Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 168 of 425
Found at i:50919638 original size:7 final size:7
Alignment explanation
Indices: 50919620--50919651 Score: 50
Period size: 6 Copynumber: 4.9 Consensus size: 7
50919610 TTGAAATTCA
50919620 AATTTTT
1 AATTTTT
50919627 -ATTTTT
1 AATTTTT
50919633 -ATTTTT
1 AATTTTT
50919639 AATTTTT
1 AATTTTT
50919646 AATTTT
1 AATTTT
50919652 CTTTTCTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 12 0.50
7 12 0.50
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (7 bp):
AATTTTT
Found at i:50923724 original size:28 final size:28
Alignment explanation
Indices: 50923657--50923871 Score: 247
Period size: 28 Copynumber: 7.7 Consensus size: 28
50923647 AGCTCCAGAA
* * ** *
50923657 AAAGGAAAGCATTTATGGAAAACCTTTG
1 AAAGGAAAGCCTTTGTGGCGAACCTCTG
* *
50923685 AAAATGAAAGCCTTTGTGGCAAACCTCT-
1 -AAAGGAAAGCCTTTGTGGCGAACCTCTG
50923713 AAAGGAAAAGCCTTTGTGGCGAACCTCTG
1 AAAGG-AAAGCCTTTGTGGCGAACCTCTG
* *
50923742 AAGGGAAAGCCTTTGTGGCAAACCTCT-
1 AAAGGAAAGCCTTTGTGGCGAACCTCTG
50923769 AAAGGAAAAGCCTTTGTGGCGAACCTCTG
1 AAAGG-AAAGCCTTTGTGGCGAACCTCTG
* *
50923798 AAAGGAAAGCC-TTATGGCGAACCTCTA
1 AAAGGAAAGCCTTTGTGGCGAACCTCTG
* * *
50923825 AAAGGGAAGCTTTTGTGGCGAACCTTTG
1 AAAGGAAAGCCTTTGTGGCGAACCTCTG
*
50923853 AAAGGAAAGCTTTTGTGGC
1 AAAGGAAAGCCTTTGTGGC
50923872 AATTTCTAAA
Statistics
Matches: 162, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
27 31 0.19
28 100 0.62
29 31 0.19
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (28 bp):
AAAGGAAAGCCTTTGTGGCGAACCTCTG
Found at i:50923881 original size:55 final size:56
Alignment explanation
Indices: 50923690--50923873 Score: 282
Period size: 56 Copynumber: 3.3 Consensus size: 56
50923680 CTTTGAAAAT
*
50923690 GAAAGCCTTTGTGGCAAACCTCTAAAGGAAAAGCCTTTGTGGCGAACCTCTGAAGG
1 GAAAGCCTTTGTGGCAAACCTCTAAAGGAAAAGCCTTTGTGGCGAACCTCTGAAAG
50923746 GAAAGCCTTTGTGGCAAACCTCTAAAGGAAAAGCCTTTGTGGCGAACCTCTGAAAG
1 GAAAGCCTTTGTGGCAAACCTCTAAAGGAAAAGCCTTTGTGGCGAACCTCTGAAAG
* * * * *
50923802 GAAAGCC-TTATGGCGAACCTCTAAAAGG-GAAGCTTTTGTGGCGAACCTTTGAAAG
1 GAAAGCCTTTGTGGCAAACCTCT-AAAGGAAAAGCCTTTGTGGCGAACCTCTGAAAG
*
50923857 GAAAGCTTTTGTGGCAA
1 GAAAGCCTTTGTGGCAA
50923874 TTTCTAAACA
Statistics
Matches: 117, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
55 43 0.37
56 74 0.63
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.23
Consensus pattern (56 bp):
GAAAGCCTTTGTGGCAAACCTCTAAAGGAAAAGCCTTTGTGGCGAACCTCTGAAAG
Found at i:50923900 original size:111 final size:109
Alignment explanation
Indices: 50923690--50923929 Score: 256
Period size: 111 Copynumber: 2.2 Consensus size: 109
50923680 CTTTGAAAAT
* *
50923690 GAAAGCCTTTGTGGCAAACCTCTAAAGGAAAAGCCTTTGTGGCGAACCTCTGAAGGGAAAGCCTT
1 GAAAGCC-TTATGGCAAACCTCTAAAGGAAAAGCCTTTGTGGCGAACCTCTGAAAGGAAAGCCTT
* * *
50923755 TGTGGCAAACCTCTAAAGGAAAAGCCTTTGTGGCG-AACCTCTGAAAG
65 TGTGGCAAACCTCTAAAGCAAAAACCCTTGTGGCGCAA--TCT-AAAG
* * * * *
50923802 GAAAGCCTTATGGCGAACCTCTAAAAGG-GAAGCTTTTGTGGCGAACCTTTGAAAGGAAAGCTTT
1 GAAAGCCTTATGGCAAACCTCT-AAAGGAAAAGCCTTTGTGGCGAACCTCTGAAAGGAAAGCCTT
**
50923866 TGTGGC-AATTTCTAAA-CATTAAAACCCTTGTGGCGCAATCTAAAG
65 TGTGGCAAACCTCTAAAGCA--AAAACCCTTGTGGCGCAATCTAAAG
*
50923911 GATAGCCTTACTGG-AAACC
1 GAAAGCCTTA-TGGCAAACC
50923930 ATTTGAAGGG
Statistics
Matches: 109, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
109 18 0.17
110 14 0.13
111 63 0.58
112 14 0.13
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (109 bp):
GAAAGCCTTATGGCAAACCTCTAAAGGAAAAGCCTTTGTGGCGAACCTCTGAAAGGAAAGCCTTT
GTGGCAAACCTCTAAAGCAAAAACCCTTGTGGCGCAATCTAAAG
Found at i:50924972 original size:21 final size:21
Alignment explanation
Indices: 50924948--50924987 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
50924938 CCTAATTACG
50924948 TATTAA-TGAAATGCATAATGA
1 TATTAATTGAAAT-CATAATGA
50924969 TATTAATTGAAATCATAAT
1 TATTAATTGAAATCATAAT
50924988 TGACTGAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (21 bp):
TATTAATTGAAATCATAATGA
Found at i:50926846 original size:13 final size:13
Alignment explanation
Indices: 50926828--50926852 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50926818 CTGAACATAT
50926828 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
50926841 GCCCGTGTCCCT
1 GCCCGTGTCCCT
50926853 CACACGACCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:50928125 original size:51 final size:51
Alignment explanation
Indices: 50928062--50928161 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
50928052 CTACCACATA
* *
50928062 ACATGTAACACATCCATAATGAACTC-GAACCTCTCAACGAGCTCAGATGTT
1 ACATGTAACACATCCATAATGAAATCAG-ACCACTCAACGAGCTCAGATGTT
* *
50928113 ACATG-AATCACATCCATCATGAAATCAGACCACTCAACGAGCTCGGATG
1 ACATGTAA-CACATCCATAATGAAATCAGACCACTCAACGAGCTCAGATG
50928162 CTTGTATCCA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 2 0.05
51 40 0.93
52 1 0.02
ACGTcount: A:0.36, C:0.28, G:0.15, T:0.21
Consensus pattern (51 bp):
ACATGTAACACATCCATAATGAAATCAGACCACTCAACGAGCTCAGATGTT
Found at i:50928199 original size:43 final size:43
Alignment explanation
Indices: 50928124--50928205 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
50928114 CATGAATCAC
* * *
50928124 ATCCATCATGAAATCAGACCACTCAACGAGCTCGGATGCTTGT
1 ATCCATAATGAAATCAGACCACCCAACAAGCTCGGATGCTTGT
* * *
50928167 ATCCATAATGAACTCGGACCTCCCAACAAGCTCGGATGC
1 ATCCATAATGAAATCAGACCACCCAACAAGCTCGGATGC
50928206 CACATATCTC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.21
Consensus pattern (43 bp):
ATCCATAATGAAATCAGACCACCCAACAAGCTCGGATGCTTGT
Found at i:50934996 original size:48 final size:46
Alignment explanation
Indices: 50934939--50935203 Score: 160
Period size: 48 Copynumber: 5.5 Consensus size: 46
50934929 TATGTGTACT
50934939 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATA--TAAGCC
** * * ** * * * *
50934987 AGTGTAAGACACATTTGGGACAGGCATCAGTGTTGAGACGA-GAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGA-TATAAGCC
* * *
50935033 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAAACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGAT--ATAAGCC
* * * *
50935081 AGTGTAAGACCTGTCTAGGACATGGCATC-GACACT-GATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAG-C-CTCGAGATAT-A-AGCC
* * * * * *
50935130 AGTGTAAGACCTATCTAGGACATGGCATCAGCCTC-ACTATGTGAAACCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGA-GATAT--AAGCC
50935179 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
50935204 GCGTCGGCAT
Statistics
Matches: 169, Mismatches: 34, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
46 33 0.20
47 2 0.01
48 61 0.36
49 58 0.34
50 15 0.09
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAAGCC
Found at i:50935102 original size:94 final size:95
Alignment explanation
Indices: 50934937--50935164 Score: 257
Period size: 94 Copynumber: 2.4 Consensus size: 95
50934927 GATATGTGTA
***
50934937 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATTTAAGCCAGTGTAAGACACATT
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAAACAAGCCAGTGTAAGACACATT
*
50935002 TGGGACA-GGCATCAGTGTTGAGACGAGAG
66 TAGGACATGGCATCAGTGTTGAGACGAGAG
* *
50935031 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAAACAAGCTAGTGTAAGAC-C-TG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAAACAAGCCAGTGTAAGACACAT-
* * *
50935094 TCTAGGACATGGCATCGACACTGAT-AGATGAGAG
65 T-TAGGACATGGCAT---CAGTGTTGAGACGAGAG
* * * *
50935128 CCAGTGTAAGACCTATCTAGGACATGGCATCAGCCTC
1 CTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTC
50935165 ACTATGTGAA
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
92 1 0.01
93 2 0.02
94 61 0.54
95 5 0.04
97 29 0.26
98 15 0.13
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (95 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAAACAAGCCAGTGTAAGACACATT
TAGGACATGGCATCAGTGTTGAGACGAGAG
Found at i:50935137 original size:49 final size:49
Alignment explanation
Indices: 50935081--50935205 Score: 148
Period size: 49 Copynumber: 2.5 Consensus size: 49
50935071 TAAACAAGCT
* * *
50935081 AGTGTAAGACCTGTCTAGGACATGGCATC-G--ACACTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCAGCCTCACT-AT-G-TGAAACCC
*
50935130 AGTGTAAGACCTATCTAGGACATGGCATCAGCCTCACTATGTGAAACCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCAGCCTCACTATGTGAAACCC
*
50935179 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTAGGACATGGC
50935206 GTCGGCATCT
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
49 45 0.68
50 15 0.23
51 2 0.03
52 4 0.06
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCAGCCTCACTATGTGAAACCC
Found at i:50942580 original size:18 final size:18
Alignment explanation
Indices: 50942557--50942596 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
50942547 TTCACACTTG
*
50942557 ACATATAGCTCGTTTTAT
1 ACATATAGCTCATTTTAT
50942575 ACATATAGCTCATTTTAT
1 ACATATAGCTCATTTTAT
50942593 ACAT
1 ACAT
50942597 TCAAACTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.42
Consensus pattern (18 bp):
ACATATAGCTCATTTTAT
Found at i:50944129 original size:18 final size:19
Alignment explanation
Indices: 50944106--50944142 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
50944096 TCGGATAACG
50944106 TGCTCT-CATTGCTTCCTC
1 TGCTCTACATTGCTTCCTC
50944124 TGCTCTCACATTGCTTCCT
1 TGCTCT-ACATTGCTTCCT
50944143 TAACTCTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.08, C:0.38, G:0.11, T:0.43
Consensus pattern (19 bp):
TGCTCTACATTGCTTCCTC
Found at i:50954262 original size:16 final size:16
Alignment explanation
Indices: 50954241--50954271 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
50954231 TAAAATAGCT
50954241 AGAGAACCTAAATTAG
1 AGAGAACCTAAATTAG
50954257 AGAGAACCTAAATTA
1 AGAGAACCTAAATTA
50954272 AAGGTATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (16 bp):
AGAGAACCTAAATTAG
Found at i:50955362 original size:48 final size:46
Alignment explanation
Indices: 50955247--50955445 Score: 188
Period size: 46 Copynumber: 4.2 Consensus size: 46
50955237 TGTGTGCTAA
* * * *
50955247 TGTAAGACATGTTTGGGACATGCATCGACCAC-A-CTATGAGAGCTAG
1 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATAT-A-AGCCAG
50955293 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATTCAAGCCAG
1 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATA-T-AAGCCAG
* ** * * *
50955341 TGTAAGACATGTTTGGGACATGTATCGGAATTGAGATGA-GAGCTAG
1 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGAT-ATAAGCCAG
*** *
50955387 TGTAAGACATGTCCAGGACATGCATCAGCCTCGAGATATTTAAGCCAG
1 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATA--TAAGCCAG
50955435 TGTAAGACATG
1 TGTAAGACATG
50955446 GGACATGCAT
Statistics
Matches: 125, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 64 0.51
47 1 0.01
48 56 0.45
49 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATATAAGCCAG
Found at i:50955392 original size:94 final size:93
Alignment explanation
Indices: 50955247--50955508 Score: 343
Period size: 94 Copynumber: 2.8 Consensus size: 93
50955237 TGTGTGCTAA
**** * ***
50955247 TGTAAGACATGTTTGGGACATGCATCGACCACACTATGAGAGCTAGTGTAAGACATGTTTGGGAC
1 TGTAAGACATGTTTGGGACATGCATCGAATTGA-GATGAGAGCTAGTGTAAGACATGTCCAGGAC
50955312 ATGCATCGGCCTCGAGATATTCAAGCCAG
65 ATGCATCGGCCTCGAGATATTCAAGCCAG
*
50955341 TGTAAGACATGTTTGGGACATGTATCGGAATTGAGATGAGAGCTAGTGTAAGACATGTCCAGGAC
1 TGTAAGACATGTTTGGGACATGCATC-GAATTGAGATGAGAGCTAGTGTAAGACATGTCCAGGAC
* *
50955406 ATGCATCAGCCTCGAGATATTTAAGCCAG
65 ATGCATCGGCCTCGAGATATTCAAGCCAG
* *
50955435 TGTAAGACA----TGGGACATGCATCGATGTTGAGATGAGAGCTAGTGTAAGAAATGTCCAGGAC
1 TGTAAGACATGTTTGGGACATGCATCGA-ATTGAGATGAGAGCTAGTGTAAGACATGTCCAGGAC
*
50955496 ATGCAACGGCCTC
65 ATGCATCGGCCTC
50955509 TAGTTAGACA
Statistics
Matches: 150, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
89 2 0.01
90 57 0.38
94 88 0.59
95 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (93 bp):
TGTAAGACATGTTTGGGACATGCATCGAATTGAGATGAGAGCTAGTGTAAGACATGTCCAGGACA
TGCATCGGCCTCGAGATATTCAAGCCAG
Found at i:50955549 original size:30 final size:30
Alignment explanation
Indices: 50955513--50955569 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
50955503 GGCCTCTAGT
50955513 TAGACAAGCTAGTATAAGACCTGTCTGGGA
1 TAGACAAGCTAGTATAAGACCTGTCTGGGA
50955543 TAGACAAGCTAGTATAAGACCTGTCTG
1 TAGACAAGCTAGTATAAGACCTGTCTG
50955570 AGACCTGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (30 bp):
TAGACAAGCTAGTATAAGACCTGTCTGGGA
Found at i:50960380 original size:20 final size:21
Alignment explanation
Indices: 50960342--50960380 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
50960332 TTATAATGAA
50960342 CACACGGGCGTGTTACCCTTC
1 CACACGGGCGTGTTACCCTTC
*
50960363 CACATGGGCGTG-TACCCT
1 CACACGGGCGTGTTACCCT
50960381 GTTTCTAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.36, G:0.26, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTTACCCTTC
Found at i:50964597 original size:74 final size:74
Alignment explanation
Indices: 50964476--50964630 Score: 294
Period size: 74 Copynumber: 2.1 Consensus size: 74
50964466 GCATTACCTG
*
50964476 TATGGTGAGAAGTGTATCATTTACACGGATCACAAGAGCCTTAAGTATCTCCTCACTCAGAAGGA
1 TATGGTAAGAAGTGTATCATTTACACGGATCACAAGAGCCTTAAGTATCTCCTCACTCAGAAGGA
50964541 GCTAAATCT
66 GCTAAATCT
50964550 TATGGTAAGAAGTGTATCATTTACACGGATCACAAGAGCCTTAAGTATCTCCTCACTCAGAAGGA
1 TATGGTAAGAAGTGTATCATTTACACGGATCACAAGAGCCTTAAGTATCTCCTCACTCAGAAGGA
50964615 GCTAAATCT
66 GCTAAATCT
50964624 TA-GGTAA
1 TATGGTAA
50964631 CGTAGATGGA
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
73 5 0.06
74 75 0.94
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (74 bp):
TATGGTAAGAAGTGTATCATTTACACGGATCACAAGAGCCTTAAGTATCTCCTCACTCAGAAGGA
GCTAAATCT
Found at i:50968444 original size:27 final size:27
Alignment explanation
Indices: 50968397--50968448 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
50968387 CCCATACTGA
*
50968397 TAAAATGACTGTTATAACCCTATGAGG
1 TAAAATGACTGATATAACCCTATGAGG
**
50968424 TAAAATGACTGATATGCCCCTATGA
1 TAAAATGACTGATATAACCCTATGA
50968449 TTTGTATAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (27 bp):
TAAAATGACTGATATAACCCTATGAGG
Found at i:50984137 original size:80 final size:80
Alignment explanation
Indices: 50984053--50984201 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
50984043 TATGGTAACC
* * * *
50984053 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
50984117 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
50984133 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
50984198 CCGG
66 CCGG
50984202 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:50984143 original size:40 final size:38
Alignment explanation
Indices: 50984094--50984201 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
50984084 ATCACGATTT
*
50984094 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
50984134 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
50984174 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
50984202 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:50991445 original size:80 final size:80
Alignment explanation
Indices: 50991361--50991509 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
50991351 TATGGTAACC
* * * *
50991361 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
50991425 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
50991441 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
50991506 CCGG
66 CCGG
50991510 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:50991451 original size:40 final size:38
Alignment explanation
Indices: 50991402--50991509 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
50991392 ATCACGATTT
*
50991402 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
50991442 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
50991482 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
50991510 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:50996002 original size:44 final size:43
Alignment explanation
Indices: 50995905--50996023 Score: 145
Period size: 44 Copynumber: 2.8 Consensus size: 43
50995895 CTCGTACAAC
* * **
50995905 GCCAACGTCCCAAACGTGGTCTTACATGTAATCACATATTGAT
1 GCCAACGTCCCAAACGTGGTCTTACACGTAATCACAAATCAAT
50995948 GCC-ACTGTCCCAAACAG-GGTCTTACACGTAAATCACAAATCAAT
1 GCCAAC-GTCCCAAAC-GTGGTCTTACACGT-AATCACAAATCAAT
*
50995992 GCCAACGTCCCAGACGTGGTCTTACACG-AATC
1 GCCAACGTCCCAAACGTGGTCTTACACGTAATC
50996024 TCATATCGGA
Statistics
Matches: 66, Mismatches: 5, Indels: 11
0.80 0.06 0.13
Matches are distributed among these distances:
42 6 0.09
43 24 0.36
44 34 0.52
45 2 0.03
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (43 bp):
GCCAACGTCCCAAACGTGGTCTTACACGTAATCACAAATCAAT
Found at i:51010623 original size:23 final size:23
Alignment explanation
Indices: 51010560--51010702 Score: 214
Period size: 23 Copynumber: 6.1 Consensus size: 23
51010550 CCTAGCCTCT
* *
51010560 TTTAGTAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
** *
51010583 TTTTTGTAAATGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
51010607 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
51010630 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
51010654 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
51010677 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
51010700 TTT
1 TTT
51010703 TGCACTTCCT
Statistics
Matches: 110, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
23 68 0.62
24 42 0.38
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:51010644 original size:47 final size:47
Alignment explanation
Indices: 51010560--51010702 Score: 227
Period size: 47 Copynumber: 3.1 Consensus size: 47
51010550 CCTAGCCTCT
* * *
51010560 TTTAGTAACTGGGGCAAAAGCCCTTTTTG-TAAATGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC-TTTTGATAACTGGGGCATAAGCCC
51010607 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
51010654 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
51010700 TTT
1 TTT
51010703 TGCACTTCCT
Statistics
Matches: 91, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
46 30 0.33
47 61 0.67
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:51010775 original size:9 final size:9
Alignment explanation
Indices: 51010761--51010817 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
51010751 ATCTCATGTG
51010761 CATATCATA
1 CATATCATA
*
51010770 CATATCATGTG
1 CATATCA--TA
51010781 CATATCATA
1 CATATCATA
*
51010790 CATGTCATGTA
1 CATATCA--TA
*
51010801 CATGTCATA
1 CATATCATA
51010810 CATATCAT
1 CATATCAT
51010818 GTTTATCAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 23 0.57
11 17 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:51010777 original size:20 final size:20
Alignment explanation
Indices: 51010749--51010819 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
51010739 GCATTTATGA
*
51010749 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51010769 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
* * *
51010789 ACATGTCATGTACATGTCAT
1 ACATATCATGTGCATATCAT
51010809 ACATATCATGT
1 ACATATCATGT
51010820 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:51016950 original size:39 final size:38
Alignment explanation
Indices: 51016895--51017023 Score: 159
Period size: 39 Copynumber: 3.3 Consensus size: 38
51016885 ATGAGATTGA
*
51016895 AAAAATATCCGAACATGAAGTCTGCAGGCTATATGCTGG
1 AAAAATATCCGGACATGAAGTC-GCAGGCTATATGCTGG
* *
51016934 AAAAATATCCGGACATGAGATTCGCAGGCTATATGCTAG
1 AAAAATATCCGGACATGA-AGTCGCAGGCTATATGCTGG
* * * **
51016973 AAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGG
1 AAAAATATCCGGACATGAAGT-CGCAGGCTATATGCTGG
51017012 AAAAATATCCGG
1 AAAAATATCCGG
51017024 GTTAAAAACC
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 73 0.95
40 3 0.04
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.22
Consensus pattern (38 bp):
AAAAATATCCGGACATGAAGTCGCAGGCTATATGCTGG
Found at i:51023422 original size:51 final size:51
Alignment explanation
Indices: 51023337--51023535 Score: 294
Period size: 51 Copynumber: 3.9 Consensus size: 51
51023327 CGGATACACG
* * *
51023337 GTGGGCTTCACATAATACCAC-CTT-TGTAGGCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGT--CCAAAGCTATTTTATTCACAAA
* *
51023388 GTGACCTTCACATAGTACCACACTTCTGTCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
51023439 GTGGCCTTCACATAGTACCACATTTGTGTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
*
51023490 GTGGCCTTCACATAGTACCACACTTGTGTCAAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
51023536 CGAAGGTTCA
Statistics
Matches: 135, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
51 129 0.96
52 3 0.02
53 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:51023610 original size:24 final size:24
Alignment explanation
Indices: 51023583--51023670 Score: 106
Period size: 24 Copynumber: 3.5 Consensus size: 24
51023573 GTCATGGACG
51023583 TATTTCACTTAGATGCCATGTACT
1 TATTTCACTTAGATGCCATGTACT
*
51023607 TATTTCACTTAGCACATTGCCATGGACT
1 TATTTCACTTAG---A-TGCCATGTACT
*
51023635 TGTTTCACTTAGATGCCATGCT-CT
1 TATTTCACTTAGATGCCATG-TACT
51023659 TATTTCACTTAG
1 TATTTCACTTAG
51023671 CACAATGTCA
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
24 32 0.58
25 1 0.02
27 1 0.02
28 21 0.38
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (24 bp):
TATTTCACTTAGATGCCATGTACT
Found at i:51023615 original size:52 final size:52
Alignment explanation
Indices: 51023559--51023681 Score: 176
Period size: 52 Copynumber: 2.4 Consensus size: 52
51023549 GGGAAATTTC
**
51023559 TCACTTAATACAATGTCATGGACGTATTTCACTTAGATGCCATG-TACTTATT
1 TCACTTAGCACAATGTCATGGACGTATTTCACTTAGATGCCATGCT-CTTATT
* * * *
51023611 TCACTTAGCACATTGCCATGGACTTGTTTCACTTAGATGCCATGCTCTTATT
1 TCACTTAGCACAATGTCATGGACGTATTTCACTTAGATGCCATGCTCTTATT
51023663 TCACTTAGCACAATGTCAT
1 TCACTTAGCACAATGTCAT
51023682 ATCCTAGATA
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
52 61 0.98
53 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (52 bp):
TCACTTAGCACAATGTCATGGACGTATTTCACTTAGATGCCATGCTCTTATT
Found at i:51024151 original size:7 final size:8
Alignment explanation
Indices: 51024129--51024162 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
51024119 CAATGTAACA
51024129 CCCAGAAAT
1 CCCA-AAAT
51024138 CCCAAAAT
1 CCCAAAAT
*
51024146 CCAAAAAT
1 CCCAAAAT
51024154 CCCAAAAT
1 CCCAAAAT
51024162 C
1 C
51024163 TTGAATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 19 0.83
9 4 0.17
ACGTcount: A:0.50, C:0.35, G:0.03, T:0.12
Consensus pattern (8 bp):
CCCAAAAT
Found at i:51025421 original size:16 final size:16
Alignment explanation
Indices: 51025380--51025422 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
51025370 ATGAATCGGC
* *
51025380 AAAAGCCAAAATGCCG
1 AAAAGCCGAAATGCCA
* *
51025396 AAATGTCGAAATGCCA
1 AAAAGCCGAAATGCCA
51025412 AAAAGCCGAAA
1 AAAAGCCGAAA
51025423 GTTTGGCTAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.51, C:0.21, G:0.19, T:0.09
Consensus pattern (16 bp):
AAAAGCCGAAATGCCA
Found at i:51025690 original size:29 final size:29
Alignment explanation
Indices: 51025658--51025747 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
51025648 GGCCCAACGA
51025658 GCCATATAAATGTGATTTGGGCCTAATGG
1 GCCATATAAATGTGATTTGGGCCTAATGG
* * * *
51025687 GCCATATACAGGTGATTTGGGCCTGATAG
1 GCCATATAAATGTGATTTGGGCCTAATGG
* * * *
51025716 GCCATATGACTATGA-TTGGGCTTAATGG
1 GCCATATAAATGTGATTTGGGCCTAATGG
51025744 GCCA
1 GCCA
51025748 GATACAGGTA
Statistics
Matches: 49, Mismatches: 12, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 14 0.29
29 35 0.71
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (29 bp):
GCCATATAAATGTGATTTGGGCCTAATGG
Found at i:51030249 original size:32 final size:32
Alignment explanation
Indices: 51030213--51030276 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
51030203 AACAAACATG
* *
51030213 AATGCTTGCCATAATACAAATTTGCATTTTAT
1 AATGCGTGCCATAATAAAAATTTGCATTTTAT
*
51030245 AATGCGTGTCATAATAAAAATTTGCATTTTAT
1 AATGCGTGCCATAATAAAAATTTGCATTTTAT
51030277 GTTACTTTCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.41
Consensus pattern (32 bp):
AATGCGTGCCATAATAAAAATTTGCATTTTAT
Found at i:51038557 original size:68 final size:64
Alignment explanation
Indices: 51038441--51038699 Score: 233
Period size: 68 Copynumber: 3.9 Consensus size: 64
51038431 TGGATGATAC
** * * *
51038441 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGCTAC
51038505 AAG
64 --G
* *
51038508 ACATTATGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGCTA
51038572 CG
63 CG
* * * *
51038574 GGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAG-G-ACACCATGTAGACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGG-T--A-CTG-AGTGTACACCATGTAGACAAGAGAGC
51038637 TACG
61 TACG
* * *
51038641 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGC
51038700 CGAACTATAT
Statistics
Matches: 159, Mismatches: 20, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 20 0.13
65 5 0.03
66 19 0.12
67 36 0.23
68 51 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:51041550 original size:51 final size:51
Alignment explanation
Indices: 51041477--51041646 Score: 261
Period size: 51 Copynumber: 3.3 Consensus size: 51
51041467 ACCCTTGTAG
* * *
51041477 CCAAACCTATTGTATTCACAAAGTGGCCTTCACATAGTAGCACACTTGTGT
1 CCAAAGCTATTTTATTCACAAAGTGGCCTTCACATAGTACCACACTTGTGT
* *
51041528 CCAAAGCTATTTTATTCGCAAAGTGGCCTACACATAGTACCACACTTGTGT
1 CCAAAGCTATTTTATTCACAAAGTGGCCTTCACATAGTACCACACTTGTGT
* *
51041579 CCAAAGCTATTATATTCACAGAA-TGGCCTTCACATGGTACCACACTTGTGT
1 CCAAAGCTATTTTATTCACA-AAGTGGCCTTCACATAGTACCACACTTGTGT
51041630 CCAAAGCTATTTTATTC
1 CCAAAGCTATTTTATTC
51041647 CTAAGGTTCA
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
51 106 0.98
52 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (51 bp):
CCAAAGCTATTTTATTCACAAAGTGGCCTTCACATAGTACCACACTTGTGT
Found at i:51041726 original size:52 final size:52
Alignment explanation
Indices: 51041670--51041793 Score: 196
Period size: 52 Copynumber: 2.4 Consensus size: 52
51041660 TGGAAATTTC
51041670 TCACTTAGCACAATGCCATTGACTTATTTCACTTAGATGCCAT-GTACTTATT
1 TCACTTAGCACAATGCCATTGACTTATTTCACTTAGATGCCATGGT-CTTATT
* *
51041722 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATTGACTTATTTCACTTAGATGCCATGGTCTTATT
* *
51041774 TCACTTAGCATAATGTCATT
1 TCACTTAGCACAATGCCATT
51041794 TCCTAGATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
52 63 0.97
53 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.39
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATTGACTTATTTCACTTAGATGCCATGGTCTTATT
Found at i:51041747 original size:28 final size:26
Alignment explanation
Indices: 51041670--51041783 Score: 137
Period size: 24 Copynumber: 4.4 Consensus size: 26
51041660 TGGAAATTTC
*
51041670 TCACTTAGCACAATGCCATTGACTTATT
1 TCACTTAG--CAATGCCATGGACTTATT
*
51041698 TCACTTAG--ATGCCATGTACTTATT
1 TCACTTAGCAATGCCATGGACTTATT
51041722 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCA-A-TGCCATGGACTTATT
*
51041750 TCACTTAG--ATGCCATGGTCTTATT
1 TCACTTAGCAATGCCATGGACTTATT
51041774 TCACTTAGCA
1 TCACTTAGCA
51041784 TAATGTCATT
Statistics
Matches: 76, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
24 44 0.58
25 1 0.01
27 1 0.01
28 30 0.39
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (26 bp):
TCACTTAGCAATGCCATGGACTTATT
Found at i:51044747 original size:40 final size:40
Alignment explanation
Indices: 51044696--51044919 Score: 319
Period size: 40 Copynumber: 5.6 Consensus size: 40
51044686 AGCTACTGCT
*
51044696 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51044736 CAAATGCCTTCGGGACTTGGCCCAGATATAGT-ACTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCA
* *
51044776 CAAATGCCTTCGAGACTTAGCCCGGATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
51044816 CCAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
51044856 CAAATGCCTTCGGGACTT-GCCCGGA-ACTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
51044895 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
51044920 TTATCATCCA
Statistics
Matches: 164, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.01
39 36 0.22
40 125 0.76
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:51051926 original size:39 final size:39
Alignment explanation
Indices: 51051662--51051915 Score: 384
Period size: 39 Copynumber: 6.5 Consensus size: 39
51051652 CAAAGCATGA
* *
51051662 GGGACTTTAAGCCCGGATGTAATACCAGCACGGATGCCTTC
1 GGGAC-TT-AGCCCGGATATAATACCAGCACGAATGCCTTC
* * *
51051703 GGGACTTAGCCCGGATATAACACCAACACGAATGCCTTT
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
**
51051742 GGGACTTAGCCCGGATATAGCACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
51051781 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCATT-
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCC-TTC
*
51051820 AGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
* *
51051859 AGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
51051898 GGGACTTAGCCCGGATAT
1 GGGACTTAGCCCGGATAT
51051916 TTTTCCAGCA
Statistics
Matches: 198, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
38 2 0.01
39 187 0.94
40 4 0.02
41 5 0.03
ACGTcount: A:0.28, C:0.28, G:0.24, T:0.20
Consensus pattern (39 bp):
GGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTC
Found at i:51051951 original size:39 final size:39
Alignment explanation
Indices: 51051908--51052039 Score: 203
Period size: 39 Copynumber: 3.4 Consensus size: 39
51051898 GGGACTTAGC
* * *
51051908 CCGGATATTTTTCCAGCACT-TAGCCTACGGACTTTAAGT
1 CCGGATATATTTCCAGCA-TAAAGCCTACGGACTTCAAGT
51051947 CCGGATATATTTCCAGCATAAAGCCTACGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTACGGACTTCAAGT
*
51051986 CCGGATATATTTCCAGCATAAAGCCTGCGGACTTCAAGT
1 CCGGATATATTTCCAGCATAAAGCCTACGGACTTCAAGT
*
51052025 CCGGATATTTTTCCA
1 CCGGATATATTTCCA
51052040 ATACCATGCA
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 1 0.01
39 86 0.99
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.30
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATAAAGCCTACGGACTTCAAGT
Found at i:51052003 original size:117 final size:116
Alignment explanation
Indices: 51051686--51051994 Score: 329
Period size: 117 Copynumber: 2.6 Consensus size: 116
51051676 GGATGTAATA
* * * * * * ***
51051686 CCAGCACGGATGCCTTCGGGACTTAGCCCGGATATAACACCAACACGAATGCCTTTGGGACTTAG
1 CCAGCACGAATGCCAT-AGGACTTAGCCCGGATATAATACCAGCACGAAAGCCTACAGGACTTAG
* ** *
51051751 CCCGGATATAGCACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAATA
65 CCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATTTTT
* *
51051803 CCAGCACGAATGCCATTAGGACTTAGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTTAG
1 CCAGCACGAATGCCA-TAGGACTTAGCCCGGATATAATACCAGCACGAAAGCCTACAGGACTTAG
51051868 CCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATTTTT
65 CCCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATTTTT
** * * * *
51051920 CCAGCACTTA-GCC-TACGGACTTTAAGTCCGGATATATTTCCAGCA-TAAAGCCTAC-GGACTT
1 CCAGCACGAATGCCATA-GGAC-TT-AGCCCGGATATAATACCAGCACGAAAGCCTACAGGACTT
*
51051981 CAAGTCCGGATATA
63 --AGCCCGGATATA
51051995 TTTCCAGCAT
Statistics
Matches: 166, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
114 2 0.01
115 10 0.06
116 12 0.07
117 141 0.85
118 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (116 bp):
CCAGCACGAATGCCATAGGACTTAGCCCGGATATAATACCAGCACGAAAGCCTACAGGACTTAGC
CCGGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATTTTT
Found at i:51056837 original size:31 final size:31
Alignment explanation
Indices: 51056802--51056882 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
51056792 TGAAATTTGA
*
51056802 TATTTGAGTACTTTCAATAGTATTTTGTTCT
1 TATTTGAGTACTTTCAAAAGTATTTTGTTCT
51056833 TATTTGAGTACTTTCAAAAGTATTTTGTTCT
1 TATTTGAGTACTTTCAAAAGTATTTTGTTCT
**
51056864 TATTTGAACACTTTCAAAA
1 TATTTGAGTACTTTCAAAA
51056883 ATTTTGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.49
Consensus pattern (31 bp):
TATTTGAGTACTTTCAAAAGTATTTTGTTCT
Found at i:51065035 original size:31 final size:31
Alignment explanation
Indices: 51064994--51065057 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
51064984 CCTTTTCATA
*
51064994 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
51065025 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
51065056 TT
1 TT
51065058 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:51065306 original size:23 final size:24
Alignment explanation
Indices: 51065238--51065380 Score: 202
Period size: 24 Copynumber: 6.0 Consensus size: 24
51065228 TGCTTTATCA
*
51065238 TATAACTGGAGGCCT-AGCCTCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTT
* *
51065263 AATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
51065287 TATAACTGGGGCA-AAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
51065310 TATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTT
*
51065333 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
*
51065357 GATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
51065381 CACTTCCTCC
Statistics
Matches: 109, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
23 45 0.41
24 52 0.48
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
TATAACTGGGGCATAAGCCCTTTT
Found at i:51065315 original size:47 final size:47
Alignment explanation
Indices: 51065238--51065380 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
51065228 TGCTTTATCA
** *
51065238 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCAAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
51065287 TATAACTGGGGCAAAGCCCTTTTTATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
51065333 AATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
51065381 CACTTCCTCC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
46 15 0.17
47 52 0.60
48 10 0.12
49 9 0.10
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (47 bp):
TATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:51065451 original size:9 final size:9
Alignment explanation
Indices: 51065437--51065493 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
51065427 ATCTCGTGTG
51065437 CATATCATA
1 CATATCATA
*
51065446 CATATCATGTG
1 CATATCA--TA
51065457 CATATCATA
1 CATATCATA
* *
51065466 CATGTCATGTG
1 CATATCA--TA
51065477 CATATCATA
1 CATATCATA
51065486 CATATCAT
1 CATATCAT
51065494 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:51065456 original size:20 final size:20
Alignment explanation
Indices: 51065433--51065495 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
51065423 GAACATCTCG
51065433 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
51065453 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
51065473 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
51065493 TGT
1 TGT
51065496 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:51065576 original size:25 final size:25
Alignment explanation
Indices: 51065530--51065579 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
51065520 TCATATAAAC
* * * *
51065530 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
51065555 CCTAGGGGCAAAACGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
51065580 TTATAAGGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:51066812 original size:27 final size:26
Alignment explanation
Indices: 51066737--51066804 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 26
51066727 GTCATTTCCA
* *
51066737 TACA-GGGTTTACGGACAC-TTACCT
1 TACAGGGGTTTACGGTCACTTTACCC
51066761 TACAGGGGTTTACGGTCACTTTACCC
1 TACAGGGGTTTACGGTCACTTTACCC
51066787 TACAGGGGCTTTACGGTC
1 TACAGGGG-TTTACGGTC
51066805 TTTTTACCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
24 4 0.10
25 13 0.33
26 13 0.33
27 9 0.23
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (26 bp):
TACAGGGGTTTACGGTCACTTTACCC
Found at i:51066820 original size:27 final size:25
Alignment explanation
Indices: 51066737--51066814 Score: 88
Period size: 26 Copynumber: 3.1 Consensus size: 25
51066727 GTCATTTCCA
*
51066737 TACA-GGGTTTACGGACAC-TTACC
1 TACAGGGGTTTACGGTCACTTTACC
51066760 TTACAGGGGTTTACGGTCACTTTACCC
1 -TACAGGGGTTTACGGTCACTTTA-CC
**
51066787 TACAGGGGCTTTACGGTCTTTTTACC
1 TACAGGGG-TTTACGGTCACTTTACC
51066813 TA
1 TA
51066815 ATAGGGTATT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
24 4 0.09
25 13 0.28
26 15 0.32
27 15 0.32
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (25 bp):
TACAGGGGTTTACGGTCACTTTACC
Found at i:51066895 original size:27 final size:27
Alignment explanation
Indices: 51066842--51067428 Score: 162
Period size: 27 Copynumber: 22.0 Consensus size: 27
51066832 TTTCATCCTA
* * * * * *
51066842 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * *
51066869 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAT
* ** *
51066896 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-T
* * *
51066925 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* *
51066952 CAGGGGTATTTTGGTAATTTTA-AAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** * *
51066978 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTCGGTAATTTTATAAAT
* * *
51067004 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTCGGTAATTTTATAAAT
* * *
51067031 CTAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** * *
51067058 TGAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** * * *
51067085 C--GGGTAAAAT-AGTAATTCTGTAAAT
1 CAAGGGT-ATTTCGGTAATTTTATAAAT
** * *
51067110 CAAGGGTAAAAT-AGTAATTCTATAAAT
1 CAAGGGT-ATTTCGGTAATTTTATAAAT
* * *** * *
51067137 CGACGGTAAAACGATAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* ** * *
51067164 CGAGAGGTA-AACAGTAATTCTATAAAT
1 CAAG-GGTATTTCGGTAATTTTATAAAT
**
51067191 -AAGGGTA-AACGGTAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* ** * * *
51067216 CGAGGGTA-AACAGTAATTCTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* *** *
51067242 CGAGGGGTAAAACGGTAATTTTGTAAAT
1 C-AAGGGTATTTCGGTAATTTTATAAAT
* *** * *
51067270 CGAGGGTAAAACGGTAATTATGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
* *** * * *
51067297 C-GGGGTAAAACGATAATTCTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAT
** * *
51067323 CGGGGGTACTTT-GGTAATTTTACAAGT
1 CAAGGGTA-TTTCGGTAATTTTATAAAT
* *
51067350 CGAA-GGTATTTCAGTAA-TTTACAAAT
1 C-AAGGGTATTTCGGTAATTTTATAAAT
* * * *
51067376 CGAGGGTATTTCAGTATTTTTACAAA-
1 CAAGGGTATTTCGGTAATTTTATAAAT
*
51067402 CTAGGGTATTTCGGTAATTTTAGTAAA
1 CAAGGGTATTTCGGTAATTTTA-TAAA
51067429 CTAAAGTATT
Statistics
Matches: 448, Mismatches: 92, Indels: 40
0.77 0.16 0.07
Matches are distributed among these distances:
25 39 0.09
26 140 0.31
27 220 0.49
28 34 0.08
29 15 0.03
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAT
Found at i:51066977 original size:26 final size:27
Alignment explanation
Indices: 51066948--51067078 Score: 130
Period size: 26 Copynumber: 4.9 Consensus size: 27
51066938 GTAACTTTGT
51066948 AAATCAGGGGTATTTTGGTAATTTTA-
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * *
51066974 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* *
51067001 AAACCAGTGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
51067028 AAA-CTA-GGGTATTTTGGTAATTTTAC
1 AAATC-AGGGGTATTTTGGTAATTTTAC
*
51067054 AAAT-TGAGGGTATTTCT-GTAATTTT
1 AAATCAG-GGGTATTT-TGGTAATTTT
51067079 GTAAATCGGG
Statistics
Matches: 87, Mismatches: 10, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
25 1 0.01
26 44 0.51
27 40 0.46
28 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:51067013 original size:53 final size:53
Alignment explanation
Indices: 51066850--51067056 Score: 159
Period size: 53 Copynumber: 3.8 Consensus size: 53
51066840 TACAAGGGTG
* * * * *** *
51066850 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTACAAA-CTAGGGTATTTCGGTAATTTCACAAACCAGTGGTA
* * * * ** * *
51066904 TTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAACTTT-GTAAATCAGGGGTA
1 TTT-TGGTAA-TTTTACAAA--CTAGGGTATTTCGGTAA-TTTCACAAACCAGTGGTA
*
51066960 TTTTGGTAATTTTA-AAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTA
1 TTTTGGTAATTTTACAAACT-AGGGTATTTCGGTAATTTCACAAACCAGTGGTA
* *
51067013 TTTTGGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAA
1 TTTTGGTAATTTTACAAACTAGGGTATTTCGGTAATTTCACAAA
51067057 TTGAGGGTAT
Statistics
Matches: 125, Mismatches: 20, Indels: 17
0.77 0.12 0.10
Matches are distributed among these distances:
52 3 0.02
53 60 0.48
54 13 0.10
55 13 0.10
56 33 0.26
57 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (53 bp):
TTTTGGTAATTTTACAAACTAGGGTATTTCGGTAATTTCACAAACCAGTGGTA
Found at i:51067066 original size:53 final size:52
Alignment explanation
Indices: 51066955--51067078 Score: 153
Period size: 53 Copynumber: 2.3 Consensus size: 52
51066945 TGTAAATCAG
*
51066955 GGGTATTTTGGTAATTTTAAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTAAAACTGAGGGTATTTCGGTAATTTCACAAACCA
* * **
51067007 GTGGTATTTTGGTAATTTTACAAACT-AGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTA-AAACTGAGGGTATTTCGGTAATTTCACAAA-CCA
51067061 GGGTATTTCT-GTAATTTT
1 GGGTATTT-TGGTAATTTT
51067079 GTAAATCGGG
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
52 1 0.02
53 55 0.87
54 7 0.11
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.44
Consensus pattern (52 bp):
GGGTATTTTGGTAATTTTAAAACTGAGGGTATTTCGGTAATTTCACAAACCA
Found at i:51067127 original size:79 final size:78
Alignment explanation
Indices: 51067044--51067327 Score: 272
Period size: 79 Copynumber: 3.6 Consensus size: 78
51067034 GGGTATTTTG
* * ** *
51067044 GTAATTTTACAAATTGAGGGTATTTCTGTAATTTTGTAAATC-GGGTAAAATAGTAATTCTGTAA
1 GTAATTTTATAAATCGAGGGTA-AAC-GTAATTTTGTAAATCGGGGTAAAACAGTAATTCTGTAA
*
51067108 ATCAAGGGTAAAATA
64 ATCAAGGGTAAAACA
* * *
51067123 GTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGAGGT-AAACAGTAATTCTAT
1 GTAATTTTATAAATCGAGGGT-AAACG-TAATTTTGTAAATCG-G-GGTAAAACAGTAATTCTGT
*
51067187 AAAT-AAGGGT-AAACG
62 AAATCAAGGGTAAAACA
* * *
51067202 GTAATTTTATAAATCGAGGGTAAACAGTAATTCTGTAAATCGAGGGGTAAAACGGTAATTTTGTA
1 GTAATTTTATAAATCGAGGGTAAAC-GTAATTTTGTAAATC--GGGGTAAAACAGTAATTCTGTA
* *
51067267 AATCGAGGGTAAAACG
63 AATCAAGGGTAAAACA
* * *
51067283 GTAATTATGTAAATCG-GGGTAAAACGATAATTCTGTAAATCGGGG
1 GTAATTTTATAAATCGAGGGT-AAACG-TAATTTTGTAAATCGGGG
51067328 GTACTTTGGT
Statistics
Matches: 173, Mismatches: 19, Indels: 26
0.79 0.09 0.12
Matches are distributed among these distances:
78 21 0.12
79 76 0.44
80 18 0.10
81 55 0.32
82 3 0.02
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (78 bp):
GTAATTTTATAAATCGAGGGTAAACGTAATTTTGTAAATCGGGGTAAAACAGTAATTCTGTAAAT
CAAGGGTAAAACA
Found at i:51067163 original size:54 final size:53
Alignment explanation
Indices: 51067097--51067330 Score: 285
Period size: 54 Copynumber: 4.4 Consensus size: 53
51067087 GGTAAAATAG
* * * *
51067097 TAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGACGGTAAAACGA
1 TAATTTTGTAAATCGAGGGT-AAACAGTAATTCTATAAATCGAGGGTAAAACGA
* *
51067151 TAATTTTGTAAATCGAGAGGTAAACAGTAATTCTATAAAT-AAGGGT-AAACGG
1 TAATTTTGTAAATCGAG-GGTAAACAGTAATTCTATAAATCGAGGGTAAAACGA
* * *
51067203 TAATTTTATAAATCGAGGGTAAACAGTAATTCTGTAAATCGAGGGGTAAAACGG
1 TAATTTTGTAAATCGAGGGTAAACAGTAATTCTATAAATCGA-GGGTAAAACGA
* * *
51067257 TAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCG-GGGTAAAACGA
1 TAATTTTGTAAATCGAGGGT-AAACAGTAATTCTATAAATCGAGGGTAAAACGA
* *
51067310 TAATTCTGTAAATCGGGGGTA
1 TAATTTTGTAAATCGAGGGTA
51067331 CTTTGGTAAT
Statistics
Matches: 160, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
51 21 0.13
52 23 0.14
53 36 0.22
54 58 0.36
55 22 0.14
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (53 bp):
TAATTTTGTAAATCGAGGGTAAACAGTAATTCTATAAATCGAGGGTAAAACGA
Found at i:51067251 original size:106 final size:106
Alignment explanation
Indices: 51067086--51067330 Score: 305
Period size: 106 Copynumber: 2.3 Consensus size: 106
51067076 TTTGTAAATC
** * *
51067086 GGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGACGGTAAAACGA
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGT-AAACAGTAATTCTATAAATCGACGGTAAAACGA
*
51067151 TAATTTTGTAAATCGAGAGGT-AAACAGTAATTCTATAAATAA
65 TAATTTTGTAAATCGAG-GGTAAAACAGTAATTATATAAATAA
* * * * *
51067193 GGGT-AAACGGTAATTTTATAAATCGAGGGTAAACAGTAATTCTGTAAATCGAGGGGTAAAACGG
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAACAGTAATTCTATAAATCGA-CGGTAAAACGA
* * **
51067257 TAATTTTGTAAATCGAGGGTAAAACGGTAATTATGTAAATCG
65 TAATTTTGTAAATCGAGGGTAAAACAGTAATTATATAAATAA
* *
51067299 GGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 GGGTAAAACGGTAATTCTGTAAATCGAGGGTA
51067331 CTTTGGTAAT
Statistics
Matches: 117, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
105 23 0.20
106 67 0.57
107 27 0.23
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (106 bp):
GGGTAAAACGGTAATTCTGTAAATCGAGGGTAAACAGTAATTCTATAAATCGACGGTAAAACGAT
AATTTTGTAAATCGAGGGTAAAACAGTAATTATATAAATAA
Found at i:51067378 original size:26 final size:26
Alignment explanation
Indices: 51067319--51067421 Score: 102
Period size: 26 Copynumber: 3.9 Consensus size: 26
51067309 ATAATTCTGT
* *
51067319 AAATCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAA-TTTAC
* *
51067346 AAGTCGAAGGTATTTCAGTAATTTAC
1 AAATCGAGGGTATTTCAGTAATTTAC
*
51067372 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTCAGTA-ATTTAC
* *
51067399 AAA-CTAGGGTATTTCGGTAATTT
1 AAATCGAGGGTATTTCAGTAATTT
51067422 TAGTAAACTA
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
25 3 0.05
26 40 0.62
27 21 0.33
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (26 bp):
AAATCGAGGGTATTTCAGTAATTTAC
Found at i:51067422 original size:26 final size:26
Alignment explanation
Indices: 51067336--51067423 Score: 106
Period size: 26 Copynumber: 3.3 Consensus size: 26
51067326 GGGTACTTTG
* *
51067336 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-ACGAGGGTATTTCA
51067363 GTAA-TTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAA-CGAGGGTATTTCA
* * *
51067389 GTATTTTTACAAACTAGGGTATTTCG
1 GTAATTTTACAAACGAGGGTATTTCA
51067415 GTAATTTTA
1 GTAATTTTA
51067424 GTAAACTAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
26 41 0.77
27 12 0.23
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAAACGAGGGTATTTCA
Found at i:51067437 original size:27 final size:26
Alignment explanation
Indices: 51067336--51067438 Score: 73
Period size: 26 Copynumber: 3.9 Consensus size: 26
51067326 GGGTACTTTG
* * *
51067336 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-ACTAAAGTATTTCA
* **
51067363 GTAA-TTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAA-CTAAAGTATTTCA
* ** *
51067389 GTATTTTTACAAACTAGGGTATTTCG
1 GTAATTTTACAAACTAAAGTATTTCA
*
51067415 GTAATTTTAGTAAACTAAAGTATT
1 GTAATTTTA-CAAACTAAAGTATT
51067439 CTAAACATGA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 41 0.64
27 23 0.36
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAAACTAAAGTATTTCA
Found at i:51070241 original size:31 final size:31
Alignment explanation
Indices: 51070200--51070263 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
51070190 CCTTTTCATA
*
51070200 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
51070231 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
51070262 TT
1 TT
51070264 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:51070616 original size:23 final size:24
Alignment explanation
Indices: 51070529--51070631 Score: 181
Period size: 24 Copynumber: 4.3 Consensus size: 24
51070519 TTTTAAAGGG
*
51070529 GCCCTTTTTATAACTGGGGCATAA
1 GCCCTTTTGATAACTGGGGCATAA
51070553 GCCCTTTTGATAACTGGGGCATAA
1 GCCCTTTTGATAACTGGGGCATAA
51070577 GCCCTTTTGATAACTGGGGCATAA
1 GCCCTTTTGATAACTGGGGCATAA
*
51070601 GCCC-TTTAATAACTGGGGCATAA
1 GCCCTTTTGATAACTGGGGCATAA
51070624 GCCCTTTT
1 GCCCTTTT
51070632 TCACTTCCTC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
23 22 0.29
24 54 0.71
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (24 bp):
GCCCTTTTGATAACTGGGGCATAA
Found at i:51070702 original size:9 final size:9
Alignment explanation
Indices: 51070688--51070744 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
51070678 ACATCTCGTG
51070688 CATATCATA
1 CATATCATA
*
51070697 CATATCATGTG
1 CATATCA--TA
51070708 CATATCATA
1 CATATCATA
* *
51070717 CATGTCATGTG
1 CATATCA--TA
51070728 CATATCATA
1 CATATCATA
51070737 CATATCAT
1 CATATCAT
51070745 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:51070710 original size:20 final size:20
Alignment explanation
Indices: 51070685--51070746 Score: 115
Period size: 20 Copynumber: 3.1 Consensus size: 20
51070675 TGAACATCTC
51070685 GTGCATATCATACATATCAT
1 GTGCATATCATACATATCAT
*
51070705 GTGCATATCATACATGTCAT
1 GTGCATATCATACATATCAT
51070725 GTGCATATCATACATATCAT
1 GTGCATATCATACATATCAT
51070745 GT
1 GT
51070747 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (20 bp):
GTGCATATCATACATATCAT
Found at i:51072072 original size:27 final size:27
Alignment explanation
Indices: 51071980--51072065 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
51071970 ATATTCGTCA
51071980 TTACCATACA-GGG-TATTACGG-CACT
1 TTACC-TACAGGGGCTATTACGGTCACT
51072005 TTACCTACAGGGGCTATTACGGTCACT
1 TTACCTACAGGGGCTATTACGGTCACT
**
51072032 TTACCCTACAGGGGCT-TTACGGTCTTT
1 TTA-CCTACAGGGGCTATTACGGTCACT
51072059 TTACCTA
1 TTACCTA
51072066 ATAGGGGTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.07
25 8 0.15
26 12 0.22
27 19 0.35
28 12 0.22
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.33
Consensus pattern (27 bp):
TTACCTACAGGGGCTATTACGGTCACT
Found at i:51072145 original size:26 final size:27
Alignment explanation
Indices: 51072116--51072166 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
51072106 GGTAAATCAC
51072116 AAACCAA-GGTATTTC-AGTAATTTTGT
1 AAACCAATGGTATTTCTA-TAATTTTGT
51072142 AAACCAATGGTATTTCTATAATTTT
1 AAACCAATGGTATTTCTATAATTTT
51072167 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.30
27 15 0.65
28 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (27 bp):
AAACCAATGGTATTTCTATAATTTTGT
Found at i:51072220 original size:56 final size:53
Alignment explanation
Indices: 51072114--51072325 Score: 152
Period size: 53 Copynumber: 4.0 Consensus size: 53
51072104 TTGGTAAATC
* * *
51072114 ACAAACCAA-GGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTT
1 ACAAATCAAGGGTATTTCAGTAA-TTTGTAAACC-AGGGTATTT-TGGTAATTTTT
* * *
51072168 AGAAAGTCAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAA-TTTT
1 ACAAA-TCAAGGGTATTTCAGTAA-TTTGTAAACCA-GGGTATTTTGGTAATTTTT
** * **
51072223 ACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGGGTATTTTGGTAA-TTTT
1 ACAAATCAAGGGTATTTCAGTAATTT-GTAAACCAGGGTATTTTGGTAATTTTT
* * **
51072276 ACAAA-CTAGGGGTATTT-GGTAATTT-TACAAATAGGGTATTTT-GTAATTTT
1 ACAAATC-AAGGGTATTTCAGTAATTTGTA-AACCAGGGTATTTTGGTAATTTT
51072326 GTAAATCGAG
Statistics
Matches: 130, Mismatches: 20, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
50 5 0.04
51 15 0.12
52 8 0.06
53 34 0.26
54 24 0.18
55 13 0.10
56 31 0.24
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (53 bp):
ACAAATCAAGGGTATTTCAGTAATTTGTAAACCAGGGTATTTTGGTAATTTTT
Found at i:51072270 original size:26 final size:26
Alignment explanation
Indices: 51072205--51072325 Score: 167
Period size: 26 Copynumber: 4.7 Consensus size: 26
51072195 TGTAAATCAG
*
51072205 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACT-A
* * *
51072232 GGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAACTA
51072258 GGGTATTTTGGTAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAACTA
51072284 GGGGTA-TTTGGTAATTTTACAAA-TA
1 -GGGTATTTTGGTAATTTTACAAACTA
51072309 GGGTATTTT-GTAATTTT
1 GGGTATTTTGGTAATTTT
51072326 GTAAATCGAG
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
24 13 0.15
25 5 0.06
26 41 0.48
27 26 0.31
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.42
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACTA
Found at i:51072272 original size:53 final size:51
Alignment explanation
Indices: 51072205--51072339 Score: 175
Period size: 53 Copynumber: 2.6 Consensus size: 51
51072195 TGTAAATCAG
51072205 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTT-GGTAATTTCACAAA-CA
* * *
51072258 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTGGTAATTTTACAAATA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTGGTAATTTCACAAACA
** *
51072309 GGGTATTTT-GTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
51072340 AAATAGTAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
50 16 0.22
51 11 0.15
52 14 0.19
53 32 0.44
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (51 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTGGTAATTTCACAAACA
Found at i:51072350 original size:27 final size:26
Alignment explanation
Indices: 51072318--51072433 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 26
51072308 AGGGTATTTT
*
51072318 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAA-A
*
51072345 GTAATTCTGTAAATCAAGGGTAAAAA
1 GTAATTCTGTAAATCGAGGGTAAAAA
* *
51072371 GTAAATTCTATAAATCGAGGGTAAAAC
1 GT-AATTCTGTAAATCGAGGGTAAAAA
*
51072398 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTCTGTAAATCGAGGGTAAAA-A
51072426 GTAATTCT
1 GTAATTCT
51072434 ATAANCCAGC
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
26 3 0.04
27 72 0.94
28 2 0.03
ACGTcount: A:0.42, C:0.08, G:0.20, T:0.30
Consensus pattern (26 bp):
GTAATTCTGTAAATCGAGGGTAAAAA
Found at i:51079234 original size:28 final size:29
Alignment explanation
Indices: 51079167--51079267 Score: 116
Period size: 28 Copynumber: 3.5 Consensus size: 29
51079157 ATAGTGAATC
* *
51079167 CGCACACTTAGTGCTATATAATTTC-AGCT
1 CGCACACTTAGTGCTATACAA-TTCAAACT
*
51079196 CGCACACTTAGTGCTATAGAA-TCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
* * *
51079224 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATACAA-TTCAAACT
51079254 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51079268 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 22 0.35
29 20 0.32
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:51082358 original size:19 final size:19
Alignment explanation
Indices: 51082336--51082372 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
51082326 TTGTAGGAGA
51082336 TTTGCACTTCGATGCCCTG
1 TTTGCACTTCGATGCCCTG
*
51082355 TTTGCACTTCGGTGCCCT
1 TTTGCACTTCGATGCCCT
51082373 TGTATACACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.32, G:0.22, T:0.38
Consensus pattern (19 bp):
TTTGCACTTCGATGCCCTG
Found at i:51082384 original size:20 final size:19
Alignment explanation
Indices: 51082340--51082384 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
51082330 AGGAGATTTG
* *
51082340 CACTTCGATGCCCTGTTTG
1 CACTTCGATGCCCTGTATA
*
51082359 CACTTCGGTGCCCTTGTATA
1 CACTTCGATGCCC-TGTATA
51082379 CACTTC
1 CACTTC
51082385 CGTGTCTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.13, C:0.33, G:0.18, T:0.36
Consensus pattern (19 bp):
CACTTCGATGCCCTGTATA
Found at i:51083171 original size:20 final size:20
Alignment explanation
Indices: 51083146--51083183 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
51083136 AAGCTTATGC
*
51083146 TAAGTAAATGGAATGATTAG
1 TAAGTAAATGAAATGATTAG
51083166 TAAGTAAATGAAATGATT
1 TAAGTAAATGAAATGATT
51083184 CACCGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (20 bp):
TAAGTAAATGAAATGATTAG
Found at i:51084617 original size:12 final size:12
Alignment explanation
Indices: 51084597--51084627 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
51084587 CCTCACACGC
51084597 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
51084609 CCTTGTGCTAGG
1 CCGTGTGCTAGG
51084621 CCGTGTG
1 CCGTGTG
51084628 AAGCTACTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.06, C:0.26, G:0.39, T:0.29
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:51096039 original size:30 final size:29
Alignment explanation
Indices: 51095945--51096046 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
51095935 TATAGTGAAT
* * *
51095945 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
51095974 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
51096002 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
51096032 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
51096047 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:51100339 original size:30 final size:30
Alignment explanation
Indices: 51100305--51100365 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
51100295 TTCCCGAGCC
51100305 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * * *
51100335 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
51100365 T
1 T
51100366 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:51101147 original size:68 final size:66
Alignment explanation
Indices: 51101073--51101244 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
51101063 CATCATGTGT
* * * *
51101073 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
51101136 TGTAG
62 TGTAG
** * *
51101141 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
51101206 AG
65 AG
* * * *
51101208 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
51101245 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:51101178 original size:64 final size:64
Alignment explanation
Indices: 51101097--51101280 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
51101087 AGACATTATG
* * *
51101097 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
51101161 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
51101226 AA
63 AA
* * *
51101228 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
51101281 CGAACTCTAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:51102361 original size:2 final size:2
Alignment explanation
Indices: 51102354--51102380 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
51102344 TCATGACATG
51102354 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
51102381 GACTAGTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51104062 original size:29 final size:27
Alignment explanation
Indices: 51104028--51104130 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
51104018 TACTCAATCA
*
51104028 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
51104057 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
51104086 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
51104115 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
51104131 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:51108555 original size:63 final size:63
Alignment explanation
Indices: 51108475--51108657 Score: 183
Period size: 63 Copynumber: 2.8 Consensus size: 63
51108465 AGACATTATG
* * *
51108475 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTAACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTAACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
51108538 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTA-ACCATGTAGACAAGAGAGCTACGAGAT
51108603 AA
62 AA
* * *
51108605 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTG-TAACCATGTAG-ACAAGAGAGC
51108658 CGAACTCTAT
Statistics
Matches: 97, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
62 1 0.01
63 42 0.43
64 1 0.01
65 2 0.02
66 21 0.22
67 30 0.31
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTAACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:51109740 original size:2 final size:2
Alignment explanation
Indices: 51109733--51109757 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
51109723 TCATGACATG
51109733 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
51109758 GACTAGTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51112087 original size:29 final size:28
Alignment explanation
Indices: 51112031--51112109 Score: 88
Period size: 29 Copynumber: 2.8 Consensus size: 28
51112021 TGAATGTGAC
* *
51112031 TGGGCCTAACGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATACAGATGA-T
*
51112060 TGGGCCTAATGGGCCATAT-CAATATGAT
1 TGGGCCTAATGGGCCATATAC-AGATGAT
* *
51112088 TGGGCTTAATGGGCCAGATACA
1 TGGGCCTAATGGGCCATATACA
51112110 TGTATGTGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
28 20 0.47
29 23 0.53
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (28 bp):
TGGGCCTAATGGGCCATATACAGATGAT
Found at i:51118239 original size:14 final size:14
Alignment explanation
Indices: 51118220--51118247 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51118210 TAGGCTTAGA
51118220 GTTGGCCATCGTCT
1 GTTGGCCATCGTCT
51118234 GTTGGCCATCGTCT
1 GTTGGCCATCGTCT
51118248 ATTGACCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.29, T:0.36
Consensus pattern (14 bp):
GTTGGCCATCGTCT
Found at i:51121180 original size:23 final size:25
Alignment explanation
Indices: 51121118--51121183 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 25
51121108 GGTTAGATAG
*
51121118 TTTGCTAATTTT-ATTAATTTATTATT
1 TTTGCTTATTTTCATT--TTTATTATT
51121144 TTTGCTTTATTTTCATTTTTATTATT
1 TTTGC-TTATTTTCATTTTTATTATT
51121170 TTTG-TTA-TTTCATT
1 TTTGCTTATTTTCATT
51121184 AATTTCCTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
23 7 0.19
24 3 0.08
26 18 0.49
27 6 0.16
28 3 0.08
ACGTcount: A:0.20, C:0.06, G:0.05, T:0.70
Consensus pattern (25 bp):
TTTGCTTATTTTCATTTTTATTATT
Found at i:51126478 original size:29 final size:29
Alignment explanation
Indices: 51126417--51126515 Score: 159
Period size: 28 Copynumber: 3.5 Consensus size: 29
51126407 ACAGTAAGTC
*
51126417 CGCACACTTAGTGCT-TA-ATATTCAAACC
1 CGCACACTTAGTGCTATACA-ATTCAAACT
51126445 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
51126474 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
51126502 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51126516 CAATCTCATT
Statistics
Matches: 68, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
28 34 0.50
29 33 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:51133539 original size:20 final size:20
Alignment explanation
Indices: 51133485--51133539 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
51133475 TAGTTTGTCC
* *
51133485 AGCTCACAACCAGCTCAGCA
1 AGCTCACATCCAGCTCAACA
** *
51133505 AGCTCAGTTCTAGCTCAACA
1 AGCTCACATCCAGCTCAACA
*
51133525 AGTTCACATCCAGCT
1 AGCTCACATCCAGCT
51133540 AAATTCTAGC
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.35, G:0.15, T:0.20
Consensus pattern (20 bp):
AGCTCACATCCAGCTCAACA
Found at i:51136941 original size:43 final size:42
Alignment explanation
Indices: 51136890--51137043 Score: 149
Period size: 38 Copynumber: 3.8 Consensus size: 42
51136880 GTTTATTTAA
51136890 AAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTCTTC
1 AAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTCTTC
* * *
51136932 AAACAACGCCGC----G-TCATGGCCTTTAGCGGCGCTTCTCCC
1 AAA-AACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTCT-TC
* ** *
51136971 AAAAACGCCGCTAAAGACCATGACTTTTAATGGCGCTTTTTC
1 AAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTCTTC
* * * *
51137013 ACAAACGCCGCTATATAACA-GACCTTTAGCG
1 AAAAACGCCGCTAAAGACCATGACCTTTAGCG
51137044 ACACTTTTTT
Statistics
Matches: 88, Mismatches: 17, Indels: 15
0.73 0.14 0.12
Matches are distributed among these distances:
38 29 0.33
39 5 0.06
41 8 0.09
42 21 0.24
43 25 0.28
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.23
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTCTTC
Found at i:51141869 original size:22 final size:22
Alignment explanation
Indices: 51141842--51141889 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
51141832 AACGCCACTA
*
51141842 TTTTAATTTTAATTTTTT-TATT
1 TTTTAA-TATAATTTTTTCTATT
*
51141864 TTTTAATATATTTTTTTCTATT
1 TTTTAATATAATTTTTTCTATT
51141886 TTTT
1 TTTT
51141890 CTTTCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTAATATAATTTTTTCTATT
Found at i:51141887 original size:20 final size:22
Alignment explanation
Indices: 51141839--51141887 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
51141829 ACAAACGCCA
*
51141839 CTATTTTAATTTTAATTTTTTT
1 CTATTTTAATTATAATTTTTTT
* *
51141861 ATTTTTTAA-TAT-ATTTTTTT
1 CTATTTTAATTATAATTTTTTT
51141881 CTATTTT
1 CTATTTT
51141888 TTCTTTCAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 13 0.59
21 2 0.09
22 7 0.32
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.73
Consensus pattern (22 bp):
CTATTTTAATTATAATTTTTTT
Found at i:51142000 original size:21 final size:21
Alignment explanation
Indices: 51141976--51142017 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
51141966 ATGTGGACTA
51141976 AAATATTAAACGTTAATTTTT
1 AAATATTAAACGTTAATTTTT
* **
51141997 AAATTTTAAATTTTAATTTTT
1 AAATATTAAACGTTAATTTTT
51142018 TTATAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (21 bp):
AAATATTAAACGTTAATTTTT
Found at i:51143292 original size:40 final size:40
Alignment explanation
Indices: 51143201--51143310 Score: 118
Period size: 41 Copynumber: 2.8 Consensus size: 40
51143191 AAATTCTTTT
* *
51143201 GCGGCGTTTTTAAAAAAGCGGCGCTAAAGGTGTACCTATA
1 GCGGCGTTTTTAAAAAAGCGCCGCTAAAGCTGTACCTATA
* *
51143241 GCGGCGTTTTTTAAAAAAGCGCCGCTAATA-CTCG-ATCTTTA
1 GCGGCG-TTTTTAAAAAAGCGCCGCTAA-AGCT-GTACCTATA
* *
51143282 GTGGCGTTTTT-AAAAAGTGCCGCTAAAGC
1 GCGGCGTTTTTAAAAAAGCGCCGCTAAAGC
51143311 CATTAAAAGC
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
38 1 0.02
39 15 0.25
40 11 0.18
41 31 0.52
42 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (40 bp):
GCGGCGTTTTTAAAAAAGCGCCGCTAAAGCTGTACCTATA
Found at i:51143460 original size:81 final size:80
Alignment explanation
Indices: 51143375--51143543 Score: 180
Period size: 80 Copynumber: 2.1 Consensus size: 80
51143365 TTTGAAAAAT
** * * *
51143375 GCCGCTAAAAGATTGAGCATTAGCGGCGTTTTATAG-AAAGCGCCGCTAAAGGT-GTACTTATAG
1 GCCGCTAAAA-ATCAAGCATTAGCGGCGTTTTATAGAAAAGCACCGCTAAAGCTCATACTT-TAG
51143438 CGGCGTTTTTAAAAAAGC
64 CGGCG-TTTTAAAAAAGC
* * * * * * *
51143456 GCCGCTAATAATCAATCTTTAGCGGCGTTTTTTTGAAAAGCACCGCTAATGCTCATTCTTTAGCG
1 GCCGCTAAAAATCAAGCATTAGCGGCGTTTTATAGAAAAGCACCGCTAAAGCTCATACTTTAGCG
*
51143521 GCGTTTTCAAAAAGC
66 GCGTTTTAAAAAAGC
51143536 GCCGCTAA
1 GCCGCTAA
51143544 TTCTCGTTCA
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
80 38 0.52
81 31 0.42
82 4 0.05
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (80 bp):
GCCGCTAAAAATCAAGCATTAGCGGCGTTTTATAGAAAAGCACCGCTAAAGCTCATACTTTAGCG
GCGTTTTAAAAAAGC
Found at i:51143488 original size:41 final size:40
Alignment explanation
Indices: 51143435--51143585 Score: 160
Period size: 41 Copynumber: 3.7 Consensus size: 40
51143425 GGTGTACTTA
* * *
51143435 TAGCGGCGTTTTTAAAAAAGCGCCGCTAATAATCAATCTT
1 TAGCGGCGTTTTTAAAAAAGCACCGCTAATACTCATTCTT
** *
51143475 TAGCGGCGTTTTTTTGAAAAGCACCGCTAATGCTCATTCTT
1 TAGCGGCG-TTTTTAAAAAAGCACCGCTAATACTCATTCTT
* * * * *
51143516 TAGCGGCG-TTTTCAAAAAGCGCCGCTAATTCTCGTTCAT
1 TAGCGGCGTTTTTAAAAAAGCACCGCTAATACTCATTCTT
*
51143555 TAGCGGCGTTTTTATTAAAAAACACCGCTAA
1 TAGCGGCGTTTTTA--AAAAAGCACCGCTAA
51143586 AAATGCCGCT
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
39 33 0.36
40 12 0.13
41 34 0.37
42 13 0.14
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (40 bp):
TAGCGGCGTTTTTAAAAAAGCACCGCTAATACTCATTCTT
Found at i:51143544 original size:80 final size:82
Alignment explanation
Indices: 51143435--51143585 Score: 216
Period size: 80 Copynumber: 1.9 Consensus size: 82
51143425 GGTGTACTTA
* * *
51143435 TAGCGGCGTTTTTAAAAAAGCGCCGCTAATAATCAATCTTTAGCGGCGTTTTT-TTGAAAAGCAC
1 TAGCGGCGTTTTTAAAAAAGCGCCGCTAATAATCAATCATTAGCGGCGTTTTTATTAAAAAACAC
51143499 CGCTAATGCTCATTCTT
66 CGCTAATGCTCATTCTT
* ** **
51143516 TAGCGGCG-TTTTCAAAAAGCGCCGCTAATTCTCGTTCATTAGCGGCGTTTTTATTAAAAAACAC
1 TAGCGGCGTTTTTAAAAAAGCGCCGCTAATAATCAATCATTAGCGGCGTTTTTATTAAAAAACAC
51143580 CGCTAA
66 CGCTAA
51143586 AAATGCCGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 38 0.62
81 23 0.38
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (82 bp):
TAGCGGCGTTTTTAAAAAAGCGCCGCTAATAATCAATCATTAGCGGCGTTTTTATTAAAAAACAC
CGCTAATGCTCATTCTT
Found at i:51145401 original size:23 final size:23
Alignment explanation
Indices: 51145375--51145451 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
51145365 TTAAATAATA
*
51145375 TATTTTGAATAAATTTCTACATT
1 TATTTTGAATAAATTTATACATT
* *
51145398 TATTTATTAGCAAAAAAATTATACATT
1 TA-TT-TT-G-AATAAATTTATACATT
* * *
51145425 TATTTTAAATAAATTTATTCTTT
1 TATTTTGAATAAATTTATACATT
51145448 TATT
1 TATT
51145452 AAATAGTATA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
23 18 0.43
24 2 0.05
25 4 0.10
26 3 0.07
27 15 0.36
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (23 bp):
TATTTTGAATAAATTTATACATT
Found at i:51147983 original size:32 final size:32
Alignment explanation
Indices: 51147940--51148003 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
51147930 GCCCATGCCT
* *
51147940 AAATTTTAGAATTTTTTGATGATTTTGTGATA
1 AAATTTCAGAATTTGTTGATGATTTTGTGATA
51147972 AAATTTCAGAATTTGTTGATGATTTTGTGATA
1 AAATTTCAGAATTTGTTGATGATTTTGTGATA
51148004 TTCCATTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (32 bp):
AAATTTCAGAATTTGTTGATGATTTTGTGATA
Found at i:51148793 original size:43 final size:43
Alignment explanation
Indices: 51148645--51148815 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 43
51148635 AGGAATTCCG
* * * *
51148645 TATTTGATTTCGTATAAGACCACATCTGGGACATTGGCA-TCA
1 TATTTGATTACATGTAAGACCACATCTGGGACATTGGCATTGA
* ** * *
51148687 -ATTTGAGATTCACGTGTAAGACCATGTCTGGGACATCGGCATCG-
1 TATTT--GATT-ACATGTAAGACCACATCTGGGACATTGGCATTGA
* * *
51148731 TAATTGATTTCATGTAAGACC-CTATCTGGGACAGTGGCATTGA
1 TATTTGATTACATGTAAGACCAC-ATCTGGGACATTGGCATTGA
*
51148774 TATTTGATTACATGTAAGACCACATCTGGGACTTTGGCATTG
1 TATTTGATTACATGTAAGACCACATCTGGGACATTGGCATTG
51148816 TACGAGCTTT
Statistics
Matches: 102, Mismatches: 19, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
41 4 0.04
42 25 0.25
43 44 0.43
44 26 0.25
45 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
TATTTGATTACATGTAAGACCACATCTGGGACATTGGCATTGA
Found at i:51150040 original size:41 final size:41
Alignment explanation
Indices: 51149963--51150041 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
51149953 CTAGAAACAA
**
51149963 GGGCATGTCTAATGCCGTGTGGGCACATGGTTTATTCATAC
1 GGGCATGTCTAATGCCGTGTGGGCACATGGCCTATTCATAC
* *
51150004 GGGCGTGTTTAATGCCGTGTGGGCACATGGCCTATTCA
1 GGGCATGTCTAATGCCGTGTGGGCACATGGCCTATTCA
51150042 CCCAGGCGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.18, C:0.20, G:0.32, T:0.30
Consensus pattern (41 bp):
GGGCATGTCTAATGCCGTGTGGGCACATGGCCTATTCATAC
Found at i:51150050 original size:41 final size:41
Alignment explanation
Indices: 51149972--51150052 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
51149962 AGGGCATGTC
** * *
51149972 TAATGCCGTGTGGGCACATGGTTTATTCATACGGGCGTGTT
1 TAATGCCGTGTGGGCACATGGCCTATTCACACAGGCGTGTT
*
51150013 TAATGCCGTGTGGGCACATGGCCTATTCACCCAGGCGTGT
1 TAATGCCGTGTGGGCACATGGCCTATTCACACAGGCGTGT
51150053 GACCTTTGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.17, C:0.22, G:0.31, T:0.30
Consensus pattern (41 bp):
TAATGCCGTGTGGGCACATGGCCTATTCACACAGGCGTGTT
Found at i:51156079 original size:2 final size:2
Alignment explanation
Indices: 51156023--51156062 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
51156013 ATACAAAGGA
*
51156023 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51156063 GAATAACAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51156295 original size:2 final size:2
Alignment explanation
Indices: 51156288--51156320 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
51156278 TAAATAAACA
51156288 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
51156321 AATGAAAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51157136 original size:16 final size:16
Alignment explanation
Indices: 51157115--51157149 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
51157105 TATAAAAATC
51157115 AAAATCAAAATAAAAG
1 AAAATCAAAATAAAAG
*
51157131 AAAATCAGAATAAAAG
1 AAAATCAAAATAAAAG
51157147 AAA
1 AAA
51157150 CTAGATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.74, C:0.06, G:0.09, T:0.11
Consensus pattern (16 bp):
AAAATCAAAATAAAAG
Found at i:51157570 original size:22 final size:22
Alignment explanation
Indices: 51157545--51157601 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 22
51157535 TAGGTCTTAA
51157545 GTTGGGTCTGGATTTATTTGTT
1 GTTGGGTCTGGATTTATTTGTT
51157567 GTTGGGTCTGGATTTATTTGTT
1 GTTGGGTCTGGATTTATTTGTT
51157589 GTTGGGTCATGGA
1 GTTGGGTC-TGGA
51157602 CTGTTTTTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 30 0.88
23 4 0.12
ACGTcount: A:0.11, C:0.05, G:0.35, T:0.49
Consensus pattern (22 bp):
GTTGGGTCTGGATTTATTTGTT
Found at i:51159998 original size:34 final size:38
Alignment explanation
Indices: 51159915--51160001 Score: 103
Period size: 37 Copynumber: 2.4 Consensus size: 38
51159905 CGAGTTCAAA
*
51159915 ATTATAAAA-AATAAAAATCATAAAATATTAATAAATT
1 ATTATAAAATTATAAAAATCATAAAATATTAATAAATT
* * *
51159952 ATTTTAAAATTATAAAAATGA-AAATTATTAAT-AA-T
1 ATTATAAAATTATAAAAATCATAAAATATTAATAAATT
51159987 -TTATAAAATTATAAA
1 ATTATAAAATTATAAA
51160002 TTAATAAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
34 14 0.32
35 1 0.02
36 2 0.05
37 18 0.41
38 9 0.20
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (38 bp):
ATTATAAAATTATAAAAATCATAAAATATTAATAAATT
Found at i:51160128 original size:17 final size:17
Alignment explanation
Indices: 51160106--51160179 Score: 62
Period size: 18 Copynumber: 4.4 Consensus size: 17
51160096 AGTGCAAAAC
51160106 TATAAAAATTTATAAAT
1 TATAAAAATTTATAAAT
*** *
51160123 TATAAAAAAACAATAATT
1 TAT-AAAAATTTATAAAT
* *
51160141 TA-AAAAATATATACA-
1 TATAAAAATTTATAAAT
51160156 TATAAAAATCTTATAAAT
1 TATAAAAAT-TTATAAAT
51160174 TATAAA
1 TATAAA
51160180 CTCATTTCAC
Statistics
Matches: 42, Mismatches: 11, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
15 2 0.05
16 14 0.33
17 8 0.19
18 18 0.43
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (17 bp):
TATAAAAATTTATAAAT
Found at i:51160322 original size:20 final size:21
Alignment explanation
Indices: 51160297--51160345 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
51160287 TTATTTTTTA
*
51160297 AATTTTTTGTGTC-ATATTTG
1 AATTTTTTATGTCAATATTTG
*
51160317 AATTTTTTATGTCAATATTTT
1 AATTTTTTATGTCAATATTTG
*
51160338 TATTTTTT
1 AATTTTTT
51160346 TTAAAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.22, C:0.04, G:0.08, T:0.65
Consensus pattern (21 bp):
AATTTTTTATGTCAATATTTG
Found at i:51160345 original size:21 final size:20
Alignment explanation
Indices: 51160297--51160336 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
51160287 TTATTTTTTA
*
51160297 AATTTTTTGTGTCATATTTG
1 AATTTTTTATGTCATATTTG
51160317 AATTTTTTATGTCAATATTT
1 AATTTTTTATGTC-ATATTT
51160337 TTATTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (20 bp):
AATTTTTTATGTCATATTTG
Found at i:51161422 original size:4 final size:4
Alignment explanation
Indices: 51161413--51161439 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
51161403 TTAGATTTCA
51161413 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
51161440 ATCTGACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:51165546 original size:21 final size:21
Alignment explanation
Indices: 51165520--51165561 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
51165510 AGGAAAAGTG
51165520 ATTAATTTTGGAAAATACTTT
1 ATTAATTTTGGAAAATACTTT
51165541 ATTAATTTTGGAAAATACTTT
1 ATTAATTTTGGAAAATACTTT
51165562 CATTGCGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.48
Consensus pattern (21 bp):
ATTAATTTTGGAAAATACTTT
Found at i:51178103 original size:26 final size:26
Alignment explanation
Indices: 51178074--51178177 Score: 181
Period size: 26 Copynumber: 4.0 Consensus size: 26
51178064 ATGCCCATCG
*
51178074 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
51178100 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
51178126 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
51178152 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
51178178 ATTCGTACCA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:51183613 original size:25 final size:27
Alignment explanation
Indices: 51183576--51183628 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
51183566 TCAAACATGC
51183576 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
51183602 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
51183628 A
1 A
51183629 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:51185145 original size:26 final size:26
Alignment explanation
Indices: 51185116--51185271 Score: 222
Period size: 26 Copynumber: 6.0 Consensus size: 26
51185106 ATGCCCATCG
*
51185116 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
*
51185142 TGGAACATTTATCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
51185168 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
*
51185194 TGGAACATTTACCTAACCCATTATCG
1 TGGAACATTTACCTAACCCATTATCA
** * * *
51185220 TTTAATATTTAGCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
51185246 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
51185272 ATTTGTACCA
Statistics
Matches: 111, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 111 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:51185189 original size:52 final size:52
Alignment explanation
Indices: 51185116--51185271 Score: 249
Period size: 52 Copynumber: 3.0 Consensus size: 52
51185106 ATGCCCATCG
* * *
51185116 TGGAACATTTACCTAAACCATTATCATGGAACATTTATCTAACCCATTATCA
1 TGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCA
*
51185168 TGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCG
1 TGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCA
** *
51185220 TTTAATATTTAGCTAATCCATTATCATGGAACATTTACCTAACCCATTATCA
1 TGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCA
51185272 ATTTGTACCA
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 96 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (52 bp):
TGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCA
Found at i:51187474 original size:44 final size:45
Alignment explanation
Indices: 51187411--51187761 Score: 202
Period size: 46 Copynumber: 7.8 Consensus size: 45
51187401 TTGGCTTGAA
* *
51187411 GGAAATGATTAAGACCATAGTTGAAAAACACTATA-CACTATACC
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATAGCACTATACC
* *
51187455 GGAAATAAATAAGACCATAGGTGAAAGACACTATAGCACTATACC
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATAGCACTATACC
* * * *
51187500 GGAAAATGAATAAAACCATAGTTGAAGGACACTATGGCAAC-ATAAC
1 GG-AAATGAATAAGACCATAGTTGAAAGACACTATAGC-ACTATACC
* * * * * *
51187546 AGAAACGAGTAAGACCATAGCTAAAAGACATTAT-G-AC-ATTA-C
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATAGCACTA-TACC
* * * * * * * * *
51187588 GATTCAAACGAGTAAGACTATAGCTAAAAGACGCTATGACGTCACGAT-TC
1 G---GAAATGAATAAGACCATAGTTGAAAGACACTAT-A-G-CACTATACC
* ** * *
51187638 --AGATGTGTAAGACCATAGTTGAAAGATACTATGGCAAC-ATGA-C
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATAGC-ACTAT-ACC
* * * ** *
51187681 GTGAAATGAATAAGACCATGGTTGAAAGACACTATGGGAAGATGACG
1 G-GAAATGAATAAGACCATAGTTGAAAGACACTATAGCACTAT-ACC
51187728 GGAAATGAATAAGACCATAGTTGAAAGACACTAT
1 GGAAATGAATAAGACCATAGTTGAAAGACACTAT
51187762 GGCATCATGC
Statistics
Matches: 244, Mismatches: 41, Indels: 42
0.75 0.13 0.13
Matches are distributed among these distances:
42 7 0.03
43 6 0.02
44 32 0.13
45 90 0.37
46 100 0.41
47 3 0.01
48 1 0.00
50 4 0.02
51 1 0.00
ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20
Consensus pattern (45 bp):
GGAAATGAATAAGACCATAGTTGAAAGACACTATAGCACTATACC
Done.