Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 16 of 425
Found at i:4356898 original size:115 final size:105
Alignment explanation
Indices: 4356767--4356993 Score: 296
Period size: 115 Copynumber: 2.1 Consensus size: 105
4356757 CATTTAAATA
*
4356767 TTTTAAAGATATGACCTTGT-AAATTTATTATTAGTTTTATAATATTTTAAATTTTAAATATTTT
1 TTTTAAAGATATGACCTT-TCAAATTTATTATTAGTTTTATAATATTTTAAA-TGT--ATATTTT
* *
4356831 AAATTTGTTTTATAATATTTTAAATATTCTTAATTTTTTTAAATATATT-AT
62 AAATAT-TTTTA-AA-ATTTTAAATA----TAATTTTTATAAAT-TATTAAT
*
4356882 TTTTAAAGATATGACCTTTCAAATTTATTATTTGTTTTATAATATTTTAAATGTATATTTTAAAT
1 TTTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATATTTTAAAT
4356947 ATTTTTAAAATTTTAAATATAATTTTTATAAATTATTAAT
66 ATTTTTAAAATTTTAAATATAATTTTTATAAATTATTAAT
4356987 TTTTAAA
1 TTTTAAA
4356994 CTAAATTTAA
Statistics
Matches: 106, Mismatches: 4, Indels: 14
0.85 0.03 0.11
Matches are distributed among these distances:
104 4 0.04
105 22 0.21
109 10 0.09
110 2 0.02
111 5 0.05
112 12 0.11
114 3 0.03
115 48 0.45
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.56
Consensus pattern (105 bp):
TTTTAAAGATATGACCTTTCAAATTTATTATTAGTTTTATAATATTTTAAATGTATATTTTAAAT
ATTTTTAAAATTTTAAATATAATTTTTATAAATTATTAAT
Found at i:4360397 original size:30 final size:30
Alignment explanation
Indices: 4360351--4360428 Score: 102
Period size: 30 Copynumber: 2.6 Consensus size: 30
4360341 CGGTGGTTGC
* * * *
4360351 TCTGGGTGAAATGAACTTGAACTGCCTATA
1 TCTGAGTGATATGAACTTGAACCGCCCATA
*
4360381 TCTGAGTGATATGAACTTGAACCGCCCATG
1 TCTGAGTGATATGAACTTGAACCGCCCATA
*
4360411 TCCGAGTGATATGAACTT
1 TCTGAGTGATATGAACTT
4360429 AAATTGCTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (30 bp):
TCTGAGTGATATGAACTTGAACCGCCCATA
Found at i:4360442 original size:30 final size:30
Alignment explanation
Indices: 4360356--4360457 Score: 89
Period size: 30 Copynumber: 3.4 Consensus size: 30
4360346 GTTGCTCTGG
* * * * * *
4360356 GTGAAATGAACTTGAACTGCCTATATCTGA
1 GTGATATGAACTTAAACCGCCAATGTCCGA
* *
4360386 GTGATATGAACTTGAACCGCCCATGTCCGA
1 GTGATATGAACTTAAACCGCCAATGTCCGA
** *
4360416 GTGATATGAACTTAAATTGCTAATGTCC-A
1 GTGATATGAACTTAAACCGCCAATGTCCGA
4360445 GGTGATATGAACT
1 -GTGATATGAACT
4360458 GCTCTGTGAC
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
29 1 0.02
30 60 0.98
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (30 bp):
GTGATATGAACTTAAACCGCCAATGTCCGA
Found at i:4361763 original size:26 final size:26
Alignment explanation
Indices: 4361726--4361861 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
4361716 TGATACAAAT
* *
4361726 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
4361752 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
4361778 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
4361804 TGATAATGGGTGAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
4361830 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
4361856 TGATAA
1 TGATAA
4361862 GAATATCATG
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:4366719 original size:26 final size:25
Alignment explanation
Indices: 4366680--4366815 Score: 209
Period size: 26 Copynumber: 5.2 Consensus size: 25
4366670 TGATACAAAT
*
4366680 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
4366706 TGATAATGGATTAGGTAAATGTTTCA
1 TGATAATGG-TTAGGTAAATGTTTCA
*
4366732 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
4366758 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
4366784 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAAT-GGTTAGGTAAATGTTTCA
4366810 TGATAA
1 TGATAA
4366816 GAATATCATG
Statistics
Matches: 104, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
25 2 0.02
26 100 0.96
27 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTTCA
Found at i:4366737 original size:52 final size:52
Alignment explanation
Indices: 4366680--4366815 Score: 245
Period size: 52 Copynumber: 2.6 Consensus size: 52
4366670 TGATACAAAT
4366680 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA
*
4366732 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA
* *
4366784 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAA
4366816 GAATATCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 81 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATGGATTAGGTAAATGTTTCA
Found at i:4370824 original size:21 final size:21
Alignment explanation
Indices: 4370769--4370826 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
4370759 TGACAAGTTA
4370769 TAATATATAT-TTTTAATTTT
1 TAATATATATATTTTAATTTT
* * *
4370789 TAA-ATTTAAATTTTTACTTTT
1 TAATATATATA-TTTTAATTTT
4370810 TAATATATATATTTTAA
1 TAATATATATATTTTAA
4370827 ATAAAGTCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
19 4 0.14
20 3 0.10
21 17 0.59
22 5 0.17
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TAATATATATATTTTAATTTT
Found at i:4370853 original size:22 final size:20
Alignment explanation
Indices: 4370825--4370871 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 20
4370815 TATATATTTT
4370825 AAATAAAGTCATATTTTTTAAC
1 AAATAAA-TCAT-TTTTTTAAC
*
4370847 AAATAAATCCTTTTTTTAAC
1 AAATAAATCATTTTTTTAAC
4370867 AAATA
1 AAATA
4370872 TTTTTTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 14 0.58
21 3 0.12
22 7 0.29
ACGTcount: A:0.47, C:0.11, G:0.02, T:0.40
Consensus pattern (20 bp):
AAATAAATCATTTTTTTAAC
Found at i:4370876 original size:16 final size:18
Alignment explanation
Indices: 4370838--4370880 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
4370828 TAAAGTCATA
4370838 TTTTTTAACAAATAAATCCT
1 TTTTTTAACAAAT-AAT-CT
4370858 TTTTTTAACAAAT-AT-T
1 TTTTTTAACAAATAATCT
4370874 TTTTTTA
1 TTTTTTA
4370881 TTTTTTCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
18 2 0.09
20 13 0.57
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTTTAACAAATAATCT
Found at i:4370961 original size:22 final size:20
Alignment explanation
Indices: 4370932--4370976 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
4370922 ATTATTTTTT
4370932 AAAATTTTAAATAGAATTTAA
1 AAAATTTTAAATA-AATTTAA
* *
4370953 AAAAGTTTTGAATATATTTAA
1 AAAA-TTTTAAATAAATTTAA
4370974 AAA
1 AAA
4370977 TAATTTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.38
Consensus pattern (20 bp):
AAAATTTTAAATAAATTTAA
Found at i:4370995 original size:14 final size:14
Alignment explanation
Indices: 4370976--4371002 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4370966 ATATTTAAAA
4370976 ATAATTTAAAAATC
1 ATAATTTAAAAATC
4370990 ATAATTTAAAAAT
1 ATAATTTAAAAAT
4371003 TTATATGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (14 bp):
ATAATTTAAAAATC
Found at i:4371266 original size:27 final size:25
Alignment explanation
Indices: 4371210--4371259 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
4371200 AAATAAGGAC
*
4371210 AAATAAAAACTTAAAAAAAGTAAAT
1 AAATAAAAACTTAAAAAAAGAAAAT
*
4371235 AAATATAAACTTAAAAGAAAGAAAA
1 AAATAAAAACTTAAAA-AAAGAAAA
4371260 AGTAATAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.18
Consensus pattern (25 bp):
AAATAAAAACTTAAAAAAAGAAAAT
Found at i:4374732 original size:29 final size:29
Alignment explanation
Indices: 4374699--4374754 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
4374689 ATCGAGACTT
* *
4374699 GATCAAATTAATCCTTCTATTATTAAATG
1 GATCAAATTAATCCTTATACTATTAAATG
**
4374728 GATCAGTTTAATCCTTATACTATTAAA
1 GATCAAATTAATCCTTATACTATTAAA
4374755 AAAATCATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (29 bp):
GATCAAATTAATCCTTATACTATTAAATG
Found at i:4374761 original size:29 final size:29
Alignment explanation
Indices: 4374706--4374761 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
4374696 CTTGATCAAA
* * ***
4374706 TTAATCCTTCTATTATTAAATGGATCAGT
1 TTAATCCTTATACTATTAAAAAAATCAGT
4374735 TTAATCCTTATACTATTAAAAAAATCA
1 TTAATCCTTATACTATTAAAAAAATCA
4374762 TATCAAATTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.39, C:0.14, G:0.05, T:0.41
Consensus pattern (29 bp):
TTAATCCTTATACTATTAAAAAAATCAGT
Found at i:4376559 original size:23 final size:21
Alignment explanation
Indices: 4376508--4376567 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 21
4376498 TTATTATTAT
*
4376508 TTCTTTGTTCTGTTTCCTTGC
1 TTCTTTGTTCTGTTTACTTGC
*
4376529 -TCTATTGTCTCTGCTTTACTTTC
1 TTCT-TTGT-TCTG-TTTACTTGC
4376552 TTCTTTGTTCTTGTTT
1 TTCTTTGTTC-TGTTT
4376568 TGCAGGCCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
20 3 0.09
21 4 0.12
22 9 0.28
23 13 0.41
24 3 0.09
ACGTcount: A:0.03, C:0.22, G:0.12, T:0.63
Consensus pattern (21 bp):
TTCTTTGTTCTGTTTACTTGC
Found at i:4381112 original size:2 final size:2
Alignment explanation
Indices: 4381105--4381135 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4381095 ATGACTCGTG
4381105 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4381136 GAAAACTCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4383091 original size:5 final size:6
Alignment explanation
Indices: 4383074--4383098 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
4383064 GAGTATTAGG
4383074 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
4383099 CAATATTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:4383543 original size:15 final size:13
Alignment explanation
Indices: 4383511--4383577 Score: 50
Period size: 15 Copynumber: 5.1 Consensus size: 13
4383501 TACAAAGTTA
4383511 AAAATA-ATATAT
1 AAAATATATATAT
4383523 AAAATATATATAT
1 AAAATATATATAT
*
4383536 ACACAATATCTAT-T
1 A-A-AATATATATAT
* *
4383550 AAAAGA-ATATAC
1 AAAATATATATAT
4383562 ACATAATATATATAT
1 A-A-AATATATATAT
4383577 A
1 A
4383578 TATGCATGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
11 3 0.07
12 10 0.24
13 9 0.21
14 6 0.14
15 14 0.33
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.33
Consensus pattern (13 bp):
AAAATATATATAT
Found at i:4384152 original size:2 final size:2
Alignment explanation
Indices: 4384145--4384185 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
4384135 ATTATGAAAG
4384145 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4384186 ACATTAGAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4384400 original size:2 final size:2
Alignment explanation
Indices: 4384393--4384420 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4384383 GAAATTAATA
4384393 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4384421 TTCTTTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4386669 original size:130 final size:127
Alignment explanation
Indices: 4386482--4386989 Score: 482
Period size: 130 Copynumber: 3.9 Consensus size: 127
4386472 ACCTAAAGGA
* * * * ** * * *
4386482 ATATTTGATTGTTTTGACCAAACGAGAAATCACAACCTAGCACGATAGGGCATGATTCC-CGAAT
1 ATATTCGATTATTTTGAGCAAAC-ACAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAAT
* * * * * * * * *
4386546 CGTCAAACACCGAGTATTGCCTTCGTTTTAAGGGATTTTTAGAAGATACGAGTGAAATTTGAAGT
65 TGCCAAACATCAAAT-TTGACTTCGTTTTAAAGAATTTTTAGAAGA-ATGA-TGAAATTTGAAGT
4386611 G
127 G
* *
4386612 ATATTCGATTATTTTGAGCGAACACGAAATTGTAACCCAGCACGTTAGGGCACGATTCCGCGAAT
1 ATATTCGATTATTTTGAGCAAACAC-AAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAAT
** * *
4386677 TGCCAATTATCAAATTTCGTCTTCGTTTTAAAGAATTTTT-GAATGAATGATGAAATCTTGAAGG
65 TGCCAAACATCAAATTT-GACTTCGTTTTAAAGAATTTTTAGAA-GAATGATGAAAT-TTGAAGT
4386741 G
127 G
* * * **
4386742 ATATTTGATTATTTTGAGCAAACTCAGAATTGCAACCCAGCACGTTAGGGTACGATTCCATGAAT
1 ATATTCGATTATTTTGAGCAAACACA-AATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAAT
* * * *
4386807 TTCCAAATATCAAATTTTGACTTCATTTTAAAGAATTTTTAAAAGACATGAATGAAATTTTGAAG
65 TGCCAAACATCAAA-TTTGACTTCGTTTTAAAGAATTTTTAGAAGA-ATG-ATGAAA-TTTGAAG
4386872 TG
126 TG
* * * *
4386874 ATATTCGGTTATTTTGAGCAAACGCAAAATTGCAACTCAACACGTTAGGGCACGATTCCGCGAAT
1 ATATTCGATTATTTTGAGCAAACAC-AAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAAT
* * * *
4386939 TGCCAAACATCGAATGTCGTCTTCGTTTTGAAGAATTTTT-GAATGAATGAT
65 TGCCAAACATCAAAT-TTGACTTCGTTTTAAAGAATTTTTAGAA-GAATGAT
4386990 TATAAAGCTA
Statistics
Matches: 312, Mismatches: 52, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
129 8 0.03
130 153 0.49
131 48 0.15
132 101 0.32
133 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (127 bp):
ATATTCGATTATTTTGAGCAAACACAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATT
GCCAAACATCAAATTTGACTTCGTTTTAAAGAATTTTTAGAAGAATGATGAAATTTGAAGTG
Found at i:4386921 original size:132 final size:131
Alignment explanation
Indices: 4386566--4386988 Score: 517
Period size: 132 Copynumber: 3.2 Consensus size: 131
4386556 CGAGTATTGC
* * * * *
4386566 CTTCGTTTTAAGGGATTTTTAGAAGATACGAGTGAAA-TTTGAAGTGATATTCGATTATTTTGAG
1 CTTCGTTTTAAAGAATTTTTAAAAGA-ATGAATGAAATTTTGAAGTGATATTCGATTATTTTGAG
* * * *
4386630 CGAACACGAAATTGTAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAATTATCAAATTTC
65 CAAACACAAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAATTTC
4386695 GT
130 GT
* * * * *
4386697 CTTCGTTTTAAAGAATTTTTGAATGAATG-ATGAAATCTTGAAGGGATATTTGATTATTTTGAGC
1 CTTCGTTTTAAAGAATTTTTAAAAGAATGAATGAAATTTTGAAGTGATATTCGATTATTTTGAGC
* * * ** * *
4386761 AAACTCAGAATTGCAACCCAGCACGTTAGGGTACGATTCCATGAATTTCCAAATATCAAATTTTG
66 AAACACAAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAATTTCG
*
4386826 A
131 T
* *
4386827 CTTCATTTTAAAGAATTTTTAAAAGACATGAATGAAATTTTGAAGTGATATTCGGTTATTTTGAG
1 CTTCGTTTTAAAGAATTTTTAAAAGA-ATGAATGAAATTTTGAAGTGATATTCGATTATTTTGAG
* * * * * *
4386892 CAAACGCAAAATTGCAACTCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCGAATGTC
65 CAAACACAAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAATTTC
4386957 GT
130 GT
* * *
4386959 CTTCGTTTTGAAGAATTTTTGAATGAATGA
1 CTTCGTTTTAAAGAATTTTTAAAAGAATGA
4386989 TTATAAAGCT
Statistics
Matches: 243, Mismatches: 46, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
129 5 0.02
130 104 0.43
131 28 0.12
132 106 0.44
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (131 bp):
CTTCGTTTTAAAGAATTTTTAAAAGAATGAATGAAATTTTGAAGTGATATTCGATTATTTTGAGC
AAACACAAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAATTTCG
T
Found at i:4387394 original size:2 final size:2
Alignment explanation
Indices: 4387389--4387422 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
4387379 AAAAATAGGG
*
4387389 AT AT AT AT AT AT AT AT AT AT AT A- AT AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4387423 AATTTATATG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4387792 original size:16 final size:17
Alignment explanation
Indices: 4387763--4387795 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
4387753 TCTAAAAGAA
4387763 ATTATATGTATAAAAAT
1 ATTATATGTATAAAAAT
*
4387780 ATTA-ATGTTTAAAAAT
1 ATTATATGTATAAAAAT
4387796 GTATTTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (17 bp):
ATTATATGTATAAAAAT
Found at i:4388094 original size:18 final size:18
Alignment explanation
Indices: 4388067--4388101 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4388057 ATACAAATGA
* *
4388067 TACAATTAATATTAACAT
1 TACAACTAATATAAACAT
4388085 TACAACTAATATAAACA
1 TACAACTAATATAAACA
4388102 ATAAAAAACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.31
Consensus pattern (18 bp):
TACAACTAATATAAACAT
Found at i:4392112 original size:46 final size:46
Alignment explanation
Indices: 4392059--4392228 Score: 243
Period size: 46 Copynumber: 3.7 Consensus size: 46
4392049 ATAATCTCAC
** *
4392059 CCATAATGAACTCGGAATGCAACTCAACAAGCTCGGGTGTTCGCAT
1 CCATAATGAACTCGGAACACAACTCAACGAGCTCGGGTGTTCGCAT
*
4392105 CCATAATGAACTCGGAACACAACTCAACGAGCTCAGGTGTTCGCAT
1 CCATAATGAACTCGGAACACAACTCAACGAGCTCGGGTGTTCGCAT
* *
4392151 CCATAATGAACTCGGAACACAACTCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACACAACTCAACGAGCTCGGGTG-TTCGCAT
* *
4392197 CCATAGGTGAACTCGGAACGCAACTCAACGAG
1 CCATA-ATGAACTCGGAACACAACTCAACGAG
4392229 TTAGGATGCC
Statistics
Matches: 113, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
46 87 0.77
47 26 0.23
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAATGAACTCGGAACACAACTCAACGAGCTCGGGTGTTCGCAT
Found at i:4396033 original size:17 final size:16
Alignment explanation
Indices: 4395989--4396034 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
4395979 GATTGCAACA
4395989 AATCAAAGTTCATA-T
1 AATCAAAGTTCATATT
4396004 -ATCAAA-TTGCATATT
1 AATCAAAGTT-CATATT
4396019 GAATCAAAGTTCATAT
1 -AATCAAAGTTCATAT
4396035 CTAGTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
13 2 0.08
14 10 0.38
15 1 0.04
17 11 0.42
18 2 0.08
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (16 bp):
AATCAAAGTTCATATT
Found at i:4399842 original size:15 final size:15
Alignment explanation
Indices: 4399822--4399851 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
4399812 TTTCAATAAT
4399822 CTTTCCTTGGTCCCC
1 CTTTCCTTGGTCCCC
4399837 CTTTCCTTGGTCCCC
1 CTTTCCTTGGTCCCC
4399852 TCCTTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.47, G:0.13, T:0.40
Consensus pattern (15 bp):
CTTTCCTTGGTCCCC
Found at i:4402423 original size:14 final size:14
Alignment explanation
Indices: 4402404--4402441 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
4402394 TGTTTCATTT
*
4402404 AAAATAATTT-TTA
1 AAAATAATTTCTGA
4402417 GAAAATAATTTCTGA
1 -AAAATAATTTCTGA
4402432 AAAATAATTT
1 AAAATAATTT
4402442 ATTTTTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 20 0.91
15 2 0.09
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (14 bp):
AAAATAATTTCTGA
Found at i:4402467 original size:21 final size:21
Alignment explanation
Indices: 4402429--4402468 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4402419 AAATAATTTC
*
4402429 TGAAAAATAATTTATTTTTTT
1 TGAAAAATAATATATTTTTTT
*
4402450 TGAAAAATTA-ATATTTTTT
1 TGAAAAATAATATATTTTTT
4402469 AGTATTTAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (21 bp):
TGAAAAATAATATATTTTTTT
Found at i:4403006 original size:16 final size:17
Alignment explanation
Indices: 4402987--4403023 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
4402977 TACGTAATAA
4402987 TATTATTTAAAA-TTAT
1 TATTATTTAAAATTTAT
4403003 TATT-TTTAAAATTTAT
1 TATTATTTAAAATTTAT
4403019 TATTA
1 TATTA
4403024 AAATATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTATTTAAAATTTAT
Found at i:4404071 original size:17 final size:16
Alignment explanation
Indices: 4404049--4404083 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
4404039 AATACAAAAA
4404049 ATTATTATATTCATTTT
1 ATTATTAT-TTCATTTT
*
4404066 ATTATTATTTTATTTT
1 ATTATTATTTCATTTT
4404082 AT
1 AT
4404084 AAATCCATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (16 bp):
ATTATTATTTCATTTT
Found at i:4404110 original size:6 final size:6
Alignment explanation
Indices: 4404099--4404137 Score: 69
Period size: 6 Copynumber: 6.3 Consensus size: 6
4404089 CATATTTTAA
4404099 TATAAT TATAAT TATAAT TATAAT TATAAT TATATAT TA
1 TATAAT TATAAT TATAAT TATAAT TATAAT TATA-AT TA
4404138 ATATAAATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 28 0.88
7 4 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
TATAAT
Found at i:4404602 original size:3 final size:3
Alignment explanation
Indices: 4404594--4404627 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
4404584 AAATACTATA
4404594 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4404628 ATTATATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:4409329 original size:22 final size:22
Alignment explanation
Indices: 4409295--4409341 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
4409285 TATAAAAACG
4409295 AAATGACAACAAAACAACAACA
1 AAATGACAACAAAACAACAACA
* * *
4409317 AAATGATAGCAAAACAACAATA
1 AAATGACAACAAAACAACAACA
4409339 AAA
1 AAA
4409342 AGGAAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.68, C:0.17, G:0.06, T:0.09
Consensus pattern (22 bp):
AAATGACAACAAAACAACAACA
Found at i:4412089 original size:36 final size:36
Alignment explanation
Indices: 4412042--4412120 Score: 158
Period size: 36 Copynumber: 2.2 Consensus size: 36
4412032 TGAATGAAAT
4412042 CATTTTGGTTGGAGCTCTATCCCTTGTATAACATGC
1 CATTTTGGTTGGAGCTCTATCCCTTGTATAACATGC
4412078 CATTTTGGTTGGAGCTCTATCCCTTGTATAACATGC
1 CATTTTGGTTGGAGCTCTATCCCTTGTATAACATGC
4412114 CATTTTG
1 CATTTTG
4412121 TTTGAATCCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.41
Consensus pattern (36 bp):
CATTTTGGTTGGAGCTCTATCCCTTGTATAACATGC
Found at i:4423407 original size:29 final size:29
Alignment explanation
Indices: 4423365--4423426 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
4423355 AGTCAGGTTC
4423365 TTATATGTATTTTTTAGTTGTATAATAAT
1 TTATATGTATTTTTTAGTTGTATAATAAT
4423394 TTATATGTATTTTTTAGTTGTATAATAAT
1 TTATATGTATTTTTTAGTTGTATAATAAT
4423423 TTAT
1 TTAT
4423427 CTTCCCTCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (29 bp):
TTATATGTATTTTTTAGTTGTATAATAAT
Found at i:4426788 original size:5 final size:5
Alignment explanation
Indices: 4426778--4426819 Score: 57
Period size: 5 Copynumber: 8.2 Consensus size: 5
4426768 ACTGGAATTA
* *
4426778 TGTTT TGTTT TGTTT TGTTT TGTCT TGTCT TGTTTT TGTTT T
1 TGTTT TGTTT TGTTT TGTTT TGTTT TGTTT TG-TTT TGTTT T
4426820 TAATAATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.00, C:0.05, G:0.19, T:0.76
Consensus pattern (5 bp):
TGTTT
Found at i:4427213 original size:21 final size:20
Alignment explanation
Indices: 4427183--4427222 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
4427173 AACTATAAAT
4427183 TATTAAAATTATATTAAAAG
1 TATTAAAATTATATTAAAAG
*
4427203 TATTAAAAATTATGTTAAAA
1 TATT-AAAATTATATTAAAA
4427223 AATTCAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (20 bp):
TATTAAAATTATATTAAAAG
Found at i:4427282 original size:28 final size:28
Alignment explanation
Indices: 4427250--4427337 Score: 107
Period size: 28 Copynumber: 3.3 Consensus size: 28
4427240 CGTCCCTTAA
*
4427250 AAAATCAAAGTCAGATTTCTGTTAAAAC
1 AAAATCAAAGTCAGATTTCTATTAAAAC
*
4427278 AAAATCAAA-CCA-AGTTT-TATT--AA-
1 AAAATCAAAGTCAGA-TTTCTATTAAAAC
4427301 AAAATCAAAGTCAGATTTCTATTAAAAC
1 AAAATCAAAGTCAGATTTCTATTAAAAC
4427329 AAAATCAAA
1 AAAATCAAA
4427338 CCAAGTTTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
23 9 0.18
24 7 0.14
25 5 0.10
26 4 0.08
27 7 0.14
28 18 0.36
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (28 bp):
AAAATCAAAGTCAGATTTCTATTAAAAC
Found at i:4427304 original size:51 final size:51
Alignment explanation
Indices: 4427246--4427352 Score: 205
Period size: 51 Copynumber: 2.1 Consensus size: 51
4427236 TAGTCGTCCC
*
4427246 TTAAAAAATCAAAGTCAGATTTCTGTTAAAACAAAATCAAACCAAGTTTTA
1 TTAAAAAATCAAAGTCAGATTTCTATTAAAACAAAATCAAACCAAGTTTTA
4427297 TTAAAAAATCAAAGTCAGATTTCTATTAAAACAAAATCAAACCAAGTTTTA
1 TTAAAAAATCAAAGTCAGATTTCTATTAAAACAAAATCAAACCAAGTTTTA
4427348 TTAAA
1 TTAAA
4427353 GCTAAAATTT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (51 bp):
TTAAAAAATCAAAGTCAGATTTCTATTAAAACAAAATCAAACCAAGTTTTA
Found at i:4427306 original size:23 final size:23
Alignment explanation
Indices: 4427278--4427352 Score: 80
Period size: 23 Copynumber: 3.0 Consensus size: 23
4427268 CTGTTAAAAC
4427278 AAAATCAAACCAAGTTTTATTAA
1 AAAATCAAACCAAGTTTTATTAA
*
4427301 AAAATCAAAGTC-AGATTTCTATTAAAA
1 AAAATCAAA-CCAAG-TTT-TATT--AA
4427328 CAAAATCAAACCAAGTTTTATTAA
1 -AAAATCAAACCAAGTTTTATTAA
4427352 A
1 A
4427353 GCTAAAATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
23 12 0.28
24 6 0.14
25 4 0.09
26 4 0.09
27 6 0.14
28 11 0.26
ACGTcount: A:0.52, C:0.13, G:0.05, T:0.29
Consensus pattern (23 bp):
AAAATCAAACCAAGTTTTATTAA
Found at i:4430696 original size:54 final size:52
Alignment explanation
Indices: 4430522--4430693 Score: 202
Period size: 53 Copynumber: 3.2 Consensus size: 52
4430512 TACACGGAAG
* * * *
4430522 CACTTATCACTTTTCTCCGATGCTATAGCCCAGTTATGGTCTTATAC-AGAT
1 CACTTATCACTTTTATCCGATGCCATAGCCCAGCTATGGTCTTATACAATAT
* *
4430573 CACTTGTATCACTTTAATCCGAAGCCATAGCCCAGCTATGGTCTTATACAGATAT
1 CAC-T-TATCACTTTTATCCGATGCCATAGCCCAGCTATGGTCTTATACA-ATAT
* * * *
4430628 CGCTTATCACTTGTTTTTCGATGCCATAGCCCAACTATGGTCTTATACGAATAT
1 CACTTATCACTT-TTATCCGATGCCATAGCCCAGCTATGGTCTTATAC-AATAT
4430682 CACTTATCACTT
1 CACTTATCACTT
4430694 GTTGCCATGG
Statistics
Matches: 102, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
51 3 0.03
52 1 0.01
53 46 0.45
54 46 0.45
55 6 0.06
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (52 bp):
CACTTATCACTTTTATCCGATGCCATAGCCCAGCTATGGTCTTATACAATAT
Found at i:4446160 original size:34 final size:34
Alignment explanation
Indices: 4446117--4446184 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
4446107 AAAACCAAAA
4446117 GCAGGTGGAGCATCAGATTAATACAGAATCAACT
1 GCAGGTGGAGCATCAGATTAATACAGAATCAACT
4446151 GCAGGTGGAGCATCAGATTAATACAGAATCAACT
1 GCAGGTGGAGCATCAGATTAATACAGAATCAACT
4446185 CCTCAAGCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (34 bp):
GCAGGTGGAGCATCAGATTAATACAGAATCAACT
Found at i:4451692 original size:21 final size:21
Alignment explanation
Indices: 4451666--4451706 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4451656 AGATGAGCGA
* *
4451666 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
4451687 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
4451707 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:4458123 original size:29 final size:30
Alignment explanation
Indices: 4458075--4458131 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
4458065 TATTTGATTC
*
4458075 ATTTAAATAATATAGCGACTAAATTGATCT
1 ATTTAAATAATAGAGCGACTAAATTGATCT
* *
4458105 ATTT-AATAATAGAGGGACTAATTTGAT
1 ATTTAAATAATAGAGCGACTAAATTGAT
4458132 TTAGTCTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.42, C:0.07, G:0.14, T:0.37
Consensus pattern (30 bp):
ATTTAAATAATAGAGCGACTAAATTGATCT
Found at i:4459647 original size:20 final size:20
Alignment explanation
Indices: 4459609--4459647 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
4459599 TATTTTTAAT
*
4459609 TTAATATTTTTTTTCTTTTA
1 TTAATATTTTTTTTATTTTA
4459629 TTAAT-TTTTTTTGTATTTT
1 TTAATATTTTTTT-TATTTT
4459648 TCATGTCTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.77
Consensus pattern (20 bp):
TTAATATTTTTTTTATTTTA
Found at i:4464785 original size:13 final size:13
Alignment explanation
Indices: 4464767--4464808 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
4464757 CTAGTGTGAG
4464767 AAATGATATTATC
1 AAATGATATTATC
* *
4464780 AAATGAATTTTACC
1 AAATG-ATATTATC
4464794 AAATGATATTATC
1 AAATGATATTATC
4464807 AA
1 AA
4464809 TCCATGTAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.36
Consensus pattern (13 bp):
AAATGATATTATC
Found at i:4468670 original size:72 final size:75
Alignment explanation
Indices: 4468584--4468895 Score: 270
Period size: 75 Copynumber: 4.3 Consensus size: 75
4468574 ACTGAATTGC
* * * *
4468584 CTACAAGTGCTAAAGAGATGGATAAGACTTTGGA-GA-T-GAACATTGAATTGTTACCAAAGCCT
1 CTACAAGTGCTAAAGAGATGGATAAGAATATGGAGGAGTGGAACATCGAATTGATACCAAAGCCT
4468646 ATAGAAGATT
66 ATAGAAGATT
* * * * * * *
4468656 CTACAAGTCCTAAAGAGATGGGTCATAATATGGAGGAGTGGAGCATCGAATTGATATCAAAGCTT
1 CTACAAGTGCTAAAGAGATGGATAAGAATATGGAGGAGTGGAACATCGAATTGATACCAAAGCCT
*
4468721 ATGGAAGATT
66 ATAGAAGATT
* * * * * *
4468731 CTCCAAGTGCT-AA-AGA--GATCAG--TATGGAGGAG-GAGAACATCAAACTCATACCAAAGCT
1 CTACAAGTGCTAAAGAGATGGATAAGAATATGGAGGAGTG-GAACATCGAATTGATACCAAAGCC
4468789 TATAGAAGATT
65 TATAGAAGATT
* * * * **
4468800 CTACAAGTGCTAAAGAGATAGATATGAATATGAAGGAG-GAGAACGTTC-AATTGATGTCAAAGC
1 CTACAAGTGCTAAAGAGATGGATAAGAATATGGAGGAGTG-GAAC-ATCGAATTGATACCAAAGC
*
4468863 TTATAGAAGATT
64 CTATAGAAGATT
* *
4468875 CTTCAAATGCTAAAGAGATGG
1 CTACAAGTGCTAAAGAGATGG
4468896 GTAAAGATGT
Statistics
Matches: 195, Mismatches: 34, Indels: 19
0.79 0.14 0.08
Matches are distributed among these distances:
68 1 0.01
69 49 0.25
70 2 0.01
71 7 0.04
72 28 0.14
73 9 0.05
74 3 0.02
75 94 0.48
76 2 0.01
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (75 bp):
CTACAAGTGCTAAAGAGATGGATAAGAATATGGAGGAGTGGAACATCGAATTGATACCAAAGCCT
ATAGAAGATT
Found at i:4468738 original size:75 final size:75
Alignment explanation
Indices: 4468621--4468897 Score: 284
Period size: 75 Copynumber: 3.8 Consensus size: 75
4468611 CTTTGGAGAT
* * * *
4468621 GAACATTGAATTGTTACCAAAGCCTATAGAAGATTCTACAAGTCCTAAAGAGATGGGTCATAATA
1 GAACATCGAATTGATACCAAAGCTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTCATAATA
4468686 TGGAGGAGTG-
66 TGGAGGAG-GA
* * * * *
4468696 GAGCATCGAATTGATATCAAAGCTTATGGAAGATTCTCCAAGTGCTAAAGAGA----TC--AGTA
1 GAACATCGAATTGATACCAAAGCTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTCATAATA
4468755 TGGAGGAGGA
66 TGGAGGAGGA
* * * * *
4468765 GAACATCAAACTCATACCAAAGCTTATAGAAGATTCTACAAGTGCTAAAGAGATAGAT-ATGAAT
1 GAACATCGAATTGATACCAAAGCTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTCAT-AAT
*
4468829 ATGAAGGAGGA
65 ATGGAGGAGGA
* ** * *
4468840 GAACGTTC-AATTGATGTCAAAGCTTATAGAAGATTCTTCAAATGCTAAAGAGATGGGT
1 GAAC-ATCGAATTGATACCAAAGCTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGT
4468898 AAAGATGTGG
Statistics
Matches: 166, Mismatches: 27, Indels: 18
0.79 0.13 0.09
Matches are distributed among these distances:
68 1 0.01
69 57 0.34
71 2 0.01
73 1 0.01
75 103 0.62
76 2 0.01
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.25
Consensus pattern (75 bp):
GAACATCGAATTGATACCAAAGCTTATAGAAGATTCTACAAGTGCTAAAGAGATGGGTCATAATA
TGGAGGAGGA
Found at i:4471920 original size:2 final size:2
Alignment explanation
Indices: 4471913--4471954 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
4471903 GAGGCAGTGG
4471913 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
4471955 CCTGTCACAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:4473002 original size:13 final size:13
Alignment explanation
Indices: 4472984--4473031 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
4472974 AGTAAATTTG
4472984 ATAATATAAACCT
1 ATAATATAAACCT
* **
4472997 ATAATATGATATGT
1 ATAATAT-AAACCT
4473011 GATAATATAAACCT
1 -ATAATATAAACCT
4473025 ATAATAT
1 ATAATAT
4473032 GATATGCCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
13 14 0.52
14 6 0.22
15 7 0.26
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.35
Consensus pattern (13 bp):
ATAATATAAACCT
Found at i:4473022 original size:28 final size:28
Alignment explanation
Indices: 4472982--4473037 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
4472972 GCAGTAAATT
4472982 TGATAATATAAACCTATAATATGATATG
1 TGATAATATAAACCTATAATATGATATG
4473010 TGATAATATAAACCTATAATATGATATG
1 TGATAATATAAACCTATAATATGATATG
4473038 CCTTAAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (28 bp):
TGATAATATAAACCTATAATATGATATG
Found at i:4479155 original size:18 final size:19
Alignment explanation
Indices: 4479121--4479157 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
4479111 ATAAATATAA
4479121 ATATATAATTATTATTTAAC
1 ATATATAATTA-TATTTAAC
4479141 ATATATAATTA-ATTTAA
1 ATATATAATTATATTTAA
4479158 TATTTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATATAATTATATTTAAC
Found at i:4482549 original size:14 final size:14
Alignment explanation
Indices: 4482527--4482575 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
4482517 GTTTATTTAT
*
4482527 ATTATATTAAGTTA
1 ATTAAATTAAGTTA
*
4482541 ATTAAATTATGTTA
1 ATTAAATTAAGTTA
*
4482555 ATGATAATTAAGTTA
1 ATTA-AATTAAGTTA
4482570 AGTTAA
1 A-TTAA
4482576 TTAGGTCTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 15 0.54
15 11 0.39
16 2 0.07
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (14 bp):
ATTAAATTAAGTTA
Found at i:4482564 original size:20 final size:20
Alignment explanation
Indices: 4482539--4482576 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4482529 TATATTAAGT
*
4482539 TAATTAAATTATGTTAATGA
1 TAATTAAATTAAGTTAATGA
*
4482559 TAATTAAGTTAAGTTAAT
1 TAATTAAATTAAGTTAAT
4482577 TAGGTCTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (20 bp):
TAATTAAATTAAGTTAATGA
Found at i:4486308 original size:24 final size:25
Alignment explanation
Indices: 4486275--4486327 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
4486265 TATTTTTATA
*
4486275 ATTTTCATAATTTTAATTTATTAAT
1 ATTTTCATAATTATAATTTATTAAT
* *
4486300 ATTTT-ATAATTATATTTTTTTAAT
1 ATTTTCATAATTATAATTTATTAAT
4486324 ATTT
1 ATTT
4486328 AGAATAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (25 bp):
ATTTTCATAATTATAATTTATTAAT
Found at i:4486650 original size:17 final size:17
Alignment explanation
Indices: 4486627--4486674 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
4486617 TATTAAATAA
4486627 AATAAAATTATAACAACT
1 AATAAAATTATAA-AACT
4486645 -ATAAAA-TATAAAACT
1 AATAAAATTATAAAACT
*
4486660 AAAAAAATTATAAAA
1 AATAAAATTATAAAA
4486675 AGGGTTCGCC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 4 0.15
16 10 0.37
17 13 0.48
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (17 bp):
AATAAAATTATAAAACT
Found at i:4490688 original size:35 final size:35
Alignment explanation
Indices: 4490649--4490726 Score: 88
Period size: 36 Copynumber: 2.2 Consensus size: 35
4490639 GCTGAACATC
*
4490649 TTTCTTTAGTTTCATAGTTTTAGGTTAGG-TTTCT-T
1 TTTCTTTAGTTTCAT--TTTTAGATTAGGTTTTCTCT
**
4490684 TTTCTTTTCTTTTCATTTTTAGATTAGGTTTTCTCT
1 TTTC-TTTAGTTTCATTTTTAGATTAGGTTTTCTCT
4490720 TTTCTTT
1 TTTCTTT
4490727 TTAGAATAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
34 11 0.30
35 12 0.32
36 14 0.38
ACGTcount: A:0.12, C:0.12, G:0.12, T:0.65
Consensus pattern (35 bp):
TTTCTTTAGTTTCATTTTTAGATTAGGTTTTCTCT
Found at i:4490740 original size:25 final size:26
Alignment explanation
Indices: 4490691--4490740 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
4490681 CTTTTTCTTT
* *
4490691 TCTTTTCATTTTTAGATTAGGTTTTC
1 TCTTTTCATTTTTAGAATAGATTTTC
4490717 TCTTTTC-TTTTTAGAATAGATTTT
1 TCTTTTCATTTTTAGAATAGATTTT
4490741 ATATTTATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.18, C:0.10, G:0.10, T:0.62
Consensus pattern (26 bp):
TCTTTTCATTTTTAGAATAGATTTTC
Found at i:4496367 original size:20 final size:17
Alignment explanation
Indices: 4496318--4496367 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 17
4496308 TTACGTGTCC
4496318 ATATATATATTATAAAA
1 ATATATATATTATAAAA
4496335 ATATATACTTATTCATAAAA
1 ATATATA--TATT-ATAAAA
4496355 ATAGTTATATATT
1 ATA--TATATATT
4496368 TTAGGTTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 7 0.25
19 4 0.14
20 13 0.46
22 4 0.14
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (17 bp):
ATATATATATTATAAAA
Found at i:4497400 original size:27 final size:27
Alignment explanation
Indices: 4497358--4497413 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
4497348 ATAATAAAAT
* * *
4497358 ACTGGTTTTGCTTCTGTCAGAAGCGGC
1 ACTGGTCTTGCCTCTGCCAGAAGCGGC
*
4497385 ACTGGTCTTGCCTCTGCCAGAGGCGGC
1 ACTGGTCTTGCCTCTGCCAGAAGCGGC
4497412 AC
1 AC
4497414 CAGTTGGTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.14, C:0.29, G:0.30, T:0.27
Consensus pattern (27 bp):
ACTGGTCTTGCCTCTGCCAGAAGCGGC
Found at i:4498080 original size:21 final size:21
Alignment explanation
Indices: 4498056--4498096 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
4498046 CAGATTCAAA
*
4498056 TTTTTTTACTGTTTTCAACTT
1 TTTTTTTACTATTTTCAACTT
4498077 TTTTTTTACTATTTTCAACT
1 TTTTTTTACTATTTTCAACT
4498097 ATTTGTGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.15, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTTTTTACTATTTTCAACTT
Found at i:4500036 original size:28 final size:26
Alignment explanation
Indices: 4499966--4500042 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 26
4499956 TGAAAATTGA
* *
4499966 TATAAACTTATAAATATTATAAAAAAT
1 TATAAA-TTATAAAAAATATAAAAAAT
* * *
4499993 TGTAAA-TATTATAAATATAAAAAAT
1 TATAAATTATAAAAAATATAAAAAAT
4500018 CTAATAAATTATAAAAAATATAAAA
1 -T-ATAAATTATAAAAAATATAAAA
4500043 TTAAAAAACA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
25 15 0.38
26 1 0.03
27 9 0.23
28 14 0.36
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (26 bp):
TATAAATTATAAAAAATATAAAAAAT
Found at i:4500055 original size:17 final size:17
Alignment explanation
Indices: 4499916--4500157 Score: 89
Period size: 19 Copynumber: 13.2 Consensus size: 17
4499906 AAAGTTGTCA
* *
4499916 AAAAATATAAAAATTAT
1 AAAATTATAAAAAATAT
*
4499933 TAAA-TATAAAAAATAT
1 AAAATTATAAAAAATAT
*
4499949 AAAATTATGAAAATTGATAT
1 AAAATTAT-AAAA--AATAT
* * *
4499969 AAACTTATAAATATTATAA
1 AAAATTATAAA-A-AATAT
* * *
4499988 AAAATTGTAAATATTAT
1 AAAATTATAAAAAATAT
*
4500005 -AAA-TATAAAAAATCT
1 AAAATTATAAAAAATAT
4500020 AATAAATTATAAAAAATAT
1 -A-AAATTATAAAAAATAT
4500039 AAAATTA-AAAAACATATTT
1 AAAATTATAAAAA-ATA--T
4500058 AAAATTTTATAAAAAAAGTATT
1 AAAA--TTAT-AAAAAA-TA-T
*
4500080 AAAATTCTATAAAAATAAT
1 AAAATTATA-AAAAAT-AT
** *
4500099 AAAAACCATAAAAATTATT
1 -AAAATTATAAAAAATA-T
4500118 AAAA-TATTAAAAATGATAT
1 AAAATTA-TAAAAA--ATAT
* * *
4500137 GAAGTTATAAAAATTAT
1 AAAATTATAAAAAATAT
4500154 AAAA
1 AAAA
4500158 AAGATTCATA
Statistics
Matches: 170, Mismatches: 30, Indels: 50
0.68 0.12 0.20
Matches are distributed among these distances:
15 8 0.05
16 22 0.13
17 23 0.14
18 19 0.11
19 50 0.29
20 31 0.18
21 3 0.02
22 7 0.04
23 7 0.04
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.32
Consensus pattern (17 bp):
AAAATTATAAAAAATAT
Found at i:4500155 original size:9 final size:9
Alignment explanation
Indices: 4499915--4500158 Score: 108
Period size: 9 Copynumber: 26.6 Consensus size: 9
4499905 AAAAGTTGTC
*
4499915 AAAAAATAT
1 AAAAATTAT
4499924 AAAAATTAT
1 AAAAATTAT
*
4499933 -TAAA-TAT
1 AAAAATTAT
*
4499940 AAAAAATAT
1 AAAAATTAT
4499949 -AAAATTAT
1 AAAAATTAT
*
4499957 GAAAATTGAT
1 AAAAATT-AT
*
4499967 ATAAACTTAT
1 A-AAAATTAT
*
4499977 AAATATTAT
1 AAAAATTAT
*
4499986 AAAAAATTGT
1 -AAAAATTAT
*
4499996 AAATATTAT
1 AAAAATTAT
*
4500005 AAATA-TA-
1 AAAAATTAT
4500012 AAAAATCTA-
1 AAAAAT-TAT
*
4500021 ATAAATTAT
1 AAAAATTAT
*
4500030 AAAAAATAT
1 AAAAATTAT
*
4500039 -AAAATTAA
1 AAAAATTAT
*
4500047 AAAACATATTT
1 AAAA-AT-TAT
*
4500058 AAAATTTTAT
1 AAAA-ATTAT
*
4500068 AAAAAAAGTATT
1 --AAAAATTA-T
*
4500080 AAAATTCTAT
1 AAAAAT-TAT
*
4500090 AAAAATAAT
1 AAAAATTAT
**
4500099 AAAAACCAT
1 AAAAATTAT
4500108 AAAAATTAT
1 AAAAATTAT
*
4500117 TAAAA-TATT
1 AAAAATTA-T
*
4500126 AAAAATGAT
1 AAAAATTAT
* *
4500135 ATGAAGTTAT
1 A-AAAATTAT
4500145 AAAAATTAT
1 AAAAATTAT
4500154 AAAAA
1 AAAAA
4500159 AGATTCATAA
Statistics
Matches: 175, Mismatches: 41, Indels: 38
0.69 0.16 0.15
Matches are distributed among these distances:
7 7 0.04
8 25 0.14
9 90 0.51
10 33 0.19
11 15 0.09
12 5 0.03
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:4501746 original size:7 final size:7
Alignment explanation
Indices: 4501731--4501765 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
4501721 GTTCCCAATT
*
4501731 CAATCCA
1 CAATTCA
4501738 CAATTCA
1 CAATTCA
4501745 CAATTCA
1 CAATTCA
4501752 CAATTCA
1 CAATTCA
*
4501759 CATTTCA
1 CAATTCA
4501766 TTTTCCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.40, C:0.31, G:0.00, T:0.29
Consensus pattern (7 bp):
CAATTCA
Found at i:4502760 original size:24 final size:25
Alignment explanation
Indices: 4502717--4502767 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
4502707 CACTGTAAGG
*
4502717 GGGGTTCTTTTTTTTGGAGAAAAAA
1 GGGGTTCTTTTTTTTAGAGAAAAAA
4502742 GGGGTTC-TTTTTTTAGAGAAAAAA
1 GGGGTTCTTTTTTTTAGAGAAAAAA
4502766 GG
1 GG
4502768 AGAGATTCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 18 0.72
25 7 0.28
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.37
Consensus pattern (25 bp):
GGGGTTCTTTTTTTTAGAGAAAAAA
Found at i:4502793 original size:23 final size:24
Alignment explanation
Indices: 4502761--4502811 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 24
4502751 TTTTTAGAGA
4502761 AAAAAGGAGAGA-TTCGAATACAAG
1 AAAAAGGAGAGACTTC-AATACAAG
4502785 AAAAA-GAGAGACTTTCAATACAAG
1 AAAAAGGAGAGAC-TTCAATACAAG
4502809 AAA
1 AAA
4502812 TACACGAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 6 0.24
24 16 0.64
25 3 0.12
ACGTcount: A:0.57, C:0.10, G:0.20, T:0.14
Consensus pattern (24 bp):
AAAAAGGAGAGACTTCAATACAAG
Found at i:4503102 original size:3 final size:3
Alignment explanation
Indices: 4503094--4503146 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
4503084 GGGAAGAATG
*
4503094 TTA TTA TTA TTA TTA TTA TTA ATA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4503142 TTA TT
1 TTA TT
4503147 CTATATACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:4503247 original size:23 final size:23
Alignment explanation
Indices: 4503194--4503247 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
4503184 AATAGTGATT
* * **
4503194 TTATTATTATTTTTAACTTTTTA
1 TTATTATTATTATTAACCTACTA
* *
4503217 TTACTATTATTATTAACCTACTG
1 TTATTATTATTATTAACCTACTA
4503240 TTATTATT
1 TTATTATT
4503248 TTTTATCAAT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.02, T:0.61
Consensus pattern (23 bp):
TTATTATTATTATTAACCTACTA
Found at i:4503343 original size:15 final size:16
Alignment explanation
Indices: 4503322--4503385 Score: 62
Period size: 15 Copynumber: 4.1 Consensus size: 16
4503312 TTAATGTATC
4503322 ATTATTATTTTCTATT
1 ATTATTATTTTCTATT
*
4503338 -TTATTATTACTTTTATT
1 ATTATTATT--TTCTATT
* *
4503355 ACTATT-GTTTCTATT
1 ATTATTATTTTCTATT
4503370 ATTATTATTTTC-ATT
1 ATTATTATTTTCTATT
4503385 A
1 A
4503386 CTTCCGTTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
15 23 0.61
16 4 0.11
17 7 0.18
18 4 0.11
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.66
Consensus pattern (16 bp):
ATTATTATTTTCTATT
Found at i:4503400 original size:30 final size:30
Alignment explanation
Indices: 4503334--4503416 Score: 84
Period size: 30 Copynumber: 2.8 Consensus size: 30
4503324 TATTATTTTC
*
4503334 TATT-TTATTATTACTTTT-ATTACTATTGT
1 TATTATTATTATTA-TTTTCATTACTATCGT
4503363 T-TCTATTATTATTATTTTCATTACT-TCCGT
1 TAT-TATTATTATTATTTTCATTACTAT-CGT
*
4503393 TATTATTATCATTATTTTCTATTA
1 TATTATTATTATTATTTTC-ATTA
4503417 TCATTAATAT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
28 1 0.02
29 7 0.15
30 33 0.72
31 5 0.11
ACGTcount: A:0.24, C:0.11, G:0.02, T:0.63
Consensus pattern (30 bp):
TATTATTATTATTATTTTCATTACTATCGT
Found at i:4503518 original size:25 final size:23
Alignment explanation
Indices: 4503482--4503533 Score: 77
Period size: 25 Copynumber: 2.2 Consensus size: 23
4503472 TTATATTTAC
4503482 TTTTTTAATATTATTACCATTAT
1 TTTTTTAATATTATTACCATTAT
*
4503505 TTTTTTAAATTATTATTACTATTAT
1 TTTTTT-AA-TATTATTACCATTAT
4503530 TTTT
1 TTTT
4503534 ATTATCCGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 6 0.23
24 2 0.08
25 18 0.69
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTTTTAATATTATTACCATTAT
Found at i:4503527 original size:22 final size:23
Alignment explanation
Indices: 4503482--4503534 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
4503472 TTATATTTAC
*
4503482 TTTTTTAATATTATTACCATTAT
1 TTTTTTAATATTATTACCACTAT
**
4503505 TTTTTTAA-ATTATTATTACTAT
1 TTTTTTAATATTATTACCACTAT
4503527 TATTTTTA
1 T-TTTTTA
4503535 TTATCCGTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 12 0.46
23 14 0.54
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTTTAATATTATTACCACTAT
Found at i:4504082 original size:19 final size:19
Alignment explanation
Indices: 4504058--4504097 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
4504048 AATTCATCCA
4504058 AATACTTTAAAAAAGTATT
1 AATACTTTAAAAAAGTATT
4504077 AATACTTTAAAAAAGTATT
1 AATACTTTAAAAAAGTATT
4504096 AA
1 AA
4504098 CATTTTACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (19 bp):
AATACTTTAAAAAAGTATT
Found at i:4504104 original size:19 final size:19
Alignment explanation
Indices: 4504061--4504104 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
4504051 TCATCCAAAT
*
4504061 ACTTTAAAAAAGTATTAAT
1 ACTTTAAAAAAGTATTAAC
4504080 ACTTTAAAAAAGTATTAAC
1 ACTTTAAAAAAGTATTAAC
*
4504099 ATTTTA
1 ACTTTA
4504105 CCTCGCACGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.39
Consensus pattern (19 bp):
ACTTTAAAAAAGTATTAAC
Found at i:4505388 original size:106 final size:105
Alignment explanation
Indices: 4505243--4505523 Score: 366
Period size: 106 Copynumber: 2.7 Consensus size: 105
4505233 TGTTTCATTG
* * * * * * *
4505243 GTTCGACCACCGGTCGAGTTCTAAAAACCTTGGTCAGAATATTTCATTCTAACATATGCTAATAG
1 GTTCAACCACCAGTCGAGTTTTGAAAACCTAGGTTAGAATA-TTCATTCTGACATATGCTAATAG
*
4505308 TTGGATGAATCGATCGAATTGGAAAATTGGGGGCATGATCA
65 TTGGATGAATCGATCGAATTGGAAAATTAGGGGCATGATCA
*
4505349 GTTCAACCACCAGTCGAGTTTTGAAAACCTAGGTTAGAATATTCTATTCTGACATATGCTAACAG
1 GTTCAACCACCAGTCGAGTTTTGAAAACCTAGGTTAGAATATTC-ATTCTGACATATGCTAATAG
* * * * **
4505414 TTGGATGAATTGATCGAATTGGTAAATTATGGGCATGGTTG
65 TTGGATGAATCGATCGAATTGGAAAATTAGGGGCATGATCA
* * * *
4505455 GTTCAACTACTAGTCGAGTTTTGAAAACTTAGGTTAGAATATT-ATACTGACATATGCTAATAGT
1 GTTCAACCACCAGTCGAGTTTTGAAAACCTAGGTTAGAATATTCATTCTGACATATGCTAATAGT
4505519 TGGAT
66 TGGAT
4505524 AATGAAATTT
Statistics
Matches: 154, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
104 24 0.16
105 3 0.02
106 127 0.82
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (105 bp):
GTTCAACCACCAGTCGAGTTTTGAAAACCTAGGTTAGAATATTCATTCTGACATATGCTAATAGT
TGGATGAATCGATCGAATTGGAAAATTAGGGGCATGATCA
Found at i:4505683 original size:11 final size:10
Alignment explanation
Indices: 4505669--4505846 Score: 80
Period size: 9 Copynumber: 19.4 Consensus size: 10
4505659 TTTTATGATT
4505669 TTTTAATATAA
1 TTTT-ATATAA
4505680 TTTT-TATAA
1 TTTTATATAA
*
4505689 GTTTATATCAA
1 TTTTATAT-AA
4505700 TTTTA-AT-A
1 TTTTATATAA
*
4505708 TTTTTTATAA
1 TTTTATATAA
4505718 TATTT-TAT--
1 T-TTTATATAA
4505726 TTTTA-ATAA
1 TTTTATATAA
4505735 TTTTA-ATAA
1 TTTTATATAA
4505744 TTTT-TAT-A
1 TTTTATATAA
*
4505752 TTTTA-ATTA
1 TTTTATATAA
4505761 TGTTT-TATTAA
1 T-TTTATA-TAA
4505772 -TTT-TATAA
1 TTTTATATAA
4505780 TTTT-T-TAA
1 TTTTATATAA
4505788 TTTTA-AT-A
1 TTTTATATAA
4505796 TTTTATTATCAA
1 TTTTA-TAT-AA
4505808 TTTTA-AT-A
1 TTTTATATAA
4505816 TTTT-T-T-A
1 TTTTATATAA
*
4505823 TTTTTTATAA
1 TTTTATATAA
4505833 TATTT-TATAA
1 T-TTTATATAA
4505843 TTTT
1 TTTT
4505847 TAATCATTTT
Statistics
Matches: 137, Mismatches: 4, Indels: 54
0.70 0.02 0.28
Matches are distributed among these distances:
7 11 0.08
8 35 0.26
9 41 0.30
10 26 0.19
11 18 0.13
12 6 0.04
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (10 bp):
TTTTATATAA
Found at i:4505729 original size:26 final size:27
Alignment explanation
Indices: 4505699--4505823 Score: 98
Period size: 26 Copynumber: 4.6 Consensus size: 27
4505689 GTTTATATCA
4505699 ATTTTAATATTTTTTATAATATTTTAT
1 ATTTTAATATTTTTTATAATATTTTAT
* *
4505726 -TTTTAATAATTTTAATAAT-TTTTAT
1 ATTTTAATATTTTTTATAATATTTTAT
* *
4505751 ATTTTAATTATGTTTTATTA-ATTTTAT
1 ATTTTAA-TATTTTTTATAATATTTTAT
* * * *
4505778 AATTTT-TTAATTTTAAT-ATTTTATTAT
1 -ATTTTAATATTTTTTATAATATT-TTAT
4505805 CAATTTTAATATTTTTTAT
1 --ATTTTAATATTTTTTAT
4505824 TTTTTATAAT
Statistics
Matches: 76, Mismatches: 14, Indels: 14
0.73 0.13 0.13
Matches are distributed among these distances:
25 7 0.09
26 32 0.42
27 18 0.24
28 11 0.14
29 8 0.11
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.66
Consensus pattern (27 bp):
ATTTTAATATTTTTTATAATATTTTAT
Found at i:4505777 original size:16 final size:16
Alignment explanation
Indices: 4505717--4505803 Score: 62
Period size: 16 Copynumber: 5.7 Consensus size: 16
4505707 ATTTTTTATA
*
4505717 ATATTTTATT--TTTA
1 ATATTTTATTAATTTT
*
4505731 ATAATTTTAATAATTTT
1 AT-ATTTTATTAATTTT
*
4505748 -TATATT-TTAA--TT
1 ATATTTTATTAATTTT
*
4505760 ATGTTTTATTAATTTT
1 ATATTTTATTAATTTT
4505776 ATAATTTT-TTAATTTT
1 AT-ATTTTATTAATTTT
4505792 AATATTTTATTA
1 -ATATTTTATTA
4505804 TCAATTTTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 17
0.70 0.09 0.21
Matches are distributed among these distances:
12 2 0.04
13 4 0.07
14 9 0.16
15 11 0.20
16 18 0.32
17 12 0.21
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (16 bp):
ATATTTTATTAATTTT
Found at i:4505780 original size:36 final size:36
Alignment explanation
Indices: 4505698--4505856 Score: 134
Period size: 36 Copynumber: 4.4 Consensus size: 36
4505688 AGTTTATATC
* * *
4505698 AATTTTAATATTTTTTATAATATT--TTATTTTTAAT
1 AATTTTAATAATTTTTAT-ATTTTAATTATTTTTATT
4505733 AATTTTAATAATTTTTATATTTTAATTATGTTTTATT
1 AATTTTAATAATTTTTATATTTTAATTAT-TTTTATT
*
4505770 AATTTT-ATAATTTTT-TAATTTTAA-TATTTTATTATC
1 AATTTTAATAATTTTTAT-ATTTTAATTA-TTT-TTATT
* * *
4505806 AATTTTAATATTTTTTAT-TTTTTATAATATTTTA-T
1 AATTTTAATAATTTTTATATTTTAATTAT-TTTTATT
*
4505841 AATTTTTAATCATTTT
1 AA-TTTTAATAATTTT
4505857 AATAGGGAAA
Statistics
Matches: 103, Mismatches: 10, Indels: 21
0.77 0.07 0.16
Matches are distributed among these distances:
34 4 0.04
35 24 0.23
36 51 0.50
37 23 0.22
38 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (36 bp):
AATTTTAATAATTTTTATATTTTAATTATTTTTATT
Found at i:4505792 original size:62 final size:62
Alignment explanation
Indices: 4505710--4505847 Score: 174
Period size: 62 Copynumber: 2.2 Consensus size: 62
4505700 TTTTAATATT
* * * *
4505710 TTTTATAATATTTTATTTTTAATAATTTTA-AT-AATTTTTATATTTTAATTATGTTTTATTA-A
1 TTTTATAATTTTTTAATTTTAAT-ATTTTATATCAATTTTAATATTTT--TTATGTTTTATAATA
*
4505772 TTTTATAATTTTTTAATTTTAATATTTTATTATCAATTTTAATATTTTTTATTTTTTATAATA
1 TTTTATAATTTTTTAATTTTAATATTTTA-TATCAATTTTAATATTTTTTATGTTTTATAATA
4505835 TTTTATAATTTTT
1 TTTTATAATTTTT
4505848 AATCATTTTA
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
61 6 0.09
62 32 0.48
63 16 0.24
64 13 0.19
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.67
Consensus pattern (62 bp):
TTTTATAATTTTTTAATTTTAATATTTTATATCAATTTTAATATTTTTTATGTTTTATAATA
Found at i:4505804 original size:27 final size:27
Alignment explanation
Indices: 4505774--4505857 Score: 75
Period size: 27 Copynumber: 3.0 Consensus size: 27
4505764 TTTATTAATT
4505774 TTATAATTTTTTAATTTTAATATTTTA
1 TTATAATTTTTTAATTTTAATATTTTA
**
4505801 TTATCAA--TTTTAATATTTTTTATTTT-
1 TTAT-AATTTTTTAAT-TTTAATATTTTA
4505827 TTATAATATTTTATAATTTTTAATCATTTTA
1 TTATAAT-TTTT-TAA-TTTTAAT-ATTTTA
4505858 ATAGGGAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
25 2 0.05
26 11 0.25
27 13 0.30
28 5 0.11
29 7 0.16
30 6 0.14
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.65
Consensus pattern (27 bp):
TTATAATTTTTTAATTTTAATATTTTA
Found at i:4510900 original size:56 final size:56
Alignment explanation
Indices: 4510808--4510919 Score: 154
Period size: 56 Copynumber: 2.0 Consensus size: 56
4510798 AAAAACTCAC
* * *
4510808 AGAACCAAAGGAACCAGTCAGAAACGATGATTGGAGCTGTCAATCAGAGGAAATAA
1 AGAACCAAAGGAACCAGCCAGAAACGATGATCGGAGCTGTCAAACAGAGGAAATAA
* * *
4510864 AGAATCAAAGGAAGCC-GCCAGAAACGATGATCGGAGCTGTTAAACATAGGAAATAA
1 AGAACCAAAGGAA-CCAGCCAGAAACGATGATCGGAGCTGTCAAACAGAGGAAATAA
4510920 CTGGCAATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
56 47 0.96
57 2 0.04
ACGTcount: A:0.45, C:0.16, G:0.25, T:0.14
Consensus pattern (56 bp):
AGAACCAAAGGAACCAGCCAGAAACGATGATCGGAGCTGTCAAACAGAGGAAATAA
Found at i:4512191 original size:30 final size:28
Alignment explanation
Indices: 4512133--4512191 Score: 66
Period size: 30 Copynumber: 2.0 Consensus size: 28
4512123 AAGTAATATG
* *
4512133 GAGAGAAACTCAAAAACAAAAATTGAGA
1 GAGAGAAACGCAAAAACAAAAATAGAGA
4512161 GAGATGAAACGCAAAGAACAACAAA-AGAGA
1 GAGA-GAAACGCAAA-AACAA-AAATAGAGA
4512191 G
1 G
4512192 CTTTGAGGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 4 0.15
29 9 0.35
30 10 0.38
31 3 0.12
ACGTcount: A:0.59, C:0.12, G:0.22, T:0.07
Consensus pattern (28 bp):
GAGAGAAACGCAAAAACAAAAATAGAGA
Found at i:4516843 original size:12 final size:12
Alignment explanation
Indices: 4516828--4516904 Score: 68
Period size: 12 Copynumber: 6.6 Consensus size: 12
4516818 GCACCCACAC
4516828 ACACACATACAT
1 ACACACATACAT
**
4516840 ACACAC--ACGC
1 ACACACATACAT
*
4516850 ACATACATACAT
1 ACACACATACAT
*
4516862 ACATACATACAT
1 ACACACATACAT
* * *
4516874 GCATACAGACAT
1 ACACACATACAT
*
4516886 ACACACATGCAT
1 ACACACATACAT
4516898 ACACACA
1 ACACACA
4516905 CATCCATCCA
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
10 7 0.13
12 45 0.87
ACGTcount: A:0.47, C:0.32, G:0.05, T:0.16
Consensus pattern (12 bp):
ACACACATACAT
Found at i:4516857 original size:4 final size:4
Alignment explanation
Indices: 4516850--4516966 Score: 94
Period size: 4 Copynumber: 29.0 Consensus size: 4
4516840 ACACACACGC
* * * *
4516850 ACAT ACAT ACAT ACAT ACAT ACAT GCAT ACAG ACAT ACAC ACAT GCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * * *
4516898 AC-- ACAC ACAT CCAT CCAT GCAT ACAT ACAT ACAT AAAT GAAAT ATAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT -ACAT ACAT
4516945 CCACAT ACAT ACAT ACAT ACAT
1 --ACAT ACAT ACAT ACAT ACAT
4516967 GCATGTGCAT
Statistics
Matches: 93, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
2 2 0.02
4 84 0.90
5 4 0.04
6 3 0.03
ACGTcount: A:0.46, C:0.27, G:0.04, T:0.22
Consensus pattern (4 bp):
ACAT
Found at i:4524281 original size:6 final size:6
Alignment explanation
Indices: 4524270--4524301 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
4524260 TGTACCTCAT
*
4524270 TTCCTC TTCCTC TTCCTC TTCCTC GTCCTC TT
1 TTCCTC TTCCTC TTCCTC TTCCTC TTCCTC TT
4524302 TCACGGCCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (6 bp):
TTCCTC
Found at i:4524861 original size:24 final size:24
Alignment explanation
Indices: 4524834--4524895 Score: 70
Period size: 24 Copynumber: 2.6 Consensus size: 24
4524824 GTTGTGGTGG
* *
4524834 TGCTTGTGCTAATAATGGTGGCGC
1 TGCTTGTGCTAACAATGATGGCGC
** * *
4524858 TGCTTGTGCCGACAATGATTGCGG
1 TGCTTGTGCTAACAATGATGGCGC
4524882 TGCTTGTGCTAACA
1 TGCTTGTGCTAACA
4524896 CAGGTTGTGA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.32
Consensus pattern (24 bp):
TGCTTGTGCTAACAATGATGGCGC
Found at i:4529686 original size:30 final size:30
Alignment explanation
Indices: 4529643--4529701 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
4529633 CTTAATAAAC
4529643 AAATGCCTCTAAAATAATAA-TAAAATTAAT
1 AAATGCCTCTAAAATAATAACT-AAATTAAT
* *
4529673 AAATGTCTTTAAAATAATAACTAAATTAA
1 AAATGCCTCTAAAATAATAACTAAATTAA
4529702 CAATAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.32
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACTAAATTAAT
Found at i:4529818 original size:16 final size:16
Alignment explanation
Indices: 4529794--4529826 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
4529784 AAATAATAAG
*
4529794 AAAATAATATTTTTTT
1 AAAAAAATATTTTTTT
4529810 AAAAAAATATTTTTTT
1 AAAAAAATATTTTTTT
4529826 A
1 A
4529827 TCCTTCAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AAAAAAATATTTTTTT
Found at i:4530863 original size:2 final size:2
Alignment explanation
Indices: 4530856--4530883 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4530846 GAAATCATAC
4530856 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4530884 GAACAAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4538446 original size:45 final size:44
Alignment explanation
Indices: 4538363--4538451 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 44
4538353 TCACCTAGAC
4538363 TTCATCTGTCATTATCAATCAATTTATTTACATAGTAACTTGAT
1 TTCATCTGTCATTATCAATCAATTTATTTACATAGTAACTTGAT
* * * *
4538407 TTCATTTGTCATTATCAACTTAATTTCTTTACTTAGTAACTTGAT
1 TTCATCTGTCATTATCAA-TCAATTTATTTACATAGTAACTTGAT
4538452 CCATAGAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 17 0.43
45 23 0.57
ACGTcount: A:0.29, C:0.16, G:0.07, T:0.48
Consensus pattern (44 bp):
TTCATCTGTCATTATCAATCAATTTATTTACATAGTAACTTGAT
Found at i:4539951 original size:21 final size:22
Alignment explanation
Indices: 4539927--4539967 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
4539917 ATGGTATATA
4539927 AAAATGTACA-AGTA-ATATAAT
1 AAAAT-TACATAGTATATATAAT
4539948 AAAATTACATAGTATATATA
1 AAAATTACATAGTATATATA
4539968 TACGTTAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (22 bp):
AAAATTACATAGTATATATAAT
Found at i:4540574 original size:21 final size:22
Alignment explanation
Indices: 4540549--4540601 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
4540539 TATACAAAAC
*
4540549 AAAATATACGCATAATATA-TT
1 AAAATATACGCATAATATACAT
** *
4540570 AAAATATATACATAATGTACAT
1 AAAATATACGCATAATATACAT
4540592 AAAATATACG
1 AAAATATACG
4540602 TATATACATA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (22 bp):
AAAATATACGCATAATATACAT
Found at i:4542899 original size:135 final size:137
Alignment explanation
Indices: 4542655--4542939 Score: 538
Period size: 135 Copynumber: 2.1 Consensus size: 137
4542645 TATTGGGCCT
**
4542655 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
4542720 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
4542785 CATATGC
131 CATATGC
4542792 AAGCCCATTTGGGTAACAGTGGTACTGGG-CAGAG-CCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
4542855 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
4542920 CATATGC
131 CATATGC
4542927 AAGCCCATTTGGG
1 AAGCCCATTTGGG
4542940 GAGACTACTC
Statistics
Matches: 146, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
135 114 0.78
136 5 0.03
137 27 0.18
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:4544755 original size:26 final size:26
Alignment explanation
Indices: 4544719--4544779 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
4544709 CATGATATTC
4544719 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
4544745 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
4544771 TTATCATGA
1 TTATCATGA
4544780 TTATCATGGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4544793 original size:35 final size:35
Alignment explanation
Indices: 4544744--4544814 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
4544734 TACCTAACCC
4544744 ATTATCATGAAACATTTACCTAACCCATTATCATG
1 ATTATCATGAAACATTTACCTAACCCATTATCATG
* *
4544779 ATTATCATGGAACATTTACCTAACCTATTATCATG
1 ATTATCATGAAACATTTACCTAACCCATTATCATG
4544814 A
1 A
4544815 AACATTTACC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (35 bp):
ATTATCATGAAACATTTACCTAACCCATTATCATG
Found at i:4544818 original size:26 final size:26
Alignment explanation
Indices: 4544779--4544915 Score: 238
Period size: 26 Copynumber: 5.3 Consensus size: 26
4544769 CATTATCATG
4544779 ATTATCATGGAACATTTACCTAACCT
1 ATTATCATGGAACATTTACCTAACCT
* *
4544805 ATTATCATGAAACATTTACCTAACCC
1 ATTATCATGGAACATTTACCTAACCT
4544831 ATTATCATGGAACATTTACCTAACCT
1 ATTATCATGGAACATTTACCTAACCT
* *
4544857 ATTATCATGAAACATTTACCTAACCC
1 ATTATCATGGAACATTTACCTAACCT
4544883 ATTATCATGGAACATTTACCTAACCT
1 ATTATCATGGAACATTTACCTAACCT
4544909 ATTATCA
1 ATTATCA
4544916 ATTTGTATCA
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (26 bp):
ATTATCATGGAACATTTACCTAACCT
Found at i:4544857 original size:52 final size:52
Alignment explanation
Indices: 4544779--4544915 Score: 274
Period size: 52 Copynumber: 2.6 Consensus size: 52
4544769 CATTATCATG
4544779 ATTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCC
1 ATTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCC
4544831 ATTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCC
1 ATTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCC
4544883 ATTATCATGGAACATTTACCTAACCTATTATCA
1 ATTATCATGGAACATTTACCTAACCTATTATCA
4544916 ATTTGTATCA
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 85 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (52 bp):
ATTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCC
Found at i:4547057 original size:23 final size:21
Alignment explanation
Indices: 4547025--4547088 Score: 65
Period size: 23 Copynumber: 2.9 Consensus size: 21
4547015 AAAAAACTTG
*
4547025 AAATGTATATTTGAAATATTTT
1 AAATATATATTTGAAA-ATTTT
**
4547047 ATAATATATATTTTTTAAATTTT
1 A-AATATATA-TTTGAAAATTTT
*
4547070 AAATATATATTTTAAAATT
1 AAATATATATTTGAAAATT
4547089 ATTTTTCTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 9 0.25
22 9 0.25
23 13 0.36
24 5 0.14
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (21 bp):
AAATATATATTTGAAAATTTT
Found at i:4547077 original size:20 final size:20
Alignment explanation
Indices: 4547052--4547170 Score: 81
Period size: 20 Copynumber: 6.7 Consensus size: 20
4547042 ATTTTATAAT
4547052 ATATATTTTTTAAATTTTAA
1 ATATATTTTTTAAATTTTAA
*
4547072 ATATATATTTT--A----AA
1 ATATATTTTTTAAATTTTAA
4547086 AT-TATTTTTCTAAA-TTTAA
1 ATATATTTTT-TAAATTTTAA
*
4547105 A-ATA-TTATT---TTTT-A
1 ATATATTTTTTAAATTTTAA
4547119 AT-T-TTTTTTAAATTTTAA
1 ATATATTTTTTAAATTTTAA
*
4547137 ATATTATTTTTTAAATATTAA
1 ATA-TATTTTTTAAATTTTAA
4547158 ATATATTTTTTAA
1 ATATATTTTTTAA
4547171 TAATATAAAA
Statistics
Matches: 77, Mismatches: 5, Indels: 34
0.66 0.04 0.29
Matches are distributed among these distances:
13 6 0.08
14 12 0.16
15 3 0.04
16 1 0.01
17 5 0.06
18 7 0.09
19 5 0.06
20 21 0.27
21 17 0.22
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (20 bp):
ATATATTTTTTAAATTTTAA
Found at i:4547108 original size:34 final size:34
Alignment explanation
Indices: 4547040--4547156 Score: 134
Period size: 33 Copynumber: 3.4 Consensus size: 34
4547030 TATATTTGAA
4547040 ATATTTTATAATATATATTTTTTAAATTTTAAATAT
1 ATATTTTA-AATAT-TATTTTTTAAATTTTAAATAT
*
4547076 ATATTTTAAA-ATTATTTTTCTAAATTTAAAATAT
1 ATATTTTAAATATTATTTTT-TAAATTTTAAATAT
**
4547110 -TATTTTTTA-ATT-TTTTTTAAATTTTAAATATT
1 ATATTTTAAATATTATTTTTTAAATTTTAAATA-T
*
4547142 ATTTTTTAAATATTA
1 ATATTTTAAATATTA
4547157 AATATATTTT
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
31 12 0.17
32 6 0.09
33 23 0.33
34 18 0.26
35 2 0.03
36 8 0.12
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (34 bp):
ATATTTTAAATATTATTTTTTAAATTTTAAATAT
Found at i:4547131 original size:31 final size:32
Alignment explanation
Indices: 4547055--4547155 Score: 141
Period size: 31 Copynumber: 3.1 Consensus size: 32
4547045 TTATAATATA
**
4547055 TATTTTTTAAATTTTAAATATATATTTTAAAAT
1 TATTTTTTAAATTTTAAATAT-TATTTTTTAAT
*
4547088 TATTTTTCTAAATTTAAAATATTATTTTTTAAT
1 TATTTTT-TAAATTTTAAATATTATTTTTTAAT
*
4547121 T-TTTTTTAAATTTTAAATATTATTTTTTAAA
1 TATTTTTTAAATTTTAAATATTATTTTTTAAT
4547152 TATT
1 TATT
4547156 AAATATATTT
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
31 24 0.39
32 7 0.11
33 17 0.28
34 13 0.21
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (32 bp):
TATTTTTTAAATTTTAAATATTATTTTTTAAT
Found at i:4547181 original size:22 final size:20
Alignment explanation
Indices: 4547122--4547183 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 20
4547112 TTTTTTAATT
* *
4547122 TTTTTTAAATTTTAAATATTA
1 TTTTTTAAATATAAAATA-TA
*
4547143 TTTTTTAAATATTAAATATA
1 TTTTTTAAATATAAAATATA
4547163 TTTTTTAATAATATAAAATAT
1 TTTTTT-A-AATATAAAATAT
4547184 TTAAATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
20 8 0.22
21 18 0.49
22 11 0.30
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTTTAAATATAAAATATA
Found at i:4547185 original size:20 final size:20
Alignment explanation
Indices: 4547122--4547170 Score: 80
Period size: 21 Copynumber: 2.4 Consensus size: 20
4547112 TTTTTTAATT
*
4547122 TTTTTTAAATTTTAAATATTA
1 TTTTTTAAATATTAAATA-TA
4547143 TTTTTTAAATATTAAATATA
1 TTTTTTAAATATTAAATATA
4547163 TTTTTTAA
1 TTTTTTAA
4547171 TAATATAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTTTTAAATATTAAATATA
Found at i:4547187 original size:51 final size:53
Alignment explanation
Indices: 4547078--4547192 Score: 141
Period size: 51 Copynumber: 2.2 Consensus size: 53
4547068 TTAAATATAT
** * *
4547078 ATTTTAAA-ATTATTTTTCTAAATTTAAAATATTATTTTTTAATTTTTTTTAA
1 ATTTTAAATATTATTTTTCTAAATTTAAAATATTATTTTTTAATTAATATAAA
4547130 ATTTTAAATATTATTTTT-TAAATATT-AAATA-TATTTTTTAA-TAATATAAA
1 ATTTTAAATATTATTTTTCTAAAT-TTAAAATATTATTTTTTAATTAATATAAA
4547180 ATATTTAAATATT
1 AT-TTTAAATATT
4547193 TCAAATATAT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
50 7 0.12
51 20 0.36
52 18 0.32
53 11 0.20
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (53 bp):
ATTTTAAATATTATTTTTCTAAATTTAAAATATTATTTTTTAATTAATATAAA
Found at i:4547267 original size:10 final size:10
Alignment explanation
Indices: 4547225--4547270 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
4547215 TTATTATTAG
4547225 TTTTATAATA
1 TTTTATAATA
4547235 TTTTA-AATA
1 TTTTATAATA
4547244 TTATT-TAATTTA
1 TT-TTATAA--TA
4547256 TTTTATAATA
1 TTTTATAATA
4547266 TTTTA
1 TTTTA
4547271 AATTATGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
9 6 0.19
10 16 0.52
11 2 0.06
12 7 0.23
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TTTTATAATA
Found at i:4547290 original size:29 final size:30
Alignment explanation
Indices: 4547227--4547290 Score: 69
Period size: 31 Copynumber: 2.1 Consensus size: 30
4547217 ATTATTAGTT
* **
4547227 TTATAATATTTTAAATATTATTTAATTTATT
1 TTATAATATTTTAAATATGATTT-ATTTAAA
4547258 TTATAATATTTTAAATTATGA-TT-TTTAAA
1 TTATAATATTTTAAA-TATGATTTATTTAAA
4547287 TTAT
1 TTAT
4547291 TTTTAAAGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 8 0.28
31 17 0.59
32 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (30 bp):
TTATAATATTTTAAATATGATTTATTTAAA
Found at i:4547428 original size:18 final size:18
Alignment explanation
Indices: 4547389--4547446 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
4547379 AAATAAAAAA
*
4547389 ATTTGTTAAAAAAATATTT
1 ATTTGTT-AAAAAATATAT
4547408 ATTTGTTAAAAAATGA-AT
1 ATTTGTTAAAAAAT-ATAT
*
4547426 ATTT-TTAAATATATATAT
1 ATTTGTTAAA-AAATATAT
4547444 ATT
1 ATT
4547447 AAAAAGTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
17 6 0.18
18 20 0.59
19 8 0.24
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (18 bp):
ATTTGTTAAAAAATATAT
Found at i:4547769 original size:62 final size:62
Alignment explanation
Indices: 4547698--4547819 Score: 190
Period size: 62 Copynumber: 2.0 Consensus size: 62
4547688 TATATATATA
* * *
4547698 TTTTTATATTATGCAGATATTAAAATGTCTTCTGAAGCAACTACAGATCACACTTTATCGTT
1 TTTTTATATTATGCAGATATTAAAATGTATTCTGAAGCAAATACAGATCACACTTCATCGTT
* * *
4547760 TTTTTATATTATGCAGATATTAAAATGTATTTTGGAGCAAATACGGATCACACTTCATCG
1 TTTTTATATTATGCAGATATTAAAATGTATTCTGAAGCAAATACAGATCACACTTCATCG
4547820 AGGATGAACG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (62 bp):
TTTTTATATTATGCAGATATTAAAATGTATTCTGAAGCAAATACAGATCACACTTCATCGTT
Found at i:4548075 original size:20 final size:19
Alignment explanation
Indices: 4548033--4548075 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
4548023 TATATATTTT
* *
4548033 TTTATTTTTAATTTAAATT
1 TTTATTTTTAATATAAATA
*
4548052 TTTACTTTTTAATATATATA
1 TTTA-TTTTTAATATAAATA
4548072 TTTA
1 TTTA
4548076 AATAAATTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTATTTTTAATATAAATA
Found at i:4548100 original size:20 final size:18
Alignment explanation
Indices: 4548075--4548111 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
4548065 ATATATATTT
4548075 AAATAAATTCATTTTTTAAC
1 AAATAAA-TC-TTTTTTAAC
4548095 AAATAAATCTTTTTTAA
1 AAATAAATCTTTTTTAA
4548112 TAATTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 2 0.12
20 7 0.41
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATAAATCTTTTTTAAC
Found at i:4548236 original size:14 final size:15
Alignment explanation
Indices: 4548217--4548249 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
4548207 ACCTTTAAAA
4548217 ATAATTTAAAA-ATT
1 ATAATTTAAAATATT
4548231 ATAATTTAAAATATT
1 ATAATTTAAAATATT
4548246 ATAA
1 ATAA
4548250 AACAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATTTAAAATATT
Found at i:4548351 original size:22 final size:21
Alignment explanation
Indices: 4548324--4548393 Score: 88
Period size: 22 Copynumber: 3.2 Consensus size: 21
4548314 AAATATTTAA
*
4548324 ATATTTTATATTATTAAAAAAT
1 ATATTTAATATT-TTAAAAAAT
4548346 ATATTTAATA-TTTAAAAAAT
1 ATATTTAATATTTTAAAAAAT
*
4548366 AATATTTAAAATTTTAAAAATAT
1 -ATATTTAATATTTTAAAAA-AT
4548389 ATATT
1 ATATT
4548394 ATAAAATATT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.21
21 10 0.23
22 22 0.51
23 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATATTTAATATTTTAAAAAAT
Found at i:4548363 original size:21 final size:20
Alignment explanation
Indices: 4548337--4548390 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 20
4548327 TTTTATATTA
4548337 TTAAAAAATATATTTAATAT
1 TTAAAAAATATATTTAATAT
*
4548357 TTAAAAAATAATATTTAAAAT
1 TTAAAAAAT-ATATTTAATAT
*
4548378 TTTAAAAATATAT
1 TTAAAAAATATAT
4548391 ATTATAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 13 0.42
21 18 0.58
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TTAAAAAATATATTTAATAT
Found at i:4548385 original size:23 final size:21
Alignment explanation
Indices: 4548337--4548430 Score: 91
Period size: 22 Copynumber: 4.3 Consensus size: 21
4548327 TTTTATATTA
*
4548337 TTAAAAAATATATTTAATA-T
1 TTAAAAAATATATTTAAAATT
4548357 TTAAAAAATAATATTTAAAATT
1 TTAAAAAAT-ATATTTAAAATT
4548379 TTAAAAATATATATTATAAAATAT
1 TTAAAAA-ATATATT-TAAAAT-T
* * * *
4548403 TTCAAATATAAATTTCAAATT
1 TTAAAAAATATATTTAAAATT
*
4548424 TTTAAAA
1 TTAAAAA
4548431 TTAATCATAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
20 9 0.15
21 15 0.24
22 18 0.29
23 14 0.23
24 6 0.10
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TTAAAAAATATATTTAAAATT
Found at i:4548427 original size:46 final size:42
Alignment explanation
Indices: 4548323--4548430 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 42
4548313 GAAATATTTA
* *
4548323 AATATTTTATATTATTAAAAAATATATTTAATATTTAAAAAAT
1 AATATTTAAAATT-TTAAAAAATATATTTAATATTTAAAAAAT
* *
4548366 AATATTTAAAATTTTAAAAATATATATTATAAAATATTTCAAATAT
1 AATATTTAAAATTTTAAAAA-ATATATT-T--AATATTTAAAAAAT
* *
4548412 AA-ATTTCAAATTTTTAAAA
1 AATATTTAAAATTTTAAAAA
4548431 TTAATCATAA
Statistics
Matches: 55, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
42 7 0.13
43 18 0.33
44 1 0.02
45 15 0.27
46 14 0.25
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (42 bp):
AATATTTAAAATTTTAAAAAATATATTTAATATTTAAAAAAT
Found at i:4548431 original size:22 final size:22
Alignment explanation
Indices: 4548356--4548431 Score: 80
Period size: 23 Copynumber: 3.4 Consensus size: 22
4548346 ATATTTAATA
*
4548356 TTTAAAAAATAATATTTAAAATT
1 TTTAAAATATAA-ATTTAAAATT
* * *
4548379 TTAAAAATATATATTATAAAATA
1 TTTAAAATATAAATT-TAAAATT
* *
4548402 TTTCAAATATAAATTTCAAATT
1 TTTAAAATATAAATTTAAAATT
4548424 TTTAAAAT
1 TTTAAAAT
4548432 TAATCATAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
22 15 0.36
23 27 0.64
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (22 bp):
TTTAAAATATAAATTTAAAATT
Done.