Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 158 of 425
Found at i:48069137 original size:6 final size:6
Alignment explanation
Indices: 48069107--48069293 Score: 159
Period size: 6 Copynumber: 30.3 Consensus size: 6
48069097 AAGAAACATT
* *
48069107 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
48069154 GTGACAGA ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
48069205 ATCAGT ATCAGA TAACAGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA
1 ATCAGA ATCAGA -ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
48069256 A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA AT
48069294 GTGAATGCAA
Statistics
Matches: 146, Mismatches: 20, Indels: 30
0.74 0.10 0.15
Matches are distributed among these distances:
5 8 0.05
6 116 0.79
7 16 0.11
8 6 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:48069164 original size:25 final size:24
Alignment explanation
Indices: 48069107--48069293 Score: 159
Period size: 25 Copynumber: 7.6 Consensus size: 24
48069097 AAGAAACATT
* *
48069107 ATCAGAA-CTAGAATCAAAATGAGA
1 ATCAGAATC-AGAATCAGAATCAGA
48069131 ATCAGAATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGAATCAGA
* *
48069154 GTGACAGAATCAAAATCAGAATCAGA
1 AT--CAGAATCAGAATCAGAATCAGA
*
48069180 ATCAGAATTAGGTAA-CAGAATCAGA
1 ATCAGAATCA-G-AATCAGAATCAGA
* *
48069205 ATCAGTATCAGATAACAGAATCAGA
1 ATCAGAATCAGA-ATCAGAATCAGA
* *
48069230 ATCAGAACCAGAATCAGAATTAGGTA
1 ATCAGAATCAGAATCAGAATCA-G-A
*
48069256 A-CAGAATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCAGAATCA-G-A
48069281 A-CAGAATCAGAAT
1 ATCAGAATCAGAAT
48069294 GTGAATGCAA
Statistics
Matches: 137, Mismatches: 16, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
23 2 0.01
24 36 0.26
25 94 0.69
26 5 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (24 bp):
ATCAGAATCAGAATCAGAATCAGA
Found at i:48069173 original size:37 final size:37
Alignment explanation
Indices: 48069130--48069249 Score: 145
Period size: 37 Copynumber: 3.2 Consensus size: 37
48069120 TCAAAATGAG
*
48069130 AATCAGAATCAGAATCAGAATCAGGTGACAGAATCAA
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
* *
48069167 AATCAGAATCAGAATCAGAATTAGGTAACAGAATCAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
* * * *
48069204 AATCAGTATCAGATAACAGAATCA-G-AATCAGAACCAG
1 AATCAGAATCAGA-ATCAGAATCAGGTAA-CAGAATCAA
48069241 AATCAGAAT
1 AATCAGAAT
48069250 TAGGTAACAG
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
36 2 0.03
37 63 0.86
38 8 0.11
ACGTcount: A:0.49, C:0.16, G:0.17, T:0.17
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAGAATCAA
Found at i:48069215 original size:62 final size:62
Alignment explanation
Indices: 48069139--48069293 Score: 61
Period size: 62 Copynumber: 2.5 Consensus size: 62
48069129 GAATCAGAAT
* * * * * * *
48069139 CAGAATCAGAATCAGGTGACAGAATCAAAATCAGAATCA-G-AATCAGAATTAGGTAA-CAGAAT
1 CAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAA-CAGAATCA--AAATCAGAAC
* * * * * * * *
48069201 CAGAATCAGTATCAGATAACAGAATCAGAATCAGAACCA-G-AATCAGAATTAGGTAA-CAGAAT
1 CAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAA-CAGAATCA--AAATCAGAAC
* *
48069263 CAGAATCAGTATCAGGTAACAGAATCAGAAT
1 CAGAATCAGAATTAGGTAACAGAATCAGAAT
48069294 GTGAATGCAA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 87 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (62 bp):
CAGAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAAC
Found at i:48069290 original size:19 final size:19
Alignment explanation
Indices: 48069139--48069271 Score: 130
Period size: 19 Copynumber: 6.8 Consensus size: 19
48069129 GAATCAGAAT
*
48069139 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
*
48069158 CAGAATCAAAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
48069175 TCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
48069195 CAGAATCAGAATCAGTATCAGATAA
1 CAGAATCAGAATCAG-----G-TAA
48069220 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
48069237 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
48069257 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
48069272 TATCAGGTAA
Statistics
Matches: 95, Mismatches: 7, Indels: 24
0.75 0.06 0.19
Matches are distributed among these distances:
17 3 0.03
18 26 0.27
19 44 0.46
20 4 0.04
24 1 0.01
25 17 0.18
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:48069769 original size:27 final size:27
Alignment explanation
Indices: 48069739--48069963 Score: 206
Period size: 27 Copynumber: 8.3 Consensus size: 27
48069729 GGGGTAAAAT
* *
48069739 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * **
48069766 GGTAATTCTACCTTACAAGAATATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
** * * *
48069793 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
48069820 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * *
48069847 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
48069874 AGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
48069901 GGT-ATTTCTACCCTA-TAGGAGTATTTC
1 GGTAATTT-TACCCTACAAGG-GTATTTC
48069928 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
**
48069955 AATAATTTT
1 GGTAATTTT
48069964 TAAATTGAGG
Statistics
Matches: 161, Mismatches: 31, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
26 9 0.06
27 142 0.88
28 10 0.06
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:48069962 original size:81 final size:81
Alignment explanation
Indices: 48069743--48069963 Score: 320
Period size: 81 Copynumber: 2.7 Consensus size: 81
48069733 TAAAATGGTA
* * * ** *
48069743 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCTTACAAGAATATTTCAATAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTTTACCCT
48069807 ATAGGGGTATTTCGGT
66 ATAGGGGTATTTCGGT
* * *
48069823 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTTTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTTTACCCT
48069888 ATAGGGGTATTTCGGT
66 ATAGGGGTATTTCGGT
* *
48069904 ATTTCTACCCTA-TAGGAGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAATAATTTT
1 ATTTCTACCCTACAAGG-GTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTTT
48069964 TAAATTGAGG
Statistics
Matches: 125, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
80 7 0.06
81 118 0.94
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTTTACCCT
ATAGGGGTATTTCGGT
Found at i:48070030 original size:27 final size:26
Alignment explanation
Indices: 48070009--48070232 Score: 112
Period size: 27 Copynumber: 8.3 Consensus size: 26
48069999 GGGTACTTTG
*
48070009 GTAATTTTACAAGTCGATGGTATTTCA
1 GTAATTTTACAAGTC-AGGGTATTTCA
* *
48070036 ATAATTTTACAGGTCAAGGGTATTTCA
1 GTAATTTTACAAGTC-AGGGTATTTCA
* * **
48070063 GTAATTTCACAAATCAGGGGTATTTTG
1 GTAATTTTACAAGTCA-GGGTATTTCA
* *
48070090 GTAATTTTACAA-ACTAGGGGTATTT-T
1 GTAATTTTACAAGTC-A-GGGTATTTCA
** **
48070116 GATAATTTTACAAACCAGGGGTATTTTG
1 G-TAATTTTACAAGTCA-GGGTATTTCA
* **
48070144 GTAATTTTACAA-ACTAGGGGTATTTTG
1 GTAATTTTACAAGTC-A-GGGTATTTCA
* ** *
48070171 GTAATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAGTC-AGGGTATTTCA
** **
48070198 GTAATTTTACAAACCAGAGGTATTTTG
1 GTAATTTTACAAGTCAG-GGTATTTCA
48070225 GTAATTTT
1 GTAATTTT
48070233 GTAAACCAAG
Statistics
Matches: 167, Mismatches: 22, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
26 6 0.04
27 157 0.94
28 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAAGTCAGGGTATTTCA
Found at i:48070095 original size:54 final size:54
Alignment explanation
Indices: 48069997--48070285 Score: 312
Period size: 54 Copynumber: 5.4 Consensus size: 54
48069987 TCTGTAAATC
* ** * * *** **
48069997 AAGGGTACTTTGGTAATTTTACAAGTCGATGGTATTTCAATAATTTTAC-AGGT
1 AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACT
** * * *
48070050 CAAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACT
1 -AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACT
* * *
48070105 AGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACT
* * *
48070159 AGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC-
1 AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACT
* ** *
48070212 CAGAGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACC
1 AAG-GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACT
*
48070267 AGGGGTATTTTGGTAATTT
1 AAGGGTATTTTGGTAATTT
48070286 GGTAAACTAA
Statistics
Matches: 203, Mismatches: 29, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
53 1 0.00
54 199 0.98
55 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (54 bp):
AAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACT
Found at i:48070112 original size:81 final size:80
Alignment explanation
Indices: 48069992--48070277 Score: 315
Period size: 81 Copynumber: 3.5 Consensus size: 80
48069982 GTAATTCTGT
* ** * * **
48069992 AAATCAAGGGTACTTTGGTAATTTTACAAGTC-GATGGTATTTCAATAATTTTACAGGTCAAGGG
1 AAATCAAGGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTAATAATTTTACA-AACAAGGG
** *
48070056 TATTTCAGTAATTTCAC
64 TATTTTGGTAATTTTAC
* * * *
48070073 AAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGT
1 AAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAATAATTTTACAAA-CAAGGGT
48070138 ATTTTGGTAATTTTAC
65 ATTTTGGTAATTTTAC
* * * * *
48070154 AAA-CTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGAGG
1 AAATC-AAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAATAATTTTACAAACAAG-GG
**
48070218 TATTTTGGTAATTTTGT
64 TATTTTGGTAATTTTAC
*
48070235 AAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
1 AAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTT
48070278 GGTAATTTGG
Statistics
Matches: 174, Mismatches: 26, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
80 3 0.02
81 169 0.97
82 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (80 bp):
AAATCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAATAATTTTACAAACAAGGGTA
TTTTGGTAATTTTAC
Found at i:48070292 original size:27 final size:27
Alignment explanation
Indices: 48070053--48070285 Score: 340
Period size: 27 Copynumber: 8.6 Consensus size: 27
48070043 TACAGGTCAA
** * *
48070053 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
48070080 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
48070107 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
48070134 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
48070161 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
48070188 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
48070215 AGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
48070242 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
48070269 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
48070286 GGTAAACTAA
Statistics
Matches: 182, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 182 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:48077398 original size:40 final size:39
Alignment explanation
Indices: 48077343--48077507 Score: 188
Period size: 40 Copynumber: 4.2 Consensus size: 39
48077333 ATGATACCCG
* * * *
48077343 GGCTAAGCCCCGAAGGCACTTATGCTAG-TGATTATATCC
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCC
48077382 AGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
1 -GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
* *
48077422 GAGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCC
1 G-GCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
* * ** *
48077462 GGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC
1 -GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
48077502 GGCTAA
1 GGCTAA
48077508 ATTCCGAAGA
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 6 0.06
40 99 0.92
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
GGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC
Found at i:48081651 original size:43 final size:43
Alignment explanation
Indices: 48081514--48081677 Score: 183
Period size: 43 Copynumber: 3.8 Consensus size: 43
48081504 ATAGTATTTC
* ** *
48081514 CGATATGTGATTTTGTGTAAGACTATGTCTGGGAC-GTTGGCAT
1 CGATATTTGATTTCATGTAAGACCATGTCTGGGACAG-TGGCAT
*
48081557 CGAT-TTTAGATTTACATGTACGACCATGTCTGGGACA-TCGGCAT
1 CGATATTT-GATTT-CATGTAAGACCATGTCTGGGACAGT-GGCAT
*
48081601 CG-TATTTGATTTCATGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATTTGATTTCATGTAAGACCATGTCTGGGACAGTGGCAT
* * *
48081643 CGATATTTGATTACATGTAAGACCACGTTTGGGAC
1 CGATATTTGATTTCATGTAAGACCATGTCTGGGAC
48081678 GTTGGCGTTG
Statistics
Matches: 103, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
42 30 0.29
43 45 0.44
44 28 0.27
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.34
Consensus pattern (43 bp):
CGATATTTGATTTCATGTAAGACCATGTCTGGGACAGTGGCAT
Found at i:48089099 original size:25 final size:25
Alignment explanation
Indices: 48089070--48089117 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
48089060 TTATAATATG
* * *
48089070 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
48089095 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
48089118 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:48089186 original size:20 final size:20
Alignment explanation
Indices: 48089161--48089219 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
48089151 TAAATATGGT
48089161 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
48089181 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
48089201 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
48089220 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:48089201 original size:11 final size:11
Alignment explanation
Indices: 48089165--48089219 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
48089155 TATGGTATGT
48089165 ATGATATGCAC
1 ATGATATGCAC
* *
48089176 ATGAAATG--T
1 ATGATATGCAC
48089185 ATGATATGCAC
1 ATGATATGCAC
*
48089196 ATGATATG--T
1 ATGATATGCAC
48089205 ATGATATGCAC
1 ATGATATGCAC
48089216 ATGA
1 ATGA
48089220 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:48089297 original size:24 final size:24
Alignment explanation
Indices: 48089270--48089434 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
48089260 GAGGAAGTGA
48089270 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
48089294 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
48089318 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
48089342 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
48089365 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* *
48089388 GAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
48089411 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
48089435 ATGATAAAGC
Statistics
Matches: 133, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
22 11 0.08
23 37 0.28
24 77 0.58
25 8 0.06
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:48089679 original size:30 final size:31
Alignment explanation
Indices: 48089626--48089688 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 31
48089616 CGTTTACAGT
48089626 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
48089657 AAAGGCTTCGG-CCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
48089687 AA
1 AA
48089689 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 20 0.65
31 11 0.35
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:48094002 original size:29 final size:29
Alignment explanation
Indices: 48093932--48094065 Score: 94
Period size: 29 Copynumber: 4.7 Consensus size: 29
48093922 ATACTCGATT
* * *
48093932 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATACAATTCAAGC
** ** *
48093961 -CGCACACACAGTGCCATACCCTTCGAGC
1 TCGCACACTTAGTGCCATACAATTCAAGC
* * *
48093989 TCGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATACAATTCAAGC
* * *
48094018 AT-GCACACTTAGTGCCATATATTTCCAGC
1 -TCGCACACTTAGTGCCATACAATTCAAGC
*
48094047 AT-GCACACTCAGTGCCATA
1 -TCGCACACTTAGTGCCATA
48094066 TTTTTCCAGC
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
28 21 0.24
29 67 0.75
30 1 0.01
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATACAATTCAAGC
Found at i:48094066 original size:29 final size:29
Alignment explanation
Indices: 48093991--48094088 Score: 178
Period size: 29 Copynumber: 3.4 Consensus size: 29
48093981 CTTCGAGCTC
48093991 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
48094020 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
* *
48094049 GCACACTCAGTGCCATATTTTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
48094078 GCACACTTAGT
1 GCACACTTAGT
48094089 ACCAATCTCG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.31
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:48100271 original size:18 final size:18
Alignment explanation
Indices: 48100245--48100291 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
48100235 GGCTAAGTAG
48100245 GGCCCATTAGGGGTTTTA
1 GGCCCATTAGGGGTTTTA
*
48100263 GGCCTATTAGGGGTTTTA
1 GGCCCATTAGGGGTTTTA
48100281 GGCCCATTAGG
1 GGCCCATTAGG
48100292 TGTCAGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.17, C:0.17, G:0.34, T:0.32
Consensus pattern (18 bp):
GGCCCATTAGGGGTTTTA
Found at i:48104869 original size:27 final size:26
Alignment explanation
Indices: 48104831--48105018 Score: 169
Period size: 27 Copynumber: 7.0 Consensus size: 26
48104821 GTTAAGACCT
*
48104831 CGATTTATAAAATTACCGAAATATCCC
1 CGATTTGTAAAATTACCGAAATA-CCC
48104858 CGATTTGTAAAATTACCGAAATACCC
1 CGATTTGTAAAATTACCGAAATACCC
* * ** *
48104884 CTAATTTGTGAAATTATTGAAATACCAT
1 C-GATTTGTAAAATTACCGAAATACC-C
* *
48104912 TGATTTGTAAAATTATCGAAATACCC
1 CGATTTGTAAAATTACCGAAATACCC
** * *
48104938 TTAATTTTTGAAATTACCGAAATACCC
1 -CGATTTGTAAAATTACCGAAATACCC
* *
48104965 CTATTTGTAAAATTACCAAAATACCC
1 CGATTTGTAAAATTACCGAAATACCC
* * * *
48104991 CCAGTTTGTAAAATGACCGTAATGCCC
1 CGA-TTTGTAAAATTACCGAAATACCC
48105018 C
1 C
48105019 TGTAGGGTAA
Statistics
Matches: 132, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 27 0.20
27 105 0.80
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (26 bp):
CGATTTGTAAAATTACCGAAATACCC
Found at i:48105019 original size:53 final size:53
Alignment explanation
Indices: 48104840--48105019 Score: 207
Period size: 54 Copynumber: 3.4 Consensus size: 53
48104830 TCGATTTATA
*
48104840 AAATTACCGAAATATCCCCGATTTGTAAAATTACCGAAATACCCCTAATTTGTG
1 AAATTACCGAAATA-CCCCTATTTGTAAAATTACCGAAATACCCCTAATTTGTG
** ** * * *
48104894 AAATTATTGAAATACCATTGATTTGTAAAATTATCGAAATACCCTTAATTTTTG
1 AAATTACCGAAATACCCCT-ATTTGTAAAATTACCGAAATACCCCTAATTTGTG
* * * *
48104948 AAATTACCGAAATACCCCTATTTGTAAAATTACCAAAATACCCCCAGTTTGTA
1 AAATTACCGAAATACCCCTATTTGTAAAATTACCGAAATACCCCTAATTTGTG
* * *
48105001 AAATGACCGTAATGCCCCT
1 AAATTACCGAAATACCCCT
48105020 GTAGGGTAAA
Statistics
Matches: 103, Mismatches: 22, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
53 45 0.44
54 58 0.56
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.32
Consensus pattern (53 bp):
AAATTACCGAAATACCCCTATTTGTAAAATTACCGAAATACCCCTAATTTGTG
Found at i:48105028 original size:27 final size:27
Alignment explanation
Indices: 48104998--48105194 Score: 263
Period size: 27 Copynumber: 7.4 Consensus size: 27
48104988 CCCCCAGTTT
48104998 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
*
48105025 GTAAAATGACCGTAATGCCCCTGTAGA
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
48105052 GTAAAATAACCGTAATGCCCCTGTAAG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* ** * *
48105079 GTAAAATAACCGTAATAACCTTGTAAG
1 GTAAAATGACCGTAATGCCCCTGTAGG
*
48105106 GTAAAATGATCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
48105133 GTAAAATGATCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
48105160 GTAAAAT-ACCGTAATACCCCTGTA-T
1 GTAAAATGACCGTAATGCCCCTGTAGG
48105185 GTAAAATGAC
1 GTAAAATGAC
48105195 GATTATGACC
Statistics
Matches: 153, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
25 7 0.05
26 18 0.12
27 128 0.84
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GTAAAATGACCGTAATGCCCCTGTAGG
Found at i:48105392 original size:27 final size:27
Alignment explanation
Indices: 48105335--48105412 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
48105325 GAAAGTGCTG
* * **
48105335 TACTGGTGACTATGTCAC-ATTCACTGT
1 TACTGGTGGCTATGCCACAATT-ACTAA
48105362 TACTGGTGGCTATGCCACAATTACTAA
1 TACTGGTGGCTATGCCACAATTACTAA
* *
48105389 TACTGGTGGCT-TACCACATTTACT
1 TACTGGTGGCTATGCCACAATTACT
48105413 GTTTCTGGCA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 11 0.25
27 30 0.68
28 3 0.07
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTAA
Found at i:48105412 original size:26 final size:27
Alignment explanation
Indices: 48105362--48105412 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
48105352 CATTCACTGT
*
48105362 TACTGGTGGCTATGCCACAATTACTAA
1 TACTGGTGGCTATACCACAATTACTAA
*
48105389 TACTGGTGGCT-TACCACATTTACT
1 TACTGGTGGCTATACCACAATTACT
48105413 GTTTCTGGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (27 bp):
TACTGGTGGCTATACCACAATTACTAA
Found at i:48105614 original size:33 final size:33
Alignment explanation
Indices: 48105565--48105654 Score: 99
Period size: 33 Copynumber: 2.7 Consensus size: 33
48105555 ACTCTTGCTA
* * * *
48105565 TATAAGGCTAAAGCCCAAACTGTTCTGTTACTG
1 TATAGGGCTAAGGCCCAGACTGTTCTGATACTG
* *
48105598 TATAGGGCTAAGGCCCAGACTGTACTGATATTG
1 TATAGGGCTAAGGCCCAGACTGTTCTGATACTG
* * *
48105631 GATAGGGCTCAGGCCTAGACTGTT
1 TATAGGGCTAAGGCCCAGACTGTT
48105655 ACTGCATGCT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (33 bp):
TATAGGGCTAAGGCCCAGACTGTTCTGATACTG
Found at i:48106274 original size:13 final size:13
Alignment explanation
Indices: 48106258--48106285 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
48106248 AATGCAAGGG
48106258 TATAATGGTAAAC
1 TATAATGGTAAAC
48106271 TATAATGGTAAAC
1 TATAATGGTAAAC
48106284 TA
1 TA
48106286 GTTATTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.07, G:0.14, T:0.32
Consensus pattern (13 bp):
TATAATGGTAAAC
Found at i:48107243 original size:21 final size:21
Alignment explanation
Indices: 48107217--48107259 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
48107207 TTTGAGATTT
48107217 ATGTGTAAGACCATGTCTGGA
1 ATGTGTAAGACCATGTCTGGA
48107238 ATGTGTAAGACCATGTCTGGA
1 ATGTGTAAGACCATGTCTGGA
48107259 A
1 A
48107260 CATTGGCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (21 bp):
ATGTGTAAGACCATGTCTGGA
Found at i:48107299 original size:42 final size:43
Alignment explanation
Indices: 48107240--48107344 Score: 140
Period size: 42 Copynumber: 2.4 Consensus size: 43
48107230 TGTCTGGAAT
* *
48107240 GTGTAAGACCATGTCTGGAACATTGGCATC-ATATTTGATTTC
1 GTGTAAGACCATGTCTGGAACAGTGGCATCGATATTTGATTAC
* *
48107282 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGAACAGTGGCATCGATATTTGATTAC
* *
48107325 ATGTAAGACCACGTCATGGA
1 GTGTAAGACCATGTC-TGGA
48107345 CGTTGGCATT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 27 0.51
43 23 0.43
44 3 0.06
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGAACAGTGGCATCGATATTTGATTAC
Found at i:48107352 original size:43 final size:41
Alignment explanation
Indices: 48107241--48107353 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 41
48107231 GTCTGGAATG
* * * *
48107241 TGTAAGACCATGTCTGGAACATTGGCATCATATTTGATTTCG
1 TGTAAGACCACGTCTGG-ACGTTGGCATCATATTTGATTACA
48107283 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCT-GGAC-GTTGGCATC-ATATTTGATTACA
48107326 TGTAAGACCACGTCATGGACGTTGGCAT
1 TGTAAGACCACGTC-TGGACGTTGGCAT
48107354 TGTACGAGCT
Statistics
Matches: 60, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
42 23 0.38
43 35 0.58
44 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGACGTTGGCATCATATTTGATTACA
Found at i:48119165 original size:27 final size:27
Alignment explanation
Indices: 48119115--48119174 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
48119105 AGCTGCCAGA
*
48119115 AACAGTAAATGTGGCAAAGCCACCAAT
1 AACAGTAAATGTGACAAAGCCACCAAT
* * * *
48119142 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGTAAATGTGACAAAGCCACCAAT
48119169 -ACAGTA
1 AACAGTA
48119175 CTTCCTCTAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (27 bp):
AACAGTAAATGTGACAAAGCCACCAAT
Found at i:48119361 original size:27 final size:27
Alignment explanation
Indices: 48119331--48119642 Score: 330
Period size: 27 Copynumber: 11.6 Consensus size: 27
48119321 ATATAGGGGT
* *
48119331 ATTACGATCTTTTTACCCTACAAGGGC
1 ATTACGGTCATTTTACCCTACAAGGGC
* *
48119358 ATTACAGT-ATTTT-CCACTACAGGGGC
1 ATTACGGTCATTTTACC-CTACAAGGGC
* *
48119384 ATTTCGGTCATTTTACCCTA-TAGAGGC
1 ATTACGGTCATTTTACCCTACAAG-GGC
*
48119411 ATTACAGTCATTTTACCCTAC-AGAGGC
1 ATTACGGTCATTTTACCCTACAAG-GGC
48119438 ATTACGGTCATTTTACCCTAC-AGAGGC
1 ATTACGGTCATTTTACCCTACAAG-GGC
* * * * *
48119465 GTTACAGTCATTTTACACTACAGGGGT
1 ATTACGGTCATTTTACCCTACAAGGGC
* * *
48119492 ATTACGGTCATTTTGCCCTATAGGGGC
1 ATTACGGTCATTTTACCCTACAAGGGC
* * *
48119519 ATTATGGTCATTTTAACCTGC-AGGGC
1 ATTACGGTCATTTTACCCTACAAGGGC
* * *
48119545 ATTACGGTTATTTTACCCTATAGGGGC
1 ATTACGGTCATTTTACCCTACAAGGGC
*
48119572 ATTACGGTCATTTTACCCTACAAGAGC
1 ATTACGGTCATTTTACCCTACAAGGGC
* *
48119599 ATTACGGTTATTTTACCCTACAGGGGC
1 ATTACGGTCATTTTACCCTACAAGGGC
48119626 ATTACGGTCATTTTACC
1 ATTACGGTCATTTTACC
48119643 TTTTTTGGGG
Statistics
Matches: 236, Mismatches: 42, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
25 2 0.01
26 40 0.17
27 191 0.81
28 3 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (27 bp):
ATTACGGTCATTTTACCCTACAAGGGC
Found at i:48119603 original size:107 final size:108
Alignment explanation
Indices: 48119331--48119640 Score: 401
Period size: 107 Copynumber: 2.9 Consensus size: 108
48119321 ATATAGGGGT
* * * *
48119331 ATTACGATCTTTTTACCCTACAAGGGCATTACAGT-ATTTT-CCACTACAGGGGCATTTCGGTCA
1 ATTACGGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACC-CTACAGGGGCATTACGGTCA
* * *
48119394 TTTTACCCTATAGAGGCATTACAGTCATTTTACCCTACAGAGGC
65 TTTTACCCTATAGGGGCATTACGGTCATTTTAACCTACAGAGGC
* * * *
48119438 ATTACGGTCATTTTACCCTACAGAGGCGTTACAGTCATTTTACACTACAGGGGTATTACGGTCAT
1 ATTACGGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCCTACAGGGGCATTACGGTCAT
* * *
48119503 TTTGCCCTATAGGGGCATTATGGTCATTTTAACCTGCAG-GGC
66 TTTACCCTATAGGGGCATTACGGTCATTTTAACCTACAGAGGC
* * * * * *
48119545 ATTACGGTTATTTTACCCTATAGGGGCATTACGGTCATTTTACCCTACAAGAGCATTACGGTTAT
1 ATTACGGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCCTACAGGGGCATTACGGTCAT
*
48119610 TTTACCCTACAGGGGCATTACGGTCATTTTA
66 TTTACCCTATAGGGGCATTACGGTCATTTTA
48119641 CCTTTTTTGG
Statistics
Matches: 174, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
107 116 0.67
108 57 0.33
109 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (108 bp):
ATTACGGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCCTACAGGGGCATTACGGTCAT
TTTACCCTATAGGGGCATTACGGTCATTTTAACCTACAGAGGC
Found at i:48124642 original size:46 final size:46
Alignment explanation
Indices: 48124589--48124764 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
48124579 TATTTGGGCA
48124589 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
48124635 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
48124682 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
48124728 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48124765 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:48124744 original size:93 final size:93
Alignment explanation
Indices: 48124585--48124756 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
48124575 GGGATATTTG
* *
48124585 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
48124650 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
48124678 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
48124743 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
48124757 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:48127743 original size:15 final size:15
Alignment explanation
Indices: 48127704--48127774 Score: 83
Period size: 15 Copynumber: 4.8 Consensus size: 15
48127694 GTATCTTGGG
*
48127704 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
48127719 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
48127734 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
48127748 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
48127763 TTTCTTTATTCT
1 TTTCTTTATTCT
48127775 TTTCTTGTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 9 0.20
15 33 0.72
16 2 0.04
ACGTcount: A:0.11, C:0.18, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:48127767 original size:29 final size:30
Alignment explanation
Indices: 48127695--48127774 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 30
48127685 CATAGTATCG
* * *
48127695 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
48127725 TAT-TCTGGATTTCTTTATTC-GGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
48127754 TATCTTGGATTTCTTTATTCT
1 TATCTTGGATTTCTTTATTCT
48127775 TTTCTTGTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
29 25 0.60
30 17 0.40
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:48130189 original size:46 final size:46
Alignment explanation
Indices: 48130136--48130262 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
48130126 TATTTGGGCA
*
48130136 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
48130182 TCCGAACTCGTTGAG-TGAGTCCGAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCG-AGTTCACTTATGGATGCGAACG
* *
48130228 CCCGAGCTCGTT--GTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48130263 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
44 14 0.18
45 16 0.21
46 46 0.61
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:48133239 original size:15 final size:15
Alignment explanation
Indices: 48133200--48133279 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
48133190 GTATCTTGGG
*
48133200 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
48133215 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
48133230 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
48133245 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
48133260 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
48133274 TTTCTT
1 TTTCTT
48133280 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:48133269 original size:30 final size:30
Alignment explanation
Indices: 48133191--48133278 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
48133181 CATAGTATCG
* * *
48133191 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
48133221 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
48133251 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
48133279 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:48135710 original size:46 final size:46
Alignment explanation
Indices: 48135657--48135785 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
48135647 TATTTGGGCA
*
48135657 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
48135703 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
48135749 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48135786 GCGGGTTACA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:48139291 original size:15 final size:15
Alignment explanation
Indices: 48139273--48139307 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
48139263 GTGAACTTAC
48139273 CTCCCATTAACTACT
1 CTCCCATTAACTACT
*
48139288 CTCCCATTAACTTCT
1 CTCCCATTAACTACT
48139303 CTCCC
1 CTCCC
48139308 TGACCATGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.20, C:0.46, G:0.00, T:0.34
Consensus pattern (15 bp):
CTCCCATTAACTACT
Found at i:48142376 original size:40 final size:40
Alignment explanation
Indices: 48142317--48142534 Score: 264
Period size: 40 Copynumber: 5.5 Consensus size: 40
48142307 TGGATGATAA
* *
48142317 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-TAT
* *
48142357 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
48142397 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATAT
* *
48142437 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * * *
48142477 CTGGGCTATGTCCCGAAGGCATTCGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
* * *
48142517 -CTGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48142535 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 16 0.10
40 140 0.89
41 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:48160623 original size:43 final size:45
Alignment explanation
Indices: 48160528--48160678 Score: 107
Period size: 43 Copynumber: 3.4 Consensus size: 45
48160518 AGATGTGATT
* * * * * *
48160528 ACATGTAAGACCATGTTTGGGACATTGGCATTG-TATAGAGATT-
1 ACATGTAAGACCATGTCTGGAACAGTGGCATCGATATATATATTA
** * * *
48160571 ATGTATAAGACCATGTCTGGAACATTGGCATCGTTA-ATCA-ATT-
1 ACATGTAAGACCATGTCTGGAACAGTGGCATCGATATAT-ATATTA
* * *
48160614 TCATGTAAGAACC-TGGCTGGGACAGTGGCATCGATATATATATTA
1 ACATGTAAG-ACCATGTCTGGAACAGTGGCATCGATATATATATTA
*
48160659 ACATGTAAGACCATATCTGG
1 ACATGTAAGACCATGTCTGG
48160679 GATATGGCAT
Statistics
Matches: 83, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
43 56 0.67
44 14 0.17
45 13 0.16
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (45 bp):
ACATGTAAGACCATGTCTGGAACAGTGGCATCGATATATATATTA
Found at i:48161384 original size:23 final size:24
Alignment explanation
Indices: 48161340--48161384 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
48161330 TGGTATATTA
*
48161340 TGGTATGATTTGAGGATGATGAAC
1 TGGTATGATTTGAGGAAGATGAAC
48161364 TGGTATG-TTTGA-GAAGCATGA
1 TGGTATGATTTGAGGAAG-ATGA
48161385 TTTGTGTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 3 0.16
23 9 0.47
24 7 0.37
ACGTcount: A:0.29, C:0.04, G:0.33, T:0.33
Consensus pattern (24 bp):
TGGTATGATTTGAGGAAGATGAAC
Found at i:48166247 original size:46 final size:46
Alignment explanation
Indices: 48166103--48166316 Score: 206
Period size: 46 Copynumber: 4.6 Consensus size: 46
48166093 TTTGTGTGCT
* * *
48166103 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGAGAGCC
* * * * * **
48166149 AGTGTAAAACCATGTCTAGGG-CATGGCATCGGCATTGAGACGAGAGAT
1 AGTGTAAGA-CATGTCT-GGGACAT-GCATCAGCCTCGAGATGAGAGCC
48166197 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATG-AGAGCC
* *
48166243 AGTGTAAGACATGTCTGGGACATGCATCAG-CTACGAGAT--GTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGAGAGCC
48166287 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
48166317 GACACGTATA
Statistics
Matches: 141, Mismatches: 17, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 67 0.48
47 21 0.15
48 25 0.18
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGAGAGCC
Found at i:48166344 original size:48 final size:46
Alignment explanation
Indices: 48166197--48166368 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 46
48166187 GACGAGAGAT
* *
48166197 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCT-CGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CTACGAGAGGT--GTC
*
48166243 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTACGAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGAGGTGTC
48166287 AGTGTAAGACCATGTCTGGGACATGGCATC-GAC-ACGTATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CTACG---AGAGGTGTC
*
48166335 AGTGTAAGACCAAGTCTGGTGACATGGCATCAGC
1 AGTGTAAGACCATGTCTGG-GACATGGCATCAGC
48166369 CGGATGTGTA
Statistics
Matches: 114, Mismatches: 3, Indels: 15
0.86 0.02 0.11
Matches are distributed among these distances:
44 11 0.10
45 20 0.18
46 44 0.39
48 26 0.23
49 12 0.11
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCTACGAGAGGTGTC
Found at i:48168599 original size:16 final size:16
Alignment explanation
Indices: 48168578--48168620 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
48168568 CCCAACTTTT
48168578 GGCTTTTCAGCATTTC
1 GGCTTTTCAGCATTTC
48168594 GGCTTTTCAGCATTTC
1 GGCTTTTCAGCATTTC
*
48168610 GGCATTTCAGC
1 GGCTTTTCAGC
48168621 TTTTTCTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.14, C:0.26, G:0.21, T:0.40
Consensus pattern (16 bp):
GGCTTTTCAGCATTTC
Found at i:48170227 original size:40 final size:40
Alignment explanation
Indices: 48170183--48170265 Score: 141
Period size: 40 Copynumber: 2.1 Consensus size: 40
48170173 GCTGACAGTT
*
48170183 TAGGGCAATT-CTGGATCCTATGCTTCATAGATCCACAAGC
1 TAGGGCAATTCCT-GATCCTATGCTCCATAGATCCACAAGC
48170223 TAGGGCAATTCCTGATCCTATGCTCCATAGATCCACAAGC
1 TAGGGCAATTCCTGATCCTATGCTCCATAGATCCACAAGC
48170263 TAG
1 TAG
48170266 ACAAGCTCCC
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 39 0.95
41 2 0.05
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (40 bp):
TAGGGCAATTCCTGATCCTATGCTCCATAGATCCACAAGC
Found at i:48189516 original size:46 final size:45
Alignment explanation
Indices: 48189466--48189637 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
48189456 GGTTGAGCAC
48189466 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGT
* * * *
48189512 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--T
* * *
48189559 CCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGTGAACGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGT
*
48189605 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48189638 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGT
Found at i:48191265 original size:28 final size:29
Alignment explanation
Indices: 48191198--48191298 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
48191188 ATAGTGAATC
*
48191198 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
48191227 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
48191255 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
48191285 CGCACACTTAGTGC
1 CGCACACTTAGTGC
48191299 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:48199344 original size:28 final size:29
Alignment explanation
Indices: 48199277--48199377 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
48199267 ATAGTGAATC
*
48199277 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
48199306 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
48199334 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
48199364 CGCACACTTAGTGC
1 CGCACACTTAGTGC
48199378 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:48203760 original size:29 final size:30
Alignment explanation
Indices: 48203697--48203814 Score: 115
Period size: 29 Copynumber: 4.1 Consensus size: 30
48203687 ACATACATGC
* * *
48203697 ATATGGCCTA-CTAGGCCCAA-TCTTATTC
1 ATATGGCCCATCTAGGCCCAATTCATATTT
* *
48203725 AAATGGCCCATCT-GGCCCAGTTCATATTCT
1 ATATGGCCCATCTAGGCCCAATTCATATT-T
*
48203755 -TATGGCCCA-CTAGGCCCAATTCACATTT
1 ATATGGCCCATCTAGGCCCAATTCATATTT
*
48203783 ATATGGCCCAT-TAGGCCCAAATCATA-TT
1 ATATGGCCCATCTAGGCCCAATTCATATTT
48203811 ATAT
1 ATAT
48203815 TCATACTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
28 23 0.31
29 51 0.69
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (30 bp):
ATATGGCCCATCTAGGCCCAATTCATATTT
Found at i:48203808 original size:58 final size:57
Alignment explanation
Indices: 48203698--48203810 Score: 138
Period size: 58 Copynumber: 2.0 Consensus size: 57
48203688 CATACATGCA
* ** **
48203698 TATGGCCTACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
* *
48203755 TATGGCCCACTAGGCCCAATTCACATTTATATGGCCCAT-TAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCACATTCAAATGGCCCATCT-GGCCCAAATCATATT
48203811 ATATTCATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
57 19 0.40
58 28 0.60
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
Found at i:48206475 original size:30 final size:30
Alignment explanation
Indices: 48206439--48206497 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
48206429 ATTTAATACG
*
48206439 AACTTTTACAAAATTACATTTTTGCCCCTA
1 AACTTTTACAAAATTACACTTTTGCCCCTA
* *
48206469 AACTTTTGCATAATTACACTTTTGCCCCT
1 AACTTTTACAAAATTACACTTTTGCCCCT
48206498 GGGCTCGAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACACTTTTGCCCCTA
Found at i:48209719 original size:71 final size:71
Alignment explanation
Indices: 48209633--48209796 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48209623 CGATTTGTCT
48209633 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48209698 CTTTCA
66 CTTTCA
48209704 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48209769 CTTTCA
66 CTTTCA
48209775 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
48209797 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:48209834 original size:71 final size:69
Alignment explanation
Indices: 48209633--48209830 Score: 247
Period size: 71 Copynumber: 2.8 Consensus size: 69
48209623 CGATTTGTCT
* * * *
48209633 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACATCACAT-G-ATCACACATGCGACCTAGCTACATTTAT
48209698 CTTTCA
64 CTTTCA
* * * *
48209704 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACATCACAT-G-ATCACACATGCGACCTAGCTACATTTAT
48209769 CTTTCA
64 CTTTCA
* *
48209775 CGTAGCTCTCTTGTCTACATGG-GATACATCTCAT-ATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATCACATGATCACACATGCGACCTAGCTAC
48209831 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 20 0.17
70 1 0.01
71 99 0.82
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (69 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATCACATGATCACACATGCGACCTAGCTACATTTATCT
TTCA
Found at i:48210849 original size:21 final size:20
Alignment explanation
Indices: 48210823--48210861 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
48210813 ATTATAATAA
48210823 CCACACAGGCGTGTTGCCCAT
1 CCACACAGGCGTG-TGCCCAT
*
48210844 CCACACGGGCGTGTGCCC
1 CCACACAGGCGTGTGCCC
48210862 TATTTCAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.15, C:0.41, G:0.28, T:0.15
Consensus pattern (20 bp):
CCACACAGGCGTGTGCCCAT
Found at i:48228837 original size:71 final size:71
Alignment explanation
Indices: 48228751--48228914 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48228741 CGATTTGTCT
48228751 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48228816 CTTTCA
66 CTTTCA
48228822 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
48228887 CTTTCA
66 CTTTCA
48228893 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
48228915 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:48228952 original size:71 final size:70
Alignment explanation
Indices: 48228751--48228948 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
48228741 CGATTTGTCT
* * * *
48228751 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
48228816 CTTTCA
65 CTTTCA
* * * *
48228822 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
48228887 CTTTCA
65 CTTTCA
* *
48228893 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
48228949 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:48230793 original size:43 final size:43
Alignment explanation
Indices: 48230746--48230830 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
48230736 GGGTTTAAGG
* * * *
48230746 TTTA-GGTGTTAGGGGTTAAGGGTTAGAGGTTCATGGTTTAGAA
1 TTTAGGGT-TTAGGAGTTAAGGATTAGAAGTTCAGGGTTTAGAA
* *
48230789 TTTAGGGTTTAGGATTTAAGGATTAGAAGTTTAGGGTTTAGA
1 TTTAGGGTTTAGGAGTTAAGGATTAGAAGTTCAGGGTTTAGA
48230831 TTAATTAGTG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 32 0.91
44 3 0.09
ACGTcount: A:0.26, C:0.01, G:0.34, T:0.39
Consensus pattern (43 bp):
TTTAGGGTTTAGGAGTTAAGGATTAGAAGTTCAGGGTTTAGAA
Found at i:48230829 original size:15 final size:14
Alignment explanation
Indices: 48230780--48230830 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
48230770 AGAGGTTCAT
48230780 GGTTTAGAATTTAG
1 GGTTTAGAATTTAG
* *
48230794 GGTTTAGGATTTAA
1 GGTTTAGAATTTAG
*
48230808 GGATTAGAAGTTTAG
1 GGTTTAGAA-TTTAG
48230823 GGTTTAGA
1 GGTTTAGA
48230831 TTAATTAGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
14 19 0.63
15 11 0.37
ACGTcount: A:0.29, C:0.00, G:0.31, T:0.39
Consensus pattern (14 bp):
GGTTTAGAATTTAG
Found at i:48230943 original size:14 final size:14
Alignment explanation
Indices: 48230924--48231024 Score: 71
Period size: 14 Copynumber: 7.1 Consensus size: 14
48230914 TTAATTATCA
48230924 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
48230938 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
48230952 ATATTA-TTTAGGGT
1 TTA-TAGTTTAGGGT
* * *
48230966 TTAAAGTGTATGAG-
1 TTATAGTTTA-GGGT
* *
48230980 TTACTATTTTAAGGT
1 TTA-TAGTTTAGGGT
* * *
48230995 TTATGGATTATGGT
1 TTATAGTTTAGGGT
48231009 TTATAGTTTAAGGGT
1 TTATAGTTT-AGGGT
48231024 T
1 T
48231025 GGGGTTTAAG
Statistics
Matches: 64, Mismatches: 17, Indels: 11
0.70 0.18 0.12
Matches are distributed among these distances:
13 1 0.02
14 47 0.73
15 16 0.25
ACGTcount: A:0.26, C:0.01, G:0.25, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:48231644 original size:14 final size:14
Alignment explanation
Indices: 48231605--48231645 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
48231595 AAAATGCTCA
*
48231605 AAAAATTAAAAATT
1 AAAAACTAAAAATT
*
48231619 AAAAATTAAAAATT
1 AAAAACTAAAAATT
48231633 AAAAAACTAAAAA
1 -AAAAACTAAAAA
48231646 AATAATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 14 0.56
15 11 0.44
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (14 bp):
AAAAACTAAAAATT
Found at i:48231644 original size:21 final size:21
Alignment explanation
Indices: 48231605--48231645 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
48231595 AAAATGCTCA
*
48231605 AAAAATTAAAAATTAAAAATT
1 AAAAATTAAAAACTAAAAATT
48231626 AAAAATTAAAAAACTAAAAA
1 AAAAATT-AAAAACTAAAAA
48231646 AATAATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (21 bp):
AAAAATTAAAAACTAAAAATT
Found at i:48231645 original size:7 final size:7
Alignment explanation
Indices: 48231605--48231637 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
48231595 AAAATGCTCA
48231605 AAAAATT
1 AAAAATT
48231612 AAAAATT
1 AAAAATT
48231619 AAAAATT
1 AAAAATT
48231626 AAAAATT
1 AAAAATT
48231633 AAAAA
1 AAAAA
48231638 ACTAAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAAATT
Found at i:48235211 original size:40 final size:40
Alignment explanation
Indices: 48235103--48235312 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
48235093 CGGGATTTAA
* * * * *
48235103 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
48235143 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48235183 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48235223 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48235263 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48235303 CCGGATATAT
1 CCGGATATAT
48235313 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:48243346 original size:40 final size:40
Alignment explanation
Indices: 48243238--48243447 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
48243228 CGGGATTTAA
* * * * *
48243238 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
48243278 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48243318 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48243358 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48243398 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
48243438 CCGGATATAT
1 CCGGATATAT
48243448 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:48245733 original size:40 final size:41
Alignment explanation
Indices: 48245689--48245815 Score: 133
Period size: 40 Copynumber: 3.2 Consensus size: 41
48245679 GGAATCATAA
* *
48245689 CCCGGATTGGAATGCACT-GCAC-AAAGCCTTCGGGTCTTAG
1 CCCGGATTAGAAT-AACTCGCACGAAAGCCTTCGGGTCTTAG
*
48245729 CCCGGA-TAGAATAACTCGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATTAGAATAACTCGCACGAAAGCCTTCGGGTCTTAG
*
48245769 CCCGGA-T---ATACACTCAGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATTAGAATA-ACTC-GCACGAAAGCCTTCGGGTCTTAG
48245808 ACCCGGAT
1 -CCCGGAT
48245816 ATAATTCCAG
Statistics
Matches: 78, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
37 3 0.04
38 7 0.09
39 32 0.41
40 36 0.46
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (41 bp):
CCCGGATTAGAATAACTCGCACGAAAGCCTTCGGGTCTTAG
Found at i:48245800 original size:39 final size:37
Alignment explanation
Indices: 48245714--48245819 Score: 158
Period size: 40 Copynumber: 2.7 Consensus size: 37
48245704 ACTGCACAAA
48245714 GCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGAT---ATAACTCGCACGAAT
48245754 GCCTTCGGGTCTTAGCCCGGATATACACTCAGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATA-ACTC-GCACGAAT
48245793 GCCTTCGGGTCTTAGACCCGGATATAA
1 GCCTTCGGGTCTTAG-CCCGGATATAA
48245820 TTCCAGCATA
Statistics
Matches: 63, Mismatches: 0, Indels: 7
0.90 0.00 0.10
Matches are distributed among these distances:
37 3 0.05
38 4 0.06
39 24 0.38
40 32 0.51
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (37 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTCGCACGAAT
Found at i:48253584 original size:38 final size:38
Alignment explanation
Indices: 48253489--48253640 Score: 225
Period size: 38 Copynumber: 3.9 Consensus size: 38
48253479 CCCGGATTTG
* *
48253489 ACTGCACAAAGGCCTTCGGGTCTTAGCCCGGATAATATCA
1 ACTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-ATA-CA
48253529 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATACA
1 ACT-GCACGAATGCCTTCGGGTCTTAGCCCGGATATACA
*
48253568 ACTGCACGAATGCCTTCGGGTCTTAGCCCGGATATATA
1 ACTGCACGAATGCCTTCGGGTCTTAGCCCGGATATACA
*
48253606 ACTCCAGCGAATG-CTTCGGGTCTTAGCCCGGATAT
1 ACTGCA-CGAATGCCTTCGGGTCTTAGCCCGGATAT
48253641 CATTTCCAAT
Statistics
Matches: 106, Mismatches: 4, Indels: 6
0.91 0.03 0.05
Matches are distributed among these distances:
38 61 0.58
39 11 0.10
40 6 0.06
41 28 0.26
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (38 bp):
ACTGCACGAATGCCTTCGGGTCTTAGCCCGGATATACA
Found at i:48253587 original size:79 final size:76
Alignment explanation
Indices: 48253489--48253640 Score: 243
Period size: 79 Copynumber: 2.0 Consensus size: 76
48253479 CCCGGATTTG
48253489 ACTGCACAAAGGCCTTCGGGTCTTAGCCCGGATAATATCAACTCGCA-CGAATGCCTTCGGGTCT
1 ACTGCACAAAGGCCTTCGGGTCTTAGCCCGGAT-ATAT-AACTC-CAGCGAATG-CTTCGGGTCT
48253553 TAGCCCGGATATACA
62 TAGCCCGGATATACA
* *
48253568 ACTGCACGAATGCCTTCGGGTCTTAGCCCGGATATATAACTCCAGCGAATGCTTCGGGTCTTAGC
1 ACTGCACAAAGGCCTTCGGGTCTTAGCCCGGATATATAACTCCAGCGAATGCTTCGGGTCTTAGC
48253633 CCGGATAT
66 CCGGATAT
48253641 CATTTCCAAT
Statistics
Matches: 70, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
76 24 0.34
77 11 0.16
78 4 0.06
79 31 0.44
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (76 bp):
ACTGCACAAAGGCCTTCGGGTCTTAGCCCGGATATATAACTCCAGCGAATGCTTCGGGTCTTAGC
CCGGATATACA
Found at i:48262602 original size:17 final size:18
Alignment explanation
Indices: 48262560--48262608 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
48262550 AGTTGAAAAG
48262560 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
48262579 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
48262596 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
48262609 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:48263491 original size:40 final size:40
Alignment explanation
Indices: 48263425--48263591 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
48263415 AAATTGAATG
* * *
48263425 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
48263464 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
48263504 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
48263544 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
48263584 ATATCCGG
1 ATATCCGG
48263592 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:48265360 original size:40 final size:40
Alignment explanation
Indices: 48265303--48265488 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
48265293 TCGAATGATG
* * *
48265303 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
48265343 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
48265383 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
48265423 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
48265464 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
48265489 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48265495 original size:80 final size:79
Alignment explanation
Indices: 48265337--48265521 Score: 200
Period size: 80 Copynumber: 2.3 Consensus size: 79
48265327 GTGCTAAGTG
** *
48265337 ACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAG
1 ACTAAATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
**
48265402 GCATTTGTGCGAGTT
66 GCATTTGAACGAG-T
* *
48265417 ACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCG
1 ACTAAATCCGGGTTAAGAT-CCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCG
*
48265479 AAGGTATTTGAACGAGT
63 AAGGCATTTGAACGAGT
*
48265496 AGCTATATCC-GGTTAA-ACTCCGAAGG
1 A-CTAAATCCGGGTTAAGA-TCCGAAGG
48265522 TACGTGATTC
Statistics
Matches: 90, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
79 17 0.19
80 71 0.79
81 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (79 bp):
ACTAAATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAG
GCATTTGAACGAGT
Found at i:48268031 original size:2 final size:2
Alignment explanation
Indices: 48268024--48268059 Score: 63
Period size: 2 Copynumber: 17.5 Consensus size: 2
48268014 TACTTTTCTA
48268024 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT ACT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT A
48268060 ACATCCCGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 31 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:48283337 original size:25 final size:25
Alignment explanation
Indices: 48283303--48283357 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
48283293 GAAGTTACCC
*
48283303 GAAAGGGATAACATA-TGAAAAGGTT
1 GAAAAGGATAACA-ACTGAAAAGGTT
*
48283328 GAAAAGGATATCAACTGAAAAGGTT
1 GAAAAGGATAACAACTGAAAAGGTT
48283353 GAAAA
1 GAAAA
48283358 AGACGTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.51, C:0.05, G:0.25, T:0.18
Consensus pattern (25 bp):
GAAAAGGATAACAACTGAAAAGGTT
Found at i:48283430 original size:40 final size:40
Alignment explanation
Indices: 48283329--48283441 Score: 163
Period size: 41 Copynumber: 2.8 Consensus size: 40
48283319 GAAAAGGTTG
* * *
48283329 AAAAGGATATCAACTGAAAAGGTTGAAAAAGACGTTATTCA
1 AAAAGGATATCAA-TGAAAAGGTTGAAAAGGACATTATCCA
*
48283370 AAAAGGATATCAAATAAAAAGGTTGAAAAGGACATTATCCA
1 AAAAGGATATC-AATGAAAAGGTTGAAAAGGACATTATCCA
*
48283411 AATAGGATATCAATGAAAAGGTTGAAAAGGA
1 AAAAGGATATCAATGAAAAGGTTGAAAAGGA
48283442 TAGCAATGAA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
40 19 0.29
41 44 0.68
42 2 0.03
ACGTcount: A:0.51, C:0.08, G:0.20, T:0.20
Consensus pattern (40 bp):
AAAAGGATATCAATGAAAAGGTTGAAAAGGACATTATCCA
Found at i:48286319 original size:16 final size:16
Alignment explanation
Indices: 48286300--48286333 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
48286290 ATTATAATGG
* *
48286300 TAATATAATATAATAA
1 TAATAGAATAGAATAA
48286316 TAATAGAATAGAATAA
1 TAATAGAATAGAATAA
48286332 TA
1 TA
48286334 TTTTCTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (16 bp):
TAATAGAATAGAATAA
Found at i:48286380 original size:23 final size:23
Alignment explanation
Indices: 48286354--48286405 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
48286344 TAATAAGTAA
48286354 GTATATATATATGTATTACAAAT
1 GTATATATATATGTATTACAAAT
* * * *
48286377 GTATGTATGTATTTATTACACAT
1 GTATATATATATGTATTACAAAT
48286400 GTATAT
1 GTATAT
48286406 TACCATTACC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.37, C:0.06, G:0.12, T:0.46
Consensus pattern (23 bp):
GTATATATATATGTATTACAAAT
Found at i:48287722 original size:22 final size:22
Alignment explanation
Indices: 48287697--48287741 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
48287687 ATCACCAAAG
48287697 TGTTTGGATTTCATTTCATCAA
1 TGTTTGGATTTCATTTCATCAA
48287719 TGTTTGGATTTCATTTCATCAA
1 TGTTTGGATTTCATTTCATCAA
48287741 T
1 T
48287742 AATTTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.13, G:0.13, T:0.51
Consensus pattern (22 bp):
TGTTTGGATTTCATTTCATCAA
Found at i:48293518 original size:39 final size:39
Alignment explanation
Indices: 48293433--48293531 Score: 99
Period size: 39 Copynumber: 2.5 Consensus size: 39
48293423 CATATTCACT
* * * * *
48293433 TTTAAGCATATATCATATTACACATATAATCGCCTGACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
** * **
48293472 TACAAGCATATATCAGAATATTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
*
48293511 TTTAAGCATATGTCACAATAC
1 TTTAAGCATATATCACAATAC
48293532 TCGAAAACAT
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.31
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAATCACATAACA
Found at i:48295492 original size:51 final size:49
Alignment explanation
Indices: 48295362--48295556 Score: 255
Period size: 49 Copynumber: 3.9 Consensus size: 49
48295352 CCTATTGTGA
* * *
48295362 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
48295411 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * * *
48295461 CGATCACGTTTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
48295511 GGTCGCATGTGTAGTACTAAGTGCAGGCTCCTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
48295557 GCTTTGGCTA
Statistics
Matches: 125, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 80 0.64
50 4 0.03
51 41 0.33
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:48295537 original size:100 final size:100
Alignment explanation
Indices: 48295364--48295556 Score: 332
Period size: 100 Copynumber: 1.9 Consensus size: 100
48295354 TATTGTGAGG
*
48295364 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCACATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
*
48295429 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* * *
48295464 TCACGTTTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
*
48295529 AAGTGCAGGCTCCTATGCGTACCAGATA
66 AAGTGCAGGCTACTATGCGTACCAGATA
48295557 GCTTTGGCTA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:48300205 original size:40 final size:40
Alignment explanation
Indices: 48300104--48300288 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
48300094 TATTCGAATG
* * * *
48300104 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AGTGACT
* * * *
48300145 ATATCCGGACTAAGATCCGAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
48300185 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
*
48300225 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
48300264 CATATCCGGGCTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
48300289 CTTGTGCGAG
Statistics
Matches: 121, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 94 0.78
41 26 0.21
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:48308350 original size:39 final size:40
Alignment explanation
Indices: 48308244--48308427 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
48308234 TATTCGAATG
* * * *
48308244 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCT-AGTGACT
* * * *
48308285 ATATCCGGACTAAGATCCGAAGGCATTTATGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
48308325 ATATCCGGGCCAA-AACCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
48308364 ATATCCGGGCTAAGTCCCGAAGGTATTTATGCTAGTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
48308403 CATATCCGGGCTAAGACCCGAAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
48308428 CTTGTGCGAG
Statistics
Matches: 118, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 34 0.29
40 58 0.49
41 26 0.22
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:48308433 original size:79 final size:80
Alignment explanation
Indices: 48308244--48308466 Score: 240
Period size: 79 Copynumber: 2.8 Consensus size: 80
48308234 TATTCGAATG
* * * *
48308244 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAAGTGACTATATCCGGACTAAGAT-CCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTGACTATATCCGGGCTAAG-TCCCGAAGG
* *
48308308 CATTTATGCGAGTTACT
64 TATTTATGCGAGTGACT
* * *
48308325 ATATCCGGGCCAA-AACCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGTA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGTA
*
48308389 TTTATGCTAGTGA-T
66 TTTATGCGAGTGACT
* * ** * *
48308403 CATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTTATATCC-GGTTAAATCCCGAAGGT
1 -ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGT
48308466 A
65 A
48308467 CGTGATTCGG
Statistics
Matches: 120, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
78 18 0.15
79 66 0.55
80 24 0.20
81 12 0.10
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGTA
TTTATGCGAGTGACT
Found at i:48310613 original size:15 final size:17
Alignment explanation
Indices: 48310593--48310629 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
48310583 TTTATTGAAA
48310593 AAAATATAAAC-AT-AT
1 AAAATATAAACAATAAT
*
48310608 AAAATATTAACAATAAT
1 AAAATATAAACAATAAT
48310625 AAAAT
1 AAAAT
48310630 CTTAAACCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 10 0.53
16 2 0.11
17 7 0.37
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAATATAAACAATAAT
Found at i:48318449 original size:44 final size:43
Alignment explanation
Indices: 48318386--48318472 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 43
48318376 TCCTAATTGG
48318386 GAAAATAGTTCCCTTATTCTAATAAACTTACTAAAACATAAAAA
1 GAAAATAGTTCCCTTATTCTAATAAAC-TACTAAAACATAAAAA
* * *
48318430 GAAAATAGTTTCCTTATTCTAGTAAACTACTAAAAGATAAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAA
48318473 TATTTCTAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 15 0.38
44 25 0.62
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.30
Consensus pattern (43 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAA
Found at i:48323160 original size:44 final size:43
Alignment explanation
Indices: 48323110--48323196 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 43
48323100 TCCTAATTGG
48323110 GAAAATAGTTCCCTTATTCTAATAAACTTACTAAAACATAAAAA
1 GAAAATAGTTCCCTTATTCTAATAAAC-TACTAAAACATAAAAA
* *
48323154 GAAAATAGTTCCCTTATTCTAGTAAACTACTAAAAGATAAAAA
1 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAA
48323197 TATTTCTAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 15 0.37
44 26 0.63
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (43 bp):
GAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAAAA
Found at i:48323748 original size:13 final size:13
Alignment explanation
Indices: 48323730--48323754 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48323720 GTGCATATGA
48323730 TTTTCTTCTTTTT
1 TTTTCTTCTTTTT
48323743 TTTTCTTCTTTT
1 TTTTCTTCTTTT
48323755 AGCGGCTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTCTTCTTTTT
Found at i:48327484 original size:48 final size:48
Alignment explanation
Indices: 48327409--48327588 Score: 176
Period size: 48 Copynumber: 3.9 Consensus size: 48
48327399 AACATAGTAG
* * * *
48327409 GATGCCAATGCCATATCTCAGATATGGTTTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * * *
48327457 AATGCCAATGCCATGTCCCAGACATGGTTTTATATGGGATCTCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
** * *
48327505 GATG-C--TG--ATAG-CCCAG-CTATGGTCTTACATGAAATTACATATT
1 GATGCCAATGCCAT-GTCCCAGAC-ATGGTCTTACATGGGATCACATATC
*
48327548 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
48327589 GTACATAACC
Statistics
Matches: 105, Mismatches: 18, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.01
43 29 0.28
44 2 0.02
45 2 0.02
46 1 0.01
47 2 0.02
48 67 0.64
49 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:48327928 original size:31 final size:31
Alignment explanation
Indices: 48327893--48327954 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
48327883 AATTTCACTT
*
48327893 ATTTAATTATCACATTGTTTAAAATAGTCCA
1 ATTTAATTATCAAATTGTTTAAAATAGTCCA
48327924 ATTTAATTATCAAATTGTTTAAAATAGTCCA
1 ATTTAATTATCAAATTGTTTAAAATAGTCCA
48327955 TAAATCATAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.42
Consensus pattern (31 bp):
ATTTAATTATCAAATTGTTTAAAATAGTCCA
Found at i:48333727 original size:21 final size:21
Alignment explanation
Indices: 48333702--48333742 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
48333692 TTGGTTGTTT
48333702 TTCATATTATTCT-TATTTTCA
1 TTCATATTA-TCTATATTTTCA
*
48333723 TTCATTTTATCTATATTTTC
1 TTCATATTATCTATATTTTC
48333743 TTCTGATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.22, C:0.15, G:0.00, T:0.63
Consensus pattern (21 bp):
TTCATATTATCTATATTTTCA
Found at i:48336715 original size:25 final size:25
Alignment explanation
Indices: 48336682--48336751 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
48336672 CTCTTTTAAT
* *
48336682 AACTAGGGCAAAACCCTTTTTGATA
1 AACTGGGGCAAAACCCTTTTCGATA
*
48336707 AACTGGGGCAAAACCCTTTTCGGTA
1 AACTGGGGCAAAACCCTTTTCGATA
*
48336732 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAACCCTTTT
48336752 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAACCCTTTTCGATA
Found at i:48336986 original size:27 final size:27
Alignment explanation
Indices: 48336956--48337117 Score: 216
Period size: 27 Copynumber: 6.0 Consensus size: 27
48336946 AGGGCAAAAT
* * *
48336956 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
48336983 GGTAATTCTACCCTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
48337010 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
48337037 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
48337064 AGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
48337091 GGTAATTCTACCCTACAAGGGTTTTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
48337118 AATAGTTTTG
Statistics
Matches: 117, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:48337016 original size:54 final size:54
Alignment explanation
Indices: 48336957--48337118 Score: 243
Period size: 54 Copynumber: 3.0 Consensus size: 54
48336947 GGGCAAAATG
* * * *
48336957 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTGTTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
48337011 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * * *
48337065 GTAATTCTACCTTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTTTTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
48337119 ATAGTTTTGT
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 99 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:48337175 original size:27 final size:26
Alignment explanation
Indices: 48337145--48337558 Score: 283
Period size: 27 Copynumber: 15.3 Consensus size: 26
48337135 AGGATAAAAC
**
48337145 GGTAATTTTGTAAATTCGAGGTATTTT
1 GGTAATTTTACAAA-TCGAGGTATTTT
* *
48337172 GGTAATTTTTACAAGTCGAGGGTATTTC
1 GGTAA-TTTTACAAATCGA-GGTATTTT
* *
48337200 AGTAATTTTACAAATCGATGGTATTTC
1 GGTAATTTTACAAATCGA-GGTATTTT
* *
48337227 AGTAATTTTACAAA-CTGAGGGTATTTC
1 GGTAATTTTACAAATC-GA-GGTATTTT
* * *
48337254 GTTAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTACAAATC-GAGGTATTTT
* *
48337281 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATC-GAGGTATTTT
** * *
48337308 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGA-GGTATTTT
* * *
48337335 GGTAATTTTGCAAGTCAAGGGTATTTT
1 GGTAATTTTACAAATCGA-GGTATTTT
* * *
48337362 AGTAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTACAAATC-GAGGTATTTT
* *
48337389 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGA-GGTATTTT
* * * *
48337416 AGTAATTTCACAAATTAGGGGTATTTT
1 GGTAATTTTACAAA-TCGAGGTATTTT
* * *
48337443 GGTAATTTCACAAACTAGGGGTATTTT
1 GGTAATTTTACAAA-TCGAGGTATTTT
* *
48337470 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATC-GAGGTATTTT
* * * *
48337497 GGTAATTTTATAAACCAGGGGCA-TTT
1 GGTAATTTTACAAATC-GAGGTATTTT
* *
48337523 GAGTAATTTTACAAATTGAGGGCATTTT
1 G-GTAATTTTACAAATCGA-GGTATTTT
*
48337551 AGTAATTT
1 GGTAATTT
48337559 GGTAAACTAA
Statistics
Matches: 322, Mismatches: 53, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
26 7 0.02
27 291 0.90
28 24 0.07
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.39
Consensus pattern (26 bp):
GGTAATTTTACAAATCGAGGTATTTT
Found at i:48337517 original size:54 final size:54
Alignment explanation
Indices: 48337164--48337538 Score: 373
Period size: 54 Copynumber: 6.9 Consensus size: 54
48337154 GTAAATTCGA
** ** *
48337164 GGTATTTTGGTAATTTTTACAAGTC-GAGGGTATTTCAGTAATTTTACAAATC-GAT
1 GGTATTTTGGTAA-TTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAATCAG-G
** * * * *
48337219 GGTATTTCAGTAATTTTACAAA-CTGAGGGTATTTCGTTAATTTCACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAATCAGG
** * *
48337273 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCAGG
* ** * * *
48337327 GGTATTTTGGTAATTTTGCAAGTCAAGGGTATTTTAGTAATTTCACAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCAGG
** ** * *
48337381 GGTATTTTGGTAATTTTACAAGTC-GAGGGTATTTCAGTAATTTCACAAATTAGG
1 GGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAATCAGG
* * *
48337435 GGTATTTTGGTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCAGG
* *
48337489 GGTATTTTGGTAATTTTATAAACCAGGGGCA-TTTGAGTAATTTTACAAAT
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG-GTAATTTTACAAAT
48337539 TGAGGGCATT
Statistics
Matches: 269, Mismatches: 45, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
53 5 0.02
54 249 0.93
55 15 0.06
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCAGG
Found at i:48337558 original size:81 final size:82
Alignment explanation
Indices: 48337164--48337538 Score: 390
Period size: 81 Copynumber: 4.6 Consensus size: 82
48337154 GTAAATTCGA
* * * *
48337164 GGTATTTTGGTAATTTTTACAAGTC-GAGGGTATTTCAGTAATTTTACAAATC-GATGGTATTTC
1 GGTATTTTGGTAA-TTTTACAAATCAG-GGGTATTTGAGTAATTTTACAAATCAG-GGGTATTTT
* *
48337227 AGTAATTTTACAAA-CTGAG
63 GGTAATTTTACAAACCAGAG
* * * *
48337246 GGTATTTCGTTAATTTCACAAATCAGGGGTATTTTG-GTAATTTTACAAACCAGGGGTATTTTGG
1 GGTATTTTGGTAATTTTACAAATCAGGGGTA-TTTGAGTAATTTTACAAATCAGGGGTATTTTGG
**
48337310 TAATTTTGTAAACCA-AG
65 TAATTTTACAAACCAGAG
* * * * *
48337327 GGTATTTTGGTAATTTTGCAAGTCAAGGGTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTGAGTAATTTTACAAATCAGGGGTATTTTGGT
**
48337392 AATTTTACAAGTC-GAG
66 AATTTTACAAACCAGAG
** * * *
48337408 GGTATTTCAGTAATTTCACAAATTAGGGGTATTTTG-GTAATTTCACAAA-CTAGGGGTATTTTG
1 GGTATTTTGGTAATTTTACAAATCAGGGGTA-TTTGAGTAATTTTACAAATC-AGGGGTATTTTG
48337471 GTAATTTTACAAACCAG-G
64 GTAATTTTACAAACCAGAG
* * *
48337489 GGTATTTTGGTAATTTTATAAACCAGGGGCATTTGAGTAATTTTACAAAT
1 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTGAGTAATTTTACAAAT
48337539 TGAGGGCATT
Statistics
Matches: 239, Mismatches: 43, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
80 8 0.03
81 210 0.88
82 21 0.09
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (82 bp):
GGTATTTTGGTAATTTTACAAATCAGGGGTATTTGAGTAATTTTACAAATCAGGGGTATTTTGGT
AATTTTACAAACCAGAG
Found at i:48341484 original size:29 final size:29
Alignment explanation
Indices: 48341422--48341524 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
48341412 GTGACGAGAT
* * *
48341422 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
48341451 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
48341480 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
48341509 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48341525 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:48349336 original size:29 final size:29
Alignment explanation
Indices: 48349274--48349376 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
48349264 GTGACGAGAT
* * *
48349274 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
48349303 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * **
48349332 TGGCACTATGTGTGCGGGCTT-GAATCACG
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
48349361 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
48349377 TGATTGAGTA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
28 3 0.05
29 56 0.95
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:48356709 original size:28 final size:28
Alignment explanation
Indices: 48356663--48356731 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
48356653 TTTAAAACCC
*
48356663 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48356690 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
48356718 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
48356732 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:48359237 original size:49 final size:49
Alignment explanation
Indices: 48359168--48359780 Score: 736
Period size: 49 Copynumber: 12.1 Consensus size: 49
48359158 GTACATAATA
48359168 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
48359217 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
48359266 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* ***
48359315 ATATATGTGATAAGGCCTAAT-G--TATGTGATAAGGCCTAATG-GCCGATGTGAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGAT---G---AATGTGAAAATGT-AT
* * * * ** *
48359367 GAATGTGAAACTGTATATATATGTG-ATAA-GGCCTAATG-GCCGATGTGATGAATGTGAAAATG
1 --A--T-ATA-TGT-GATA-A-G-GCCTAATGGCC-GATGTGATGA-AT-------GTGAAAATG
48359429 TAT
47 TAT
* *
48359432 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
48359481 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
48359530 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
48359579 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
48359628 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
48359677 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
48359726 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
48359775 ATATAT
1 ATATAT
48359781 ATATATGTGG
Statistics
Matches: 501, Mismatches: 30, Indels: 66
0.84 0.05 0.11
Matches are distributed among these distances:
46 7 0.01
48 1 0.00
49 424 0.85
51 5 0.01
52 6 0.01
54 1 0.00
55 1 0.00
56 8 0.02
57 11 0.02
58 7 0.01
59 6 0.01
60 4 0.01
61 6 0.01
62 1 0.00
63 2 0.00
64 3 0.01
65 3 0.01
66 5 0.01
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:48359282 original size:98 final size:98
Alignment explanation
Indices: 48359168--48359780 Score: 829
Period size: 98 Copynumber: 6.1 Consensus size: 98
48359158 GTACATAATA
48359168 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
* *
48359233 CTAATGGCCGATGTGATGAATGTGAAACTGTAT
66 CTAATGGCCGACGTGATGAATGTGAAAGTGTAT
48359266 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
* * * * *
48359331 CTAATGTATG-TGATAAGGCCTAATGGCCGATGTGATGAA-TGTGAA
66 CTAATG---GCCG---A--CGTGAT-G--AATGTGA--AAGTGT-AT
* * * * *
48359376 ACTGTATAT-ATATGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATG
1 A-TATATGTGATAAG-GCCTAA---T----GGCCGATGTGATGAATGTGAAAATGTATATATATG
48359439 TGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
57 TGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
* *
48359481 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
48359546 CTAATGGCCGACGTGATGAATGTGAAAGTGTAT
66 CTAATGGCCGACGTGATGAATGTGAAAGTGTAT
* *
48359579 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
* *
48359644 CTAATGGCCGATGTGATGAATGTGAAACTGTAT
66 CTAATGGCCGACGTGATGAATGTGAAAGTGTAT
48359677 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
48359742 CTAATGGCCGACGTGATGAATGTGAAAGTGTAT
66 CTAATGGCCGACGTGATGAATGTGAAAGTGTAT
48359775 ATATAT
1 ATATAT
48359781 ATATATGTGG
Statistics
Matches: 459, Mismatches: 29, Indels: 54
0.85 0.05 0.10
Matches are distributed among these distances:
98 342 0.75
100 1 0.00
101 1 0.00
103 1 0.00
104 6 0.01
105 14 0.03
106 4 0.01
107 6 0.01
108 6 0.01
109 4 0.01
110 15 0.03
111 6 0.01
112 1 0.00
114 1 0.00
115 1 0.00
117 50 0.11
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.30
Consensus pattern (98 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
CTAATGGCCGACGTGATGAATGTGAAAGTGTAT
Found at i:48359342 original size:19 final size:19
Alignment explanation
Indices: 48359318--48359355 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
48359308 AATGTATATA
48359318 TATGTGATAAGGCCTAATG
1 TATGTGATAAGGCCTAATG
48359337 TATGTGATAAGGCCTAATG
1 TATGTGATAAGGCCTAATG
48359356 GCCGATGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32
Consensus pattern (19 bp):
TATGTGATAAGGCCTAATG
Found at i:48359346 original size:68 final size:68
Alignment explanation
Indices: 48359269--48359404 Score: 263
Period size: 68 Copynumber: 2.0 Consensus size: 68
48359259 ACTGTATATA
48359269 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTA
48359334 ATG
66 ATG
*
48359337 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTA
48359402 ATG
66 ATG
48359405 GCCGATGTGA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (68 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTA
ATG
Found at i:48359358 original size:117 final size:117
Alignment explanation
Indices: 48359220--48359453 Score: 468
Period size: 117 Copynumber: 2.0 Consensus size: 117
48359210 AATGTATATA
48359220 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
48359285 ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATG
66 ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATG
48359337 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
48359402 ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATG
66 ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATG
48359454 GCCGACGTGA
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 117 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.31
Consensus pattern (117 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATG
Found at i:48359445 original size:166 final size:166
Alignment explanation
Indices: 48359166--48359502 Score: 629
Period size: 166 Copynumber: 2.0 Consensus size: 166
48359156 CTGTACATAA
*
48359166 TAATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAG
1 TAATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAG
* *
48359231 GCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTAATGGCCGATGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGT
48359296 GATGAATGTGAAAATGTATATATATGTGATAAGGCC
131 GATGAATGTGAAAATGTATATATATGTGATAAGGCC
*
48359332 TAATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAG
1 TAATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAG
48359397 GCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGT
66 GCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGT
*
48359462 GATGAATGTGAAAGTGTATATATATGTGATAAGGCC
131 GATGAATGTGAAAATGTATATATATGTGATAAGGCC
48359498 TAATG
1 TAATG
48359503 GCCGACGTGA
Statistics
Matches: 166, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
166 166 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (166 bp):
TAATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAG
GCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGT
GATGAATGTGAAAATGTATATATATGTGATAAGGCC
Found at i:48359513 original size:147 final size:147
Alignment explanation
Indices: 48359337--48359780 Score: 852
Period size: 147 Copynumber: 3.0 Consensus size: 147
48359327 AGGCCTAATG
48359337 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
48359402 ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
66 ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
48359467 ATGTGAAAGTGTATATA
131 ATGTGAAAGTGTATATA
* *
48359484 TATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
* *
48359549 ATGGCCGACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
66 ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
48359614 ATGTGAAAGTGTATATA
131 ATGTGAAAGTGTATATA
48359631 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
48359696 ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
66 ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
48359761 ATGTGAAAGTGTATATA
131 ATGTGAAAGTGTATATA
48359778 TAT
1 TAT
48359781 ATATATGTGG
Statistics
Matches: 289, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
147 289 1.00
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.30
Consensus pattern (147 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGA
ATGTGAAAGTGTATATA
Found at i:48359908 original size:37 final size:36
Alignment explanation
Indices: 48359853--48359939 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
48359843 AACTTAGAAA
*
48359853 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGAAGAT
48359891 TATGTCCGGGTACGACCCGATGACTACGTGTGAAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGAAGAT
48359928 TATGTCCGGGTA
1 TATGTCCGGGTA
48359940 AGACTTTGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGAAGAT
Found at i:48364198 original size:30 final size:30
Alignment explanation
Indices: 48364090--48364210 Score: 154
Period size: 30 Copynumber: 4.0 Consensus size: 30
48364080 ATGAGCATCT
* *
48364090 ATGAAAAGGGATGGTTTCAACCATTGATTA
1 ATGAAAAGGGATGGTTTCGACCATCGATTA
*
48364120 ATGAAAAGGGATGGTTTTTG-CCATCGATTA
1 ATGAAAAGGGATGG-TTTCGACCATCGATTA
* *
48364150 ATGAAAAAGGATGGTTTCGACCATCGTTTA
1 ATGAAAAGGGATGGTTTCGACCATCGATTA
* * *
48364180 AGGAAAAGGGATGGTTTCGACTATCGTTTA
1 ATGAAAAGGGATGGTTTCGACCATCGATTA
48364210 A
1 A
48364211 CACACTTTGT
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 4 0.05
30 73 0.91
31 3 0.04
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.31
Consensus pattern (30 bp):
ATGAAAAGGGATGGTTTCGACCATCGATTA
Found at i:48367707 original size:25 final size:25
Alignment explanation
Indices: 48367679--48367748 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
48367669 CTCTTTTAAT
*
48367679 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
48367704 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
48367729 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
48367749 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:48367981 original size:27 final size:27
Alignment explanation
Indices: 48367951--48368197 Score: 377
Period size: 27 Copynumber: 9.1 Consensus size: 27
48367941 GGGGCAAAAT
* * * *
48367951 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
48367978 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48368005 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
48368032 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48368059 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48368086 GGTAATTCTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48368113 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48368140 GGTAATTCTACTCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48368167 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
48368194 GGTA
1 GGTA
48368198 TTTTACAAAT
Statistics
Matches: 198, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 198 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:48368244 original size:27 final size:26
Alignment explanation
Indices: 48368185--48368336 Score: 162
Period size: 27 Copynumber: 5.7 Consensus size: 26
48368175 TACCCTACAG
* *
48368185 GGGTATTTCGGT-ATTTTACAAATCAA
1 GGGTATTTTGGTAATTTTACAAA-CTA
*
48368211 CGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAACTA
*
48368237 GGGATATTTTGGTAATTTTACAAACCA
1 GGG-TATTTTGGTAATTTTACAAACTA
* * *
48368264 GGGGTATTTTGGTAATTTTACTGATCGA
1 -GGGTATTTTGGTAATTTTAC-AAACTA
**
48368292 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACT-A
*
48368319 GGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
48368337 GTAAATCGAG
Statistics
Matches: 107, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
26 16 0.15
27 85 0.79
28 6 0.06
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACTA
Found at i:48368271 original size:54 final size:54
Alignment explanation
Indices: 48368185--48368350 Score: 185
Period size: 54 Copynumber: 3.1 Consensus size: 54
48368175 TACCCTACAG
* * * *
48368185 GGGTATTTCGGT-ATTTTACAAATCAACGGTATTTTGGTAATTTTAC-AAACTA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAAACGA
* * *
48368237 GGGATATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCGA
1 GGG-TATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAAACGA
** * * *
48368292 GGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTAGTAATTTT-GTAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAAA-CGA
48368346 GGGTA
1 GGGTA
48368351 AAGCGGTAAT
Statistics
Matches: 95, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
52 3 0.03
53 10 0.11
54 76 0.80
55 6 0.06
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTAAACGA
Found at i:48368307 original size:81 final size:80
Alignment explanation
Indices: 48368156--48368336 Score: 213
Period size: 81 Copynumber: 2.2 Consensus size: 80
48368146 TCTACTCTAC
* * **
48368156 AAGGGTATTTCAGTAATTCTACCCTA-CAGGGGTATTTCGGTATTTTACAAATCAACGGTATTTT
1 AAGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTCGGTATTTTACAAATCAACGGTATTTT
48368220 GGTAATTTTACAAACT
65 GGTAATTTTACAAACT
* * ** * *
48368236 -AGGGATATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTT
1 AAGGG-TATTTTAGTAATTTTACAAACCAGGGGTATTTCGGT-ATTTTACAAATCAACGGTATTT
**
48368300 TGGTAATTTTGTAAACT
64 TGGTAATTTTACAAACT
48368317 AAGGGTATTTTAGTAATTTT
1 AAGGGTATTTTAGTAATTTT
48368337 GTAAATCGAG
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
79 6 0.07
80 27 0.32
81 47 0.56
82 4 0.05
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (80 bp):
AAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTCGGTATTTTACAAATCAACGGTATTTTG
GTAATTTTACAAACT
Found at i:48368348 original size:27 final size:26
Alignment explanation
Indices: 48368185--48368533 Score: 160
Period size: 27 Copynumber: 13.3 Consensus size: 26
48368175 TACCCTACAG
* * *
48368185 GGGTATTTCGGT-ATTTTACAAATCAA
1 GGGTATTTTGGTAATTTTATAAA-CGA
* * *
48368211 CGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTATAAACGA
* *
48368237 GGGATATTTTGGTAATTTTACAAACCA
1 GGG-TATTTTGGTAATTTTATAAACGA
* *
48368264 GGGGTATTTTGGTAATTTTACTGATCGA
1 -GGGTATTTTGGTAATTTTA-TAAACGA
* *
48368292 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTATAAAC-GA
* *
48368319 GGGTATTTTAGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAA-CGA
**** *
48368346 GGGTAAAGCGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAA-CGA
*** *
48368373 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTATAAA-CGA
**** * *
48368400 GGGTAAAACGGTAATTTTGTAAATCAA
1 GGGTATTTTGGTAATTTTATAAA-CGA
*** *
48368427 GGGTAAAATGGTAATTCTAT---C--
1 GGGTATTTTGGTAATTTTATAAACGA
* * *
48368448 --TTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTATAAA-CGA
* *
48368473 GGATATTTGGGTAATTTTATAAATC--
1 GGGTATTTTGGTAATTTTATAAA-CGA
* *
48368498 GGGTACTTTGGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTATAAA-CGA
48368525 GGGTATTTT
1 GGGTATTTT
48368534 AGTCATTTGG
Statistics
Matches: 261, Mismatches: 46, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
19 11 0.04
23 2 0.01
25 21 0.08
26 17 0.07
27 203 0.78
28 7 0.03
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.38
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTATAAACGA
Done.