111 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * *
47385151 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
47385190 CCGG
1 CCGG
47385194 GTATCATTCA
Statistics
Matches: 99, Mismatches: 21, Indels: 7
0.78 0.17 0.06
Matches are distributed among these distances:
39 11 0.11
40 88 0.89
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:47397884 original size:29 final size:29
Alignment explanation
Indices: 47397851--47397952 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
47397841 TGACGAGATC
47397851 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
47397880 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
47397909 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
47397938 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
47397953 AGCTCGGAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:47405194 original size:29 final size:27
Alignment explanation
Indices: 47405160--47405262 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
47405150 TACTCAATCA
*
47405160 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
47405189 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
47405218 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
47405247 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
47405263 ATCTCGTCCC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:47411481 original size:43 final size:43
Alignment explanation
Indices: 47411347--47411482 Score: 127
Period size: 43 Copynumber: 3.2 Consensus size: 43
47411337 CAGACAATAA
*
47411347 GCCTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTAC
1 GCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTAC
* *** * * *
47411390 GCCTGCTAG-GCTCGGAGACCGATA--ATATTCACCAGC-TTAAA
1 GCCTGCTAGACCTTTAAGTCCGATATCAT-TTCACCGGCATT-AC
* * *
47411431 ACTTGCTAGACCTTTAAGTCCGATATCATTTCACTGGCATTAC
1 GCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTAC
47411474 GCCTGCTAG
1 GCCTGCTAG
47411483 GCTCAAACCC
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
40 4 0.06
41 16 0.24
42 19 0.28
43 24 0.36
44 4 0.06
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (43 bp):
GCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTAC
Found at i:47411523 original size:84 final size:83
Alignment explanation
Indices: 47411345--47411508 Score: 199
Period size: 84 Copynumber: 2.0 Consensus size: 83
47411335 CACAGACAAT
* *
47411345 AAGCCTGCTAGACCTTTAAGTCTGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGGAGACC
1 AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTC-GAAACC
* * * **
47411410 GATAATATTCACCAGCTTA
65 CAGAATATTCAACAGCCGA
* * *
47411429 AAACTTGCTAGACCTTTAAGTCCGATATCATTTCACTGGCATTACGCCTGCTAGGCTC-AAACCC
1 AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGAAACCC
*
47411493 CGAA-ATTCAACA-CCGA
66 AGAATATTCAACAGCCGA
47411509 CACCAGGCCT
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
80 2 0.03
81 7 0.10
82 6 0.09
84 54 0.78
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (83 bp):
AAGCCTGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCCTGCTAGGCTCGAAACCC
AGAATATTCAACAGCCGA
Found at i:47413396 original size:14 final size:15
Alignment explanation
Indices: 47413367--47413396 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
47413357 CAAAATTAAG
47413367 ACATGATACTTTCAC
1 ACATGATACTTTCAC
47413382 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
47413396 A
1 A
47413397 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:47416500 original size:29 final size:30
Alignment explanation
Indices: 47416454--47416535 Score: 89
Period size: 29 Copynumber: 2.8 Consensus size: 30
47416444 TCAGTCTCGA
* * *
47416454 CATA-TACTGGGCTGAAGCCTTTCGTTTAA-
1 CATATTACTGGGCCGAAGCCTTTC-ATAAAT
47416483 C-TATTACTGGGCCGAAGCCTTTTCATAAAT
1 CATATTACTGGGCCGAAGCC-TTTCATAAAT
*
47416513 CATATCACTGGGCCGAAGCCTTT
1 CATATTACTGGGCCGAAGCCTTT
47416536 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
28 2 0.04
29 18 0.40
30 8 0.18
31 17 0.38
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (30 bp):
CATATTACTGGGCCGAAGCCTTTCATAAAT
Found at i:47416784 original size:25 final size:25
Alignment explanation
Indices: 47416756--47416850 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
47416746 CTCTTTTAAT
*
47416756 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
47416781 AACTGGGGCAAATCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
* *
47416806 AACTCGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
47416831 AACTGAGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
47416851 AGCACTTCCT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:47417128 original size:27 final size:27
Alignment explanation
Indices: 47417055--47417134 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 27
47417045 GGGGCAAAAT
* * *
47417055 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
47417082 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
47417109 GGTAATTTTACCATATAGGGGTATTT
1 GGTAATTTTACCCTACAGGGGTATTT
47417135 TAATAATTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:47417141 original size:27 final size:27
Alignment explanation
Indices: 47417057--47417144 Score: 68
Period size: 27 Copynumber: 3.3 Consensus size: 27
47417047 GGCAAAATGG
** * * **
47417057 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTTTACCATACAGGGGTATTTCAA
* * **
47417084 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTTTACCATACAGGGGTATTTCAA
* *
47417111 TAATTTTACCATATAGGGGTATTTTAA
1 TAATTTTACCATACAGGGGTATTTCAA
47417138 TAATTTT
1 TAATTTT
47417145 GTAAATCGAG
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (27 bp):
TAATTTTACCATACAGGGGTATTTCAA
Found at i:47418544 original size:2 final size:2
Alignment explanation
Indices: 47418503--47418527 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
47418493 TGTGGAGTAC
47418503 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
47418528 TAAAAGGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:47419736 original size:23 final size:23
Alignment explanation
Indices: 47419687--47419736 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
47419677 GTTGTTTTAT
* *
47419687 TAAAAATGGGGTAATATGTTTAT
1 TAAAAATGGGGTAATATGTTAAA
*
47419710 TAAAAATGGGGATAATCTG-TAAA
1 TAAAAATGGGG-TAATATGTTAAA
47419733 TAAA
1 TAAA
47419737 TTCGAAAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.46, C:0.02, G:0.20, T:0.32
Consensus pattern (23 bp):
TAAAAATGGGGTAATATGTTAAA
Found at i:47420742 original size:6 final size:6
Alignment explanation
Indices: 47420731--47420923 Score: 184
Period size: 6 Copynumber: 31.8 Consensus size: 6
47420721 AACCAAAATG
*
47420731 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
47420779 AGTAA-C AGAATC AGAATC AGAATC AGAATC AGAATT TG-GTGAC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* * *
47420828 AGAATC AGAATC AGTAA-C ATAATC AGAATC AGAATC AGTATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC
*
47420876 AGAATC AGAATC AGAATC AGAATT ACGTAA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
47420924 GTGAATGCAA
Statistics
Matches: 155, Mismatches: 16, Indels: 32
0.76 0.08 0.16
Matches are distributed among these distances:
5 12 0.08
6 130 0.84
7 9 0.06
8 4 0.03
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:47420830 original size:91 final size:91
Alignment explanation
Indices: 47420731--47420898 Score: 318
Period size: 91 Copynumber: 1.8 Consensus size: 91
47420721 AACCAAAATG
47420731 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
47420796 CAGAATCAGAATCAGAATTTGGTGAC
66 CAGAATCAGAATCAGAATTTGGTGAC
* *
47420822 AGAATCAGAATCAGAATCAGTAACATAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
47420887 CAGAATCAGAAT
66 CAGAATCAGAAT
47420899 TACGTAACAG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 75 1.00
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (91 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATCAGAATTTGGTGAC
Found at i:47420916 original size:91 final size:90
Alignment explanation
Indices: 47420731--47420923 Score: 282
Period size: 91 Copynumber: 2.1 Consensus size: 90
47420721 AACCAAAATG
47420731 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
** *
47420796 CAGAATCAGAATCAGAATTTGGTGAC
66 CAGAATCAGAATCAGAATCAGAT-AC
* *
47420822 AGAATCAGAATCAGAATCAGTAACATAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
*
47420887 CAGAATCAGAATTACGTAA-CAGA-ATC
66 CAGAATCAGAATCA-G-AATCAGATA-C
47420913 AGAATCAGAAT
1 AGAATCAGAAT
47420924 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
90 1 0.01
91 88 0.95
92 2 0.02
93 2 0.02
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.21
Consensus pattern (90 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAGAAT
CAGAATCAGAATCAGAATCAGATAC
Found at i:47421111 original size:27 final size:27
Alignment explanation
Indices: 47421041--47421114 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
47421031 AGCATGGCTG
* *
47421041 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
47421067 CCAGATAT-AGATATTGTGGCAGAGCCA
1 CCAGA-ATCAGATAATGTGGCAGAGCCA
47421094 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
47421115 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 7 0.17
27 32 0.80
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:47421121 original size:27 final size:27
Alignment explanation
Indices: 47421065--47421122 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
47421055 GTGACAGAGT
* * *
47421065 CACCAGATATAGATATTGTGGCAGAGC
1 CACCAGATATAGATAATGTGGCAAACC
47421092 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATAT-AGATAATGTGGCAAACC
47421119 CACC
1 CACC
47421123 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.17
Consensus pattern (27 bp):
CACCAGATATAGATAATGTGGCAAACC
Found at i:47421327 original size:22 final size:22
Alignment explanation
Indices: 47421279--47421337 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
47421269 GTAAATACGT
*
47421279 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
47421301 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
47421323 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
47421338 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:47421490 original size:27 final size:26
Alignment explanation
Indices: 47421428--47421507 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
47421418 ATCGGTCAAT
* * *
47421428 AGATATTGTGACAGAGTCACCAAATAC
1 AGATATTGTGGCAGAGCCACCAGA-AC
47421455 AGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAC
* *
47421481 AGATATTTGTGGCATAGCCATCAGAAC
1 AGATA-TTGTGGCAGAGCCACCAGAAC
47421508 GCTTCCTCCG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 7 0.15
27 40 0.85
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAC
Found at i:47421736 original size:27 final size:27
Alignment explanation
Indices: 47421706--47421901 Score: 203
Period size: 27 Copynumber: 7.3 Consensus size: 27
47421696 GGGACAAAAT
* * *
47421706 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47421733 GGTAATACTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47421760 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
47421787 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
47421814 GGTAATGCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
47421841 AGTAACTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
47421868 GGAAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47421895 AGTAATT
1 GGTAATT
47421902 TCACAATCAA
Statistics
Matches: 137, Mismatches: 32, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:47421772 original size:54 final size:53
Alignment explanation
Indices: 47421706--47421900 Score: 237
Period size: 54 Copynumber: 3.6 Consensus size: 53
47421696 GGGACAAAAT
* * * *
47421706 GGTAATTTTACCCCACAAGGGTATCTCGGTAATACTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAAT-CTACCCTACAGGGGTATTTC
* * *
47421760 GGTATTTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAA-TCTACCCTACAGGGGTATTTC
* * * *
47421814 GGTAATGCTATCCTATAAGGGTATTTCAGTAACTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAA-TCTACCCTACAGGGGTATTTC
* * *
47421868 GGAAATTCTACCATACAGGGGTATTTCAGTAAT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAAT
47421901 TTCACAATCA
Statistics
Matches: 119, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.01
54 117 0.98
55 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (53 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATCTACCCTACAGGGGTATTTC
Found at i:47421936 original size:27 final size:27
Alignment explanation
Indices: 47421906--47422123 Score: 255
Period size: 27 Copynumber: 8.1 Consensus size: 27
47421896 GTAATTTCAC
*
47421906 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
47421933 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
*
47421960 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* * * **
47421987 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
47422014 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
47422041 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
47422068 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
*
47422095 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
47422122 AA
1 AA
47422124 ACGGGAGTAC
Statistics
Matches: 167, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
26 4 0.02
27 160 0.96
28 3 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:47422007 original size:81 final size:81
Alignment explanation
Indices: 47421906--47422123 Score: 323
Period size: 81 Copynumber: 2.7 Consensus size: 81
47421896 GTAATTTCAC
* *
47421906 AATCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGT
1 AATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATC-GAGGGT
*
47421970 AAACCAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
** * * *
47421987 AATCAAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
47422052 AAACAGTAATTCTGTA
66 AAACAGTAATTCTGTA
*
47422068 AA-CTGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAA
1 AATC-AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAA
47422124 ACGGGAGTAC
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
80 1 0.01
81 119 0.98
82 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:47422145 original size:54 final size:54
Alignment explanation
Indices: 47421911--47422123 Score: 304
Period size: 54 Copynumber: 3.9 Consensus size: 54
47421901 TTCACAATCA
*
47421911 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTG
* * * * **
47421965 AGGGTAAACCAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACAAA-TCG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACT-G
* *
47422019 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC-AGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTTTGTAAACTG
*
47422073 AGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAA
47422124 ACGGGAGTAC
Statistics
Matches: 139, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 136 0.98
55 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (54 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTG
Found at i:47424153 original size:6 final size:6
Alignment explanation
Indices: 47424142--47424358 Score: 223
Period size: 6 Copynumber: 35.8 Consensus size: 6
47424132 AACCAAAATG
*
47424142 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
47424190 AGTAA-C AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
* *
47424238 AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C AGAATC
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC AGAATC
* * * * *
47424287 AAAATC AGAATT AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
*
47424335 ACGTGA-C AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
47424359 GTGAATGCAA
Statistics
Matches: 179, Mismatches: 16, Indels: 32
0.79 0.07 0.14
Matches are distributed among these distances:
5 11 0.06
6 155 0.87
7 10 0.06
8 3 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:47424293 original size:85 final size:85
Alignment explanation
Indices: 47424142--47424330 Score: 210
Period size: 85 Copynumber: 2.2 Consensus size: 85
47424132 AACCAAAATG
* *
47424142 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCA-ATATTAGTAACAGAATCAGAA
1 AGAATCAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAGA-ATCAGTAACAGAATCAGAA
*
47424206 TCAGAATCAGAATCA-G-AATC
65 TCAGAATCAGAATTACGTAA-C
* * * *
47424226 AGAATCAGAATCAGAATCAG-AATTAG-GTGACAGAATCAGAATCAGAATCAGTAACAGAATCAA
1 AGAATCAGAATCAGAATCAGTAA-CAGAAT--CAAAATCAGAATCAGAATCAGTAACAGAATCAG
* *
47424289 AATCAGAATTAGTATTA-GTAAC
63 AATCAGAATCAGAATTACGTAAC
47424311 AGAATCAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
47424331 AATTACGTGA
Statistics
Matches: 93, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
83 3 0.03
84 22 0.24
85 65 0.70
86 3 0.03
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAAAATCAGAATCAGAATCAGTAACAGAATCAGAAT
CAGAATCAGAATTACGTAAC
Found at i:47424295 original size:30 final size:30
Alignment explanation
Indices: 47424142--47424358 Score: 279
Period size: 30 Copynumber: 7.4 Consensus size: 30
47424132 AACCAAAATG
*
47424142 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
47424172 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATTAGTAACAGAATC
*
47424202 AGAATCAGAATCAGAATCAG-AATCAGAATC
1 AGAATCAGAATCAGAATTAGTAA-CAGAATC
47424232 AGAATCAGAATCAGAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
*
47424257 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
* * *
47424287 AAAATCAGAATTAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
47424317 AGAATCAGAATCAGAATTACGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
47424348 AGAATCAGAAT
1 AGAATCAGAAT
47424359 GTGAATGCAA
Statistics
Matches: 163, Mismatches: 12, Indels: 23
0.82 0.06 0.12
Matches are distributed among these distances:
24 2 0.01
25 19 0.12
26 1 0.01
27 1 0.01
28 1 0.01
29 4 0.02
30 112 0.69
31 23 0.14
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:47424519 original size:27 final size:26
Alignment explanation
Indices: 47424480--47424546 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
47424470 TGGCTGCCAA
*
47424480 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGACAGAGCCACCAG
**
47424506 ATACAGATATTGTGGTAGAGCCACCAG
1 A-ACAGATATTGTGACAGAGCCACCAG
*
47424533 AATCAGATAATGTG
1 AA-CAGATATTGTG
47424547 GCAAACTCAC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.06
27 33 0.94
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.22
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAG
Found at i:47424762 original size:22 final size:22
Alignment explanation
Indices: 47424714--47424772 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
47424704 GTAAATACGT
*
47424714 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
47424736 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
47424758 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
47424773 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:47424898 original size:27 final size:26
Alignment explanation
Indices: 47424859--47424941 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 26
47424849 TCGATCGGTC
*
47424859 AACAGATATTGTGACAGAGTCACC-G
1 AACAGATATTGTGACAGAGCCACCAG
*
47424884 AATACAGATATTGTGGCAGAGCCACCAG
1 -A-ACAGATATTGTGACAGAGCCACCAG
* * *
47424912 AACAGATATTTGTGGCATAGCCGCCAG
1 AACAGATA-TTGTGACAGAGCCACCAG
47424939 AAC
1 AAC
47424942 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 8 0.16
27 41 0.82
28 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGACAGAGCCACCAG
Found at i:47425178 original size:27 final size:27
Alignment explanation
Indices: 47425140--47425336 Score: 214
Period size: 27 Copynumber: 7.3 Consensus size: 27
47425130 GGGGCAAAAT
* * *
47425140 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47425167 GGTAATACTACCCTACAGGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGGTATTTC
* *
47425195 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
47425222 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
47425249 GGTAATGCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
47425276 AGTAACTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
47425303 GGAAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
47425330 AGTAATT
1 GGTAATT
47425337 TCACAATCAA
Statistics
Matches: 138, Mismatches: 31, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
27 115 0.83
28 23 0.17
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:47425371 original size:27 final size:27
Alignment explanation
Indices: 47425341--47425561 Score: 243
Period size: 27 Copynumber: 8.2 Consensus size: 27
47425331 GTAATTTCAC
*
47425341 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
47425368 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
*
47425395 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
** * * **
47425422 AATTAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
47425449 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
47425476 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
47425503 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
*
47425530 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
47425557 AATCG
1 AATCG
47425562 GGAGTACTTT
Statistics
Matches: 166, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.02
27 160 0.96
28 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:47425578 original size:81 final size:81
Alignment explanation
Indices: 47425345--47425561 Score: 319
Period size: 81 Copynumber: 2.7 Consensus size: 81
47425335 TTTCACAATC
* * *
47425345 AAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAC
1 AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATC-GAGGGTAAAA
* *
47425409 CAGTAATTCTGTAAATT
65 TAGTAATTCTGTAAACT
** * * *
47425426 AAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAT
1 AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAAT
47425491 AGTAATTCTGTAAACT
66 AGTAATTCTGTAAACT
*
47425507 GAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCG
1 AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCG
47425562 GGAGTACTTT
Statistics
Matches: 119, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
81 118 0.99
82 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
AAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAAT
AGTAATTCTGTAAACT
Found at i:47425580 original size:54 final size:54
Alignment explanation
Indices: 47425346--47425558 Score: 286
Period size: 54 Copynumber: 3.9 Consensus size: 54
47425336 TTCACAATCA
*
47425346 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTG
* * ** * **
47425400 AGGGTAAACCAGTAATTCTGTAAATTAAGGGTAAAACGGTAATTTTACAAA-TCG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACT-G
* * *
47425454 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA-TAGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGA-TAATTTTGTAAACTG
*
47425508 AGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAA
47425559 TCGGGAGTAC
Statistics
Matches: 135, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 132 0.98
55 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (54 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAACTG
Found at i:47425797 original size:17 final size:17
Alignment explanation
Indices: 47425777--47425815 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
47425767 AACTTATCCA
*
47425777 ATTGGGCCCGTAGGCCC
1 ATTGGGCCCGCAGGCCC
*
47425794 ATTGGGCTCGCAGGCCC
1 ATTGGGCCCGCAGGCCC
47425811 ATTGG
1 ATTGG
47425816 CCCACATGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.13, C:0.31, G:0.36, T:0.21
Consensus pattern (17 bp):
ATTGGGCCCGCAGGCCC
Found at i:47426534 original size:12 final size:12
Alignment explanation
Indices: 47426517--47426541 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47426507 TTGGGTTAGT
47426517 GTTTTGGGCTAA
1 GTTTTGGGCTAA
47426529 GTTTTGGGCTAA
1 GTTTTGGGCTAA
47426541 G
1 G
47426542 GGTTTTGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.36, T:0.40
Consensus pattern (12 bp):
GTTTTGGGCTAA
Found at i:47426635 original size:27 final size:27
Alignment explanation
Indices: 47426606--47426990 Score: 382
Period size: 27 Copynumber: 14.3 Consensus size: 27
47426596 GCTTGTACAA
*
47426606 GTAATTTTACAAATT-GAGGGTATTTTA
1 GTAATTTTACAAATTAG-GGGTATTTTG
* *
47426633 GTAATTTTACAAACT-GAGGGTATTTCG
1 GTAATTTTACAAATTAG-GGGTATTTTG
*
47426660 GTAATTTCACAAATTAGGGGTATTTTG
1 GTAATTTTACAAATTAGGGGTATTTTG
**
47426687 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAATTAGGGGTATTTTG
* ** *
47426714 GTAATTTTATAAACCAAGGGTATTTTG
1 GTAATTTTACAAATTAGGGGTATTTTG
* * * **
47426741 GTATTTTTAC-AAGTCGAGGGTATTTCA
1 GTAATTTTACAAATTAG-GGGTATTTTG
* * *
47426768 ATAATTTCACATATTAGGGGTATTTTG
1 GTAATTTTACAAATTAGGGGTATTTTG
* * * **
47426795 GTAATTTTACAAGTCAAGGGTATTTCA
1 GTAATTTTACAAATTAGGGGTATTTTG
* * *
47426822 ATAATTTTACAAATCAAGGGTATTTTG
1 GTAATTTTACAAATTAGGGGTATTTTG
* *
47426849 GTAATTTCACAAACTAGGGGTATTTTG
1 GTAATTTTACAAATTAGGGGTATTTTG
*
47426876 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAATTAGGGGTATTTTG
*
47426903 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAATTAGGGGTATTTTG
** * *
47426930 GTAATTTTACAAACCATGGGTATTTTA
1 GTAATTTTACAAATTAGGGGTATTTTG
* *
47426957 GTAATTTTACAAATT-GCGGGCATTTTA
1 GTAATTTTACAAATTAG-GGGTATTTTG
47426984 GTAATTT
1 GTAATTT
47426991 GGTAAACTAA
Statistics
Matches: 302, Mismatches: 52, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
26 2 0.01
27 296 0.98
28 4 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAATTAGGGGTATTTTG
Found at i:47429590 original size:43 final size:43
Alignment explanation
Indices: 47429542--47429674 Score: 114
Period size: 43 Copynumber: 3.1 Consensus size: 43
47429532 GCAATAAGCC
47429542 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCA
1 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCA
* *** ** * *
47429585 TGCTAG-GCTCGGAG-CTCGATA--ATATTCACCAAC-TTAAAGCT
1 TGCTAGACCTTTAAGTC-CGATATCAT-TTCACCGGCATT-ACGCA
* *
47429626 TGGTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCC
1 TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCA
47429669 TGCTAG
1 TGCTAG
47429675 GCTTAAACCC
Statistics
Matches: 64, Mismatches: 18, Indels: 16
0.65 0.18 0.16
Matches are distributed among these distances:
40 4 0.06
41 16 0.25
42 18 0.28
43 22 0.34
44 4 0.06
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (43 bp):
TGCTAGACCTTTAAGTCCGATATCATTTCACCGGCATTACGCA
Found at i:47431570 original size:14 final size:15
Alignment explanation
Indices: 47431541--47431570 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
47431531 CAAAATTAAG
47431541 ACATGATACTTTCAC
1 ACATGATACTTTCAC
47431556 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
47431570 A
1 A
47431571 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:47436723 original size:12 final size:12
Alignment explanation
Indices: 47436708--47436736 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
47436698 ATATATTTAA
47436708 AAATATTAAAAT
1 AAATATTAAAAT
47436720 AAATATTAAAAT
1 AAATATTAAAAT
47436732 AAATA
1 AAATA
47436737 AAAATAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAATATTAAAAT
Found at i:47436723 original size:24 final size:25
Alignment explanation
Indices: 47436665--47436725 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
47436655 CTTATTTCAT
* *
47436665 TAAATAAAAAAATTTAAAAATATAA
1 TAAATAAATATATTTAAAAATATAA
*
47436690 TAAATCAAATATATTTAAAAATATTA
1 TAAAT-AAATATATTTAAAAATATAA
47436716 -AAATAAATAT
1 TAAATAAATAT
47436726 TAAAATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 9 0.28
26 17 0.53
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAATAAATATATTTAAAAATATAA
Found at i:47436745 original size:21 final size:20
Alignment explanation
Indices: 47436665--47436751 Score: 61
Period size: 21 Copynumber: 4.0 Consensus size: 20
47436655 CTTATTTCAT
47436665 TAAATAAAAAAAT-TTAAAAA
1 TAAATAAAAAAATATT-AAAA
47436685 TATAATAAATCAAATATATTTAAAA
1 TA-AATAAA--AAA-ATA-TTAAAA
*
47436710 -ATATTAAAATAAATATTAAAA
1 TA-AATAAAA-AAATATTAAAA
*
47436731 TAAATAAAAATAATACTAAAA
1 TAAATAAAAA-AATATTAAAA
47436752 CAATTCTTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
20 3 0.05
21 27 0.49
22 5 0.09
23 5 0.09
24 9 0.16
25 4 0.07
26 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
TAAATAAAAAAATATTAAAA
Found at i:47436831 original size:15 final size:16
Alignment explanation
Indices: 47436801--47436841 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
47436791 AAATAGTTAT
47436801 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
47436818 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
47436833 A--AAAAATTA
1 ATTAAAAATTA
47436842 TATATTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.22
14 2 0.09
15 8 0.35
17 8 0.35
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:47442693 original size:20 final size:20
Alignment explanation
Indices: 47442670--47442721 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
47442660 GTGGTCATAC
47442670 ACACGTCCGTGTGGCTTAGG
1 ACACGTCCGTGTGGCTTAGG
*
47442690 ACACG-CCAGTGTGGCTTGGG
1 ACACGTCC-GTGTGGCTTAGG
*
47442710 ACACATCCGTGT
1 ACACGTCCGTGT
47442722 CCTCAGCCCG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.17, C:0.27, G:0.33, T:0.23
Consensus pattern (20 bp):
ACACGTCCGTGTGGCTTAGG
Found at i:47444971 original size:155 final size:152
Alignment explanation
Indices: 47444672--47444977 Score: 506
Period size: 155 Copynumber: 2.0 Consensus size: 152
47444662 CTTAAGGCTT
*
47444672 GTTTAGAGTTTGAACCGAAATTGGAACTATATTGGACTCAAATTTCGGTAGGGGTGTGTTAGCTC
1 GTTTAGAGTTTGAACCGAAATTGGAACTATATTGGACTCAAATTTCGGTAGAGGTGTGTTAGCTC
* *
47444737 CTCTCGTTTTTTTTCCTCTCCACTTCTATTTTGTCAACATCCTTTATTACCTTTTTGCTACTGTA
66 CTCTCGTTTTTTTTCCTCTCCACTTCTATTTTGTCAACATCCATTATTACCTTTTTGCTACTATA
47444802 CCGAATACTACTAGGGACTTCA
131 CCGAATACTACTAGGGACTTCA
* *
47444824 GTTTAGAGTTTGAACCGAAATTGGAACTATCTTGGACTCAAATTTTGGTAGAGGTGTGTTAGCTC
1 GTTTAGAGTTTGAACCGAAATTGGAACTATATTGGACTCAAATTTCGGTAGAGGTGTGTTAGCTC
*
47444889 CTCATTTTCG-TTTTTTTCCTCTCCACTTCTATTTTGTCAACATCCATTATTACCTTTTTTCTAC
66 CTC----TCGTTTTTTTTCCTCTCCACTTCTATTTTGTCAACATCCATTATTACCTTTTTGCTAC
*
47444953 TATACCGAATACTGCTAGGGACTTC
127 TATACCGAATACTACTAGGGACTTC
47444978 GGGCTTTTAG
Statistics
Matches: 143, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
152 65 0.45
155 75 0.52
156 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (152 bp):
GTTTAGAGTTTGAACCGAAATTGGAACTATATTGGACTCAAATTTCGGTAGAGGTGTGTTAGCTC
CTCTCGTTTTTTTTCCTCTCCACTTCTATTTTGTCAACATCCATTATTACCTTTTTGCTACTATA
CCGAATACTACTAGGGACTTCA
Found at i:47445646 original size:27 final size:27
Alignment explanation
Indices: 47445612--47445758 Score: 133
Period size: 27 Copynumber: 5.4 Consensus size: 27
47445602 GCCAAAATGG
*
47445612 TGACCGAAA-ACCCCTTGTAAGGTAAAA
1 TGACCGAAATACCCC-TATAAGGTAAAA
*
47445639 TGACCGAAATACCCCTATAGGGTAAAA
1 TGACCGAAATACCCCTATAAGGTAAAA
* * **
47445666 TGACCCAAA-GCCCAC-ATAAAATAAAA
1 TGACCGAAATACCC-CTATAAGGTAAAA
*
47445692 TGACCGAAATACCCCT-TGTAGTGTAAAA
1 TGACCGAAATACCCCTAT-AAG-GTAAAA
* *
47445720 TGACTGAAATACCACC-ATAGGGTAAAA
1 TGACCGAAATACC-CCTATAAGGTAAAA
47445747 TGACCGAAATAC
1 TGACCGAAATAC
47445759 GCTGTAACAC
Statistics
Matches: 96, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
26 21 0.22
27 49 0.51
28 23 0.24
29 3 0.03
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.18
Consensus pattern (27 bp):
TGACCGAAATACCCCTATAAGGTAAAA
Found at i:47446547 original size:35 final size:35
Alignment explanation
Indices: 47446508--47446580 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
47446498 ACACATTCTT
47446508 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
47446543 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
47446578 TAT
1 TAT
47446581 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:47452472 original size:2 final size:2
Alignment explanation
Indices: 47452465--47452496 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
47452455 GCTCTTGCAC
47452465 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47452497 GTTTGCACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47453299 original size:40 final size:40
Alignment explanation
Indices: 47453200--47453390 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
47453190 TGGATGATAA
* * * * **
47453200 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
47453240 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
47453279 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
47453319 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
47453359 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
47453391 AGCTATATCC
Statistics
Matches: 136, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 32 0.24
40 102 0.75
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:47453414 original size:119 final size:119
Alignment explanation
Indices: 47453200--47453416 Score: 280
Period size: 119 Copynumber: 1.8 Consensus size: 119
47453190 TGGATGATAA
* * * *
47453200 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTTCCGGGCAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTGACTACTACCGGGCAAGTCCCGAAGGCATTTGA
*
47453265 GCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
66 GCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
47453319 CCGGGCTAAGTCCCGAAGGCAAT-TGTGCGAGTTACT-CTAACCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-ATCTGCGCGAGTGACTACT-ACCGGGC-AAGTCCCGAAGGCATT
* *
47453382 TGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
63 TGAGCGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
47453417 TACGTGATTT
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
118 1 0.01
119 52 0.62
120 31 0.37
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATCTGCGCGAGTGACTACTACCGGGCAAGTCCCGAAGGCATTTGA
GCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:47455438 original size:29 final size:28
Alignment explanation
Indices: 47455350--47455451 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
47455340 TACTCAATCA
* *
47455350 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
47455379 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
47455408 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
47455437 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
47455452 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:47459979 original size:29 final size:29
Alignment explanation
Indices: 47459946--47460019 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
47459936 GTGACGAGAT
47459946 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
47459975 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
47460004 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
47460020 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:47460035 original size:29 final size:29
Alignment explanation
Indices: 47460003--47460078 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
47459993 CTGGAAATAT
* *
47460003 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
47460032 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
47460061 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
47460079 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Done.