Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 167 of 425
Found at i:50617751 original size:40 final size:40
Alignment explanation
Indices: 50617658--50617794 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 40
50617648 AAGCCAAGTA
* * *
50617658 CCTTCGGGATTTA-ACCGGATATAG-ATACTCGC-TCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-ACTCGCACCAATG
*
50617696 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
*
50617736 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
50617776 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
50617795 TTATCATCCA
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
38 11 0.12
39 16 0.18
40 63 0.70
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
Found at i:50626755 original size:40 final size:40
Alignment explanation
Indices: 50626700--50626909 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
50626690 AACATTGGAA
50626700 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
50626740 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
50626780 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
50626820 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
50626859 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
50626900 CTATATCCGG
1 ATATATCCGG
50626910 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:50634873 original size:40 final size:40
Alignment explanation
Indices: 50634818--50635027 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
50634808 AACATTGGAA
50634818 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
50634858 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
50634898 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
50634938 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
50634977 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
50635018 CTATATCCGG
1 ATATATCCGG
50635028 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:50641945 original size:49 final size:49
Alignment explanation
Indices: 50641840--50642166 Score: 203
Period size: 48 Copynumber: 6.9 Consensus size: 49
50641830 GGGTTAAGAT
* * *
50641840 GCCGACGCCATGTCCTAGACATGGTCTTACACTGGCTTTCATATAGCGAG
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAGCGAG
* * *
50641890 GCCGATGCCATGTCCCAGACAAGTCTTACACTGGCTCTCATTTATCG-G
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGAG
* * * * * *
50641938 TGTCGATGCCATGTCCCAGATAGGTCTTACACT-G-ACACACA-A-C-AA
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGAG
* ** * * * *
50641983 GCTGACACCATGTCCCAGATAGGTCTTACACTAGCT-TGTATATCGCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCT-CATATAGCGAG
* * * * * * * *
50642032 GCTGATG-CATGTCCCAGACATGTCCTACACTAGCTCTCGTCT--CAAT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGAG
* * * ** *
50642078 GCCGATG-CATGTCCCAAACATGTCTTACACTGGCT-TAAATATCTCAAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCT-CATATAGCGAG
* * *
50642126 GTCGATG-CATGTCCCAGACATGTTTTACACTGGCTCTCATA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATA
50642167 CTGTGGCTGA
Statistics
Matches: 218, Mismatches: 46, Indels: 28
0.75 0.16 0.10
Matches are distributed among these distances:
44 28 0.13
45 3 0.01
46 38 0.17
47 3 0.01
48 68 0.31
49 59 0.27
50 19 0.09
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGAG
Found at i:50642061 original size:48 final size:48
Alignment explanation
Indices: 50641991--50642205 Score: 172
Period size: 48 Copynumber: 4.6 Consensus size: 48
50641981 AAGCTGACAC
* * * * *
50641991 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCGCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATATATCTCAAGGCTGATG
* * ** * *
50642039 CATGTCCCAGACATGTCCTACACTAGC-TCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATATATCTCAAGGCTGATG
* * *
50642085 CATGTCCCAAACATGTCTTACACTGGCTTAAATATCTCAAGG-TCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATATATCTCAAGGCT-GATG
* * * **
50642133 CATGTCCCAGACATGTTTTACACTGGCTCT-CATA-CT-GTGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TATATATCTCAAGGCTGATG
* * *
50642179 CATGTCCTAAACATGTCTTACGCTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
50642206 ACACATATCA
Statistics
Matches: 133, Mismatches: 29, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
46 62 0.47
47 6 0.05
48 64 0.48
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTATATATCTCAAGGCTGATG
Found at i:50642106 original size:94 final size:94
Alignment explanation
Indices: 50641991--50642205 Score: 238
Period size: 94 Copynumber: 2.3 Consensus size: 94
50641981 AAGCTGACAC
* * * ** *
50641991 CATGTCCCAGATAGGTCTTACACTAGCTTGTATATCGCGAGG-CTGATGCATGTCCCAGACATGT
1 CATGTCCCAAACATGTCTTACACTAGCTTAAATATCGCAAGGTC-GATGCATGTCCCAGACATGT
*
50642055 CCTACACTAGCTCTCGT-CTCAAT-GCCGATG
65 CCTACACTAGCTCTCATACT--ATGGCCGATG
* * *
50642085 CATGTCCCAAACATGTCTTACACTGGCTTAAATATCTCAAGGTCGATGCATGTCCCAGACATGTT
1 CATGTCCCAAACATGTCTTACACTAGCTTAAATATCGCAAGGTCGATGCATGTCCCAGACATGTC
* * * *
50642150 TTACACTGGCTCTCATACTGTGGCTGATG
66 CTACACTAGCTCTCATACTATGGCCGATG
* *
50642179 CATGTCCTAAACATGTCTTACGCTAGC
1 CATGTCCCAAACATGTCTTACACTAGC
50642206 ACACATATCA
Statistics
Matches: 101, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
93 1 0.01
94 97 0.96
95 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (94 bp):
CATGTCCCAAACATGTCTTACACTAGCTTAAATATCGCAAGGTCGATGCATGTCCCAGACATGTC
CTACACTAGCTCTCATACTATGGCCGATG
Found at i:50646305 original size:29 final size:29
Alignment explanation
Indices: 50646170--50646304 Score: 216
Period size: 29 Copynumber: 4.7 Consensus size: 29
50646160 GCTTGGAAGG
50646170 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
50646199 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
50646228 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
50646257 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
50646286 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
50646305 GATCGTTTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:50654320 original size:29 final size:29
Alignment explanation
Indices: 50654185--50654319 Score: 216
Period size: 29 Copynumber: 4.7 Consensus size: 29
50654175 GCTTGGAAGG
50654185 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
50654214 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
50654243 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* * **
50654272 TATGGCACTATGTGTGCGAGCTTAAATCG
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
50654301 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
50654320 GATCGTTTAT
Statistics
Matches: 98, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 98 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:50659874 original size:25 final size:25
Alignment explanation
Indices: 50659809--50659863 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
50659799 GCCATTAGGG
* **
50659809 TTACTGAT-TTCAGCTCGTATGAGC
1 TTACTGATACTCAGCTCACATGAGC
50659833 TTACTGATACTCAGCTCACATGAGC
1 TTACTGATACTCAGCTCACATGAGC
50659858 TTACTG
1 TTACTG
50659864 TTATTTAGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (25 bp):
TTACTGATACTCAGCTCACATGAGC
Found at i:50660604 original size:29 final size:29
Alignment explanation
Indices: 50660569--50660627 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
50660559 GGTTGAATGA
50660569 TGAAAGGTAAATTGGTAGTTGAATATGCT
1 TGAAAGGTAAATTGGTAGTTGAATATGCT
50660598 TGAAAGGTAAATTGGTAGTTGAATATGCT
1 TGAAAGGTAAATTGGTAGTTGAATATGCT
50660627 T
1 T
50660628 CTGATATATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (29 bp):
TGAAAGGTAAATTGGTAGTTGAATATGCT
Found at i:50664378 original size:17 final size:17
Alignment explanation
Indices: 50664356--50664407 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
50664346 TTTTAATAAG
*
50664356 ATTTAATATTAAATTTA
1 ATTTAATATTAAATTCA
50664373 ATTTAATATTAAGATAATCA
1 ATTTAATATTAA-AT--TCA
*
50664393 CTTTAATATTAAATT
1 ATTTAATATTAAATT
50664408 AGTAAAATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 2 0.07
20 13 0.43
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (17 bp):
ATTTAATATTAAATTCA
Found at i:50664398 original size:37 final size:35
Alignment explanation
Indices: 50664351--50664469 Score: 107
Period size: 37 Copynumber: 3.2 Consensus size: 35
50664341 TATTCTTTTA
*
50664351 ATAAGATTTAATATTAAATTTAATTTAATATTAAG
1 ATAATATTTAATATTAAATTTAATTTAATATTAAG
** *
50664386 ATAATCACTTTAATATTAAATTAGTAAAATACTATTAAG
1 ATAAT-A-TTTAATATTAAATT--TAATTTAATATTAAG
*
50664425 ATAAGTA-TTAA-ATTAAATTTAATATTAAACTATTAAA
1 ATAA-TATTTAATATTAAATTTAAT-TT-AA-TATTAAG
50664462 ATAATATT
1 ATAATATT
50664470 ATTTTTTGGA
Statistics
Matches: 67, Mismatches: 8, Indels: 16
0.74 0.09 0.18
Matches are distributed among these distances:
34 3 0.04
35 5 0.07
36 12 0.18
37 29 0.43
39 17 0.25
40 1 0.01
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.42
Consensus pattern (35 bp):
ATAATATTTAATATTAAATTTAATTTAATATTAAG
Found at i:50669600 original size:43 final size:43
Alignment explanation
Indices: 50669550--50669700 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 43
50669540 TATCCTAGAT
* * * *
50669550 ATGGTCTTACATGTTATCACATATCGATGCCATTGTGCTAGAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
*** * *
50669593 A-GAGTCTTACACAAAATCATATAACGATGCCAATGTCCCAGAC
1 ATG-GTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
* *
50669636 ATGGTCTTACATGTGATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACATAT-CGATGCCAATGTCCCAGAC
* *
50669679 ATGGTCTTACATATAATTACAT
1 ATGGTCTTACATGTAATCACAT
50669701 CTCGGTAATC
Statistics
Matches: 85, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 2 0.02
43 82 0.96
44 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:50674119 original size:30 final size:30
Alignment explanation
Indices: 50674083--50674144 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
50674073 TTCGTGCCGG
*
50674083 TGATATTCAGGCTTTGTGCCTAGCAGGCTT
1 TGATATTCAGGATTTGTGCCTAGCAGGCTT
* *
50674113 TGATATTCGGGATTTGTGCCTAGTAGGCTT
1 TGATATTCAGGATTTGTGCCTAGCAGGCTT
50674143 TG
1 TG
50674145 TGCTTGTGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.16, C:0.16, G:0.29, T:0.39
Consensus pattern (30 bp):
TGATATTCAGGATTTGTGCCTAGCAGGCTT
Found at i:50676735 original size:23 final size:23
Alignment explanation
Indices: 50676701--50676746 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
50676691 ATAGGCAATC
50676701 GCTCAAACCCTCAGCTCTTAAAA
1 GCTCAAACCCTCAGCTCTTAAAA
*
50676724 GCTCAAATCCTCAGCTCTTAAAA
1 GCTCAAACCCTCAGCTCTTAAAA
50676747 TTGCTGCTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.33, G:0.09, T:0.24
Consensus pattern (23 bp):
GCTCAAACCCTCAGCTCTTAAAA
Found at i:50678404 original size:17 final size:17
Alignment explanation
Indices: 50678382--50678420 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
50678372 CTGACTCCAT
*
50678382 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
50678399 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
50678416 TTTTA
1 TTTTA
50678421 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:50679464 original size:15 final size:14
Alignment explanation
Indices: 50679446--50679498 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
50679436 TAATCTTTAT
50679446 ATTTTAATTTGATTA
1 ATTTTAATTTG-TTA
*
50679461 ATTTTAATTTTTTTA
1 ATTTTAA-TTTGTTA
* *
50679476 TTTTTGAATTAGTTA
1 ATTTT-AATTTGTTA
50679491 ATTTTAAT
1 ATTTTAAT
50679499 CTCTATACTT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
14 3 0.10
15 23 0.74
16 5 0.16
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (14 bp):
ATTTTAATTTGTTA
Found at i:50679494 original size:30 final size:31
Alignment explanation
Indices: 50679441--50679498 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
50679431 TAATTTAATC
*
50679441 TTTATATTTTAATTTGATTAATTTTAATTTT
1 TTTATATTTTAATTAGATTAATTTTAATTTT
50679472 TTTAT-TTTTGAATTAG-TTAATTTTAAT
1 TTTATATTTT-AATTAGATTAATTTTAAT
50679499 CTCTATACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (31 bp):
TTTATATTTTAATTAGATTAATTTTAATTTT
Found at i:50680058 original size:2 final size:2
Alignment explanation
Indices: 50680051--50680081 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
50680041 ACATGCCTAT
*
50680051 AC AC AC AC AG AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
50680082 AAAAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.45, G:0.03, T:0.00
Consensus pattern (2 bp):
AC
Found at i:50688136 original size:4 final size:4
Alignment explanation
Indices: 50688129--50688163 Score: 61
Period size: 4 Copynumber: 8.8 Consensus size: 4
50688119 TATATATATA
*
50688129 TATG TATG TATG TATG TATG CATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TAT
50688164 ATTTAACACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.26, C:0.03, G:0.23, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:50690709 original size:30 final size:30
Alignment explanation
Indices: 50690675--50690732 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
50690665 TTTTCGGGCA
* *
50690675 TAGGGGTAAAATGGTCATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTCATTTTACCAAAGTT
50690705 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
50690733 ATGTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTT
Found at i:50691223 original size:46 final size:46
Alignment explanation
Indices: 50691073--50691525 Score: 268
Period size: 46 Copynumber: 9.7 Consensus size: 46
50691063 TGATTTGTGT
* * * * *
50691073 GCCAGTGTAAGA-CATGTCTGGGACATGCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATC-GCCATACTATAATA
* * * * **
50691119 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACAAGG
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGCCATAC-TATAATA
*
50691167 GCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCATACTATAATA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATC-GCCATACTATAATA
* *
50691213 GCCAGTGTAAGACCATGTTTGGGACATGGCATCG-GATACTATAATA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGCCATACTATAATA
* * * * *
50691259 GGCAGTGTAAGACCACGTTTGGGACATGGCATTG-GATACTATAATA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGCCATACTATAATA
* * * * *
50691305 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGA-GATGAGT-
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATC-GC-CATACTAT-AATA
* * *
50691353 GCAAGTGTAAGA-CATGTCTGAGACATGCATCGGCC-TCAAC-AGAGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATC-GCCAT--ACTATA-ATA
* * * ** **
50691400 GCCAGTGTAAGA-CATGTCTAGGACACGCATCGGC-TAAGAGTTGT-
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGCCATACTA-TAATA
* * * * *
50691444 GCTAGTGTAAGA-CATGTCTGGGACATGTATCAGCACGCGTA-TATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATC-G--C-CATACTATAATA
*
50691492 GCCAGTGTAAGACCATGTCTGGGACGTGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCG
50691526 GCAATATATC
Statistics
Matches: 325, Mismatches: 57, Indels: 47
0.76 0.13 0.11
Matches are distributed among these distances:
44 28 0.09
45 5 0.02
46 128 0.39
47 91 0.28
48 49 0.15
49 20 0.06
50 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCGCCATACTATAATA
Found at i:50691237 original size:94 final size:94
Alignment explanation
Indices: 50691076--50691528 Score: 423
Period size: 94 Copynumber: 4.9 Consensus size: 94
50691066 TTTGTGTGCC
* * * * * *
50691076 AGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATAATAGCCAGTGTAAGACCATGTCTGG
*
50691141 GACATGGCATCGGCATCCAGACA-AGGGCT
66 GACATGGCATCGGCAT-CAGAGATAGGGCT
*
50691170 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATAATAGCCAGTGTAAGACCATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATAATAGCCAGTGTAAGACCATGTCTGG
*
50691235 GACATGGCATCGG-ATACTATA-ATA-GGC-
66 GACATGGCATCGGCAT-C-AGAGATAGGGCT
* * * * * *
50691262 AGTGTAAGACCACGTTTGGGACATGGCAT-TG-GATACTATAATAGCTAGTGTAAGACCATGTTT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCATACTATAATAGCCAGTGTAAGACCATGTCT
* *
50691325 GGGACATGGCATCGGCA-CAGAGATGAGTGCA
64 GGGACATGGCATCGGCATCAGAGAT-AGGGCT
* * *
50691356 AGTGTAAGACATGTCTGAGACATGCATCGGCC-TCAAC-AGAGATAGCCAGTGTAAGA-CATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATA-ATAGCCAGTGTAAGACCATGTC
* * * * *
50691418 TAGGACA-CGCATCGGC-TAAGAG-TTGTGCT
63 TGGGACATGGCATCGGCATCAGAGATAGGGCT
* * * *
50691447 AGTGTAAGACATGTCTGGGACATGTATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATAATAGCCAGTGTAAGACCATGTC
*
50691511 TGGGACGTGGCATCGGCA
63 TGGGACATGGCATCGGCA
50691529 ATATATCTCA
Statistics
Matches: 298, Mismatches: 38, Indels: 45
0.78 0.10 0.12
Matches are distributed among these distances:
90 2 0.01
91 34 0.11
92 74 0.25
93 62 0.21
94 109 0.37
95 17 0.06
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATAATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAGAGATAGGGCT
Found at i:50692851 original size:18 final size:19
Alignment explanation
Indices: 50692828--50692863 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
50692818 AATCATATCT
50692828 TCTAAGATTGCAT-TCATA
1 TCTAAGATTGCATATCATA
50692846 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
50692864 TGAAGATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:50692871 original size:17 final size:18
Alignment explanation
Indices: 50692831--50692871 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
50692821 CATATCTTCT
*
50692831 AAGATTGCATTCATATCT
1 AAGATTGCATTCATATCG
50692849 AAGATTGCATATCAT-T-G
1 AAGATTGCAT-TCATATCG
50692866 AAGATT
1 AAGATT
50692872 ATATTTCCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 11 0.52
19 4 0.19
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (18 bp):
AAGATTGCATTCATATCG
Found at i:50693329 original size:44 final size:45
Alignment explanation
Indices: 50693216--50693394 Score: 261
Period size: 45 Copynumber: 4.0 Consensus size: 45
50693206 AGGCGATATT
*
50693216 TGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 TGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
* * *
50693261 TGTTATCTTCGATCTACTCCCCGTCTAATACAGATACGCCAAATC
1 TGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
* *
50693306 TGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 TGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
* * * *
50693350 TGTTATCTCCGATTTGCTCCCTGTTTAATACAGAGATGCCAAATC
1 TGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
50693395 ATCTTGGATC
Statistics
Matches: 118, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
44 39 0.33
45 79 0.67
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.32
Consensus pattern (45 bp):
TGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
Found at i:50693379 original size:89 final size:89
Alignment explanation
Indices: 50693227--50693394 Score: 273
Period size: 89 Copynumber: 1.9 Consensus size: 89
50693217 GTTATCTTTG
*
50693227 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCGATCTACTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTACTCCCCGTCTAATAC
*
50693292 AGATACGCCAAATCTGCTTCTTCA
66 AGAGACGCCAAATCTGCTTCTTCA
* * * *
50693316 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCTGTTTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTACTCCCCGTCTAATAC
*
50693381 AGAGATGCCAAATC
66 AGAGACGCCAAATC
50693395 ATCTTGGATC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 72 1.00
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTACTCCCCGTCTAATAC
AGAGACGCCAAATCTGCTTCTTCA
Found at i:50693558 original size:77 final size:78
Alignment explanation
Indices: 50693364--50693627 Score: 397
Period size: 78 Copynumber: 3.4 Consensus size: 78
50693354 ATCTCCGATT
* *
50693364 TGCTCCCTGTTTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTG
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTG
*
50693428 TTATGTCTTCAATC
65 CTATGTCTTCAATC
*
50693442 TGCTCCCCGTCTACTACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTG-
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGC
* *
50693506 TGTGTCTTCGATC
66 TATGTCTTCAATC
*
50693519 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGTTTCAATGAAGGTCAGATCTGC
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGC
50693584 TATGTCTTCAATC
66 TATGTCTTCAATC
* * * **
50693597 TGCTCTCTGTCGAATATGGAGATGCCAAATC
1 TGCTCCCCGTCTAATACAGAGATGCCAAATC
50693628 TGTTTCTTCG
Statistics
Matches: 170, Mismatches: 14, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
77 75 0.44
78 95 0.56
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
TGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGC
TATGTCTTCAATC
Found at i:50695668 original size:40 final size:40
Alignment explanation
Indices: 50695613--50695860 Score: 329
Period size: 40 Copynumber: 6.2 Consensus size: 40
50695603 TGAATGATAC
* * *
50695613 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
50695653 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
50695693 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
50695733 CCAGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
50695773 CCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCTGTAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
50695813 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
50695853 CC-GGCTAA
1 CCGGGCTAA
50695861 ATTCCGAAGA
Statistics
Matches: 182, Mismatches: 25, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
39 5 0.03
40 175 0.96
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:50705961 original size:22 final size:21
Alignment explanation
Indices: 50705926--50706001 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
50705916 AAAAGGTATC
* *
50705926 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
50705947 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
50705970 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
50705989 TGC-AATCATATCT
1 TACAAATCATATCT
50706002 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:50706060 original size:17 final size:19
Alignment explanation
Indices: 50705962--50706052 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
50705952 AATCATATCT
50705962 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
50705981 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
50705999 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
50706016 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
50706035 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
50706053 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:50706071 original size:36 final size:38
Alignment explanation
Indices: 50705955--50706052 Score: 161
Period size: 35 Copynumber: 2.7 Consensus size: 38
50705945 ATTACAAAAT
50705955 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
50705991 CA-ATCATATCTAAGATTG--TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCATATCTAAGATTG
50706026 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTGCATATCAT
50706053 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (38 bp):
CATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:50706207 original size:21 final size:20
Alignment explanation
Indices: 50706169--50706208 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
50706159 TTGGACTTCG
**
50706169 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
50706189 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
50706209 TCTATGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:50715521 original size:47 final size:47
Alignment explanation
Indices: 50715411--50715774 Score: 254
Period size: 47 Copynumber: 7.8 Consensus size: 47
50715401 TGATTTGTGT
* * *
50715411 GCCAGTGTAAGA-CATGTCTGGGACATGCTTCGGC--CACATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCATC-CA-GATAAGA
* * *
50715457 GCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATCCAGACAAGG
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATCCAGATAAGA
* * * * * *
50715505 GCTAGTGTAAG-TCATGTCTGGGACATGCATCAGCCATAC-TATAATA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATC-GGCATCCAGATAAGA
* * *
50715551 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CAAAGATGAGT
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATC-CAGATAAGA
* * *
50715599 GCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGACAGA-GATA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCATC--CAGATAAGA
* * * * *
50715646 GCCAGTGTAAGA-CGTGTCTGGGACACGCATCGGC-T-AAGAGT-TGT
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCATCCAGA-TAAGA
* * *
50715690 GCTAGTGTAAGA-CATGTCTGGGACATTCATCAGCA--CACGTATATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCATCCA-G-ATA--AGA
*
50715738 GCCAGTGTAAGACCATGTCTGGGACGTGGCATCGGCA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCA
50715775 ATATATCCCA
Statistics
Matches: 251, Mismatches: 46, Indels: 38
0.75 0.14 0.11
Matches are distributed among these distances:
43 3 0.01
44 30 0.12
45 2 0.01
46 40 0.16
47 97 0.39
48 56 0.22
49 15 0.06
50 8 0.03
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCATCCAGATAAGA
Found at i:50715580 original size:94 final size:94
Alignment explanation
Indices: 50715409--50715774 Score: 388
Period size: 94 Copynumber: 3.9 Consensus size: 94
50715399 AGTGATTTGT
* * * * * *
50715409 GTGCCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATAAGAGCCAGTGTAAGACCATG
* *
50715474 TCTGGGATATGGCATCGGCATCCAGACAA
66 TCTGGGACATGGCATCGGCATCAAGACAA
* * *
50715503 GGGCTAGTGTAAGTCATGTCTGGGACATGCATCAGCCATACTATAATAGCCAGTGTAAGACCATG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATAAGAGCCAGTGTAAGACCATG
**
50715568 TCTGGGACATGGCATCGGCA-CAAAGATGA
66 TCTGGGACATGGCATCGGCATC-AAGACAA
* * * *
50715597 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAC-AGAGATAGCCAGTGTAAGA-C
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATA-AGAGCCAGTGTAAGACC
* * ***
50715659 GTGTCTGGGACA-CGCATCGGC-T-AAGAGTT
63 ATGTCTGGGACATGGCATCGGCATCAAGACAA
* *
50715688 GTGCTAGTGTAAGACATGTCTGGGACATTCATCAGCACACGTA-TATGAGAGCCAGTGTAAGACC
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGC-CA--TACTATAAGAGCCAGTGTAAGACC
*
50715752 ATGTCTGGGACGTGGCATCGGCA
63 ATGTCTGGGACATGGCATCGGCA
50715775 ATATATCCCA
Statistics
Matches: 227, Mismatches: 32, Indels: 25
0.80 0.11 0.09
Matches are distributed among these distances:
91 37 0.16
92 15 0.07
93 23 0.10
94 134 0.59
95 18 0.08
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (94 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATAAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCATCAAGACAA
Found at i:50715664 original size:141 final size:139
Alignment explanation
Indices: 50715410--50715774 Score: 411
Period size: 141 Copynumber: 2.6 Consensus size: 139
50715400 GTGATTTGTG
* *
50715410 TGCCAGTGTAAGACATGTCTGGGACATGCTTCGGC-CACATTATGAGAGCCAGTGTAAGACCATG
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACACAATATGAGAGCCAGTGTAAGACCATG
* * * * *
50715474 TCTGGGATATGGCATCGGCATCCAGACAAGGGCTAGTGTAAGTCATGTCTGGGACATGCATCAGC
66 TCTGGGACATGGCATCGGCATCCAGACAAGAGCCAGTGTAAGACATGTCTGGGACACGCATC-GC
**
50715539 CATACTA-TAA
130 C-TAAGAGTAA
* *
50715549 TAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACA-AAGATGAGTGCCAGTGTAAGA-C
1 T-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACACAATATGAGAGCCAGTGTAAGACC
* *
50715612 ATGTCTGGGACAT-GCATCGGCCT-C-GACAGAGATAGCCAGTGTAAGACGTGTCTGGGACACGC
63 ATGTCTGGGACATGGCATCGGCATCCAGACA-AG--AGCCAGTGTAAGACATGTCTGGGACACGC
* **
50715674 ATCGGCTAAGAGTTG
125 ATCGCCTAAGAGTAA
* * * *
50715689 TGCTAGTGTAAGACATGTCTGGGACATTCATCAGCACACGTATATGAGAGCCAGTGTAAGACCAT
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAC-AATATGAGAGCCAGTGTAAGACCAT
*
50715754 GTCTGGGACGTGGCATCGGCA
65 GTCTGGGACATGGCATCGGCA
50715775 ATATATCCCA
Statistics
Matches: 190, Mismatches: 24, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
137 9 0.05
138 18 0.09
139 36 0.19
140 38 0.20
141 62 0.33
142 25 0.13
143 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (139 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACACAATATGAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGGCATCCAGACAAGAGCCAGTGTAAGACATGTCTGGGACACGCATCGCC
TAAGAGTAA
Found at i:50719660 original size:22 final size:22
Alignment explanation
Indices: 50719624--50719708 Score: 100
Period size: 22 Copynumber: 3.9 Consensus size: 22
50719614 TCTCCGATTA
*
50719624 TTAGCATATTAATGCTCTCCGT
1 TTAGCACATTAATGCTCTCCGT
* *
50719646 TTAGCACATTCATGCTCTCTGT
1 TTAGCACATTAATGCTCTCCGT
* *
50719668 ATAGTAGC-TTAATGCTCTCCGT
1 TTAGCA-CATTAATGCTCTCCGT
*
50719690 TTAGCACATTCATGCTCTC
1 TTAGCACATTAATGCTCTC
50719709 TGTATAGTAG
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
21 1 0.02
22 49 0.96
23 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (22 bp):
TTAGCACATTAATGCTCTCCGT
Found at i:50719683 original size:44 final size:44
Alignment explanation
Indices: 50719632--50719730 Score: 189
Period size: 44 Copynumber: 2.2 Consensus size: 44
50719622 TATTAGCATA
50719632 TTAATGCTCTCCGTTTAGCACATTCATGCTCTCTGTATAGTAGC
1 TTAATGCTCTCCGTTTAGCACATTCATGCTCTCTGTATAGTAGC
50719676 TTAATGCTCTCCGTTTAGCACATTCATGCTCTCTGTATAGTAGC
1 TTAATGCTCTCCGTTTAGCACATTCATGCTCTCTGTATAGTAGC
*
50719720 TTAGTGCTCTC
1 TTAATGCTCTC
50719731 TATTCGTTAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 54 1.00
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.39
Consensus pattern (44 bp):
TTAATGCTCTCCGTTTAGCACATTCATGCTCTCTGTATAGTAGC
Found at i:50719727 original size:22 final size:21
Alignment explanation
Indices: 50719657--50719731 Score: 80
Period size: 22 Copynumber: 3.4 Consensus size: 21
50719647 TAGCACATTC
50719657 ATGCTCTCTGTATAGTAGCTT
1 ATGCTCTCTGTATAGTAGCTT
* * *
50719678 AATGCTCTCCGTTTAGCA-CATT
1 -ATGCTCTCTGTATAGTAGC-TT
50719700 CATGCTCTCTGTATAGTAGCTT
1 -ATGCTCTCTGTATAGTAGCTT
50719722 AGTGCTCTCT
1 A-TGCTCTCT
50719732 ATTCGTTAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
21 2 0.05
22 40 0.93
23 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.17, T:0.40
Consensus pattern (21 bp):
ATGCTCTCTGTATAGTAGCTT
Found at i:50725935 original size:46 final size:46
Alignment explanation
Indices: 50725882--50726057 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
50725872 TATTTGGGCA
50725882 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
50725928 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
50725975 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
50726021 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50726058 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:50726037 original size:93 final size:93
Alignment explanation
Indices: 50725878--50726049 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50725868 GGGATATTTG
* *
50725878 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
50725943 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
50725971 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
50726036 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
50726050 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:50729024 original size:15 final size:15
Alignment explanation
Indices: 50729004--50729072 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
50728994 GTATCTTGGG
50729004 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
50729019 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
50729034 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
50729049 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
50729064 TTTCTTTAT
1 TTTCTTTAT
50729073 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:50729073 original size:30 final size:30
Alignment explanation
Indices: 50728995--50729082 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
50728985 CATAGTATCG
* * * *
50728995 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
50729025 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
50729055 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
50729083 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:50731520 original size:46 final size:46
Alignment explanation
Indices: 50731467--50731642 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
50731457 TATTTGGGCA
50731467 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
50731513 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
50731560 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
50731606 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50731643 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:50731622 original size:93 final size:93
Alignment explanation
Indices: 50731463--50731634 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50731453 GGGATATTTG
* *
50731463 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
50731528 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
50731556 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
50731621 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
50731635 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:50734608 original size:15 final size:15
Alignment explanation
Indices: 50734588--50734656 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
50734578 GTATCTTGGG
50734588 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
50734603 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
50734618 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
50734633 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
50734648 TTTCTTTAT
1 TTTCTTTAT
50734657 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:50734657 original size:30 final size:30
Alignment explanation
Indices: 50734579--50734666 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
50734569 CATAGTATCG
* * * *
50734579 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
50734609 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
50734639 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
50734667 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:50737102 original size:46 final size:46
Alignment explanation
Indices: 50737049--50737224 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
50737039 TATTTGGGCA
50737049 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
50737095 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
50737142 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
50737188 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50737225 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:50737204 original size:93 final size:93
Alignment explanation
Indices: 50737045--50737216 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50737035 GGGATATTTG
* *
50737045 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
50737110 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
50737138 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
50737203 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
50737217 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:50741968 original size:40 final size:39
Alignment explanation
Indices: 50741923--50742011 Score: 110
Period size: 40 Copynumber: 2.3 Consensus size: 39
50741913 CGGAATACAA
*
50741923 CCGGATATAACCACGT-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCAC-AATTGCCTTC-GGTCTTAAC
* *
50741963 CCGGATGTAGCCACTAGCACAATTGCCTTCGGTCTTAAC
1 CCGGATATAACCACTAGCACAATTGCCTTCGGTCTTAAC
50742002 CCGGATATAA
1 CCGGATATAA
50742012 TTTCCAGCAT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
39 19 0.45
40 23 0.55
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCACTAGCACAATTGCCTTCGGTCTTAAC
Found at i:50745439 original size:48 final size:48
Alignment explanation
Indices: 50745359--50745584 Score: 180
Period size: 48 Copynumber: 4.7 Consensus size: 48
50745349 TAGCTATATG
* *
50745359 CATGATCTGGGACATGGCATTGGCATCGATATGTGATCCCATGTAAGAC
1 CATG-TCTAGGACATGGCATTGGCATCAATATGTGATCCCATGTAAGAC
* * * *
50745408 CATGTATAGGACATGGCATTGGCATCAATATGAGA-CATCGTGTAAGAC
1 CATGTCTAGGACATGGCATTGGCATCAATATGTGATC-CCATGTAAGAC
* * * *
50745456 CATGT-T-GGGCTATCAGCTTTGACATGC---AT-T-ATCCCATGTAAGAC
1 CATGTCTAGGAC-AT-GGCATTGGCAT-CAATATGTGATCCCATGTAAGAC
* * * *
50745500 CATGTCTGGGACATGGAATTGGCATCGATATGTGATCCCATGTAAGGC
1 CATGTCTAGGACATGGCATTGGCATCAATATGTGATCCCATGTAAGAC
* * *
50745548 CATATCTAGGATATGGAATTGGCATCCAACTATGTGA
1 CATGTCTAGGACATGGCATTGGCAT-CAA-TATGTGA
50745585 ATGTGATTTC
Statistics
Matches: 140, Mismatches: 23, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
43 1 0.01
44 22 0.16
45 4 0.03
46 10 0.07
47 5 0.04
48 84 0.60
49 7 0.05
50 7 0.05
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (48 bp):
CATGTCTAGGACATGGCATTGGCATCAATATGTGATCCCATGTAAGAC
Found at i:50750461 original size:24 final size:24
Alignment explanation
Indices: 50750426--50750512 Score: 147
Period size: 24 Copynumber: 3.6 Consensus size: 24
50750416 AATCTCAAAT
*
50750426 GCACTATCTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
50750450 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
*
50750474 GCACTATGTGTACGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
50750498 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
50750513 ACATAATAAG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:50750525 original size:48 final size:48
Alignment explanation
Indices: 50750426--50750532 Score: 153
Period size: 48 Copynumber: 2.2 Consensus size: 48
50750416 AATCTCAAAT
* * ** *
50750426 GCACTATCTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTACGATTTACTATGGCACTATGTGTGCGACATAATATA
50750474 GCACTATGTGTACGATTTACTATGGCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTACGATTTACTATGGCACTATGTGTGCG-ACATAATATA
50750522 GCACTATGTGT
1 GCACTATGTGT
50750533 GCAACGTTTG
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
48 48 0.91
49 5 0.09
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (48 bp):
GCACTATGTGTACGATTTACTATGGCACTATGTGTGCGACATAATATA
Found at i:50762228 original size:46 final size:46
Alignment explanation
Indices: 50762178--50762353 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 46
50762168 TGGTTGAGCA
50762178 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
50762224 TCCGAACTCATTGAGTTGAGTCCGA-TT-TC-GA-GAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* *
50762269 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
50762317 -CTCGAGCTTGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50762354 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 11, Indels: 24
0.75 0.08 0.17
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 1 0.01
45 4 0.04
46 56 0.52
47 24 0.22
48 3 0.03
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:50763866 original size:21 final size:20
Alignment explanation
Indices: 50763814--50763872 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
50763804 TACTGTATTC
50763814 CATAAAATATCTGTTAATAAAA
1 CATAAAA-AT-TGTTAATAAAA
* * *
50763836 TATCAAAATTGTTAACTAATA
1 CATAAAAATTGTTAA-TAAAA
50763857 CATAAAAATTG-TAATA
1 CATAAAAATTGTTAATA
50763873 CAGATAAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
19 2 0.06
20 9 0.29
21 15 0.48
22 5 0.16
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.34
Consensus pattern (20 bp):
CATAAAAATTGTTAATAAAA
Found at i:50778114 original size:13 final size:13
Alignment explanation
Indices: 50778096--50778120 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50778086 GGTTTGTTTA
50778096 TTAAACTAATTAT
1 TTAAACTAATTAT
50778109 TTAAACTAATTA
1 TTAAACTAATTA
50778121 AATGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:50781398 original size:64 final size:66
Alignment explanation
Indices: 50781319--50781480 Score: 177
Period size: 67 Copynumber: 2.5 Consensus size: 66
50781309 AGACATTATG
* * * * * *
50781319 ATGTAGCTAGCTCGCATGGGTGATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTAGTGAAGGACACCATGTAGACAAAAGAGCTACGAGATA
*
50781382 T
66 A
* * *
50781383 ATGTAGCTAGGTCGCATGTGTGGTTCCAGGTGAAGGACACCATGTAGACAAAAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-GTGAAGGACACCATGTAGACAAAAGAGCTACGAGAT
50781448 AA
65 AA
* *
50781450 AT-TGGCTAGGTCACATGGGTGGTACTGAGTG
1 ATGTAGCTAGGTCGCATGGGTGGTACT-AGTG
50781481 TTCTCCATGT
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
64 23 0.29
66 24 0.30
67 32 0.41
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (66 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAGTGAAGGACACCATGTAGACAAAAGAGCTACGAGATA
A
Found at i:50782353 original size:2 final size:2
Alignment explanation
Indices: 50782346--50782385 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
50782336 GTATCATGAC
50782346 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50782386 GACTAGTCTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50785586 original size:68 final size:66
Alignment explanation
Indices: 50785513--50785684 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
50785503 CATCATGTGT
* * * *
50785513 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
50785576 TGTAG
62 TGTAG
** * *
50785581 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
50785646 AG
65 AG
* * * *
50785648 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
50785685 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:50785618 original size:64 final size:64
Alignment explanation
Indices: 50785537--50785720 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
50785527 AGACATTATG
* * *
50785537 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
50785601 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
50785666 AA
63 AA
* * *
50785668 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
50785721 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:50787761 original size:34 final size:34
Alignment explanation
Indices: 50787717--50787786 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
50787707 TTTTTAAGAG
50787717 CAAATCAAGTCGATACAATATAGAAATCATACTT
1 CAAATCAAGTCGATACAATATAGAAATCATACTT
* *
50787751 CAAATTAAGTCGATACAATATAGAAGTCATACTT
1 CAAATCAAGTCGATACAATATAGAAATCATACTT
50787785 CA
1 CA
50787787 TGATTCAGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.46, C:0.17, G:0.10, T:0.27
Consensus pattern (34 bp):
CAAATCAAGTCGATACAATATAGAAATCATACTT
Found at i:50788870 original size:6 final size:6
Alignment explanation
Indices: 50788847--50788933 Score: 101
Period size: 6 Copynumber: 14.7 Consensus size: 6
50788837 TATGCCTTTC
*
50788847 AAAAT- AAAATAA TAAAATT AAAATA AAAATA AAAAT- AAAAT- AAAATA
1 AAAATA AAAAT-A -AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
50788894 AAAATA AAAAT- AAAATA AAAATA AAACTAA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAAT-A AAAATA AAAA
50788934 ATAGGAGGAT
Statistics
Matches: 72, Mismatches: 4, Indels: 11
0.83 0.05 0.13
Matches are distributed among these distances:
5 20 0.28
6 42 0.58
7 5 0.07
8 5 0.07
ACGTcount: A:0.80, C:0.01, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:50788873 original size:11 final size:11
Alignment explanation
Indices: 50788847--50788932 Score: 102
Period size: 11 Copynumber: 7.4 Consensus size: 11
50788837 TATGCCTTTC
50788847 AAAATAAAATAAT
1 AAAAT-AAA-AAT
*
50788860 AAAATTAAAAT
1 AAAATAAAAAT
50788871 AAAAATAAAAAT
1 -AAAATAAAAAT
50788883 AAAAT-AAAAT
1 AAAATAAAAAT
50788893 AAAAATAAAAAT
1 -AAAATAAAAAT
50788905 AAAATAAAAAT
1 AAAATAAAAAT
50788916 AAAACTAAAAAAT
1 AAAA-T-AAAAAT
50788929 AAAA
1 AAAA
50788933 AATAGGAGGA
Statistics
Matches: 66, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
10 5 0.08
11 28 0.42
12 18 0.27
13 15 0.23
ACGTcount: A:0.80, C:0.01, G:0.00, T:0.19
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:50788879 original size:17 final size:16
Alignment explanation
Indices: 50788847--50788925 Score: 108
Period size: 17 Copynumber: 4.9 Consensus size: 16
50788837 TATGCCTTTC
50788847 AAAATAAAAT--AATA
1 AAAATAAAATAAAATA
*
50788861 AAATTAAAATAAAAATA
1 AAAATAAAAT-AAAATA
50788878 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
50788894 AAAATAAAAATAAAATA
1 AAAAT-AAAATAAAATA
50788911 AAAATAAAACTAAAA
1 AAAATAAAA-TAAAA
50788926 AATAAAAAAT
Statistics
Matches: 58, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.16
16 15 0.26
17 34 0.59
ACGTcount: A:0.80, C:0.01, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:50796241 original size:43 final size:41
Alignment explanation
Indices: 50796156--50796275 Score: 100
Period size: 43 Copynumber: 2.9 Consensus size: 41
50796146 ATCTGTGTCA
* * *
50796156 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGATT-AGATT
*
50796198 TATGTATAAGACCATGTCTGGGACATC-GGCATCGTATCT-GATT
1 T-CGTATAAGACCATGTCTGGGACA-CAGGCATCG-AT-TAGATT
* * * * *
50796241 TCGTGTAAGACCCTGTCTAGGATAGAGGCATCGAT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGAT
50796276 ATTGAATTAC
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
41 2 0.03
42 26 0.41
43 31 0.49
44 3 0.05
45 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (41 bp):
TCGTATAAGACCATGTCTGGGACACAGGCATCGATTAGATT
Found at i:50797507 original size:81 final size:80
Alignment explanation
Indices: 50797385--50797555 Score: 243
Period size: 81 Copynumber: 2.1 Consensus size: 80
50797375 GGATAAGTTG
***
50797385 TAGAATTACCGAAATACCCTGTAGGGTAGAAATATTGAAATACCCCTGTAGGGTAGAATTACCGA
1 TAGAATTACCGAAATACCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACCGA
50797450 AATACCCCTGTAGGA
66 AATACCCCTGTAGGA
* *
50797465 TAGAATTACTGAAATACCCTTGTAGGGTAGAAATACCAAAATATCCCTGTAGGGTAGAATTACCG
1 TAGAATTACCGAAATACCC-TGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACCG
* * * *
50797530 AGATACCCTTGTGGGT
65 AAATACCCCTGTAGGA
*
50797546 TAAAATTACC
1 TAGAATTACC
50797556 ATTTTGCCCC
Statistics
Matches: 79, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 18 0.23
81 61 0.77
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (80 bp):
TAGAATTACCGAAATACCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACCGA
AATACCCCTGTAGGA
Found at i:50797552 original size:27 final size:27
Alignment explanation
Indices: 50797384--50797555 Score: 213
Period size: 27 Copynumber: 6.4 Consensus size: 27
50797374 TGGATAAGTT
50797384 GTAGAATTACCGAAATA-CCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* **
50797410 GTAGAAATATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
50797437 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
50797464 ATAGAATTACTGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
50797491 GTAGAAATACCAAAATATCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
50797518 GTAGAATTACCGAGATACCCTTGT-GG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
50797544 GTTAAAATTACC
1 G-TAGAATTACC
50797556 ATTTTGCCCC
Statistics
Matches: 123, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
26 17 0.14
27 106 0.86
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:50798305 original size:31 final size:32
Alignment explanation
Indices: 50798267--50798328 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
50798257 CTTGCTGCAA
* *
50798267 TCTGGTGGCTTCGCCAC-ATA-CATATATCTGT
1 TCTGGTGGCCTAGCCACAATATC-TATATCTGT
50798298 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATCTATATCTG
50798329 GTGACTTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 15 0.56
32 11 0.41
33 1 0.04
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATCTATATCTGT
Found at i:50800359 original size:47 final size:47
Alignment explanation
Indices: 50800293--50800669 Score: 594
Period size: 47 Copynumber: 8.0 Consensus size: 47
50800283 TATCACAGTT
* * * *
50800293 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTATCATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATAC
*
50800340 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
50800387 ATACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
* * *
50800436 ATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
50800483 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
* *
50800530 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
50800577 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
50800624 ATACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
50800670 TACATATCTT
Statistics
Matches: 304, Mismatches: 23, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
47 258 0.85
48 2 0.01
49 44 0.14
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:50800675 original size:143 final size:142
Alignment explanation
Indices: 50800308--50800669 Score: 627
Period size: 143 Copynumber: 2.5 Consensus size: 142
50800298 CTTCCACTTC
*
50800308 CATCACATTGACCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG
1 CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG
50800373 GCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATACAT
66 GCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCAGCCTTAT-ACATATACAT
50800438 ACACCTTCACATT
130 ACACCTTCACATT
50800451 CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG
1 CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG
* *
50800516 GCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT-CATATATATA
66 GCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCAGCCTTATACATATACATA
* *
50800580 TACTTTCACATT
131 CACCTTCACATT
* * * *
50800592 CATCACATTGGCCATTCGGCCTTATCACATACATACACCTTCACATTCATCACATTGGCCATTCG
1 CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG
50800657 GCCTTATCACATA
66 GCCTTATCACATA
50800670 TACATATCTT
Statistics
Matches: 210, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
141 93 0.44
143 117 0.56
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (142 bp):
CATCACATTGGCCATTCGGCCTTATCATATATATATACTTTCACATTCATCACATTGGCCATTCG
GCCTTATCACATACATACACTTTCACATTCATCACATTGGCCATTCAGCCTTATACATATACATA
CACCTTCACATT
Found at i:50809446 original size:27 final size:27
Alignment explanation
Indices: 50809412--50809611 Score: 238
Period size: 27 Copynumber: 7.4 Consensus size: 27
50809402 TGGATAAGTT
* *
50809412 GTAGAATTATCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
50809439 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*** **
50809466 GTAGAATTATATAAATACCTTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
50809493 GTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
50809520 ATAGAATTATCGAAATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
50809547 GTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
50809574 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
50809601 GTAAAATTACC
1 GTAGAATTACC
50809612 ATTTTGCCCC
Statistics
Matches: 144, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:50809496 original size:54 final size:54
Alignment explanation
Indices: 50809412--50809611 Score: 274
Period size: 54 Copynumber: 3.7 Consensus size: 54
50809402 TGGATAAGTT
* *
50809412 GTAGAATTATCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
** * *
50809466 GTAGAATTATATAAATACCTTTGTAGGGTAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* * * *
50809520 ATAGAATTATCGAAATACCCTTATAGGGTAGAAATACCAAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
* * * *
50809574 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACC
50809612 ATTTTGCCCC
Statistics
Matches: 125, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 125 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (54 bp):
GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGG
Found at i:50818080 original size:43 final size:44
Alignment explanation
Indices: 50818015--50818164 Score: 152
Period size: 43 Copynumber: 3.5 Consensus size: 44
50818005 TCTGTGACAT
* *
50818015 CGTGTAAGACCGTGTCTGGGACACAGGCCTCG-ATTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGAATTGAGATTTA
* *
50818058 CGTCTAAGACCATGTCTGGGACATC-GGCATCGCATCT--GATTT-
1 CGTGTAAGACCATGTCTGGGACA-CAGGCATCGAAT-TGAGATTTA
* *
50818100 CGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGA-ATTGAGATTTA
* *
50818143 CATGTAAGACCACGTCTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
50818165 GTTGGCATTG
Statistics
Matches: 89, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
42 31 0.35
43 54 0.61
44 3 0.03
45 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACACAGGCATCGAATTGAGATTTA
Found at i:50822721 original size:28 final size:28
Alignment explanation
Indices: 50822689--50822814 Score: 153
Period size: 28 Copynumber: 4.5 Consensus size: 28
50822679 CAAAAAAGCG
* * *
50822689 AAGTCCACCAAGGACTATCTTAAGAGGA
1 AAGTCTACCAAGGACCATCGTAAGAGGA
*
50822717 AAGTCTACCAAGGACCATCGTAAGTGGA
1 AAGTCTACCAAGGACCATCGTAAGAGGA
* *
50822745 AAGTCTACTAAGGACCATCGTAAGTGGA
1 AAGTCTACCAAGGACCATCGTAAGAGGA
* * * *
50822773 AAGTCCACCAAGGACTATCATAAGAGGG
1 AAGTCTACCAAGGACCATCGTAAGAGGA
*
50822801 AAGTCTGCCAAGGA
1 AAGTCTACCAAGGA
50822815 TAAGTGAAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 85 1.00
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (28 bp):
AAGTCTACCAAGGACCATCGTAAGAGGA
Found at i:50822888 original size:28 final size:28
Alignment explanation
Indices: 50822818--50822882 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 28
50822808 CCAAGGATAA
* *
50822818 GTGAAAAGTCCAG-CAAGGGCAATGTAGG
1 GTGAAATGTCC-GCCAAGGGCAATCTAGG
50822846 GTGAAATGTCCGCCAAGGGCAATCT-GAG
1 GTGAAATGTCCGCCAAGGGCAATCTAG-G
50822874 GTGAAATGT
1 GTGAAATGT
50822883 TTGCCAGGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 2 0.06
28 31 0.94
ACGTcount: A:0.32, C:0.15, G:0.34, T:0.18
Consensus pattern (28 bp):
GTGAAATGTCCGCCAAGGGCAATCTAGG
Found at i:50827764 original size:37 final size:38
Alignment explanation
Indices: 50827694--50827766 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
50827684 TTGTTATGTT
50827694 ATATATGTAATATGTTTCTCTTTTTTTTACATATATTG
1 ATATATGTAATATGTTTCTCTTTTTTTTACATATATTG
50827732 ATATATGTAATATGTTTCT-TTTTTTTTACATATAT
1 ATATATGTAATATGTTTCTCTTTTTTTTACATATAT
50827767 CTTTTTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 16 0.46
38 19 0.54
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.59
Consensus pattern (38 bp):
ATATATGTAATATGTTTCTCTTTTTTTTACATATATTG
Found at i:50840008 original size:31 final size:31
Alignment explanation
Indices: 50839973--50840036 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
50839963 CCTTTTCATA
* *
50839973 TTTCATATTTCATAACACTGGGTCGAATCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
50840004 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
50840035 TT
1 TT
50840037 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:50840285 original size:24 final size:24
Alignment explanation
Indices: 50840245--50840302 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
50840235 CTGGAGGCCT
50840245 AGCCTCTTTTAATAACTGGGGC-AA
1 AGCC-CTTTTAATAACTGGGGCAAA
*
50840269 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAAT-AACTGGGGCAAA
*
50840294 AACCCTTTT
1 AGCCCTTTT
50840303 TGCACTTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 7 0.23
24 13 0.43
25 10 0.33
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCAAA
Found at i:50842773 original size:30 final size:30
Alignment explanation
Indices: 50842737--50842805 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
50842727 GTATCTGCTA
50842737 CCAACTCTGGACCAAGTACTTTCCTTTCCC
1 CCAACTCTGGACCAAGTACTTTCCTTTCCC
50842767 CCAACTCTGGACCAAGTACTTTCCTTTCCC
1 CCAACTCTGGACCAAGTACTTTCCTTTCCC
50842797 CCAACTCTG
1 CCAACTCTG
50842806 CCCAACACGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.20, C:0.41, G:0.10, T:0.29
Consensus pattern (30 bp):
CCAACTCTGGACCAAGTACTTTCCTTTCCC
Found at i:50848040 original size:31 final size:31
Alignment explanation
Indices: 50847977--50848040 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
50847967 CCTTTTCATA
*
50847977 TTTCATATTTCATAACACTGGGTCGAATCCT
1 TTTCATATTTCATAACACTGGGTCGAAGCCT
**
50848008 TTTCATATTTCATATTACTGGG-CTGAAGCCT
1 TTTCATATTTCATAACACTGGGTC-GAAGCCT
50848039 TT
1 TT
50848041 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 1 0.03
31 28 0.97
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.42
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGTCGAAGCCT
Found at i:50850802 original size:72 final size:72
Alignment explanation
Indices: 50850747--50850900 Score: 195
Period size: 72 Copynumber: 2.1 Consensus size: 72
50850737 TGTGATCAGG
** *
50850747 CCCGTGAGTAACTCGCTGAGCGAG-CA-TATCATGTTAATGCTTTGGGGTCTGGGTGCTGACTTT
1 CCCGTGAGTAACTCAATGAGCG-GCCATTA-CATGATAATGCTTTGGGGTCTGGGTGCTGACTTT
*
50850810 GGGCATAAA
64 GTGCATAAA
* * *
50850819 CCCGTGAGTAGCTCAATGAGCGGCCATTACGTGATAATGCTTTGGGGTTTGGGTGCTGACTTTGT
1 CCCGTGAGTAACTCAATGAGCGGCCATTACATGATAATGCTTTGGGGTCTGGGTGCTGACTTTGT
* *
50850884 GTACAAA
66 GCATAAA
50850891 CCCGTGAGTA
1 CCCGTGAGTA
50850901 GTTTAAATGC
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
71 1 0.01
72 68 0.96
73 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (72 bp):
CCCGTGAGTAACTCAATGAGCGGCCATTACATGATAATGCTTTGGGGTCTGGGTGCTGACTTTGT
GCATAAA
Found at i:50853330 original size:20 final size:20
Alignment explanation
Indices: 50853304--50853354 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
50853294 TGAGCAGGGA
*
50853304 CACCGAAGTG-TATACAGAGG
1 CACCGAAGTGCGA-ACAGAGG
*
50853324 CATCGAAGTGCGAACAGAGG
1 CACCGAAGTGCGAACAGAGG
50853344 CACCGAAGTGC
1 CACCGAAGTGC
50853355 AAATCCTGGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 26 0.96
21 1 0.04
ACGTcount: A:0.33, C:0.24, G:0.31, T:0.12
Consensus pattern (20 bp):
CACCGAAGTGCGAACAGAGG
Found at i:50853634 original size:2 final size:2
Alignment explanation
Indices: 50853627--50853659 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
50853617 TTTAAACATC
50853627 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
50853660 CAATCATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50856130 original size:28 final size:29
Alignment explanation
Indices: 50856099--50856153 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
50856089 CCGAAATACT
50856099 GATAT-CATGGCCCAAAGCCAAATCAGCC
1 GATATGCATGGCCCAAAGCCAAATCAGCC
50856127 GATATGCATGGCCCAAAGCCAAATCAG
1 GATATGCATGGCCCAAAGCCAAATCAG
50856154 TTTATCTCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 5 0.19
29 21 0.81
ACGTcount: A:0.36, C:0.29, G:0.20, T:0.15
Consensus pattern (29 bp):
GATATGCATGGCCCAAAGCCAAATCAGCC
Found at i:50859161 original size:29 final size:29
Alignment explanation
Indices: 50859104--50859239 Score: 172
Period size: 29 Copynumber: 4.8 Consensus size: 29
50859094 TACCGGTATC
*
50859104 TGGCCCATTAAGCCC-AATCA--TATTCATA
1 TGGCCCATTAGGCCCAAATCACCTA-T-ATA
50859132 TGGCCCATTAGGCCCAAATCACCTATATA
1 TGGCCCATTAGGCCCAAATCACCTATATA
*
50859161 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACCTATATA
* *
50859190 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACCTATATA
**
50859219 TGGCCTGTTAGGCCC-AATCAC
1 TGGCCCATTAGGCCCAAATCAC
50859240 GTTCATATTC
Statistics
Matches: 99, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
28 20 0.20
29 76 0.77
30 1 0.01
31 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACCTATATA
Found at i:50859197 original size:58 final size:57
Alignment explanation
Indices: 50859104--50859247 Score: 191
Period size: 58 Copynumber: 2.5 Consensus size: 57
50859094 TACCGGTATC
* * *
50859104 TGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATCACCTATATA
1 TGGCCCATTAGGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCACATATATA
* *
50859161 TGGCCCATTAGGCCCAAATCACCTGT-ATATGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATATGGCCCATTAGGCCCAAATCACATATATA
** *
50859219 TGGCCTGTTAGGCCCAATCACGTTCATAT
1 TGGCCCATTAGGCCCAATCACATTCATAT
50859248 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
56 1 0.01
57 25 0.33
58 49 0.64
59 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (57 bp):
TGGCCCATTAGGCCCAATCACATTCATATGGCCCATTAGGCCCAAATCACATATATA
Found at i:50863767 original size:31 final size:31
Alignment explanation
Indices: 50863726--50863789 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
50863716 CCTTTTCATA
*
50863726 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
** *
50863757 TTTCAAATTTCATATTACTGGGCTGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
50863788 TT
1 TT
50863790 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:50864029 original size:23 final size:24
Alignment explanation
Indices: 50863982--50864145 Score: 257
Period size: 23 Copynumber: 7.0 Consensus size: 24
50863972 GCTTTATCAT
*
50863982 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
50864007 ACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50864030 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50864053 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50864076 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50864100 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50864123 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
50864146 TGCACTTCCT
Statistics
Matches: 132, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
23 86 0.65
24 39 0.30
25 7 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:50864093 original size:47 final size:47
Alignment explanation
Indices: 50863982--50864145 Score: 262
Period size: 47 Copynumber: 3.5 Consensus size: 47
50863972 GCTTTATCAT
* *
50863982 ATAACTGGAGGCCT-AGCCTCTTTTAACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCC-TTTA
50864030 ATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
50864076 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
50864123 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
50864146 TGCACTTCCT
Statistics
Matches: 111, Mismatches: 2, Indels: 7
0.93 0.02 0.06
Matches are distributed among these distances:
46 33 0.30
47 70 0.63
48 8 0.07
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:50864103 original size:70 final size:69
Alignment explanation
Indices: 50864003--50864144 Score: 250
Period size: 70 Copynumber: 2.0 Consensus size: 69
50863993 CCTAGCCTCT
50864003 TTTAACAACTGGGGCAAAGCCCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATA
1 TTTAACAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATA
50864067 AGCCC
65 AGCCC
*
50864072 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
1 TTTAACAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATA
50864137 AGCCC
65 AGCCC
50864142 TTT
1 TTT
50864145 TTGCACTTCC
Statistics
Matches: 70, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
69 15 0.21
70 49 0.70
71 6 0.09
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (69 bp):
TTTAACAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAA
GCCC
Found at i:50864218 original size:9 final size:9
Alignment explanation
Indices: 50864204--50864260 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
50864194 ATCTCATGTG
50864204 CATATCATA
1 CATATCATA
*
50864213 CATATCATGTG
1 CATATCA--TA
50864224 CATATCATA
1 CATATCATA
* *
50864233 CATGTCATGTG
1 CATATCA--TA
50864244 CATATCATA
1 CATATCATA
50864253 CATATCAT
1 CATATCAT
50864261 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:50864220 original size:20 final size:20
Alignment explanation
Indices: 50864192--50864262 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
50864182 GCATTTATGA
*
50864192 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
50864212 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
50864232 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
50864252 ACATATCATGT
1 ACATATCATGT
50864263 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:50864227 original size:11 final size:11
Alignment explanation
Indices: 50864197--50864251 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
50864187 TATGAACATC
50864197 TCATGTGCATA
1 TCATGTGCATA
*
50864208 TCA--TACATA
1 TCATGTGCATA
50864217 TCATGTGCATA
1 TCATGTGCATA
* *
50864228 TCA--TACATG
1 TCATGTGCATA
50864237 TCATGTGCATA
1 TCATGTGCATA
50864248 TCAT
1 TCAT
50864252 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:50864341 original size:25 final size:24
Alignment explanation
Indices: 50864299--50864346 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
50864289 ATATATAAAC
* * *
50864299 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAACGGTCA-TTTTA
50864324 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
50864347 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:50865566 original size:27 final size:27
Alignment explanation
Indices: 50865505--50865568 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
50865495 GGCATATTCA
50865505 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGG
* *
50865532 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAGGGG-TATTACGG
*
50865559 TCTTTTTACC
1 TCATTTTACC
50865569 TAATAGGGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGG
Found at i:50865794 original size:27 final size:27
Alignment explanation
Indices: 50865627--50865877 Score: 123
Period size: 27 Copynumber: 9.3 Consensus size: 27
50865617 TCTACAAACT
* *
50865627 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*
50865654 AATGGTATTTCTA-TAATTTT-TAGAAAGTC
1 AAGGGTATTT-TAGTAATTTTGT--AAA-TC
* *
50865683 AAGGGTATTTCT-GTAACTTTGTAAATT
1 AAGGGTATTT-TAGTAATTTTGTAAATC
* * ** *
50865710 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTAGTAATTTTGTAAATC
* ** *** *
50865737 GAGGGT-TTTCGGTAATTTCACAAACC
1 AAGGGTATTTTAGTAATTTTGTAAATC
50865763 AAGGGTATTTTAGTAATTTTGTAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
* **** *
50865790 GAGGGTAAAACAGTAATTCTGTAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
**** * *
50865817 AAGGGTAAAACAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
*** * *
50865844 AAGGGTAAAATAGTAATTCTATAAATC
1 AAGGGTATTTTAGTAATTTTGTAAATC
50865871 AAGGGTA
1 AAGGGTA
50865878 AAACAGTAAT
Statistics
Matches: 184, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
26 23 0.12
27 135 0.73
28 7 0.04
29 18 0.10
30 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (27 bp):
AAGGGTATTTTAGTAATTTTGTAAATC
Found at i:50866093 original size:27 final size:27
Alignment explanation
Indices: 50865775--50866086 Score: 372
Period size: 27 Copynumber: 11.6 Consensus size: 27
50865765 GGGTATTTTA
* * *
50865775 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
*
50865802 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* **
50865829 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
50865856 GTAATTCTATAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
50865883 GTAATTCAGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
50865910 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * * *
50865937 ATAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
50865964 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* *
50865991 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
50866018 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
* * *
50866045 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCAAGGGTAAAACG
50866072 GTAATTCTGTAAATC
1 GTAATTCTGTAAATC
50866087 GGGGGTACTT
Statistics
Matches: 253, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 253 1.00
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCAAGGGTAAAACG
Found at i:50866120 original size:27 final size:27
Alignment explanation
Indices: 50866090--50866188 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
50866080 GTAAATCGGG
*
50866090 GGTACTTT-AGTAATTTTACAAGTCGAA
1 GGTA-TTTCAGTAATTTTACAAATCGAA
* * *
50866117 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCAGTAATTTTACAAATCGAA
* *
50866144 GGTATTTCAGTATTTTTACAAA-CTAA
1 GGTATTTCAGTAATTTTACAAATCGAA
*
50866170 GGGTATTTCGGTAATTTTA
1 -GGTATTTCAGTAATTTTA
50866189 GTAAACTAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.08
27 54 0.92
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAATCGAA
Found at i:50866128 original size:54 final size:53
Alignment explanation
Indices: 50866082--50866186 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 53
50866072 GTAATTCTGT
* *
50866082 AAATCGGGGGTACTTT-AGTAATTTTACAAGTCGAA-GGTATTTCGGTAAATTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCGGT-AATTTAC
* *
50866136 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTT
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTT
50866187 TAGTAAACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
53 11 0.24
54 34 0.76
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.37
Consensus pattern (53 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTTAC
Found at i:50866202 original size:27 final size:27
Alignment explanation
Indices: 50866098--50866203 Score: 74
Period size: 27 Copynumber: 3.9 Consensus size: 27
50866088 GGGGTACTTT
* *
50866098 AGTAATTTTACAAGTCGAAG-GTATTTC
1 AGTAATTTTACAA-ACTAAGAGTATTTC
* * * *
50866125 GGTAAATTTACAAA-TCGAGGGTATTTC
1 AGTAATTTTACAAACT-AAGAGTATTTC
* *
50866152 AGTATTTTTACAAACTAAGGGTATTTC
1 AGTAATTTTACAAACTAAGAGTATTTC
* *
50866179 GGTAATTTTAGTAAACTAA-AGTATT
1 AGTAATTTTA-CAAACTAAGAGTATT
50866204 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.84
28 8 0.13
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (27 bp):
AGTAATTTTACAAACTAAGAGTATTTC
Found at i:50867752 original size:29 final size:29
Alignment explanation
Indices: 50867681--50867806 Score: 136
Period size: 29 Copynumber: 4.4 Consensus size: 29
50867671 TACTGGTATT
*
50867681 TGGCCCATTAAGCCC-AATCA--TATTCATA
1 TGGCCCATTAGGCCCAAATCACCTA-T-ATA
50867709 T-GCCCTATT-GGCCCAAATCACCTATATA
1 TGGCCC-ATTAGGCCCAAATCACCTATATA
*
50867737 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACCTATATA
* * *
50867766 TGGCCCATTAGGCCCAGATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACCTATATA
*
50867795 TGGCCCGTTAGG
1 TGGCCCATTAGG
50867807 ACCAGTCACG
Statistics
Matches: 86, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
27 8 0.09
28 16 0.19
29 60 0.70
30 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACCTATATA
Found at i:50867795 original size:58 final size:56
Alignment explanation
Indices: 50867681--50867823 Score: 146
Period size: 58 Copynumber: 2.5 Consensus size: 56
50867671 TACTGGTATT
* * *
50867681 TGGCCCATTAAGCCCAATCATATTCATATGCCCTATTGGCCCAAATCACCTATATA
1 TGGCCCATTAGGCCCAATCACATTCATATGCCCTATTGGCCCAAATCACATATATA
* * *
50867737 TGGCCCATTAGGCCCAAATCACCTGT-ATATGGCCC-ATTAGGCCCAGATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATAT-GCCCTATT-GGCCCAAATCACATATATA
* * * *
50867795 TGGCCCGTTAGGACCAGTCACGTTCATAT
1 TGGCCCATTAGGCCCAATCACATTCATAT
50867824 TCATACTCAC
Statistics
Matches: 72, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
56 15 0.21
57 23 0.32
58 34 0.47
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (56 bp):
TGGCCCATTAGGCCCAATCACATTCATATGCCCTATTGGCCCAAATCACATATATA
Found at i:50868052 original size:16 final size:16
Alignment explanation
Indices: 50868031--50868089 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 16
50868021 GTAGATAAAC
50868031 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTTGGCA
* * *
50868047 TTTCGGCATTTCGGCT
1 TTTCGGCTTTTTGGCA
** *
50868063 TTTCAACTTTTTGACA
1 TTTCGGCTTTTTGGCA
*
50868079 TTTTGGCTTTT
1 TTTCGGCTTTT
50868090 GCCGATACAT
Statistics
Matches: 31, Mismatches: 12, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.10, C:0.19, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTCGGCTTTTTGGCA
Found at i:50869396 original size:17 final size:16
Alignment explanation
Indices: 50869363--50869394 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50869353 ATGTTCAGTA
*
50869363 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
50869379 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
50869395 GTGTTACAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:50871969 original size:27 final size:28
Alignment explanation
Indices: 50871939--50872038 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
50871929 ATAGTGAGTC
50871939 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
50871966 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
50871994 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
50872025 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50872039 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:50872891 original size:7 final size:7
Alignment explanation
Indices: 50872881--50872905 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
50872871 TCATCACCAC
50872881 AACATCA
1 AACATCA
50872888 AACATCA
1 AACATCA
50872895 AACATCA
1 AACATCA
50872902 AACA
1 AACA
50872906 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:50879106 original size:93 final size:93
Alignment explanation
Indices: 50878976--50879148 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
50878966 CGCCCATAAG
* * * *
50878976 TGAACTCGGACTCAACTCAATGAGCTTGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTTAGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCA
50879041 ACGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
*
50879069 TGAACTCGGACTCAACTCAACGAG-TTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTC
1 TGAACTCGGACTCAACTCAACGAGCTT-AGACGCTCGCATCCATAAGTGAACTCAGACTCAACTC
*
50879133 AACGAGTTCGGATGCC
65 AACGAGCTCGGATGCC
50879149 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTTAGACGCTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:50879130 original size:46 final size:46
Alignment explanation
Indices: 50878969--50879144 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
50878959 TGTAACCCGC
* * *
50878969 CCATAAGTGAACTCGGACTCAACTCAATGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACGCTCGCAT
* * * * *
50879015 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCAT
* *** *
50879061 ACATCTCTTGAACTCGGACTCAACTCAACGAGTTCAGACGCTCGCAT
1 CCAT-AAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
50879108 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50879145 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
45 1 0.01
46 68 0.66
47 34 0.33
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:50879163 original size:46 final size:45
Alignment explanation
Indices: 50879020--50879163 Score: 121
Period size: 46 Copynumber: 3.1 Consensus size: 45
50879010 CGCATCCATA
* * * *
50879020 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * * *
50879068 -TTGAACTCGGACTCAACTCAACGAGTTCAGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
50879113 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
50879159 AGTGA
1 AGTGA
50879164 CATGTCACTT
Statistics
Matches: 74, Mismatches: 17, Indels: 12
0.72 0.17 0.12
Matches are distributed among these distances:
43 4 0.05
46 37 0.50
47 29 0.39
48 4 0.05
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:50883935 original size:33 final size:33
Alignment explanation
Indices: 50883863--50883938 Score: 98
Period size: 33 Copynumber: 2.3 Consensus size: 33
50883853 GTTAGAATCG
* * *
50883863 GCAAGAAGGAAAAAGTATTCAGCTTAGAGCAGT
1 GCAAAAAGTAAAAAGTATTCAGCTTAGAGCAAT
** *
50883896 AAAAAAAGTAAAAAGTATTCGGCTTAGAGCAAT
1 GCAAAAAGTAAAAAGTATTCAGCTTAGAGCAAT
50883929 GCAAAAAGTA
1 GCAAAAAGTA
50883939 CTTACCGACT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.49, C:0.11, G:0.22, T:0.18
Consensus pattern (33 bp):
GCAAAAAGTAAAAAGTATTCAGCTTAGAGCAAT
Found at i:50885275 original size:30 final size:30
Alignment explanation
Indices: 50885239--50885302 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
50885229 AATTCTTGGA
*
50885239 ACACTTAGAAAATTTTACAAAATACAAGGG
1 ACACTTACAAAATTTTACAAAATACAAGGG
*
50885269 ACACTTACAAAATTTTACAAAATACAGGGG
1 ACACTTACAAAATTTTACAAAATACAAGGG
50885299 ACAC
1 ACAC
50885303 ACGCCCGTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.48, C:0.17, G:0.12, T:0.22
Consensus pattern (30 bp):
ACACTTACAAAATTTTACAAAATACAAGGG
Found at i:50888746 original size:40 final size:39
Alignment explanation
Indices: 50888655--50888805 Score: 119
Period size: 40 Copynumber: 3.8 Consensus size: 39
50888645 ATAACCATGT
* * *
50888655 GCACAAATGCCTTCAGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
50888695 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
50888735 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
50888775 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
50888806 TCATTCAATT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 84 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:50888789 original size:80 final size:80
Alignment explanation
Indices: 50888655--50888804 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
50888645 ATAACCATGT
*
50888655 GCACAAATGCCTTCAGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCAGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
50888719 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * * *
50888735 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCAGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
50888798 CCCGGAT
64 CCCGGAT
50888805 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCAGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:50902971 original size:78 final size:82
Alignment explanation
Indices: 50902841--50903024 Score: 229
Period size: 78 Copynumber: 2.3 Consensus size: 82
50902831 ACGACTCGCT
** *
50902841 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTGACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
50902904 GGGTTTAGTAACTT-GCA
65 GGATATAGTAACTTAGCA
* **
50902921 CAAATGCCTTCGGG-CTTAGCCCGGATT-TA-TTACTCGCACGAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTGACTCGCACGAATGCCTTCGGATCCTAACCCG
*
50902983 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
50903000 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50903025 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
77 3 0.03
78 44 0.48
79 28 0.31
80 16 0.18
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTGACTCGCACGAATGCCTTCGGATCCTAACCCG
GATATAGTAACTTAGCA
Found at i:50903024 original size:40 final size:39
Alignment explanation
Indices: 50902834--50903024 Score: 154
Period size: 40 Copynumber: 4.8 Consensus size: 39
50902824 GGATATAACG
* ** * *
50902834 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
50902874 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
50902914 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTA-TT
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
50902952 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
50902992 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
50903025 CATCATTCGA
Statistics
Matches: 120, Mismatches: 23, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
37 2 0.02
38 14 0.12
39 29 0.24
40 65 0.54
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:50905158 original size:16 final size:17
Alignment explanation
Indices: 50905127--50905163 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
50905117 CGATCACCCA
50905127 CTTTCTGGCATTTCAGC
1 CTTTCTGGCATTTCAGC
*
50905144 CTTTC-GGCTTTTCAGC
1 CTTTCTGGCATTTCAGC
50905160 CTTT
1 CTTT
50905164 GTAGTTTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.08, C:0.30, G:0.16, T:0.46
Consensus pattern (17 bp):
CTTTCTGGCATTTCAGC
Found at i:50909532 original size:40 final size:39
Alignment explanation
Indices: 50909367--50909550 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
50909357 AAATTGAATG
* * *
50909367 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
50909407 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
50909447 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
50909487 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
50909526 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
50909551 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:50909575 original size:80 final size:81
Alignment explanation
Indices: 50909407--50909595 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
50909397 GCTGGAAATT
* * * *
50909407 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
50909472 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
50909488 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
50909551 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
50909567 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
50909596 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:50917649 original size:40 final size:39
Alignment explanation
Indices: 50917484--50917667 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
50917474 AAATTGAATG
* * *
50917484 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
50917524 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
50917564 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
50917604 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
50917643 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
50917668 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:50917692 original size:80 final size:81
Alignment explanation
Indices: 50917524--50917712 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
50917514 GCTGGAAATT
* * * *
50917524 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
50917589 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
50917605 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
50917668 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
50917684 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
50917713 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Done.