Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 161 of 425
Found at i:49024089 original size:24 final size:24
Alignment explanation
Indices: 49024062--49024254 Score: 295
Period size: 23 Copynumber: 8.2 Consensus size: 24
49024052 GGCTTTGCCT
* *
49024062 CTTTTAATAGCTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
49024086 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
49024109 CTTTTGATCACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
49024133 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
49024156 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
49024180 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
49024204 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
49024227 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
49024250 CTTTT
1 CTTTT
49024255 GCACTTCCTC
Statistics
Matches: 156, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
23 86 0.55
24 70 0.45
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:49024123 original size:47 final size:47
Alignment explanation
Indices: 49024062--49024255 Score: 309
Period size: 47 Copynumber: 4.1 Consensus size: 47
49024052 GGCTTTGCCT
* * * *
49024062 CTTTTAATAGCTGGGGCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
49024109 CTTTTGATCACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
49024156 CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCC
*
49024204 C-TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
49024250 CTTTTG
1 CTTTTG
49024256 CACTTCCTCC
Statistics
Matches: 135, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
46 22 0.16
47 91 0.67
48 22 0.16
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (47 bp):
CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:49024326 original size:9 final size:9
Alignment explanation
Indices: 49024312--49024368 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
49024302 ATCTCATGTG
49024312 CATATCATA
1 CATATCATA
*
49024321 CATATCATGTG
1 CATATCA--TA
49024332 CATATCATA
1 CATATCATA
* *
49024341 CATGTCATGTG
1 CATATCA--TA
49024352 CATATCATA
1 CATATCATA
49024361 CATATCAT
1 CATATCAT
49024369 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:49024328 original size:20 final size:20
Alignment explanation
Indices: 49024300--49024370 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
49024290 GCATTTATGA
*
49024300 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
49024320 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
49024340 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
49024360 ACATATCATGT
1 ACATATCATGT
49024371 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:49024335 original size:11 final size:11
Alignment explanation
Indices: 49024305--49024359 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
49024295 TATGAACATC
49024305 TCATGTGCATA
1 TCATGTGCATA
*
49024316 TCA--TACATA
1 TCATGTGCATA
49024325 TCATGTGCATA
1 TCATGTGCATA
* *
49024336 TCA--TACATG
1 TCATGTGCATA
49024345 TCATGTGCATA
1 TCATGTGCATA
49024356 TCAT
1 TCAT
49024360 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:49027772 original size:30 final size:30
Alignment explanation
Indices: 49027737--49027794 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
49027727 TAGGCACTTC
49027737 CACACGGGT-GATCCACACGCCCGTGTGTGA
1 CACACGGGTAGA-CCACACGCCCGTGTGTGA
* *
49027767 CACACGGGTAGACTACACGTCCGTGTGT
1 CACACGGGTAGACCACACGCCCGTGTGT
49027795 TATGGCCGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCCGTGTGTGA
Found at i:49028969 original size:31 final size:31
Alignment explanation
Indices: 49028931--49029005 Score: 141
Period size: 31 Copynumber: 2.4 Consensus size: 31
49028921 ACGGTTACTG
49028931 GGCCGAAGCCTTTTCATAAATCATATCACTA
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
*
49028962 GGCCGAAGCCTTTTCATAAATCATATCACTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTA
49028993 GGCCGAAGCCTTT
1 GGCCGAAGCCTTT
49029006 ACTGTAAATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTA
Found at i:49029251 original size:25 final size:25
Alignment explanation
Indices: 49029223--49029317 Score: 129
Period size: 25 Copynumber: 3.8 Consensus size: 25
49029213 CTCTTTTAAT
49029223 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
* * *
49029248 AACTGAGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
49029273 AACTGGGGCAAAGCCC-TTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTTGA-TA
*
49029298 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
49029318 AGCACTTCCT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
24 3 0.05
25 54 0.90
26 3 0.05
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:49029277 original size:50 final size:50
Alignment explanation
Indices: 49029223--49029317 Score: 147
Period size: 50 Copynumber: 1.9 Consensus size: 50
49029213 CTCTTTTAAT
*
49029223 AACTGGGGCAAAGCCCTTTT-TGATAAACTGAGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAG-TAAACTGAGGCAAAGCCCTTTTCGGTA
* *
49029273 AACTGGGGCAAAGCCCTTTTCAGTAAACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTTCAGTAAACTGAGGCAAAGCCCTTTT
49029318 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
50 40 0.98
51 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (50 bp):
AACTGGGGCAAAGCCCTTTTCAGTAAACTGAGGCAAAGCCCTTTTCGGTA
Found at i:49030185 original size:27 final size:27
Alignment explanation
Indices: 49030123--49030200 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
49030113 GGGCATATTC
* *
49030123 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTATAGGGGTATTACG
*
49030150 GTCACTTTACCCTATAGGGGCT-TTACG
1 GTCATTTTACCCTATAGGGG-TATTACG
*
49030177 GTCTTTTTA-CCTATTAGGGGTATT
1 GTCATTTTACCCTA-TAGGGGTATT
49030201 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 5 0.12
27 37 0.86
28 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTACG
Found at i:49030457 original size:27 final size:27
Alignment explanation
Indices: 49030248--49030573 Score: 171
Period size: 27 Copynumber: 12.1 Consensus size: 27
49030238 TACAAACCAA
** * *
49030248 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTGGTAATTTTGTAAATCAAG
* *
49030275 GGTATTCT-ATAATTTT-TAAAAGTCAAG
1 GGTATTTTGGTAATTTTGT-AAA-TCAAG
*
49030302 GGTATTTCT-GTAATTTTGTAAATCAGG
1 GGTATTT-TGGTAATTTTGTAAATCAAG
** * *
49030329 GGTATTTTGGTAATTTTACAAATTAGG
1 GGTATTTTGGTAATTTTGTAAATCAAG
* * *
49030356 GGTA-TTTGGTAATTTCT-CAAA-CCAT
1 GGTATTTTGGTAATTT-TGTAAATCAAG
** *
49030381 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTGGTAATTTTGTAAATC-AAG
49030408 GGTATTTTGGTAATTTTGTAAATCAAG
1 GGTATTTTGGTAATTTTGTAAATCAAG
* *
49030435 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTGGTAATTTTGTAAATCAAG
**** * *
49030462 GGTAAAACGGTAATTCTGTAAATCGAG
1 GGTATTTTGGTAATTTTGTAAATCAAG
**** * *
49030489 GGTAAAACGGTAATTCTGTGAATCAAG
1 GGTATTTTGGTAATTTTGTAAATCAAG
*** * * * *
49030516 GGTAAAATGGCAATTCTATAAATCGAG
1 GGTATTTTGGTAATTTTGTAAATCAAG
**** *
49030543 GGTAAAACGGTAATTCTGTAAATCAAG
1 GGTATTTTGGTAATTTTGTAAATCAAG
49030570 GGTA
1 GGTA
49030574 AAACGTAATT
Statistics
Matches: 249, Mismatches: 40, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
25 6 0.02
26 42 0.17
27 188 0.76
28 12 0.05
29 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTGTAAATCAAG
Found at i:49030465 original size:54 final size:55
Alignment explanation
Indices: 49030248--49030451 Score: 201
Period size: 54 Copynumber: 3.8 Consensus size: 55
49030238 TACAAACCAA
** * * * *
49030248 GGTATTTCAGTAATTTTGTAAACCAATGGTATTCTA-TAATTTTTA-AAAGTC-AAG
1 GGTATTTTGGTAATTTTGTAAATCAAGGGTATTTTAGTAA-TTTTACAAA-TCTAGG
* *
49030302 GGTATTTCT-GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAAT-TAGG
1 GGTATTT-TGGTAATTTTGTAAATCAAGGGTATTTTAGTAATTTTACAAATCTAGG
* * * *
49030356 GGTA-TTTGGTAATTTCT-CAAA-CCATGGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTGGTAATTT-TGTAAATCAAGGGTATTTTAGTAATTTTACAAATCTAGG
49030408 GGTATTTTGGTAATTTTGTAAATCAAGGGTATTTTAGTAATTTT
1 GGTATTTTGGTAATTTTGTAAATCAAGGGTATTTTAGTAATTTT
49030452 GTAAATCGAG
Statistics
Matches: 125, Mismatches: 15, Indels: 20
0.78 0.09 0.12
Matches are distributed among these distances:
52 33 0.26
53 26 0.21
54 60 0.48
55 6 0.05
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (55 bp):
GGTATTTTGGTAATTTTGTAAATCAAGGGTATTTTAGTAATTTTACAAATCTAGG
Found at i:49030503 original size:81 final size:81
Alignment explanation
Indices: 49030416--49030589 Score: 251
Period size: 81 Copynumber: 2.2 Consensus size: 81
49030406 GGGGTATTTT
* *** * * *
49030416 GGTAATTTTGTAAATCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGT
1 GGTAATTCTGTAAATCAAGGGTAAAATAGCAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
*
49030481 AAATCGAGGGTAAAAC
66 AAATCAAGGGTAAAAC
* *
49030497 GGTAATTCTGTGAATCAAGGGTAAAATGGCAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
1 GGTAATTCTGTAAATCAAGGGTAAAATAGCAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
49030562 AAATCAAGGGTAAAAC
66 AAATCAAGGGTAAAAC
49030578 -GTAATTCTGTAA
1 GGTAATTCTGTAA
49030590 CTTTGGTAAT
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 11 0.13
81 71 0.87
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.30
Consensus pattern (81 bp):
GGTAATTCTGTAAATCAAGGGTAAAATAGCAATTCTATAAATCGAGGGTAAAACGGTAATTCTGT
AAATCAAGGGTAAAAC
Found at i:49030574 original size:27 final size:27
Alignment explanation
Indices: 49030416--49030589 Score: 215
Period size: 27 Copynumber: 6.5 Consensus size: 27
49030406 GGGGTATTTT
* ****
49030416 GGTAATTTTGTAAATCAAGGGTATTTT
1 GGTAATTCTGTAAATCAAGGGTAAAAC
* * *
49030443 AGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAAC
*
49030470 GGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAAC
* *
49030497 GGTAATTCTGTGAATCAAGGGTAAAAT
1 GGTAATTCTGTAAATCAAGGGTAAAAC
* * *
49030524 GGCAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAAC
49030551 GGTAATTCTGTAAATCAAGGGTAAAAC
1 GGTAATTCTGTAAATCAAGGGTAAAAC
49030578 -GTAATTCTGTAA
1 GGTAATTCTGTAA
49030590 CTTTGGTAAT
Statistics
Matches: 128, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 12 0.09
27 116 0.91
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.30
Consensus pattern (27 bp):
GGTAATTCTGTAAATCAAGGGTAAAAC
Found at i:49030823 original size:17 final size:18
Alignment explanation
Indices: 49030801--49030846 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
49030791 AACTTATCCA
49030801 ATTGGGCCCATA-GGCCC
1 ATTGGGCCCATATGGCCC
*
49030818 ATTGGGCCCACATGGCCC
1 ATTGGGCCCATATGGCCC
* *
49030836 TTTCGGCCCAT
1 ATTGGGCCCAT
49030847 GGCGGCCCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.15, C:0.37, G:0.26, T:0.22
Consensus pattern (18 bp):
ATTGGGCCCATATGGCCC
Found at i:49037831 original size:48 final size:49
Alignment explanation
Indices: 49037718--49038027 Score: 518
Period size: 49 Copynumber: 6.4 Consensus size: 49
49037708 TACATATATG
* * *
49037718 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
49037767 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
49037815 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
49037864 TGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
49037911 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
49037960 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
49038009 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
49038028 TAATGTAAAA
Statistics
Matches: 250, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
47 13 0.05
48 112 0.45
49 125 0.50
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:49037916 original size:96 final size:97
Alignment explanation
Indices: 49037718--49038027 Score: 532
Period size: 96 Copynumber: 3.2 Consensus size: 97
49037708 TACATATATG
* * * *
49037718 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
49037783 GGCCGATGTGATGAATGTGAAAGTGATGTATA
66 GGCCGATGTGATGAATGTGAAAGTGATGTATA
*
49037815 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGAT-AGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
49037879 GGCCGATGTGATGAATGTGAAAGTGATGTATA
66 GGCCGATGTGATGAATGTGAAAGTGATGTATA
* *
49037911 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
49037976 GGCCGATGTGGTGAATGTGAAAGTGTATGTATA
66 GGCCGATGTGATGAATGTGAAAGTG-ATGTATA
49038009 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
49038028 TAATGTAAAA
Statistics
Matches: 204, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
96 96 0.47
97 83 0.41
98 25 0.12
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (97 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGATGTATA
Found at i:49038179 original size:37 final size:37
Alignment explanation
Indices: 49038129--49038250 Score: 226
Period size: 37 Copynumber: 3.3 Consensus size: 37
49038119 GGAATATGTT
*
49038129 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
49038166 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
49038203 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
49038240 CCGGGTAAGAC
1 CCGGGTAAGAC
49038251 TTCTTTTATA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 83 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:49040387 original size:29 final size:29
Alignment explanation
Indices: 49040345--49040450 Score: 194
Period size: 29 Copynumber: 3.7 Consensus size: 29
49040335 GCGAATGATT
49040345 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
49040374 GAGGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
49040403 GAGGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTATGTGTGCGAGATCAGTAATC
*
49040432 GAGGCACTGTGTGTGCGAG
1 GAGGCACTATGTGTGCGAG
49040451 TTTTTCAACA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (29 bp):
GAGGCACTATGTGTGCGAGATCAGTAATC
Found at i:49043763 original size:49 final size:49
Alignment explanation
Indices: 49043707--49044066 Score: 625
Period size: 49 Copynumber: 7.4 Consensus size: 49
49043697 TACATATATG
* * *
49043707 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
49043756 TGTGATAAGG-CTAATGG-CGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
49043803 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
49043852 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
49043901 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
49043950 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
49043999 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
49044048 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
49044067 TAATGTAAAA
Statistics
Matches: 302, Mismatches: 7, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
47 37 0.12
48 13 0.04
49 252 0.83
ACGTcount: A:0.28, C:0.08, G:0.34, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:49044218 original size:37 final size:37
Alignment explanation
Indices: 49044168--49044289 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
49044158 GGAATATGTT
*
49044168 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
49044205 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
49044242 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
49044279 CCGAGTAAGAC
1 CCGGGTAAGAC
49044290 TTCTTTTATA
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.26, C:0.20, G:0.33, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:49047506 original size:50 final size:50
Alignment explanation
Indices: 49047431--49047531 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
49047421 ATGAAACTAG
49047431 ATTCAATAAGATTTAATCTCATATCTTATTAAGTCTCTAATTCAATTTCC
1 ATTCAATAAGATTTAATCTCATATCTTATTAAGTCTCTAATTCAATTTCC
*
49047481 ATTCAATAAGATTTAATCTCATATCTTATTAAGTCTCTAATTCATTTTCC
1 ATTCAATAAGATTTAATCTCATATCTTATTAAGTCTCTAATTCAATTTCC
49047531 A
1 A
49047532 CAATTTTTGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.34, C:0.18, G:0.04, T:0.45
Consensus pattern (50 bp):
ATTCAATAAGATTTAATCTCATATCTTATTAAGTCTCTAATTCAATTTCC
Found at i:49048045 original size:43 final size:43
Alignment explanation
Indices: 49047981--49048063 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
49047971 AACATGTATA
**
49047981 CATCCATAATGAACTTGGACCTCTCAACGAGCCCGGATGCTTG
1 CATCCATAATGAACTCAGACCTCTCAACGAGCCCGGATGCTTG
*
49048024 CATCCATAATGAACTCAGACCTCTCAACGAGCTCGGATGC
1 CATCCATAATGAACTCAGACCTCTCAACGAGCCCGGATGC
49048064 CACATATATC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (43 bp):
CATCCATAATGAACTCAGACCTCTCAACGAGCCCGGATGCTTG
Found at i:49048147 original size:43 final size:42
Alignment explanation
Indices: 49048029--49048147 Score: 141
Period size: 43 Copynumber: 2.8 Consensus size: 42
49048019 GCTTGCATCC
* * * *
49048029 ATAATGAACTCAGACCTCTCAACGAGCTCGGATGCCACATAT
1 ATAATGAACTCGGACCACTCAACGAGCTTGGATTCCACATAT
* * *
49048071 ATCATGAACTTGGACCACTCAACAAG-TTCGGATTCTCACATAT
1 ATAATGAACTCGGACCACTCAACGAGCTT-GGATTC-CACATAT
*
49048114 ATAACGAACTCGGACCACTCAACGAGCTTGGATT
1 ATAATGAACTCGGACCACTCAACGAGCTTGGATT
49048148 TCTAACTTCC
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
41 1 0.02
42 26 0.41
43 34 0.54
44 2 0.03
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
ATAATGAACTCGGACCACTCAACGAGCTTGGATTCCACATAT
Found at i:49051251 original size:48 final size:48
Alignment explanation
Indices: 49051199--49051384 Score: 153
Period size: 48 Copynumber: 3.9 Consensus size: 48
49051189 TCTATGCCAG
* *
49051199 GGACATGGCATCGACATCGATATGAGATCTTGTATAAGATCATGTTTA
1 GGACATGGCATCGACATCGATATGAGATCTCGTATAAGACCATGTTTA
* * * * * * * *
49051247 GGACATGGCATCAACATC-ATTACGAGACCCCATATAAAACCACGTTTG
1 GGACATGGCATCGACATCGA-TATGAGATCTCGTATAAGACCATGTTTA
* * * *
49051295 GGACCTGGCATCGACGTCG-TATGAGATCTCGTATAAGACCATATCTA
1 GGACATGGCATCGACATCGATATGAGATCTCGTATAAGACCATGTTTA
* * * * * *
49051342 GGATATGGCATC-AGCATTGATTTGAGATCCCATGTAAGACCAT
1 GGACATGGCATCGA-CATCGATATGAGATCTCGTATAAGACCAT
49051385 ATCTGGGATA
Statistics
Matches: 104, Mismatches: 30, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
46 1 0.01
47 33 0.32
48 70 0.67
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (48 bp):
GGACATGGCATCGACATCGATATGAGATCTCGTATAAGACCATGTTTA
Found at i:49056703 original size:42 final size:41
Alignment explanation
Indices: 49056591--49056712 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 41
49056581 CACCATACCA
* * *
49056591 ATGCCATATCCCAGATATGGTCTTACATTGGATCTGATATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAATCTCATATCG
* *
49056633 ATGCCAATAGCCTA-ACTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACACGAA-TCTCATATCG
*
49056676 ATGCCATATCCCAGATATGGTCTTACACATAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACAC-GAATCTCA
49056713 AATAACCCAA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATCTCATATCG
Found at i:49062261 original size:90 final size:89
Alignment explanation
Indices: 49062108--49062278 Score: 324
Period size: 90 Copynumber: 1.9 Consensus size: 89
49062098 ACACTGATAC
49062108 TGTAACACCCCAATCCCGTGACCGTTACCGGAAATCGAATACGAGGTATTACCGAGCTTACTTCA
1 TGTAACACCCCAATCCCGTGACCGTTACCGGAAATCGAATACGAGGTATTACCGAGCTTACTTCA
49062173 TTTATTTCCCCCTATTTTTGTCAAA
66 TTTATTT-CCCCTATTTTTGTCAAA
*
49062198 TGTAACACCCCAATCCCGTGACCGTTACCGGAAATCGAATACGAGGTGTTACCGAGCTTACTTCA
1 TGTAACACCCCAATCCCGTGACCGTTACCGGAAATCGAATACGAGGTATTACCGAGCTTACTTCA
49062263 TTTATTTCCCCTATTT
66 TTTATTTCCCCTATTT
49062279 ATTATTTAAT
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
89 9 0.11
90 71 0.89
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (89 bp):
TGTAACACCCCAATCCCGTGACCGTTACCGGAAATCGAATACGAGGTATTACCGAGCTTACTTCA
TTTATTTCCCCTATTTTTGTCAAA
Found at i:49063847 original size:29 final size:29
Alignment explanation
Indices: 49063813--49063915 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
49063803 TAATCAGCCG
** *
49063813 CGCACACTTAGTGCCATATACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCT
49063842 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
49063871 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAGCT
*
49063900 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
49063916 ATCTCTTAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
28 3 0.04
29 66 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCT
Found at i:49078394 original size:42 final size:42
Alignment explanation
Indices: 49078338--49078423 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
49078328 TGGAGTCTAA
49078338 AAATACATGCCATTTTAGAACCTATGATAATGTGATGTCTCT
1 AAATACATGCCATTTTAGAACCTATGATAATGTGATGTCTCT
49078380 AAATACATGCCATTTTAGAACCTATGATAATGTGATGTCTCT
1 AAATACATGCCATTTTAGAACCTATGATAATGTGATGTCTCT
49078422 AA
1 AA
49078424 CTTAATGTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (42 bp):
AAATACATGCCATTTTAGAACCTATGATAATGTGATGTCTCT
Found at i:49083173 original size:28 final size:27
Alignment explanation
Indices: 49083110--49083179 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
49083100 ATAGTGAGTC
49083110 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
49083137 AGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
49083165 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49083180 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:49095155 original size:49 final size:49
Alignment explanation
Indices: 49095083--49095309 Score: 278
Period size: 49 Copynumber: 4.6 Consensus size: 49
49095073 ATGATACGCA
*
49095083 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAATCTGGTACACG
* * * *
49095132 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AACAATCTGGTACACG
* * * * *
49095182 TAATAGCCTGCACTTAGTACTACACACGTGATCGAAGTC-AT-TGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA--CAATCTG-GTACACG
* *
49095233 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAATCTGGTACACG
*
49095282 TAGTAGCTTGCACTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
49095310 TGTATTCACA
Statistics
Matches: 151, Mismatches: 20, Indels: 14
0.82 0.11 0.08
Matches are distributed among these distances:
48 1 0.01
49 63 0.42
50 51 0.34
51 35 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAATCTGGTACACG
Found at i:49095566 original size:29 final size:29
Alignment explanation
Indices: 49095533--49095590 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
49095523 CAAACTTTAG
49095533 AAATGTTATAATTTAGTCCAAAAGCTTTT
1 AAATGTTATAATTTAGTCCAAAAGCTTTT
49095562 AAATGTTATAATTTAGTCCAAAAGCTTTT
1 AAATGTTATAATTTAGTCCAAAAGCTTTT
49095591 CTTTTCCCCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (29 bp):
AAATGTTATAATTTAGTCCAAAAGCTTTT
Found at i:49100426 original size:40 final size:40
Alignment explanation
Indices: 49100381--49100548 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
49100371 CGGAATATAA
49100381 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
49100421 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
49100461 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
49100501 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
49100541 CCGGATAT
1 CCGGATAT
49100549 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49100531 original size:80 final size:80
Alignment explanation
Indices: 49100397--49100546 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
49100387 ATAACCACGT
* *
49100397 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
49100462 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
49100477 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
49100540 CCCGGAT
64 CCCGGAT
49100547 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:49102936 original size:80 final size:80
Alignment explanation
Indices: 49102852--49103000 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
49102842 TATGGTAACC
* * * *
49102852 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
49102916 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
49102932 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
49102997 CCGG
66 CCGG
49103001 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:49102942 original size:40 final size:38
Alignment explanation
Indices: 49102893--49103000 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
49102883 ATCACGATTT
*
49102893 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
49102933 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
49102973 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
49103001 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:49110960 original size:40 final size:40
Alignment explanation
Indices: 49110873--49111084 Score: 212
Period size: 40 Copynumber: 5.3 Consensus size: 40
49110863 CCTTCGGAAT
* * *
49110873 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
49110912 -GAAGCCCGGTTATAGTGACTCGCACAATTGCCTTCGGGTC
1 TTAA-CCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* ** *
49110952 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * *
49110992 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
* * * * *
49111032 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGAC
1 TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
*
49111072 TTAGCCCGGATAT
1 TTAACCCGGATAT
49111085 CATTCCAATG
Statistics
Matches: 144, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
38 2 0.01
40 140 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TTAACCCGGATATAATAACTCGCACAAATGCCTTCGGGTC
Found at i:49110998 original size:80 final size:80
Alignment explanation
Indices: 49110873--49111084 Score: 248
Period size: 80 Copynumber: 2.7 Consensus size: 80
49110863 CCTTCGGAAT
* * * ** * ***
49110873 TTAA-CCGGATATAATGACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
49110937 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * *
49110952 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
49111017 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
49111032 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
49111085 CATTCCAATG
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 4 0.04
80 104 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCGCAC
GAATGCCTTCGGGTC
Found at i:49114739 original size:40 final size:40
Alignment explanation
Indices: 49114680--49114865 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
49114670 CATTGGAATG
* * * *
49114680 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* *
49114720 ATATCCGGGCTAAGACCCGAA-GC-ATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTTATT
* **
49114759 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
* * * * *
49114799 AAATCCGGGTTAAGACCCGAAGGCAATCGTGCGAA-TCACT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-AAGTTATT
* * * *
49114839 ATAACCGGGCTAGGTCCCGAAGACAAT
1 ATATCCGGGCTAAGACCCGAAGGCAAT
49114866 CGAGCGAGTC
Statistics
Matches: 120, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
38 3 0.03
39 31 0.26
40 82 0.68
41 4 0.03
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTATT
Found at i:49114780 original size:79 final size:80
Alignment explanation
Indices: 49114680--49114832 Score: 209
Period size: 79 Copynumber: 1.9 Consensus size: 80
49114670 CATTGGAATG
* * ** *
49114680 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTAATTATATCCGGGCTAAGACCCGAA-GCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
*
49114744 TTCGTGCGAGTTGTT
66 ATCGTGCGAGTTGTT
* * * *
49114759 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
49114824 ATCGTGCGA
66 ATCGTGCGA
49114833 ATCACTATAA
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 52 0.83
80 11 0.17
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTAACCAAATCCGGGCTAAGACCCGAAGGCA
ATCGTGCGAGTTGTT
Found at i:49119831 original size:40 final size:40
Alignment explanation
Indices: 49119787--49119874 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
49119777 TCGCTCGAAA
* * *
49119787 GCCTTCGGGACATAGCCCGG-TTATAATAGCTCGCACAAAT
1 GCCTTCGGGACATAACCCGGATT-TAAGAACTCGCACAAAT
* *
49119827 GCCTTCGGGACTTAACCCGGATTTAGGAACTCGCACAAAT
1 GCCTTCGGGACATAACCCGGATTTAAGAACTCGCACAAAT
49119867 GCCTTCGG
1 GCCTTCGG
49119875 ATCTTAGTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 40 0.95
41 2 0.05
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACATAACCCGGATTTAAGAACTCGCACAAAT
Found at i:49127858 original size:29 final size:29
Alignment explanation
Indices: 49127819--49127897 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
49127809 CTTAATAATC
*
49127819 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
49127849 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
49127878 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
49127898 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:49128555 original size:2 final size:2
Alignment explanation
Indices: 49128537--49128574 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
49128527 TGATGGCCGA
* *
49128537 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
49128575 CAACTATACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49130008 original size:40 final size:40
Alignment explanation
Indices: 49129927--49130147 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
49129917 AAACCAAGTA
** * *
49129927 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
49129966 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
49130006 CCTCCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
49130046 CTTTTGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
49130086 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
49130126 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
49130148 CAATCCGAAT
Statistics
Matches: 163, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 26 0.16
40 137 0.84
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:49132947 original size:37 final size:37
Alignment explanation
Indices: 49132883--49133028 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
49132873 AGCTCAGATG
* * *
49132883 AAATCTCCACACGAAGTTATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
49132920 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
49132957 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
49132994 TAATCTCCATACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
49133029 ATATATTTCC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:49133230 original size:48 final size:48
Alignment explanation
Indices: 49133169--49133941 Score: 1154
Period size: 48 Copynumber: 16.0 Consensus size: 48
49133159 ATATACACAC
* *
49133169 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
49133217 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
49133265 ATCTCATATATATATTTCACATTAACCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
49133315 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
49133363 ATCTCATATATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC------ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
49133417 ATCTCATATATATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
49133467 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATCCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
49133515 ATCTCATACATAATTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
49133563 ATCTCATACATAATTCACACTAGCCATTCGGCTTTACCACATATAAAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
49133611 ATCTCATACATAATTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
49133659 ATCTCATATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
49133709 ATCTCATACATATTTCACATTAGCCATTCGGTTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
49133757 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
49133805 AT-T--T-C--A---CAC--TAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
49133842 ATCTCATATATATATTTCACATTAGTCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
49133892 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
49133940 AT
1 AT
49133942 ATTTATCTTG
Statistics
Matches: 675, Mismatches: 27, Indels: 46
0.90 0.04 0.06
Matches are distributed among these distances:
37 30 0.04
38 1 0.00
39 3 0.00
42 2 0.00
44 1 0.00
45 2 0.00
47 1 0.00
48 416 0.62
50 172 0.25
54 47 0.07
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:49133328 original size:98 final size:98
Alignment explanation
Indices: 49133178--49133941 Score: 1193
Period size: 98 Copynumber: 7.9 Consensus size: 98
49133168 CATCTCCTAC
* * *
49133178 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
49133243 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
49133276 ATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
49133341 TTCGGCTTTACCACATATACATATCTCATATATATAT
66 TTCGGCTTTACCACATATACATATCTC----ATATAT
*
49133378 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
* *
49133443 CATTCGACTTTACCACATATACATATCTC--ATAC
64 CATTCGGCTTTACCACATATACATATCTCATATAT
* *
49133476 ATATTTCACATTAGCCATTCGGCTTTACCACATATCCATATCTCATACATAATTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
49133541 TTCGGCTTTACCACATATACATATCTCATACAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* * * *
49133574 A-A-TTCACACTAGCCATTCGGCTTTACCACATATAAATATCTCATACATAATTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
49133637 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
49133670 ATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
* *
49133735 TTCGGTTTTACCACATATACATATCTC--ATAC
66 TTCGGCTTTACCACATATACATATCTCATATAT
49133766 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT-T--T-C--A---CAC--TAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
49133820 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
*
49133853 ATATTTCACATTAGTCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
49133918 TTCGGCTTTACCACATATACATAT
66 TTCGGCTTTACCACATATACATAT
49133942 ATTTATCTTG
Statistics
Matches: 614, Mismatches: 29, Indels: 46
0.89 0.04 0.07
Matches are distributed among these distances:
85 32 0.05
87 46 0.07
88 1 0.00
90 2 0.00
91 1 0.00
92 1 0.00
93 2 0.00
95 1 0.00
96 181 0.29
97 2 0.00
98 250 0.41
102 49 0.08
104 46 0.07
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:49133350 original size:146 final size:146
Alignment explanation
Indices: 49133169--49133941 Score: 1207
Period size: 146 Copynumber: 5.3 Consensus size: 146
49133159 ATATACACAC
* *
49133169 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
*
49133234 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGC
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
49133299 TTTACCACATATACAT
131 TTTACCACATATACAT
49133315 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC------ATATAT
*
49133380 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCA
60 ATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCA
*
49133445 TTCGACTTTACCACATATACAT
125 TTCGGCTTTACCACATATACAT
* * *
49133467 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATCCATATCTCATACATAATTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
* * *
49133532 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATA-A-TTCACACTAGCCATTCGGC
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
*
49133595 TTTACCACATATAAAT
131 TTTACCACATATACAT
* *
49133611 ATCTCATACATAATTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATATATTT
* *
49133676 CACAGTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCG
64 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG
*
49133739 GTTTTACCACATATACAT
129 GCTTTACCACATATACAT
49133757 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC--AT--ATA---C----ATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
*
49133811 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGTCATTCGGC
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
49133876 TTTACCACATATACAT
131 TTTACCACATATACAT
49133892 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
49133942 ATTTATCTTG
Statistics
Matches: 581, Mismatches: 29, Indels: 40
0.89 0.04 0.06
Matches are distributed among these distances:
133 43 0.07
135 80 0.14
137 2 0.00
139 4 0.01
142 3 0.01
144 87 0.15
145 2 0.00
146 218 0.38
152 142 0.24
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (146 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGC
TTTACCACATATACAT
Found at i:49133807 original size:85 final size:86
Alignment explanation
Indices: 49133714--49133893 Score: 308
Period size: 85 Copynumber: 2.1 Consensus size: 86
49133704 TACATATCTC
* *
49133714 ATACATATTTCACATTAGCCATTCGGTTTTACCACATATACATATCTC-ATACATATTTCACATT
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATT
49133778 AGCCATTCGGCTTTACCACAT
66 AGCCATTCGGCTTTACCACAT
*
49133799 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACAT
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACAT
*
49133864 TAGTCATTCGGCTTTACCACAT
65 TAGCCATTCGGCTTTACCACAT
49133886 ATACATAT
1 ATACATAT
49133894 CTCATACATA
Statistics
Matches: 89, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
85 46 0.52
87 43 0.48
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (86 bp):
ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATT
AGCCATTCGGCTTTACCACAT
Found at i:49133812 original size:37 final size:37
Alignment explanation
Indices: 49133762--49133843 Score: 155
Period size: 37 Copynumber: 2.2 Consensus size: 37
49133752 TACATATCTC
*
49133762 ATACATATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACAT
49133799 ATACATATTTCACACTAGCCATTCGGCTTTACCACAT
1 ATACATATTTCACACTAGCCATTCGGCTTTACCACAT
49133836 ATACATAT
1 ATACATAT
49133844 CTCATATATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (37 bp):
ATACATATTTCACACTAGCCATTCGGCTTTACCACAT
Found at i:49133857 original size:50 final size:50
Alignment explanation
Indices: 49133796--49133941 Score: 251
Period size: 50 Copynumber: 3.0 Consensus size: 50
49133786 GGCTTTACCA
*
49133796 CATATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCT
1 CATATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
* *
49133846 CATATATATATTTCACATTAGTCATTCGGCTTTACCACATATACATATCT
1 CATATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
49133896 C--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 CATATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
49133942 ATTTATCTTG
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
48 43 0.47
50 48 0.53
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.36
Consensus pattern (50 bp):
CATATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
Found at i:49133906 original size:135 final size:133
Alignment explanation
Indices: 49133663--49133941 Score: 495
Period size: 135 Copynumber: 2.1 Consensus size: 133
49133653 ATACATATCT
* *
49133663 CATATATATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
1 CATATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
*
49133728 TTAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
66 TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
49133793 CCA
131 CCA
*
49133796 CATATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCA
1 CATATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCA
*
49133861 CATTAGTCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
64 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
49133926 TACCA
129 TACCA
49133931 CATATACATAT
1 CATATACATAT
49133942 ATTTATCTTG
Statistics
Matches: 139, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
133 49 0.35
135 90 0.65
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (133 bp):
CATATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACA
TTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
CCA
Found at i:49141220 original size:53 final size:53
Alignment explanation
Indices: 49141038--49141244 Score: 225
Period size: 53 Copynumber: 3.8 Consensus size: 53
49141028 ATTAGGGTTT
* * * * *
49141038 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
49141092 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
49141147 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
49141200 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
49141245 TAAGAAGGAA
Statistics
Matches: 124, Mismatches: 27, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
53 46 0.37
54 38 0.31
55 40 0.32
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:49148626 original size:52 final size:52
Alignment explanation
Indices: 49148568--49148666 Score: 135
Period size: 52 Copynumber: 1.9 Consensus size: 52
49148558 ATAAACTACG
* * * *
49148568 TAAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTAGTTCA
1 TAAGGCAAAGATACCACGTAAGACCATGCCAAGACAAGGCAATGGTAGTTCA
* * *
49148620 TAAGGCAAGGATACCACGTAAGACCATGTCAAGACAAGGCTATGGTA
1 TAAGGCAAAGATACCACGTAAGACCATGCCAAGACAAGGCAATGGTA
49148667 AGTTTAAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 40 1.00
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.18
Consensus pattern (52 bp):
TAAGGCAAAGATACCACGTAAGACCATGCCAAGACAAGGCAATGGTAGTTCA
Found at i:49156698 original size:21 final size:23
Alignment explanation
Indices: 49156669--49156710 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
49156659 TTTGTTGATA
49156669 ATGTATTGG-TAT-AAATGGTGT
1 ATGTATTGGTTATGAAATGGTGT
*
49156690 ATGTTTTGGTTATGAAATGGT
1 ATGTATTGGTTATGAAATGGT
49156711 TGGAATTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 3 0.17
23 7 0.39
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (23 bp):
ATGTATTGGTTATGAAATGGTGT
Found at i:49161268 original size:17 final size:17
Alignment explanation
Indices: 49161246--49161280 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
49161236 AATGCCGTAC
49161246 ACCTTTGTATTGGACTG
1 ACCTTTGTATTGGACTG
49161263 ACCTTTGTATTGGACTG
1 ACCTTTGTATTGGACTG
49161280 A
1 A
49161281 GCTCAGTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (17 bp):
ACCTTTGTATTGGACTG
Found at i:49163813 original size:24 final size:24
Alignment explanation
Indices: 49163762--49163928 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
49163752 GCTTTATCAT
* *
49163762 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
49163787 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
49163811 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
49163834 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
49163858 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
49163882 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
49163906 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
49163929 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:49163862 original size:71 final size:71
Alignment explanation
Indices: 49163761--49163928 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
49163751 TGCTTTATCA
*
49163761 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
49163825 AGCCCTTT
64 AGCCCTTT
* * **
49163833 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
49163898 CCCTTT
66 CCCTTT
49163904 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
49163929 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:49164003 original size:20 final size:20
Alignment explanation
Indices: 49163978--49164025 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
49163968 TTATGATTAC
49163978 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
49163998 ATCATGTGCATATCATACGT
1 ATCATGTGCATATCATACAT
*
49164018 GTCATGTG
1 ATCATGTG
49164026 TGACATCCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:49165625 original size:30 final size:30
Alignment explanation
Indices: 49165589--49165689 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
49165579 GACAAGATTG
* * *
49165589 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
49165619 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
49165647 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
49165676 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49165690 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:49165701 original size:29 final size:28
Alignment explanation
Indices: 49165618--49165693 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
49165608 AAAATTGTAC
* *
49165618 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
49165646 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
49165675 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
49165694 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:49173477 original size:30 final size:30
Alignment explanation
Indices: 49173441--49173541 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
49173431 GACAAGATTG
* * *
49173441 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
49173471 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
49173499 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
49173528 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49173542 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:49173553 original size:29 final size:28
Alignment explanation
Indices: 49173470--49173545 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
49173460 AAAATTGTAC
* *
49173470 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
49173498 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
49173527 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
49173546 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:49175047 original size:25 final size:25
Alignment explanation
Indices: 49175015--49175062 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
49175005 ATACATAAAC
* * *
49175015 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
49175040 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
49175063 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:49176320 original size:27 final size:27
Alignment explanation
Indices: 49176300--49176747 Score: 521
Period size: 27 Copynumber: 16.6 Consensus size: 27
49176290 AGGGTATTTT
*
49176300 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
49176327 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
49176354 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
49176381 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
49176408 -GATAATTATGTAAATTG-GGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * * *
49176434 GGTAATTATGTAAAT-TAGGGGTAAAAT
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
49176461 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
49176488 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
49176515 GGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
49176542 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
49176569 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
49176596 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
49176623 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
49176650 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
49176677 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
49176704 AGTAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
49176731 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
49176748 GGAGTACTTT
Statistics
Matches: 369, Mismatches: 41, Indels: 22
0.85 0.09 0.05
Matches are distributed among these distances:
26 26 0.07
27 339 0.92
28 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:49176778 original size:81 final size:81
Alignment explanation
Indices: 49176301--49176747 Score: 580
Period size: 81 Copynumber: 5.5 Consensus size: 81
49176291 GGGTATTTTA
* * * * * * *
49176301 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
49176366 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * * *
49176382 GTAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATTG-GGGTAAAACGGTAATTATGTA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
*
49176446 AAT-TAGGGGTAAAATG
66 AATCGA-GGGTAAAATG
**
49176462 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGT
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTGT
49176526 AAATCGAGGGTAAAATG
65 AAATCGAGGGTAAAATG
* * * *
49176543 GTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTA
1 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
* *
49176608 AATCAAGGGTAAAATA
66 AATCGAGGGTAAAATG
* * **
49176624 GTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAC
1 GTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGT
**
49176688 AAATCGAGGGTAAAACA
65 AAATCGAGGGTAAAATG
49176705 GTAATTCTATAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCG
1 GTAATTCTATAAATC-GAGGGTAAAACGGTAATTCTGTAAATCG
49176748 GGAGTACTTT
Statistics
Matches: 323, Mismatches: 37, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
79 1 0.00
80 68 0.21
81 252 0.78
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
AATCGAGGGTAAAATG
Found at i:49178197 original size:43 final size:42
Alignment explanation
Indices: 49178149--49178266 Score: 125
Period size: 41 Copynumber: 2.8 Consensus size: 42
49178139 CATCGACTTA
*
49178149 TGATTTACGTGTAAGACCACATCTAGGACATTGGAATCG-TATT
1 TGATTTAC-TGTAAGACC-CATCTGGGACATTGGAATCGATATT
* *
49178192 TGATTT-CTGTAAGACCCTATCTGGGACAATGGCATCGATATT
1 TGATTTACTGTAAGACCC-ATCTGGGACATTGGAATCGATATT
* *
49178234 TGA-TTACATGTATGACCTCGTCTGGGACATTGG
1 TGATTTAC-TGTAAGACC-CATCTGGGACATTGG
49178267 CATTGTACGA
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
40 1 0.02
41 27 0.42
42 9 0.14
43 26 0.41
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
TGATTTACTGTAAGACCCATCTGGGACATTGGAATCGATATT
Found at i:49178204 original size:41 final size:42
Alignment explanation
Indices: 49178149--49178266 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 42
49178139 CATCGACTTA
* *
49178149 TGATTTACGTGTAAGACCACATCTAGGACATTGGAATCG-TATT
1 TGATTT-CATGTAAGACC-CATCTGGGACATTGGAATCGATATT
* *
49178192 TGATTTC-TGTAAGACCCTATCTGGGACAATGGCATCGATATT
1 TGATTTCATGTAAGACCC-ATCTGGGACATTGGAATCGATATT
* * *
49178234 TGATTACATGTATGACCTCGTCTGGGACATTGG
1 TGATTTCATGTAAGACC-CATCTGGGACATTGG
49178267 CATTGTACGA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
40 1 0.02
41 25 0.39
42 11 0.17
43 26 0.41
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
TGATTTCATGTAAGACCCATCTGGGACATTGGAATCGATATT
Found at i:49179043 original size:10 final size:10
Alignment explanation
Indices: 49179008--49179049 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
49178998 AAACATATTC
49179008 TTTGGTATGA
1 TTTGGTATGA
*
49179018 TATTGGTTTAGA
1 T-TTGGTAT-GA
49179030 TTTGGTATGA
1 TTTGGTATGA
49179040 TTTGGT-TGA
1 TTTGGTATGA
49179049 T
1 T
49179050 GAATTGAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 4 0.14
10 9 0.32
11 12 0.43
12 3 0.11
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (10 bp):
TTTGGTATGA
Found at i:49185297 original size:43 final size:44
Alignment explanation
Indices: 49185142--49185298 Score: 177
Period size: 43 Copynumber: 3.7 Consensus size: 44
49185132 TGTGTTTTCG
*
49185142 TGTAAGACCAC-GTCTGCGACGTTGGCATCGAT-TTATGATTTACA
1 TGTAAGACCACTGTCTGGGACGTTGGCATCGATATT-TGA-TTACA
* * *
49185186 TGTAAGACCA-TGTCTGGGACATCGGCATC-ATATTTGATCT-CG
1 TGTAAGACCACTGTCTGGGACGTTGGCATCGATATTTGAT-TACA
*
49185228 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACTGTCTGGGA-CGTTGGCATCGATATTTGATTACA
49185271 TGTAAGACCACT-TCTGGGACGTTGGCAT
1 TGTAAGACCACTGTCTGGGACGTTGGCAT
49185299 TGTACAAGCT
Statistics
Matches: 95, Mismatches: 9, Indels: 19
0.77 0.07 0.15
Matches are distributed among these distances:
42 28 0.29
43 38 0.40
44 29 0.31
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (44 bp):
TGTAAGACCACTGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:49191315 original size:8 final size:8
Alignment explanation
Indices: 49191302--49191333 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
49191292 CTAGATCGGC
49191302 AAAAGCCG
1 AAAAGCCG
49191310 AAAAGCCG
1 AAAAGCCG
*
49191318 AAAAGCTG
1 AAAAGCCG
49191326 AAAAGCCG
1 AAAAGCCG
49191334 GCATTTGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.50, C:0.22, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:49192072 original size:60 final size:58
Alignment explanation
Indices: 49191979--49192112 Score: 137
Period size: 59 Copynumber: 2.2 Consensus size: 58
49191969 AACTATGTTA
* * *
49191979 ATATGGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTGTGACCCAGATTGATACTG
1 ATATGGGCTAGG-CCAATATATCTCGACTTGTAA-AGGGCTATGACCCAGATTAATACTG
* * *
49192039 ATATGGGCTAGGCCAATATA-CTCTGA-TACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCAATATATCTC-GACT--TGTAAAGGGCTATGACCCAGATTAATACTG
*
49192098 ATATAGGCTAAGGCC
1 ATATGGGCT-AGGCC
49192113 CAGTTAAAAC
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
58 4 0.06
59 38 0.60
60 21 0.33
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (58 bp):
ATATGGGCTAGGCCAATATATCTCGACTTGTAAAGGGCTATGACCCAGATTAATACTG
Found at i:49193506 original size:39 final size:39
Alignment explanation
Indices: 49193462--49193541 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
49193452 CAAGTATTTA
49193462 TAGGCCTAAAGTCTAGGTAGTCGAATGGCCTTTCATACT
1 TAGGCCTAAAGTCTAGGTAGTCGAATGGCCTTTCATACT
49193501 TAGGCCTAAAGTCTAGGTAGTCGAATGGCCTTTCATACT
1 TAGGCCTAAAGTCTAGGTAGTCGAATGGCCTTTCATACT
49193540 TA
1 TA
49193542 CACATTAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (39 bp):
TAGGCCTAAAGTCTAGGTAGTCGAATGGCCTTTCATACT
Found at i:49194445 original size:30 final size:30
Alignment explanation
Indices: 49194360--49194447 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
49194350 TAAACTAAAA
* * *
49194360 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
* * * * *
49194390 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
*
49194420 TGAGCTAAGGTTTAGCTCGTGAGCTGAA
1 TGAGCTAAGATTTAGCTCGTGAGCTGAA
49194448 TATGAGATAG
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTGAAGT
Found at i:49196208 original size:21 final size:22
Alignment explanation
Indices: 49196184--49196234 Score: 79
Period size: 21 Copynumber: 2.4 Consensus size: 22
49196174 GTTTTATACT
49196184 TTAATTAATATTGATTTAAT-A
1 TTAATTAATATTGATTTAATGA
*
49196205 TTAATTAATCTTGATTTAATGA
1 TTAATTAATATTGATTTAATGA
49196227 -TAATTAAT
1 TTAATTAAT
49196235 TCTTTAATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 27 0.96
22 1 0.04
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.51
Consensus pattern (22 bp):
TTAATTAATATTGATTTAATGA
Found at i:49203322 original size:17 final size:19
Alignment explanation
Indices: 49203290--49203324 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
49203280 ACGTTTGGGC
49203290 ACTAAATTTAGTAAAAAGG
1 ACTAAATTTAGTAAAAAGG
49203309 ACTAAA-TT-GTAAAAAG
1 ACTAAATTTAGTAAAAAG
49203325 TGCAAAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.54, C:0.06, G:0.14, T:0.26
Consensus pattern (19 bp):
ACTAAATTTAGTAAAAAGG
Found at i:49204390 original size:42 final size:42
Alignment explanation
Indices: 49204331--49204451 Score: 131
Period size: 42 Copynumber: 2.8 Consensus size: 42
49204321 TAGGATTAGT
*
49204331 TGAGATTAT-GTGTAAGACCATATCTGGGATATGGCAAT-GATA
1 TGAGATT-TCGTGTAAGACCATATCT-GGATATGGCAATCAATA
*
49204373 TGAGATTTCGTGTAAGACCATAGCTGGACTATTGGC-ATCAATA
1 TGAGATTTCGTGTAAGACCATATCTGGA-TA-TGGCAATCAATA
** *
49204416 TGAGATCCCATGTAAGACCATATCTAGGATATGGCA
1 TGAGATTTCGTGTAAGACCATATCT-GGATATGGCA
49204452 TTGGTACGGT
Statistics
Matches: 67, Mismatches: 6, Indels: 11
0.80 0.07 0.13
Matches are distributed among these distances:
41 4 0.06
42 30 0.45
43 30 0.45
44 3 0.04
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGACCATATCTGGATATGGCAATCAATA
Found at i:49209124 original size:47 final size:47
Alignment explanation
Indices: 49209071--49209194 Score: 230
Period size: 47 Copynumber: 2.6 Consensus size: 47
49209061 ATATTTGAGT
*
49209071 TCCGAACTCGTTGAGTTGAGTCCGATTTCATGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCA
*
49209118 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCA
49209165 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA
49209195 CTTATGGATG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCA
Found at i:49214373 original size:80 final size:80
Alignment explanation
Indices: 49214281--49214444 Score: 310
Period size: 80 Copynumber: 2.0 Consensus size: 80
49214271 GATGTTTTAT
* *
49214281 GGTATAATATGAAACTTTAAATTGTGTTAAACAACTTTTGCTAAACGATTTTACGTGAAAATGAG
1 GGTATAATATGAAACTTTAAATTGTGTTAAACAACTTTTGCTAAACAATTTTACGTGAAAACGAG
49214346 TAAAATGACATAATC
66 TAAAATGACATAATC
49214361 GGTATAATATGAAACTTTAAATTGTGTTAAACAACTTTTGCTAAACAATTTTACGTGAAAACGAG
1 GGTATAATATGAAACTTTAAATTGTGTTAAACAACTTTTGCTAAACAATTTTACGTGAAAACGAG
49214426 TAAAATGACATAATC
66 TAAAATGACATAATC
49214441 GGTA
1 GGTA
49214445 AAAATACCTA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 82 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.33
Consensus pattern (80 bp):
GGTATAATATGAAACTTTAAATTGTGTTAAACAACTTTTGCTAAACAATTTTACGTGAAAACGAG
TAAAATGACATAATC
Found at i:49217275 original size:48 final size:47
Alignment explanation
Indices: 49217199--49217332 Score: 187
Period size: 48 Copynumber: 2.8 Consensus size: 47
49217189 GACACACAAC
* * *
49217199 AAGCTGACGCCATGTCCCAAACAGATCTTACACTAGCTTGTACATCTCG
1 AAGCTGATG-CATGT-CCAGACATATCTTACACTAGCTTGTACATCTCG
*
49217248 AAGCTGATGCATGTCCTAGACATATCTTACACTAGCTTGTATATCTCG
1 AAGCTGATGCATGTCC-AGACATATCTTACACTAGCTTGTACATCTCG
*
49217296 AAGCTGATGCATGTCCAGGACATGTCTTACACTAGCT
1 AAGCTGATGCATGTCCA-GACATATCTTACACTAGCT
49217333 CTCATAATGT
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
47 3 0.04
48 67 0.86
49 8 0.10
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (47 bp):
AAGCTGATGCATGTCCAGACATATCTTACACTAGCTTGTACATCTCG
Found at i:49222839 original size:40 final size:40
Alignment explanation
Indices: 49222795--49222942 Score: 167
Period size: 40 Copynumber: 3.7 Consensus size: 40
49222785 TAATAGCTCG
*
49222795 CACAAATGCCTTCGGGA-CTTAACCCGGATTTGGGAACTCA
1 CACAAATGCCTTC-GGATCTTAGCCCGGATTTGGGAACTCA
* * *
49222835 CACAAATGCCTTCGGATCTTAGTCCGAATTTGGGAACTCG
1 CACAAATGCCTTCGGATCTTAGCCCGGATTTGGGAACTCA
* * ** *
49222875 CACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTA
1 CACAAATGCCTTCGGATCTTAGCCCGGATTTGGGAACTCA
49222915 GCACAAA-GCCTTCAGGA-CTTAGCCCGGA
1 -CACAAATGCCTTC-GGATCTTAGCCCGGA
49222943 CATCATTCGA
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.03
40 82 0.87
41 9 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CACAAATGCCTTCGGATCTTAGCCCGGATTTGGGAACTCA
Found at i:49224858 original size:47 final size:47
Alignment explanation
Indices: 49224804--49225091 Score: 423
Period size: 47 Copynumber: 6.1 Consensus size: 47
49224794 TTAGGATTTT
** * *
49224804 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
49224851 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
49224898 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
49224945 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
49224992 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *** * * *
49225039 ATGTGGTGAAAAAGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
49225086 ATGTGA
1 ATGTGA
49225092 AATATGTATG
Statistics
Matches: 217, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 217 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:49224904 original size:22 final size:22
Alignment explanation
Indices: 49224833--49224904 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
49224823 GTATATATGA
49224833 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
49224855 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
49224880 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
49224902 GAT
1 GAT
49224905 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:49225220 original size:98 final size:96
Alignment explanation
Indices: 49225062--49225245 Score: 316
Period size: 98 Copynumber: 1.9 Consensus size: 96
49225052 GAACATGCAT
*
49225062 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
49225127 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
49225158 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
49225222 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
49225246 GGTGATGTGC
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
95 1 0.01
96 27 0.33
97 2 0.02
98 53 0.64
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:49225221 original size:50 final size:48
Alignment explanation
Indices: 49225061--49225245 Score: 309
Period size: 48 Copynumber: 3.8 Consensus size: 48
49225051 AGAACATGCA
49225061 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
49225109 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
49225157 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
49225207 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
49225246 GGTGATGTGC
Statistics
Matches: 128, Mismatches: 5, Indels: 8
0.91 0.04 0.06
Matches are distributed among these distances:
47 1 0.01
48 81 0.63
49 4 0.03
50 41 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:49225260 original size:50 final size:50
Alignment explanation
Indices: 49225056--49225266 Score: 283
Period size: 48 Copynumber: 4.3 Consensus size: 50
49225046 GAAAAAGAAC
*
49225056 ATGCATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
49225106 AT--GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
49225154 ATGC--ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGAT
* * *
49225204 AT--GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGTGAT
1 ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
*
49225252 GTGCGTATATTGTGG
1 ATGCGTATA-TGTGG
49225267 CCGAACGACC
Statistics
Matches: 143, Mismatches: 7, Indels: 21
0.84 0.04 0.12
Matches are distributed among these distances:
47 1 0.01
48 85 0.59
49 4 0.03
50 47 0.33
51 6 0.04
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (50 bp):
ATGCGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
Found at i:49225441 original size:37 final size:37
Alignment explanation
Indices: 49225391--49225498 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
49225381 GGAAATATAT
49225391 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
49225428 TCCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
49225465 TCTGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
49225499 TCGTCTGAGA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:49226942 original size:20 final size:20
Alignment explanation
Indices: 49226919--49226971 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
49226909 TACACGGGCA
49226919 TGTCCCAAGCCACACAAGCG
1 TGTCCCAAGCCACACAAGCG
* **
49226939 TGTCTCAAGCCACACGGGCG
1 TGTCCCAAGCCACACAAGCG
49226959 TGTCCCAAGCCAC
1 TGTCCCAAGCCAC
49226972 GCAAATGTGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.25, C:0.40, G:0.23, T:0.13
Consensus pattern (20 bp):
TGTCCCAAGCCACACAAGCG
Found at i:49229099 original size:40 final size:40
Alignment explanation
Indices: 49229030--49229105 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
49229020 TCTATGTTCG
* *
49229030 GCACTAAGTGTGTGATTTGAAATAACTTCGACTATAAATA
1 GCACTAAGTGTGCGAATTGAAATAACTTCGACTATAAATA
* * *
49229070 GCACTAAGTGTGCGAATTGGAATAGCTTCGGCTATA
1 GCACTAAGTGTGCGAATTGAAATAACTTCGACTATA
49229106 CGAGGCACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.30
Consensus pattern (40 bp):
GCACTAAGTGTGCGAATTGAAATAACTTCGACTATAAATA
Found at i:49229114 original size:40 final size:40
Alignment explanation
Indices: 49229029--49229124 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 40
49229019 TTCTATGTTC
* *
49229029 GGCACTAAGTGTGTGATTTGAAATAACTTCGACTATAAAT
1 GGCACTAAGTGTGCGAATTGAAATAACTTCGACTATAAAT
* * * * *
49229069 AGCACTAAGTGTGCGAATTGGAATAGCTTCGGCTATACGA-
1 GGCACTAAGTGTGCGAATTGAAATAACTTCGACTATA-AAT
*
49229109 GGCACTAAATGTGCGA
1 GGCACTAAGTGTGCGA
49229125 TACCGAGATA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
40 45 0.98
41 1 0.02
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAATTGAAATAACTTCGACTATAAAT
Found at i:49237770 original size:68 final size:66
Alignment explanation
Indices: 49237656--49237853 Score: 177
Period size: 68 Copynumber: 2.9 Consensus size: 66
49237646 TAGAGCGAGC
* * * * *
49237656 GTAGCTAGGTCACATGTATGATGCC-GAGTGCACATCATGT-GTACAAGAAAGCTACGAGATACT
1 GTAGCTAGGTCACATGTGTGATACCGGA-TGCACACCATGTAG-ACAAGAGAGCTACGAGAGA-T
**
49237719 ATGT
63 AAAT
*
49237723 AGTAGCTAGGTCACATGTGTGATACCGGATGTATC-CCATGTAGACAAGAGAGCTACGTGAGAGA
1 -GTAGCTAGGTCACATGTGTGATACCGGATGCA-CACCATGTAGACAAGAGAGCTAC--GAGAGA
49237787 TAAAT
62 TAAAT
* * * *
49237792 GTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGTGTGATACC--G-GATGCACACCATGTAGACAAGAGAGCTACGAGA
49237854 CAAATCGTCT
Statistics
Matches: 109, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
68 66 0.61
69 11 0.10
70 7 0.06
71 25 0.23
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (66 bp):
GTAGCTAGGTCACATGTGTGATACCGGATGCACACCATGTAGACAAGAGAGCTACGAGAGATAAA
T
Found at i:49246752 original size:51 final size:50
Alignment explanation
Indices: 49246593--49246749 Score: 251
Period size: 51 Copynumber: 3.1 Consensus size: 50
49246583 ACTTCTGATC
* *
49246593 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAGTGACA
* *
49246644 AGTGACAAATGATAAGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
*
49246694 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACA
49246745 AGTGA
1 AGTGA
49246750 TAAATGTGAT
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
50 46 0.47
51 52 0.53
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (50 bp):
AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
Found at i:49254552 original size:51 final size:50
Alignment explanation
Indices: 49254393--49254549 Score: 251
Period size: 51 Copynumber: 3.1 Consensus size: 50
49254383 ACTTCTGATC
* *
49254393 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGATA
1 AGTGACAAGTGATAAGTGGTAG-CTTAGCTACACTTATCTGATCAGTGACA
* *
49254444 AGTGACAAATGATAAGTGGTAGCTTAGCTACTCTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
*
49254494 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACA
49254545 AGTGA
1 AGTGA
49254550 TAAATGTGAT
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
50 46 0.47
51 52 0.53
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (50 bp):
AGTGACAAGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACA
Found at i:49260024 original size:7 final size:7
Alignment explanation
Indices: 49260012--49260036 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
49260002 GTTGTCTTCT
49260012 TGTTTGA
1 TGTTTGA
49260019 TGTTTGA
1 TGTTTGA
49260026 TGTTTGA
1 TGTTTGA
49260033 TGTT
1 TGTT
49260037 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:49260315 original size:2 final size:2
Alignment explanation
Indices: 49260308--49260340 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
49260298 AAGATGATAG
49260308 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
49260341 GTATGCATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:49260970 original size:27 final size:28
Alignment explanation
Indices: 49260914--49260983 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
49260904 AAATTTGTAC
49260914 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
49260942 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
49260969 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
49260984 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:49267891 original size:7 final size:7
Alignment explanation
Indices: 49267879--49267903 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
49267869 GTTGTCTTCT
49267879 TGTTTGA
1 TGTTTGA
49267886 TGTTTGA
1 TGTTTGA
49267893 TGTTTGA
1 TGTTTGA
49267900 TGTT
1 TGTT
49267904 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:49268182 original size:2 final size:2
Alignment explanation
Indices: 49268175--49268203 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
49268165 AAGATGATAG
49268175 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
49268204 GTATGCATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:49268833 original size:27 final size:28
Alignment explanation
Indices: 49268777--49268846 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
49268767 AAATTTGTAC
49268777 AGCACTAAGTGTGCGAGTTTGATTACAT
1 AGCACTAAGTGTGCGAGTTTGATTACAT
* **
49268805 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTACAT
49268832 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
49268847 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTACAT
Found at i:49276271 original size:50 final size:48
Alignment explanation
Indices: 49276217--49276336 Score: 150
Period size: 50 Copynumber: 2.4 Consensus size: 48
49276207 GAGGAAGTGC
* *
49276217 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAG-TTAT-A
* * *
49276267 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTATA
*
49276315 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
49276337 ATATGATAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
48 5 0.08
49 11 0.18
50 45 0.74
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (48 bp):
AAAAGGGCTATGCCCCAGTTTACCAAAAAGGGCTTTGCCCCAGTTATA
Found at i:49276324 original size:24 final size:25
Alignment explanation
Indices: 49276217--49276311 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
49276207 GAGGAAGTGC
* * *
49276217 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
49276242 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
49276267 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
49276292 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
49276312 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:49276576 original size:31 final size:31
Alignment explanation
Indices: 49276533--49276647 Score: 160
Period size: 31 Copynumber: 3.7 Consensus size: 31
49276523 CGTTTGTAGT
*
49276533 AAAGGCTTCGGCCCAGTTATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
49276564 AAAGACTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * * *
49276595 AAAGGCTTCGGCCTAGTGACATGGATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
49276626 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
49276648 CTGAGATTGA
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
30 4 0.05
31 72 0.95
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:49284368 original size:36 final size:34
Alignment explanation
Indices: 49284273--49284375 Score: 91
Period size: 36 Copynumber: 2.9 Consensus size: 34
49284263 ATATATTGGG
* *
49284273 TTTTTTCTGAAGATTTTGGGTTCTTTATTGTTTATTA
1 TTTTTTTTGAAGATGTTGGGTTC---ATTGTTTATTA
* * *
49284310 TTTTTTTTGAATG-TGCTAGGTTCATTGTTTGTTA
1 TTTTTTTTGAA-GATGTTGGGTTCATTGTTTATTA
*
49284344 GTTGTTTTTTGAAGATGTTGGGTTCTTTGTTT
1 -TT-TTTTTTGAAGATGTTGGGTTCATTGTTT
49284376 TGAACATTCT
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
34 10 0.19
35 3 0.06
36 23 0.43
37 17 0.31
38 1 0.02
ACGTcount: A:0.14, C:0.05, G:0.21, T:0.60
Consensus pattern (34 bp):
TTTTTTTTGAAGATGTTGGGTTCATTGTTTATTA
Found at i:49288321 original size:24 final size:24
Alignment explanation
Indices: 49288279--49288325 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
49288269 CTGTCAGGAG
***
49288279 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAAATAAGGGAT
49288303 AGGATTTAGGAGCAAATAAGGGA
1 AGGATTTAGGAGCAAATAAGGGA
49288326 GGAAATCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.36, T:0.23
Consensus pattern (24 bp):
AGGATTTAGGAGCAAATAAGGGAT
Found at i:49289832 original size:28 final size:26
Alignment explanation
Indices: 49289740--49289851 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
49289730 AGGAAGCGTC
* *
49289740 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
49289767 CTGGTGGCTGTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
49289794 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
49289822 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
49289848 CTGG
1 CTGG
49289852 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.15, C:0.23, G:0.24, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:49289846 original size:54 final size:54
Alignment explanation
Indices: 49289740--49289851 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
49289730 AGGAAGCGTC
* * *
49289740 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTGTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
49289794 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
49289848 CTGG
1 CTGG
49289852 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.15, C:0.23, G:0.24, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:49290931 original size:11 final size:10
Alignment explanation
Indices: 49290903--49290936 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
49290893 AGCCTGTAAG
49290903 TATTCTGAAT
1 TATTCTGAAT
*
49290913 TTTTCTGAAT
1 TATTCTGAAT
49290923 ATATTCTGAAT
1 -TATTCTGAAT
49290934 TAT
1 TAT
49290937 CTTCTGTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:49296136 original size:24 final size:24
Alignment explanation
Indices: 49296104--49296150 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
49296094 CTGTCAGGAG
**
49296104 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAGATAAGGGAT
49296128 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGCAGATAAGGGA
49296151 GGAAATCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.02, G:0.38, T:0.23
Consensus pattern (24 bp):
AGGATTTAGGAGCAGATAAGGGAT
Found at i:49297657 original size:28 final size:26
Alignment explanation
Indices: 49297564--49297676 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
49297554 GGAGGAAGCG
* *
49297564 TCTGGTGGCTATGCCACAATTATCTGA
1 TCTGGTGGCTCTGCCAC-ATTATCTGT
* * *
49297591 TCTGGTGGCTCTACTACATATTTCTGT
1 TCTGGTGGCTCTGCCACAT-TATCTGT
49297618 TCTGGTGGCTCTGCCACGATTATCTGT
1 TCTGGTGGCTCTGCCAC-ATTATCTGT
* *
49297645 ATCTGGTGACTCTGTCACATTATCTGT
1 -TCTGGTGGCTCTGCCACATTATCTGT
49297672 TCTGG
1 TCTGG
49297677 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.67
28 17 0.23
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (26 bp):
TCTGGTGGCTCTGCCACATTATCTGT
Found at i:49297671 original size:54 final size:54
Alignment explanation
Indices: 49297564--49297676 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
49297554 GGAGGAAGCG
* *
49297564 TCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACTACATATTTCTGT
1 TCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACTACATATATCTGT
* * *
49297618 TCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCT-GTCACAT-TATCTGT
1 TCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACT-ACATATATCTGT
49297672 TCTGG
1 TCTGG
49297677 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 36 0.69
55 16 0.31
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (54 bp):
TCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACTACATATATCTGT
Found at i:49302514 original size:46 final size:45
Alignment explanation
Indices: 49302455--49302630 Score: 142
Period size: 46 Copynumber: 3.8 Consensus size: 45
49302445 TATTTGGGCA
*
49302455 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
49302501 TCAGAACTAGTTGAGTAGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTAGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
49302548 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
49302594 CCCGAGCTCA-TTGAGTTGAGTCAGAGTTCACTTATGG
1 TCCGAACT-AGTTGAGTTGAGTCCGAGTTCACTTATGG
49302631 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 21, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 63 0.62
47 28 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTAGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:49302615 original size:93 final size:93
Alignment explanation
Indices: 49302451--49302622 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
49302441 AGGATATTTG
* *
49302451 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCAGAACTAGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCAGAACTAGTTGAG
*
49302516 TAGAGTCCGAGTTCGAGAGATGTAACTA
66 TAGAGTCAGAGTTCGAGAGATGTAACTA
* * * *
49302544 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCA-TTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCAGAACT-AGTTGA
*
49302608 GTTGAGTCAGAGTTC
65 GTAGAGTCAGAGTTC
49302623 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
93 69 0.99
94 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCAGAACTAGTTGAG
TAGAGTCAGAGTTCGAGAGATGTAACTA
Found at i:49304385 original size:43 final size:42
Alignment explanation
Indices: 49304338--49304493 Score: 125
Period size: 42 Copynumber: 3.6 Consensus size: 42
49304328 TCTCAGACGT
* *
49304338 GGTCTTACATGTAATTCAGTATCGATGCCTTTGTCCCAGACAG
1 GGTCTTACATGTAATTCAG-ATCGATGCCTATGTCCCAGACAC
** * * * *
49304381 GGTCTTACA-CAAAATCAGATACGATGCCGATGTCCCAAACAT
1 GGTCTTACATGTAATTCAGAT-CGATGCCTATGTCCCAGACAC
* * * *
49304423 GGTCTTACACGTAAATCTCAAATCGAGGCCTGTGTCCCAGACAC
1 GGTCTTACATGT-AAT-TCAGATCGATGCCTATGTCCCAGACAC
* * *
49304467 AGCCTTACATGATAACTCAGATCGATG
1 GGTCTTACATG-TAATTCAGATCGATG
49304494 TTCACAGTCC
Statistics
Matches: 86, Mismatches: 22, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
41 2 0.02
42 32 0.37
43 18 0.21
44 28 0.33
45 6 0.07
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGTAATTCAGATCGATGCCTATGTCCCAGACAC
Found at i:49304474 original size:86 final size:85
Alignment explanation
Indices: 49304319--49304475 Score: 190
Period size: 86 Copynumber: 1.8 Consensus size: 85
49304309 AACGGGTACA
* * * * * * * ** *
49304319 ATGCCGACGTCTCAGACGTGGTCTTACATGTAATTCAGTATCGATGCCTTTGTCCCAGACAGGGT
1 ATGCCGACGTCCCAAACATGGTCTTACACGTAATTCAGAATCGAGGCCTGTGTCCCAGACACAGC
49304384 CTTACACAAAATCAGATACG
66 CTTACACAAAATCAGATACG
*
49304404 ATGCCGATGTCCCAAACATGGTCTTACACGTAAATCTCA-AATCGAGGCCTGTGTCCCAGACACA
1 ATGCCGACGTCCCAAACATGGTCTTACACGT-AAT-TCAGAATCGAGGCCTGTGTCCCAGACACA
49304468 GCCTTACA
64 GCCTTACA
49304476 TGATAACTCA
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
85 26 0.44
86 30 0.51
87 3 0.05
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (85 bp):
ATGCCGACGTCCCAAACATGGTCTTACACGTAATTCAGAATCGAGGCCTGTGTCCCAGACACAGC
CTTACACAAAATCAGATACG
Found at i:49316225 original size:53 final size:53
Alignment explanation
Indices: 49316162--49316268 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
49316152 CCTCATACGA
49316162 AGTTAGATCGGGACAAAGGAAAATTATTGGATTAGTCGCCTTCGTATCTATGT
1 AGTTAGATCGGGACAAAGGAAAATTATTGGATTAGTCGCCTTCGTATCTATGT
49316215 AGTTAGATCGGGACAAAGGAAAATTATTGGATTAGTCGCCTTCGTATCTATGT
1 AGTTAGATCGGGACAAAGGAAAATTATTGGATTAGTCGCCTTCGTATCTATGT
49316268 A
1 A
49316269 CATTCGTCGA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (53 bp):
AGTTAGATCGGGACAAAGGAAAATTATTGGATTAGTCGCCTTCGTATCTATGT
Found at i:49318771 original size:47 final size:47
Alignment explanation
Indices: 49318696--49318806 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 47
49318686 CCCCTCGGGA
* * *
49318696 CTTATCACATT-TATACACTTTCATATTCATCGCATTGGCCATTCGGC
1 CTTATCAC-TTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
49318743 CTTATCACTTATATACACTTTGACATTCATCACATCGGCCATTCGGC
1 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
*
49318790 CTTATCACATATATACA
1 CTTATCACTTATATACA
49318807 TCTCATACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 2 0.03
47 56 0.97
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (47 bp):
CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:49318868 original size:46 final size:46
Alignment explanation
Indices: 49318810--49318945 Score: 254
Period size: 46 Copynumber: 3.0 Consensus size: 46
49318800 ATATACATCT
* *
49318810 CATACATGTTTCATACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
49318856 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
49318902 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
1 CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATAT
49318946 ATATTTAACT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 88 1.00
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34
Consensus pattern (46 bp):
CATACATATTTCACACTAGCCATTTGGCTTTACCACACATATATCA
Found at i:49321670 original size:39 final size:39
Alignment explanation
Indices: 49321608--49321743 Score: 105
Period size: 39 Copynumber: 3.5 Consensus size: 39
49321598 GAATCACGTA
* * * * * *
49321608 CCTTCGGGATTTAACCGGATATAGCGACTCGCTCGATTG
1 CCTTCGGGAATTAGCCCGTTATAGCGACTCGCACAATTG
* * *
49321647 TCTTCGGGACA-TAGCCCGTTATAGTGATTCGCACAATTG
1 CCTTCGGGA-ATTAGCCCGTTATAGCGACTCGCACAATTG
** **
49321686 CCTTCGGGAATTAGCCCGGATT-TAGTAACTCGCACAAAAG
1 CCTTCGGGAATTAGCCC-G-TTATAGCGACTCGCACAATTG
*
49321726 CCTTCGGGACTTAGCCCG
1 CCTTCGGGAATTAGCCCG
49321744 GATACCATTC
Statistics
Matches: 78, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 1 0.01
39 44 0.56
40 31 0.40
41 2 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
CCTTCGGGAATTAGCCCGTTATAGCGACTCGCACAATTG
Found at i:49322455 original size:40 final size:40
Alignment explanation
Indices: 49322406--49322706 Score: 460
Period size: 40 Copynumber: 7.5 Consensus size: 40
49322396 CCAGCATGAT
* *
49322406 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
49322446 TGCTCTTCGGAACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
49322486 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
49322526 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
49322565 TGCTCTTTGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
49322605 TGCTCTTCGGAACTTAGCCCGGATACGTCACTAGCATGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* *
49322645 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
49322685 TGCTCTTCGGGACTTAGCCCGG
1 TGCTCTTCGGAACTTAGCCCGG
49322707 TCATCGTCGA
Statistics
Matches: 240, Mismatches: 20, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
39 38 0.16
40 202 0.84
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:49322640 original size:159 final size:159
Alignment explanation
Indices: 49322406--49322706 Score: 476
Period size: 159 Copynumber: 1.9 Consensus size: 159
49322396 CCAGCATGAT
* * *
49322406 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCTGGATA
1 TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
* * *
49322471 CATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCATGAATGCTCTTCGG
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
49322536 AACTTAGCCCGGATATATCACTAGCACAA
131 AACTTAGCCCGGATATATCACTAGCACAA
* * *
49322565 TGCTCTTTGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
* * * *
49322630 CGTCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG
66 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
*
49322695 GACTTAGCCCGG
131 AACTTAGCCCGG
49322707 TCATCGTCGA
Statistics
Matches: 128, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
159 128 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (159 bp):
TGCTCTTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
AACTTAGCCCGGATATATCACTAGCACAA
Done.