Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 169 of 425
Found at i:51187531 original size:46 final size:44
Alignment explanation
Indices: 51187411--51187534 Score: 176
Period size: 44 Copynumber: 2.8 Consensus size: 44
51187401 TTGGCTTGAA
* *
51187411 GGAAATGATTAAGACCATAGTTGAAAAACACTATACACTATACC
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATACACTATACC
* *
51187455 GGAAATAAATAAGACCATAGGTGAAAGACACTATAGCACTATACC
1 GGAAATGAATAAGACCATAGTTGAAAGACACTATA-CACTATACC
* *
51187500 GGAAAATGAATAAAACCATAGTTGAAGGACACTAT
1 GG-AAATGAATAAGACCATAGTTGAAAGACACTAT
51187535 GGCAACATAA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
44 31 0.44
45 11 0.16
46 28 0.40
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (44 bp):
GGAAATGAATAAGACCATAGTTGAAAGACACTATACACTATACC
Found at i:51187705 original size:46 final size:46
Alignment explanation
Indices: 51187412--51187788 Score: 231
Period size: 45 Copynumber: 8.3 Consensus size: 46
51187402 TGGCTTGAAG
* * *
51187412 GAAATGATTAAGACCATAGTTGAAAAACACTAT-AC-ACTAT-ACCG-
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGGCAAC-ATGA-CGT
* * *
51187456 GAAATAAATAAGACCATAGGTGAAAGACACTATAGC-ACTAT-ACCG-
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGGCAAC-ATGA-CGT
* * * *
51187501 GAAAATGAATAAAACCATAGTTGAAGGACACTATGGCAACATAAC-A
1 G-AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACGT
* * * * * *
51187547 GAAACGAGTAAGACCATAGCTAAAAGACATTAT-G--ACATTACGATT
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACG--T
* * * * * * * * ** * *
51187592 CAAACGAGTAAGACTATAGCTAAAAGACGCTATGACGTCACGA-TT
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACGT
* * ** *
51187637 CAGATGTGTAAGACCATAGTTGAAAGATACTATGGCAACATGACGT
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACGT
* * * *
51187683 GAAATGAATAAGACCATGGTTGAAAGACACTATGGGAAGATGACGG
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACGT
* *
51187729 GAAATGAATAAGACCATAGTTGAAAGACACTATGGCATCATG-CCT
1 GAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACGT
* *
51187774 AAAATAAATAAGACC
1 GAAATGAATAAGACC
51187789 GTGGATGGGA
Statistics
Matches: 263, Mismatches: 58, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
42 6 0.02
44 30 0.11
45 111 0.42
46 110 0.42
47 3 0.01
48 3 0.01
ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20
Consensus pattern (46 bp):
GAAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACGT
Found at i:51192295 original size:44 final size:44
Alignment explanation
Indices: 51192247--51192674 Score: 146
Period size: 44 Copynumber: 9.7 Consensus size: 44
51192237 ATAAAATCCA
* *
51192247 CATCTTCAGTCTGCTTCCTTACTACCTTAGGAAGATAAGACTAC
1 CATCTTCAGTCTGCTCCCTTACTACCTCAGGAAGATAAGACTAC
* * * ** * *
51192291 CATCTTTAGCCTGCCCCCTCGCTACCTCAAGG-AGATAAGGCTAG
1 CATCTTCAGTCTGCTCCCTTACTACCTC-AGGAAGATAAGACTAC
*** ** * * * *
51192335 TGGCTAAAATCTGCTCCCTTGCTACCTCGGGAAGATAAGA-TTC
1 CATCTTCAGTCTGCTCCCTTACTACCTCAGGAAGATAAGACTAC
* * * *
51192378 GTCATCTT-TGATCTGCTCCAC-TACTA-CTTAGGGAGATAAAATCTAC
1 --CATCTTCAG-TCTGCTCC-CTTACTACCTCAGGAAGATAAGA-CTAC
* * * * *
51192424 AATCTTTAGTTTGCTTCCTTACTACCTCAGGAAGATAAGGCTAC
1 CATCTTCAGTCTGCTCCCTTACTACCTCAGGAAGATAAGACTAC
* * * *
51192468 AATCTTCAGCCTGCTCCCTTGCTACCTCA--AAGAGTTAAGGCT--
1 CATCTTCAGTCTGCTCCCTTACTACCTCAGGAAGA--TAAGACTAC
* ** * * * *
51192510 CGTGGCTAAAATCTGCTCCCCTGCTACCTC-GAGAAGATAAGATTCAC
1 CAT--CTTCAGTCTGCTCCCTTACTACCTCAG-GAAGATAAGACT-AC
* * * * * *
51192557 CATATT-TGATCTACTCCAC-TAGTATCTCAAGG-AGATAAGATCTAT
1 CATCTTCAG-TCTGCTCC-CTTACTACCTC-AGGAAGATAAGA-CTAC
* * * *
51192602 AATCTTCAGTCTACTCTCTTGCTACCTCAGGAAGATAAGACTA-
1 CATCTTCAGTCTGCTCCCTTACTACCTCAGGAAGATAAGACTAC
* * *
51192645 CACTCTTTAGCCTGCTCCCTTGCTACCTCA
1 CA-TCTTCAGTCTGCTCCCTTACTACCTCA
51192675 AAGAGATAAG
Statistics
Matches: 275, Mismatches: 79, Indels: 60
0.66 0.19 0.14
Matches are distributed among these distances:
42 5 0.02
43 5 0.02
44 174 0.63
45 77 0.28
46 11 0.04
47 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (44 bp):
CATCTTCAGTCTGCTCCCTTACTACCTCAGGAAGATAAGACTAC
Found at i:51192554 original size:177 final size:177
Alignment explanation
Indices: 51192215--51192755 Score: 726
Period size: 177 Copynumber: 3.0 Consensus size: 177
51192205 TCTTCAGTCC
* * * *
51192215 ACTCTACTGCTACATTAGGGAGATAAAATCCAC-ATCTTCAGTCTGCTTCCTTACTACCTTAGGA
1 ACTCCACTACTAC-TTAGGGAGATAAAATCTACAATCTTCAGTCTGCTTCCTTACTACCTCAGGA
* * * *
51192279 AGATAAGACTACCATCTTTAGCCTGCCCCCTCGCTACCTCAAGGAGATAAGGCTAGTGGCTAAAA
65 AGATAAGACTACAATCTTTAGCCTGCTCCCTTGCTACCTCAAAGAGATAAGGCTAGTGGCTAAAA
* * *
51192344 TCTGCTCCCTTGCTACCTCGGGAAGATAAGATTCGTCATCTTTGATCT
130 TCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCATCATCTTTGATCT
* * *
51192392 GCTCCACTACTACTTAGGGAGATAAAATCTACAATCTTTAGTTTGCTTCCTTACTACCTCAGGAA
1 ACTCCACTACTACTTAGGGAGATAAAATCTACAATCTTCAGTCTGCTTCCTTACTACCTCAGGAA
* * * *
51192457 GATAAGGCTACAATCTTCAGCCTGCTCCCTTGCTACCTCAAAGAGTTAAGGCTCGTGGCTAAAAT
66 GATAAGACTACAATCTTTAGCCTGCTCCCTTGCTACCTCAAAGAGATAAGGCTAGTGGCTAAAAT
* *
51192522 CTGCTCCCCTGCTACCTCGAGAAGATAAGATTCACCATATTTGATCT
131 CTGCTCCCCTGCTACCTCGAGAAGATAAGATTCATCATCTTTGATCT
* * * * * * *
51192569 ACTCCACTAGTATCTCAAGGAGATAAGATCTATAATCTTCAGTCTAC-TCTCTTGCTACCTCAGG
1 ACTCCACTACTA-CTTAGGGAGATAAAATCTACAATCTTCAGTCTGCTTC-CTTACTACCTCAGG
* *
51192633 AAGATAAGACTACACTCTTTAGCCTGCTCCCTTGCTACCTCAAAGAGATAAGGCTGGTGGCTAAA
64 AAGATAAGACTACAATCTTTAGCCTGCTCCCTTGCTACCTCAAAGAGATAAGGCTAGTGGCT-AA
* * ***
51192698 AATCTGCTCCCCTGCTACCTTGCGAAGATAAGATTCATCATCTGCAATCT
128 AATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCATCATCTTTGATCT
51192748 ACTCCACT
1 ACTCCACT
51192756 GCTATTTCAG
Statistics
Matches: 318, Mismatches: 42, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
176 18 0.06
177 150 0.47
178 97 0.31
179 53 0.17
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (177 bp):
ACTCCACTACTACTTAGGGAGATAAAATCTACAATCTTCAGTCTGCTTCCTTACTACCTCAGGAA
GATAAGACTACAATCTTTAGCCTGCTCCCTTGCTACCTCAAAGAGATAAGGCTAGTGGCTAAAAT
CTGCTCCCCTGCTACCTCGAGAAGATAAGATTCATCATCTTTGATCT
Found at i:51195545 original size:49 final size:49
Alignment explanation
Indices: 51195476--51196387 Score: 1213
Period size: 49 Copynumber: 18.1 Consensus size: 49
51195466 GTACATAATA
51195476 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
51195525 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
51195574 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
51195623 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* ***
51195672 ACATATGTGATAAGGCCTAATGGCCGATGTGATAAGGCCTAATG-GCCGATGTGAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGAT---G---AATGTGAAAATGT-AT
* * * * *
51195727 GA-ATGTGAAAATGTATACATATGTG-ATAA-GGCCTAATG-GCTGATGTGATGAATGTGAAAAT
1 -ATATATG----TG-AT--A-A-G-GCCTAATGGCC-GATGTGATGA-ATG-------TGAAAAT
51195788 GTAT
46 GTAT
*
51195792 ATATATGTGATAAGGCCTAATGGCCGAGGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
51195841 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
51195890 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
51195939 ACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
51195988 ACATATGTGATAAGGCCTAATGGCCGAGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCC--GATGTGATGAATGTGAAAATGTAT
* * *
51196039 ATATGTGTGATAAGGCCTAATGGCCGACGTAATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
** * * *
51196088 ACGTATGTGATAAGGCCTAATGGCCAATCTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* * *
51196137 ACATATGTGATAAGGCCTAATGGCCGATCTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
51196186 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
51196235 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
51196284 AGATAAGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* * *
51196333 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATATGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
51196382 ATATAT
1 ATATAT
51196388 ATGTGGTAAA
Statistics
Matches: 779, Mismatches: 50, Indels: 68
0.87 0.06 0.08
Matches are distributed among these distances:
49 656 0.84
51 47 0.06
52 1 0.00
54 5 0.01
55 11 0.01
56 9 0.01
57 10 0.01
58 3 0.00
59 2 0.00
60 5 0.01
61 2 0.00
62 1 0.00
63 7 0.01
64 8 0.01
65 7 0.01
66 5 0.01
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:51195701 original size:22 final size:22
Alignment explanation
Indices: 51195676--51195726 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
51195666 ATGTATACAT
51195676 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
51195698 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
51195720 ATGTGAT
1 ATGTGAT
51195727 GAATGTGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:51195704 original size:71 final size:71
Alignment explanation
Indices: 51195627--51195775 Score: 280
Period size: 71 Copynumber: 2.1 Consensus size: 71
51195617 ATGTATATAT
51195627 ATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
51195692 TGGCCG
66 TGGCCG
*
51195698 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
*
51195763 TGGCTG
66 TGGCCG
51195769 ATGTGAT
1 ATGTGAT
51195776 GAATGTGAAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 76 1.00
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (71 bp):
ATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
TGGCCG
Found at i:51195722 original size:120 final size:120
Alignment explanation
Indices: 51195578--51195824 Score: 449
Period size: 120 Copynumber: 2.1 Consensus size: 120
51195568 ATGTATACAT
*
51195578 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
51195643 TGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCG
66 TGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCG
51195698 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
* * *
51195763 TGGCTGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCG
66 TGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCG
*
51195818 AGGTGAT
1 ATGTGAT
51195825 GAATGTGAAA
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 122 1.00
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (120 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
TGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCG
Found at i:51195808 original size:169 final size:169
Alignment explanation
Indices: 51195529--51195873 Score: 663
Period size: 169 Copynumber: 2.0 Consensus size: 169
51195519 ATGTATATAT
51195529 ATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
51195594 TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
66 TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
51195659 TGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCG
131 TGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCG
*
51195698 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
* *
51195763 TGGCTGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGAGGTGATGAA
66 TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
51195828 TGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCG
131 TGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCG
51195867 ATGTGAT
1 ATGTGAT
51195874 GAATGTGAAA
Statistics
Matches: 173, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
169 173 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.28
Consensus pattern (169 bp):
ATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
TGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCG
Found at i:51195858 original size:218 final size:218
Alignment explanation
Indices: 51195480--51195922 Score: 823
Period size: 218 Copynumber: 2.0 Consensus size: 218
51195470 ATAATAATAT
*
51195480 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
*
51195545 TGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 TGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGAGGTGATGAA
*
51195610 TGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACA
131 TGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACA
51195675 TATGTGATAAGGCCTAATGGCCG
196 TATGTGATAAGGCCTAATGGCCG
51195698 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
1 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
* * *
51195763 TGGCTGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGAGGTGATGAA
66 TGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGAGGTGATGAA
*
51195828 TGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATACA
131 TGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACA
51195893 TATGTGATAAGGCCTAATGGCCG
196 TATGTGATAAGGCCTAATGGCCG
51195916 ATGTGAT
1 ATGTGAT
51195923 GAATGTGAAA
Statistics
Matches: 218, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
218 218 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.28
Consensus pattern (218 bp):
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAA
TGGCCGACGTGATGAATGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGAGGTGATGAA
TGTGAAAATGTATACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTATACA
TATGTGATAAGGCCTAATGGCCG
Found at i:51195897 original size:27 final size:27
Alignment explanation
Indices: 51195867--51195998 Score: 72
Period size: 27 Copynumber: 5.3 Consensus size: 27
51195857 CTAATGGCCG
51195867 ATGTGATGAATGTGAAAATGTATACAT
1 ATGTGATGAATGTGAAAATGTATACAT
** * **
51195894 ATGTGAT-AA-G-GCCTAATG---GCCG
1 ATGTGATGAATGTG-AAAATGTATACAT
51195916 ATGTGATGAATGTGAAAATGTATACAT
1 ATGTGATGAATGTGAAAATGTATACAT
** * **
51195943 ATGTGAT-AA-G-GCCTAATG---GCCG
1 ATGTGATGAATGTG-AAAATGTATACAT
51195965 ATGTGATGAATGTGAAAATGTATACAT
1 ATGTGATGAATGTGAAAATGTATACAT
51195992 ATGTGAT
1 ATGTGAT
51195999 AAGGCCTAAT
Statistics
Matches: 71, Mismatches: 20, Indels: 28
0.60 0.17 0.24
Matches are distributed among these distances:
22 16 0.23
23 4 0.06
24 12 0.17
25 12 0.17
26 4 0.06
27 23 0.32
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAATGTATACAT
Found at i:51223645 original size:22 final size:22
Alignment explanation
Indices: 51223617--51223661 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
51223607 TAGTGTCTCA
51223617 TTCAATTGTTCCAATTATGTTC
1 TTCAATTGTTCCAATTATGTTC
51223639 TTCAATTGTTCCAATTATGTTC
1 TTCAATTGTTCCAATTATGTTC
51223661 T
1 T
51223662 AATAGTGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.18, G:0.09, T:0.51
Consensus pattern (22 bp):
TTCAATTGTTCCAATTATGTTC
Found at i:51231692 original size:11 final size:11
Alignment explanation
Indices: 51231676--51231704 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
51231666 TGAGGTTAAA
51231676 TAAATTTAACC
1 TAAATTTAACC
51231687 TAAATTTAACC
1 TAAATTTAACC
51231698 TAAATTT
1 TAAATTT
51231705 CGACAGAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (11 bp):
TAAATTTAACC
Found at i:51235247 original size:46 final size:46
Alignment explanation
Indices: 51235175--51235273 Score: 112
Period size: 46 Copynumber: 2.2 Consensus size: 46
51235165 GAGTGCTAGC
* *
51235175 GTAAGACATGTCCGGGACATGTATCGGCCT-CGAGA-CATAAGGCAGT
1 GTAAGACATGTCCAGGACATGCATCGG-CTACGAGATCAT-AGGCAGT
* * * *
51235221 GTAAGACATGTCTAGGATATGCATCGGCTACGAGATGATAGTCAGT
1 GTAAGACATGTCCAGGACATGCATCGGCTACGAGATCATAGGCAGT
51235267 GTAAGAC
1 GTAAGAC
51235274 CATATTTGAG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
45 2 0.04
46 41 0.91
47 2 0.04
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.22
Consensus pattern (46 bp):
GTAAGACATGTCCAGGACATGCATCGGCTACGAGATCATAGGCAGT
Found at i:51236452 original size:21 final size:22
Alignment explanation
Indices: 51236412--51236453 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
51236402 GCCAAATTGG
51236412 TCACACGGACATGTTGCCCCTC
1 TCACACGGACATGTTGCCCCTC
*
51236434 TCACACGGGCATG-TGCCCCT
1 TCACACGGACATGTTGCCCCT
51236454 GTGTCAAGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.17, C:0.40, G:0.21, T:0.21
Consensus pattern (22 bp):
TCACACGGACATGTTGCCCCTC
Found at i:51239453 original size:24 final size:25
Alignment explanation
Indices: 51239407--51239455 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
51239397 TGGCTATCTA
*
51239407 GAGCTTCCCGTTACATGGCTCTTTGT
1 GAGCTTCCCGGTA-ATGGCTCTTTGT
*
51239433 GAGCTTCCCGGT-ATGGTTCTTTG
1 GAGCTTCCCGGTAATGGCTCTTTG
51239456 AGAACTTCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
26 11 0.52
ACGTcount: A:0.10, C:0.24, G:0.27, T:0.39
Consensus pattern (25 bp):
GAGCTTCCCGGTAATGGCTCTTTGT
Found at i:51243146 original size:29 final size:29
Alignment explanation
Indices: 51243114--51243342 Score: 160
Period size: 29 Copynumber: 7.9 Consensus size: 29
51243104 GGCTATCGAT
51243114 TATGAAAAGGGATGGTGACGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
*
51243143 TATGAAAAGGGATGGTGATGACCATCGAA-
1 TATGAAAAGGGATGGTGACGACCATC-AAC
* * * * * *
51243172 TATGAAAAGAGATAGCT-TCGGCTATCGAC
1 TATGAAAAGGGAT-GGTGACGACCATCAAC
* * ** * *
51243201 TATGAACAGGGATAGTTTC-AGCTATCGA-
1 TATGAAAAGGGATGGTGACGA-CCATCAAC
51243229 TCATGAAAAGGGATGGTGACGACCATCAAC
1 T-ATGAAAAGGGATGGTGACGACCATCAAC
* ***
51243259 TATGAAAAGGGATGGTGACAACCATCGGT
1 TATGAAAAGGGATGGTGACGACCATCAAC
* *** * *
51243288 TAATGAAGAGGGATGGTTTTGACCACCAAA
1 T-ATGAAAAGGGATGGTGACGACCATCAAC
* *
51243318 TATGAAAAGGGATGATTACGACCAT
1 TATGAAAAGGGATGGTGACGACCAT
51243343 TGTTTAGCAC
Statistics
Matches: 154, Mismatches: 37, Indels: 18
0.74 0.18 0.09
Matches are distributed among these distances:
28 3 0.02
29 125 0.81
30 26 0.17
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGACGACCATCAAC
Found at i:51243170 original size:58 final size:58
Alignment explanation
Indices: 51243108--51243331 Score: 209
Period size: 58 Copynumber: 3.8 Consensus size: 58
51243098 AACTTTGGCT
*
51243108 ATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGATGACC
1 ATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGATAACC
* * * * * * * * * * * *
51243166 ATCGAATATGAAAAGAGATAGCT-TCGGCTATCGACTATGAACAGGGATAGT-TTCAGCT
1 ATCGATTATGAAAAGGGAT-GGTGACGACCATCAACTATGAAAAGGGATGGTGAT-AACC
* *
51243224 ATCGATCATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACAACC
1 ATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGATAACC
* * *** * *
51243282 ATCGGTTAATGAAGAGGGATGGTTTTGACCACCAAATATGAAAAGGGATG
1 ATCGATT-ATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATG
51243332 ATTACGACCA
Statistics
Matches: 126, Mismatches: 35, Indels: 9
0.74 0.21 0.05
Matches are distributed among these distances:
57 3 0.02
58 85 0.67
59 38 0.30
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (58 bp):
ATCGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGATAACC
Found at i:51243197 original size:87 final size:87
Alignment explanation
Indices: 51243086--51243267 Score: 217
Period size: 87 Copynumber: 2.1 Consensus size: 87
51243076 TCATTGATTA
* * * *
51243086 ATGAAAAGGGATAACTTTGGCTATCGATTATGAAAAGGGATGGTGAC-GACCATCAA-CTATGAA
1 ATGAAAAGAGATAACTTCGGCTATCGACTATGAAAAGGGATAGTGACAG-CCATCAATC-ATGAA
*
51243149 AAGGGATGGTGATGACCATCGAA-T
64 AAGGGATGGTGACGACCATC-AACT
* * ** * *
51243173 ATGAAAAGAGATAGCTTCGGCTATCGACTATGAACAGGGATAGTTTCAGCTATCGATCATGAAAA
1 ATGAAAAGAGATAACTTCGGCTATCGACTATGAAAAGGGATAGTGACAGCCATCAATCATGAAAA
51243238 GGGATGGTGACGACCATCAACT
66 GGGATGGTGACGACCATCAACT
51243260 ATGAAAAG
1 ATGAAAAG
51243268 GGATGGTGAC
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
86 2 0.02
87 77 0.95
88 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (87 bp):
ATGAAAAGAGATAACTTCGGCTATCGACTATGAAAAGGGATAGTGACAGCCATCAATCATGAAAA
GGGATGGTGACGACCATCAACT
Found at i:51243342 original size:59 final size:59
Alignment explanation
Indices: 51243231--51243342 Score: 143
Period size: 59 Copynumber: 1.9 Consensus size: 59
51243221 GCTATCGATC
* * *
51243231 ATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACAACCATCGGTTA
1 ATGAAAAGGGATGGTGACGACCACCAAATATGAAAAGGGATGATGACAACCATCGGTTA
* *** * *
51243290 ATGAAGAGGGATGGTTTTGACCACCAAATATGAAAAGGGATGATTACGACCAT
1 ATGAAAAGGGATGGTGACGACCACCAAATATGAAAAGGGATGATGACAACCAT
51243343 TGTTTAGCAC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
59 44 1.00
ACGTcount: A:0.38, C:0.14, G:0.28, T:0.21
Consensus pattern (59 bp):
ATGAAAAGGGATGGTGACGACCACCAAATATGAAAAGGGATGATGACAACCATCGGTTA
Found at i:51245850 original size:20 final size:20
Alignment explanation
Indices: 51245825--51245863 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51245815 AGGGACTAAA
*
51245825 ATGAAAAGTTATAAAATTTG
1 ATGAAAAATTATAAAATTTG
*
51245845 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTATAAAATTT
51245864 TATGGATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:51251505 original size:27 final size:29
Alignment explanation
Indices: 51251475--51251589 Score: 90
Period size: 29 Copynumber: 4.0 Consensus size: 29
51251465 ACGCAAGAGC
*
51251475 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
51251502 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* ** *
51251531 ATATAATTTTCAGCTCGCATACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* * ** *
51251561 ATATGTTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
51251590 GTACAATTTT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
27 5 0.06
28 3 0.04
29 41 0.53
30 28 0.36
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:51251542 original size:30 final size:29
Alignment explanation
Indices: 51251487--51251589 Score: 170
Period size: 29 Copynumber: 3.5 Consensus size: 29
51251477 ATAGTGAATC
51251487 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
51251516 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
* * *
51251546 CGCATACTTAGTGCTATATGTTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
51251575 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51251590 GTACAATTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
29 41 0.59
30 28 0.41
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:51251564 original size:59 final size:59
Alignment explanation
Indices: 51251487--51251619 Score: 185
Period size: 59 Copynumber: 2.2 Consensus size: 59
51251477 ATAGTGAATC
*
51251487 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTCAGCT
* * * * * * *
51251546 CGCATACTTAGTGCTATATGTTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAACC
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAA-TTTTCAGCT
51251606 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51251620 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
59 45 0.70
60 19 0.30
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTCAGCT
Found at i:51252960 original size:18 final size:20
Alignment explanation
Indices: 51252925--51252963 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
51252915 TCCACACCCA
51252925 TTTTTTTTCATCATTTTCTTT
1 TTTTTTTTCA-CATTTTCTTT
51252946 TTTTTTTTC-CA-TTTCTTT
1 TTTTTTTTCACATTTTCTTT
51252964 ATTCTCCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 2 0.11
21 9 0.50
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTTTTCACATTTTCTTT
Found at i:51256068 original size:18 final size:18
Alignment explanation
Indices: 51256037--51256071 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51256027 ATTTAGTCGA
* *
51256037 TTTCTTCTTTCCCTTAGC
1 TTTCTACTTCCCCTTAGC
51256055 TTTCTACTTCCCCTTAG
1 TTTCTACTTCCCCTTAG
51256072 AGGATAAGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.34, G:0.06, T:0.51
Consensus pattern (18 bp):
TTTCTACTTCCCCTTAGC
Found at i:51260682 original size:15 final size:15
Alignment explanation
Indices: 51260664--51260703 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
51260654 TCCAAGGTTG
*
51260664 AGAAACCCAGAATAA
1 AGAAACCCAAAATAA
*
51260679 AGAAATCCAAAATAA
1 AGAAACCCAAAATAA
51260694 AGAAACCCAA
1 AGAAACCCAA
51260704 GATACGATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.62, C:0.20, G:0.10, T:0.07
Consensus pattern (15 bp):
AGAAACCCAAAATAA
Found at i:51260698 original size:30 final size:30
Alignment explanation
Indices: 51260634--51260702 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
51260624 TAATGATAAC
* ** *
51260634 AAGAAAACC-GAATAAAGAAATCCAAGGTT
1 AAGAAACCCAGAATAAAGAAATCCAAAATA
*
51260663 GAGAAACCCAGAATAAAGAAATCCAAAATA
1 AAGAAACCCAGAATAAAGAAATCCAAAATA
51260693 AAGAAACCCA
1 AAGAAACCCA
51260703 AGATACGATA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.58, C:0.17, G:0.14, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAAATA
Found at i:51270833 original size:27 final size:29
Alignment explanation
Indices: 51270803--51270917 Score: 90
Period size: 29 Copynumber: 4.0 Consensus size: 29
51270793 ACGCAAGAGC
*
51270803 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
51270830 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* ** *
51270859 ATATAATTTTCAGCTCGCATACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* * ** *
51270889 ATATGTTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
51270918 GTACAATTTT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
27 5 0.06
28 3 0.04
29 41 0.53
30 28 0.36
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:51270870 original size:30 final size:29
Alignment explanation
Indices: 51270815--51270917 Score: 170
Period size: 29 Copynumber: 3.5 Consensus size: 29
51270805 ATAGTGAATC
51270815 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
51270844 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
* * *
51270874 CGCATACTTAGTGCTATATGTTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
51270903 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51270918 GTACAATTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
29 41 0.59
30 28 0.41
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:51270892 original size:59 final size:59
Alignment explanation
Indices: 51270815--51270947 Score: 185
Period size: 59 Copynumber: 2.2 Consensus size: 59
51270805 ATAGTGAATC
*
51270815 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTCAGCT
* * * * * * *
51270874 CGCATACTTAGTGCTATATGTTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAACC
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAA-TTTTCAGCT
51270934 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51270948 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
59 45 0.70
60 19 0.30
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (59 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTCAGCT
Found at i:51272290 original size:19 final size:21
Alignment explanation
Indices: 51272253--51272293 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
51272243 TCCACACCCA
51272253 TTTTTTTTTCATCATTTTCTTT
1 TTTTTTTTTCA-CATTTTCTTT
51272275 TTTTTTTTTC-CA-TTTCTTT
1 TTTTTTTTTCACATTTTCTTT
51272294 ATTCTCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 2 0.11
22 10 0.53
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTTTTTTCACATTTTCTTT
Found at i:51273094 original size:27 final size:27
Alignment explanation
Indices: 51273064--51273217 Score: 146
Period size: 27 Copynumber: 5.5 Consensus size: 27
51273054 ATAGTGAATC
51273064 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
51273091 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
51273119 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * * *
51273146 CGCACACATAGTGCTATATAATTTGAGAT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* * **
51273175 TGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
51273204 TGCACACTTAGTGC
1 CGCACACTTAGTGC
51273218 CATTCTCATC
Statistics
Matches: 105, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
27 40 0.38
28 27 0.26
29 38 0.36
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:51273135 original size:55 final size:55
Alignment explanation
Indices: 51273064--51273167 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
51273054 ATAGTGAATC
51273064 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
51273119 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
51273168 TTGAGATTGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:51273218 original size:29 final size:28
Alignment explanation
Indices: 51273065--51273220 Score: 111
Period size: 29 Copynumber: 5.6 Consensus size: 28
51273055 TAGTGAATCC
* ** *
51273065 GCACACTTAGTGCTATA-AAATCAGCTC
1 GCACACTTAGTGCCATATATTTCAGCTT
* * * **
51273092 GCACACATAGTGCTATATA-ATCAAATT
1 GCACACTTAGTGCCATATATTTCAGCTT
* ** *
51273119 CGCACACTTAGTGCTATA-AAATCAGCTC
1 -GCACACTTAGTGCCATATATTTCAGCTT
* * * *
51273147 GCACACATAGTGCTATATAATTTGAGATT
1 GCACACTTAGTGCCATAT-ATTTCAGCTT
51273176 GCACACTTAGTGCCATATATTTCCAGCTT
1 GCACACTTAGTGCCATATATTT-CAGCTT
51273205 GCACACTTAGTGCCAT
1 GCACACTTAGTGCCAT
51273221 TCTCATCACC
Statistics
Matches: 105, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
27 38 0.36
28 26 0.25
29 41 0.39
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (28 bp):
GCACACTTAGTGCCATATATTTCAGCTT
Found at i:51273863 original size:2 final size:2
Alignment explanation
Indices: 51273851--51273894 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
51273841 TGATGGTCGA
*
51273851 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51273893 AT
1 AT
51273895 CAACTATGCT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51277344 original size:2 final size:2
Alignment explanation
Indices: 51277337--51277374 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
51277327 GCTCTTGCAC
*
51277337 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51277375 GTTTGCGCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51278188 original size:40 final size:40
Alignment explanation
Indices: 51278083--51278227 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 40
51278073 TACTCGAATG
* * *
51278083 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * * *
51278124 ACATTCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* * *
51278164 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
51278204 ATATCCAGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
51278228 CTTGTGCGAG
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 57 0.67
41 26 0.31
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:51294235 original size:18 final size:18
Alignment explanation
Indices: 51294212--51294248 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
51294202 GATGATATTA
51294212 TTAGGTTACTCTTTTGCT
1 TTAGGTTACTCTTTTGCT
51294230 TTAGGTTACTCTTTTGCT
1 TTAGGTTACTCTTTTGCT
51294248 T
1 T
51294249 ATGACTTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (18 bp):
TTAGGTTACTCTTTTGCT
Found at i:51299696 original size:56 final size:56
Alignment explanation
Indices: 51299554--51299696 Score: 141
Period size: 56 Copynumber: 2.5 Consensus size: 56
51299544 CCACATGTTG
*
51299554 TAAAAAGGATTTAGCCTGGACGAGTAATCCTAATATAAGCCGCTTGAGCCAATGCTA
1 TAAAAAGGATTTAGCCTGGACG-GTAATCCAAATATAAGCCGCTTGAGCCAATGCTA
* ** * * *
51299611 TAGATTGGATTTAGCCCGGACGGGCAATCCAAAT-TAAG-CTCTTAGAG-CATATGTCT-
1 TAAAAAGGATTTAGCCTGGAC-GGTAATCCAAATATAAGCCGCTT-GAGCCA-ATG-CTA
51299667 TAAAAAGGATTTAGCCTGGACTGGTAATCC
1 TAAAAAGGATTTAGCCTGGAC-GGTAATCC
51299697 TATAACATAA
Statistics
Matches: 69, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
55 6 0.09
56 34 0.49
57 28 0.41
58 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (56 bp):
TAAAAAGGATTTAGCCTGGACGGTAATCCAAATATAAGCCGCTTGAGCCAATGCTA
Found at i:51301872 original size:27 final size:27
Alignment explanation
Indices: 51301813--51301872 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
51301803 GCTCAAACAG
* * *
51301813 GGGAATATGATAGTTGTGAGTATGAAT
1 GGGAATATGATAGTTCTGACTATGAAC
*
51301840 GAGAATATGATAGTGTCTGACTAT-AAC
1 GGGAATATGATAGT-TCTGACTATGAAC
51301867 GGGAAT
1 GGGAAT
51301873 TTGTTAGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.35, C:0.05, G:0.30, T:0.30
Consensus pattern (27 bp):
GGGAATATGATAGTTCTGACTATGAAC
Found at i:51302775 original size:30 final size:30
Alignment explanation
Indices: 51302741--51302801 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
51302731 TTCCCGAGCC
51302741 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
51302771 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
51302801 T
1 T
51302802 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:51314848 original size:27 final size:28
Alignment explanation
Indices: 51314818--51314917 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
51314808 ATAGTGAGTC
51314818 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
51314845 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
51314873 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
51314904 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51314918 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:51315766 original size:7 final size:7
Alignment explanation
Indices: 51315756--51315780 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51315746 TCATCACCAC
51315756 AACATCA
1 AACATCA
51315763 AACATCA
1 AACATCA
51315770 AACATCA
1 AACATCA
51315777 AACA
1 AACA
51315781 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:51322704 original size:27 final size:28
Alignment explanation
Indices: 51322674--51322773 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
51322664 ATAGTGAGTC
51322674 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
51322701 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
51322729 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
51322760 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51322774 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:51323627 original size:7 final size:7
Alignment explanation
Indices: 51323617--51323641 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51323607 TCATCACCAC
51323617 AACATCA
1 AACATCA
51323624 AACATCA
1 AACATCA
51323631 AACATCA
1 AACATCA
51323638 AACA
1 AACA
51323642 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:51324674 original size:9 final size:9
Alignment explanation
Indices: 51324660--51324686 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
51324650 CCGTAATGAA
51324660 GCTGAACAT
1 GCTGAACAT
51324669 GCTGAACAT
1 GCTGAACAT
51324678 GCTGAACAT
1 GCTGAACAT
51324687 TTGAGACTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (9 bp):
GCTGAACAT
Found at i:51330727 original size:25 final size:25
Alignment explanation
Indices: 51330699--51330748 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
51330689 CGATCAACAA
51330699 AGCATCATCGTAAATCACAAATTTT
1 AGCATCATCGTAAATCACAAATTTT
51330724 AGCATCATCGTAAATCACAAATTTT
1 AGCATCATCGTAAATCACAAATTTT
51330749 TTACTCGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (25 bp):
AGCATCATCGTAAATCACAAATTTT
Found at i:51339266 original size:2 final size:2
Alignment explanation
Indices: 51339259--51339301 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
51339249 CTTTTATAAG
51339259 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51339301 T
1 T
51339302 GGAATAACTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:51347434 original size:29 final size:30
Alignment explanation
Indices: 51347402--51347461 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
51347392 TTCCCGAGCC
51347402 TAGGGG-AAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
51347431 TAGGGGCAAAATTGTAATTATTCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
51347461 T
1 T
51347462 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:51349731 original size:28 final size:28
Alignment explanation
Indices: 51349668--51349767 Score: 130
Period size: 27 Copynumber: 3.5 Consensus size: 28
51349658 ATAGTGATTC
*
51349668 CGCACACTTAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTGTATAATCAAACT
51349695 CGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTGTATAATCAAACT
* * *
51349723 CGCACACTTAGTGCTGTACCAATTTTAAACC
1 CGCACACTTAGTGCTGTA-TAA--TCAAACT
51349754 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51349768 CAATCTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 2 0.03
31 19 0.29
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTGTATAATCAAACT
Found at i:51350231 original size:14 final size:14
Alignment explanation
Indices: 51350212--51350239 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
51350202 CGGGCATACT
51350212 TATGTATATATATA
1 TATGTATATATATA
51350226 TATGTATATATATA
1 TATGTATATATATA
51350240 CACTTCCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:51351450 original size:68 final size:66
Alignment explanation
Indices: 51351377--51351524 Score: 165
Period size: 67 Copynumber: 2.2 Consensus size: 66
51351367 CATCATGTGT
* * * *
51351377 ACAAGAGAGCTACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC-AG-CA-TA-TATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
51351440 TGTAG
62 TGTAG
* * * *
51351445 ACAAGAGAGCCACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
51351510 AG
65 AG
51351512 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
51351525 GAGATAAATT
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
64 25 0.37
65 2 0.03
66 3 0.04
67 26 0.38
68 12 0.18
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:51351479 original size:64 final size:64
Alignment explanation
Indices: 51351400--51351585 Score: 191
Period size: 67 Copynumber: 2.9 Consensus size: 64
51351390 AAGACATTAT
*
51351400 TATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCCAC-AGGATA
1 TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCCACGA-GATA
* * * * * *
51351464 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCCACGAGA
51351529 TA
63 TA
* * * *
51351531 AAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCC
1 TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCC
51351586 GAACTGTATG
Statistics
Matches: 99, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 26 0.26
66 21 0.21
67 31 0.31
68 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCCACGAGATA
Found at i:51358972 original size:40 final size:39
Alignment explanation
Indices: 51358928--51359057 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 39
51358918 GACTCGTTCA
* *
51358928 AATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCGCACG
1 AATGCCTTCGGGACTAAGCCCGGTT-TAGTAACTCGCACG
* *
51358968 AATGCCTTCGGGACTTAA-CCCGGGTTTAGTAACTTGCACA
1 AATGCCTTCGGGAC-TAAGCCC-GGTTTAGTAACTCGCACG
* *
51359008 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACG
1 AATGCCTTCGGGACTAAGCCCGG-TTTAGTAACTCGCACG
*
51359047 AATTCCTTCGG
1 AATGCCTTCGG
51359058 ATCCTAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
38 4 0.05
39 27 0.35
40 40 0.52
41 6 0.08
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTAAGCCCGGTTTAGTAACTCGCACG
Found at i:51359027 original size:79 final size:81
Alignment explanation
Indices: 51358926--51359106 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 81
51358916 ACGACTCGTT
** * *
51358926 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
51358989 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* * **
51359006 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATTCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
51359070 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
51359086 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
51359107 TGGACATCAT
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 53 0.62
80 30 0.35
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:51366400 original size:44 final size:41
Alignment explanation
Indices: 51366352--51366451 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 41
51366342 AAAATGATTC
**
51366352 CGCACACTTAGTGCCATCTCAACTAGCCAAAACTAAGTTGGTAT
1 CGCACACTTAGTGCCAT-TCAA-TAGCCAAAACT-AGTTGAAAT
* * * *
51366396 CGCACACTTAGTGCC-TTTAATAGCCGAAGCTAGTTTAAAT
1 CGCACACTTAGTGCCATTCAATAGCCAAAACTAGTTGAAAT
51366436 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
51366452 ATGCTTTCAA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
40 21 0.43
41 9 0.18
42 3 0.06
43 1 0.02
44 15 0.31
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (41 bp):
CGCACACTTAGTGCCATTCAATAGCCAAAACTAGTTGAAAT
Found at i:51379146 original size:39 final size:39
Alignment explanation
Indices: 51379053--51379165 Score: 140
Period size: 39 Copynumber: 2.8 Consensus size: 39
51379043 AGAAATTGTG
* *
51379053 ATATCCGGGCTAAG-CCCGAAGGACAATTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGG-C-ATTGTGCAAGTAATT
**
51379093 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAATT
51379133 A-ATCCGGGCTAAGACCCGAAGGCATTTGTGCAA
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAA
51379166 ATCGTGATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
39 32 0.48
40 26 0.39
41 8 0.12
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAATT
Found at i:51387301 original size:40 final size:40
Alignment explanation
Indices: 51387165--51387318 Score: 148
Period size: 40 Copynumber: 3.9 Consensus size: 40
51387155 GTGTGCATGA
* *
51387165 GCAAATTGTGATATCCGGGCTAAGTCCCG-AGGACATTTAT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGG-CATTTGT
* * ** * * *
51387205 GCTAGTAATTATATCCGGGCTAAGACCTGAAGGCATTCGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * *
51387245 GCAAGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGT
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
* * * *
51387285 GCAAATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 GCAAATTGTGATATCCGGGCTAAGACCCGAAGGC
51387319 CTTGGTGCGG
Statistics
Matches: 91, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
40 88 0.97
41 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GCAAATTGTGATATCCGGGCTAAGACCCGAAGGCATTTGT
Found at i:51389963 original size:43 final size:44
Alignment explanation
Indices: 51389886--51390047 Score: 211
Period size: 43 Copynumber: 3.6 Consensus size: 44
51389876 GGGGTAAGGT
* *
51389886 GCCGATGCCATATCCTAGACATAGTCTTACAATGACACATTTCATA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACAATGACACATTTCATA
51389932 GCCGATGCATGTCCCAGACATGTC-TACAATGACACATTTCATA
1 GCCGATGCATGTCCCAGACATGTCTTACAATGACACATTTCATA
* * *
51389975 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCA-A
1 GCCGATGCATGTCCCAGACATGTCTTACAATGAC--ACATTTCATA
*
51390020 GGCCGATGCATGTCACAGACATGTCTTA
1 -GCCGATGCATGTCCCAGACATGTCTTA
51390048 TACTAGCACT
Statistics
Matches: 106, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
43 43 0.41
44 10 0.09
45 13 0.12
46 40 0.38
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACAATGACACATTTCATA
Found at i:51390042 original size:46 final size:45
Alignment explanation
Indices: 51389932--51390145 Score: 200
Period size: 46 Copynumber: 4.7 Consensus size: 45
51389922 ACATTTCATA
* * * *
51389932 GCCGATGCATGTCCCAGACATGTC-TACAATGAC-ACATTTCATA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCA-AG
51389975 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCAAG
* * * * * *
51390021 GCCGATGCATGTCACAGACATGTCTTATACTAGCACTCTTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCAAG
* * ***
51390067 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATATTGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCATCTCAAG
* *
51390115 ACTGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
51390146 AGCTCACTTA
Statistics
Matches: 139, Mismatches: 24, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
43 24 0.17
44 7 0.05
45 1 0.01
46 61 0.44
47 26 0.19
48 20 0.14
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCAAG
Found at i:51390122 original size:94 final size:92
Alignment explanation
Indices: 51389885--51390148 Score: 249
Period size: 94 Copynumber: 2.9 Consensus size: 92
51389875 CGGGGTAAGG
* * * * *
51389885 TGCCGATGCCATATCCTAGACATAGTCTTACAATGAC--ACATTTCATAG-CCGATGCATGTCCC
1 TGCCGATG-CATATCCCAGACAT-GTCTTACACTGGCTTACATATCA-AGACCGATGCATGTCAC
* *
51389947 AGACATGTC-TACAAT-GACAC-ATT-TC-A
63 AGACATGTCTTACACTAG-CACTCTTCTCAA
* * *
51389973 TAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGGCCGATGCATGTCACAG
1 T-GCCGATGCATATCCCAGACATGTCTTACACTGGCTTACATATCAAGACCGATGCATGTCACAG
*
51390038 ACATGTCTTATACTAGCACTCTTCTCAA
65 ACATGTCTTACACTAGCACTCTTCTCAA
*** * *
51390066 TGCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCT-CATATTGTGACTGATGCATGTCCC
1 TGCCGATG-CATATCCCAGACAT-GTCTTACACTGGCT-TACATATCAAGACCGATGCATGTCAC
51390130 AGACATGTCTTACACTAGC
63 AGACATGTCTTACACTAGC
51390149 TCACTTAAGT
Statistics
Matches: 146, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
87 11 0.08
88 15 0.10
89 36 0.25
90 7 0.05
91 3 0.02
92 9 0.06
93 15 0.10
94 49 0.34
95 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (92 bp):
TGCCGATGCATATCCCAGACATGTCTTACACTGGCTTACATATCAAGACCGATGCATGTCACAGA
CATGTCTTACACTAGCACTCTTCTCAA
Found at i:51390511 original size:30 final size:30
Alignment explanation
Indices: 51390477--51390536 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
51390467 AATAATTTAT
* * *
51390477 ACTTTGGCAAAATGATCAATTTGCCCCTAG
1 ACTTTGACAAAATGACCAATTTACCCCTAG
*
51390507 ACTTTGACAAAATGACCATTTTACCCCTAG
1 ACTTTGACAAAATGACCAATTTACCCCTAG
51390537 GTTCGAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.30
Consensus pattern (30 bp):
ACTTTGACAAAATGACCAATTTACCCCTAG
Found at i:51398543 original size:18 final size:18
Alignment explanation
Indices: 51398520--51398555 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
51398510 TTTAGTCAAA
51398520 GAAATTTAATTAAAATAC
1 GAAATTTAATTAAAATAC
51398538 GAAATTTAATTAAAATAC
1 GAAATTTAATTAAAATAC
51398556 AATAAAGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.33
Consensus pattern (18 bp):
GAAATTTAATTAAAATAC
Found at i:51399722 original size:14 final size:14
Alignment explanation
Indices: 51399684--51399722 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
51399674 TTTGCTACCA
*
51399684 TGTTATTATTATGT
1 TGTTATTATTTTGT
*
51399698 TGTTACTATTTTGT
1 TGTTATTATTTTGT
51399712 TGTTATTATTT
1 TGTTATTATTT
51399723 GAATATTGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.18, C:0.03, G:0.13, T:0.67
Consensus pattern (14 bp):
TGTTATTATTTTGT
Found at i:51399806 original size:29 final size:30
Alignment explanation
Indices: 51399750--51399808 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
51399740 TATTTTATTA
51399750 TTAATTTTCTTACTATTTTAAAGACATTTG
1 TTAATTTTCTTACTATTTTAAAGACATTTG
* * *
51399780 TTAATTTT-TTATTATTTTAGAGGCATTTG
1 TTAATTTTCTTACTATTTTAAAGACATTTG
51399809 CTTGTTAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.27, C:0.07, G:0.10, T:0.56
Consensus pattern (30 bp):
TTAATTTTCTTACTATTTTAAAGACATTTG
Found at i:51399963 original size:13 final size:11
Alignment explanation
Indices: 51399929--51399956 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
51399919 TATATATATT
51399929 TAAAAATAATA
1 TAAAAATAATA
51399940 TAAAAATAATA
1 TAAAAATAATA
51399951 TAAAAA
1 TAAAAA
51399957 ATTAATACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (11 bp):
TAAAAATAATA
Found at i:51401782 original size:46 final size:46
Alignment explanation
Indices: 51401715--51401890 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
51401705 TATTTGGGCA
51401715 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
51401761 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
51401806 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
51401854 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51401891 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 64 0.57
47 28 0.25
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:51401870 original size:93 final size:93
Alignment explanation
Indices: 51401711--51401883 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
51401701 CGGATATTTG
*
51401711 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51401776 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
51401804 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51401869 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
51401884 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:51409078 original size:57 final size:58
Alignment explanation
Indices: 51408985--51409106 Score: 201
Period size: 57 Copynumber: 2.1 Consensus size: 58
51408975 GTGACGAGAT
* * *
51408985 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGACACTAAGTGTGCATGCTGGAAAAATA
51409043 TGGCACTAAGTGTGCGTGCTGG-AATATATGACACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATATGACACTAAGTGTGCATGCTGGAAAAATA
*
51409100 CGGCACT
1 TGGCACT
51409107 GGGTGTGAAG
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
57 38 0.63
58 22 0.37
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.26
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATATGACACTAAGTGTGCATGCTGGAAAAATA
Found at i:51409113 original size:29 final size:29
Alignment explanation
Indices: 51408985--51409106 Score: 201
Period size: 29 Copynumber: 4.2 Consensus size: 29
51408975 GTGACGAGAT
51408985 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
51409014 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
51409043 TGGCACTAAGTGTGCGTGCTGG-AATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
51409071 TGACACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
51409100 CGGCACT
1 TGGCACT
51409107 GGGTGTGAAG
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
28 26 0.30
29 61 0.70
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:51417144 original size:29 final size:29
Alignment explanation
Indices: 51417015--51417137 Score: 201
Period size: 29 Copynumber: 4.2 Consensus size: 29
51417005 GTGACGAGAT
51417015 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
51417044 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
51417073 TGGCACTAAGTGTGCGTGCTGGGAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
51417102 TGACACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
51417131 CGGCACT
1 TGGCACT
51417138 GGGTGTGAAG
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 87 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:51425774 original size:30 final size:30
Alignment explanation
Indices: 51425740--51425800 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
51425730 TCCTTAACTC
51425740 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
51425770 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
51425800 A
1 A
51425801 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:51432972 original size:16 final size:16
Alignment explanation
Indices: 51432953--51432983 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51432943 CTTCTTCACT
51432953 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
51432969 TACTTACTTACTTAA
1 TACTCACTTACTTAA
51432984 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:51432989 original size:20 final size:20
Alignment explanation
Indices: 51432950--51432989 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
51432940 AAACTTCTTC
* *
51432950 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
51432970 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
51432990 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:51433366 original size:55 final size:55
Alignment explanation
Indices: 51433176--51433429 Score: 253
Period size: 53 Copynumber: 4.8 Consensus size: 55
51433166 ACACGTGTAC
* * * * *
51433176 CTTACCATTGCTATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-T-GAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * *
51433225 CTTACCATTTCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* * * *
51433278 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAGAAA
* *
51433333 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCC-T-TAGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
* *
51433386 CCTTACCAATTTCCATG-CTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
51433430 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 23, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
49 35 0.20
50 1 0.01
52 2 0.01
53 50 0.29
54 36 0.21
55 45 0.26
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (55 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAA
Found at i:51438947 original size:40 final size:40
Alignment explanation
Indices: 51438903--51439075 Score: 154
Period size: 40 Copynumber: 4.3 Consensus size: 40
51438893 GCTACTCGTT
* * *
51438903 CAAATACCTTCGGGACATAGGCCAG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACATAGCCCAGATT-TAGTAACTCGCA
* * *
51438943 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCAGATTTAGTAACTCGCA
* * **
51438983 CAAATGCCTTC-GGATCTTAGTCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAGCCCAGATTTAGTAACTCGCA
* * * * *
51439023 CAATTGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCG
1 CAAATGCCTTCGGGA-CATAGCCCAGATTTAGTAACTCGCA
*
51439063 CAATTGCCTTCGG
1 CAAATGCCTTCGG
51439076 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.03
40 112 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCAGATTTAGTAACTCGCA
Found at i:51439076 original size:40 final size:40
Alignment explanation
Indices: 51438931--51439093 Score: 249
Period size: 40 Copynumber: 4.1 Consensus size: 40
51438921 AGGCCAGTTA
*
51438931 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATT
*
51438971 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCTGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
*
51439011 TAGTAACTCGCACAATTGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* *
51439051 TAGTAACTCGCGCAATTGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
51439091 TAG
1 TAG
51439094 CGGTCTCGAA
Statistics
Matches: 116, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
39 3 0.03
40 112 0.97
41 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:51445356 original size:40 final size:40
Alignment explanation
Indices: 51445306--51445531 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
51445296 AGCTACTATT
* * *
51445306 CAAATACCTTCGGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
51445346 CAAATGCCTTCGGGA-CTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
*
51445386 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * *
51445426 CAATTGCCTTCGGATCTTAGTCCGGATTTAGTAACTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * *
51445466 CAATTACCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
51445506 CAATTGCCTTCGAGA-CTTAGCCCGGA
1 CAAATGCCTTCG-GATCTTAGCCCGGA
51445532 CATCATTCGA
Statistics
Matches: 171, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
39 3 0.02
40 164 0.96
41 4 0.02
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:51451070 original size:27 final size:27
Alignment explanation
Indices: 51451040--51451194 Score: 190
Period size: 27 Copynumber: 5.7 Consensus size: 27
51451030 TATTGAAATG
*
51451040 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
51451067 CCCTCAATTTACAGAATTA-TCGTTTTA
1 CCCTCGATTTACAGAATTACT-GTTTTA
* *
51451094 CCCTCGA-TTCCTAGAATTACTATTTTA
1 CCCTCGATTTAC-AGAATTACTGTTTTA
* *
51451121 CCCTCGATTTATAAAATTACTGTTTTA
1 CCCTCGATTTACAGAATTACTGTTTTA
*
51451148 CCCTTGATTTACAGAATTA-TCGTTTTA
1 CCCTCGATTTACAGAATTACT-GTTTTA
*
51451175 CCCTCGATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
51451195 CAAAATACCC
Statistics
Matches: 108, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
26 5 0.05
27 100 0.93
28 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTACAGAATTACTGTTTTA
Found at i:51451193 original size:81 final size:81
Alignment explanation
Indices: 51451040--51451194 Score: 249
Period size: 81 Copynumber: 1.9 Consensus size: 81
51451030 TATTGAAATG
* *
51451040 CCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTCC
1 CCCTCGATTTATAAAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTAC
*
51451105 TAGAATTACTATTTTA
66 TAAAATTACTATTTTA
**
51451121 CCCTCGATTTATAAAATTACTGTTTTACCCTTGATTTACAGAATTATCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAAAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGA-TTA
51451186 C-AAAATTAC
65 CTAAAATTAC
51451195 CAAAATACCC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
81 65 0.96
82 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
CCCTCGATTTATAAAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCGATTAC
TAAAATTACTATTTTA
Found at i:51451203 original size:27 final size:27
Alignment explanation
Indices: 51451173--51451367 Score: 184
Period size: 27 Copynumber: 7.2 Consensus size: 27
51451163 ATTATCGTTT
**
51451173 TACCCTCGATTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
51451200 TACCCTCGATTAGGAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
51451227 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
* *
51451254 TACCC-CTATTTTGTAAAATTACCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * *
51451281 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
**
51451308 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
51451335 TACCC-CTGATTTACAAAATTA-CAGAAA
1 TACCCTC-GATTTGTAAAATTACCA-AAA
51451362 TACCCT
1 TACCCT
51451368 TACTTTCTAA
Statistics
Matches: 140, Mismatches: 20, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
26 5 0.04
27 134 0.96
28 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:51451204 original size:81 final size:81
Alignment explanation
Indices: 51451035--51451210 Score: 246
Period size: 81 Copynumber: 2.2 Consensus size: 81
51451025 CCAATTATTG
* *
51451035 AAATGCCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCG
1 AAATACCCTCGATTTATAAAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCG
* * *
51451100 ATTCCTAGAATTACTA
66 ATTACTAAAATTACCA
*** **
51451116 TTTTACCCTCGATTTATAAAATTACTGTTTTACCCTTGATTTACAGAATTATCGTTTTACCCTCG
1 AAATACCCTCGATTTATAAAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCG
51451181 ATTTAC-AAAATTACCA
66 A-TTACTAAAATTACCA
51451197 AAATACCCTCGATT
1 AAATACCCTCGATT
51451211 AGGAAAATTA
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 78 0.96
82 3 0.04
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (81 bp):
AAATACCCTCGATTTATAAAATTACTGTTTTACCCTCAATTTACAGAATTATCGTTTTACCCTCG
ATTACTAAAATTACCA
Found at i:51451231 original size:81 final size:81
Alignment explanation
Indices: 51451073--51451231 Score: 178
Period size: 81 Copynumber: 2.0 Consensus size: 81
51451063 TTTACCCTCA
* * * *** *
51451073 ATTTACAGAATTATCGTTTTACCCTCGATTCCTAGAATTACTATTTTACCCTCGATTTATAAAAT
1 ATTTACAGAATTATCGTTTTACCCTCGATTACTAAAATTACCAAAATACCCTCGATTTAGAAAAT
*****
51451138 TACTGTTTTACCCTTG
66 TACCAAAATACCCTTG
51451154 ATTTACAGAATTATCGTTTTACCCTCGATTTAC-AAAATTACCAAAATACCCTCGA-TTAGGAAA
1 ATTTACAGAATTATCGTTTTACCCTCGA-TTACTAAAATTACCAAAATACCCTCGATTTA-GAAA
51451217 ATTACCAAAATACCC
64 ATTACCAAAATACCC
51451232 CTGGTTTGTA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
80 3 0.05
81 58 0.91
82 3 0.05
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.36
Consensus pattern (81 bp):
ATTTACAGAATTATCGTTTTACCCTCGATTACTAAAATTACCAAAATACCCTCGATTTAGAAAAT
TACCAAAATACCCTTG
Found at i:51451258 original size:81 final size:79
Alignment explanation
Indices: 51451173--51451367 Score: 223
Period size: 81 Copynumber: 2.4 Consensus size: 79
51451163 ATTATCGTTT
**
51451173 TACCCTCGATTTACAAAATTACCAAAATACCCTCGATTAG-GAAAATTACCAAAATACCCCTGGT
1 TACCC-CGATTTACAAAATTACCAAAATACCCT-GATTAGTG-AAATTACCAAAATACCCCTAAT
51451237 TTGTAAAATTACCAAAA
63 TTGTAAAATTACCAAAA
* ** * * * * *
51451254 TACCCCTATTTTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAATT
1 TACCCCGA-TTTACAAAATTACCAAAATACC-CTGATTAGTGAAATTACCAAAATACCCCTAATT
51451319 TGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
51451335 TACCCCTGATTTACAAAATTA-CAGAAATACCCT
1 TACCCC-GATTTACAAAATTACCA-AAATACCCT
51451368 TACTTTCTAA
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
80 5 0.05
81 86 0.91
82 4 0.04
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (79 bp):
TACCCCGATTTACAAAATTACCAAAATACCCTGATTAGTGAAATTACCAAAATACCCCTAATTTG
TAAAATTACCAAAA
Found at i:51451379 original size:27 final size:27
Alignment explanation
Indices: 51451214--51451431 Score: 158
Period size: 27 Copynumber: 8.0 Consensus size: 27
51451204 CTCGATTAGG
* *
51451214 AAAATTACCA-AAATACCCCTGGTTTGT
1 AAAATTA-CAGAAATACCCTTAGTTTGT
* *
51451241 AAAATTACCA-AAATACCCCTATTTTGT
1 AAAATTA-CAGAAATACCCTTAGTTTGT
* *
51451268 AAAATTACCGAAATACCAC-TGGTTTGT
1 AAAATTACAGAAATACC-CTTAGTTTGT
* * *
51451295 GAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACAGAAATACCCTTAGTTTGT
* **
51451322 AAAATTACCA-AAATACCCCT-GATTTAC
1 AAAATTA-CAGAAATACCCTTAG-TTTGT
* *
51451349 AAAATTACAGAAATACCCTTACTTTCT
1 AAAATTACAGAAATACCCTTAGTTTGT
* * * **
51451376 AAAAATTATAGAAATACCATTGGTTTAC
1 -AAAATTACAGAAATACCCTTAGTTTGT
* *
51451404 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTACAGAAATACCCTTAGTTTGT
51451431 A
1 A
51451432 GATTTACCAA
Statistics
Matches: 154, Mismatches: 29, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
26 4 0.03
27 127 0.82
28 23 0.15
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTAGTTTGT
Found at i:51451406 original size:55 final size:54
Alignment explanation
Indices: 51451182--51451423 Score: 222
Period size: 54 Copynumber: 4.5 Consensus size: 54
51451172 TTACCCTCGA
** * * *
51451182 TTTACAAAATTACCA-AAATACCCTCGATTAGGAAAATTACCA-AAATACCCCTGG
1 TTTACAAAATTA-CAGAAATACCCTTAATTTGTAAAATTA-CAGAAATACCACTGG
** * * *
51451236 TTTGTAAAATTACCA-AAATACCCCTATTTTGTAAAATTACCGAAATACCACTGG
1 TTTACAAAATTA-CAGAAATACCCTTAATTTGTAAAATTACAGAAATACCACTGG
*** * * *
51451290 TTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCA-AAATACCCCTGA
1 TTTACAAAATTACAGAAATACCCTTAATTTGTAAAATTA-CAGAAATACCACTGG
* * * *
51451344 TTTACAAAATTACAGAAATACCCTTACTTTCTAAAAATTATAGAAATACCATTGG
1 TTTACAAAATTACAGAAATACCCTTAATTTGT-AAAATTACAGAAATACCACTGG
*
51451399 TTTACAAAATTACTGAAATACCCTT
1 TTTACAAAATTACAGAAATACCCTT
51451424 GGTTTGTAGA
Statistics
Matches: 155, Mismatches: 28, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
53 2 0.01
54 112 0.72
55 41 0.26
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (54 bp):
TTTACAAAATTACAGAAATACCCTTAATTTGTAAAATTACAGAAATACCACTGG
Found at i:51451512 original size:27 final size:27
Alignment explanation
Indices: 51451469--51451542 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
51451459 AAATGACTAA
*
51451469 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
51451496 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
51451523 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
51451543 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:51451546 original size:27 final size:27
Alignment explanation
Indices: 51451482--51451546 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
51451472 ACCCCTAATA
*
51451482 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
51451509 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
51451536 GGTAAAATGAC
1 GGTAAAATGAC
51451547 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:51452393 original size:25 final size:24
Alignment explanation
Indices: 51452355--51452424 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
51452345 AGGAAGTGCT
*
51452355 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
51452379 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
51452404 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
51452425 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:51452437 original size:24 final size:24
Alignment explanation
Indices: 51452354--51452437 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
51452344 GAGGAAGTGC
* *
51452354 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
51452379 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
51452403 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
51452427 TAAAAGAGGCT
1 TAAAAG-GGCT
51452438 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:51452619 original size:42 final size:42
Alignment explanation
Indices: 51452572--51452663 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
51452562 TAGTCTCCCC
*
51452572 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCACTGACATTACATGTGATATTG
51452614 AAATGGGCTTGCATACATTCACTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCACTGACATTACATGTGATATTG
51452656 AAATGGGC
1 AAATGGGC
51452664 CTAAGGGCCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCACTGACATTACATGTGATATTG
Found at i:51452736 original size:31 final size:31
Alignment explanation
Indices: 51452687--51452769 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
51452677 CGTTTACAGT
51452687 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
51452717 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
51452748 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
51452770 TCAAGACTAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:51453846 original size:25 final size:24
Alignment explanation
Indices: 51453818--51453864 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
51453808 ACCTTTGCTC
51453818 TTTTAGCATGAACTTGTCTTACCCT
1 TTTTAGCAT-AACTTGTCTTACCCT
*
51453843 TTTTAGTATAACTTGTCTTACC
1 TTTTAGCATAACTTGTCTTACC
51453865 TTACCTTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (24 bp):
TTTTAGCATAACTTGTCTTACCCT
Found at i:51454190 original size:55 final size:53
Alignment explanation
Indices: 51453935--51454190 Score: 227
Period size: 55 Copynumber: 4.8 Consensus size: 53
51453925 ACACGGGTAC
* * * **
51453935 CTTACCATTGCCATGACTTGTCATGGTCTTATGTGGTATCCTT---TT-GAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTACCTTAGAAA
** * *** *
51453984 CTTACCCTTGCCATGTCTCAACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTACCTTA-GAAA
* * *
51454037 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTACC-T-TAGAAA
* ** * *
51454092 CTTATCAATGCCATGTATTGACATGGTCTTACATGATATCCTTACCTTAGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTACCTTAGAAA
*
51454145 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTTA
1 -CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTA
51454191 AATCCTAATG
Statistics
Matches: 166, Mismatches: 29, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
49 36 0.22
52 4 0.02
53 43 0.26
54 11 0.07
55 70 0.42
56 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTACCTTAGAAA
Found at i:51461221 original size:12 final size:12
Alignment explanation
Indices: 51461204--51461233 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
51461194 CTGAAGTCAA
51461204 AATATTTATTTT
1 AATATTTATTTT
51461216 AATA-TTATTTT
1 AATATTTATTTT
51461227 AATATTT
1 AATATTT
51461234 TGAGCATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
AATATTTATTTT
Found at i:51465918 original size:44 final size:44
Alignment explanation
Indices: 51465870--51465956 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
51465860 GACAAAGTAA
51465870 ATATGAAAACCCAAAACCAAAGCCAAATAGTTAAAACAGTCCAC
1 ATATGAAAACCCAAAACCAAAGCCAAATAGTTAAAACAGTCCAC
51465914 ATATGAAAACCCAAAACCAAAGCCAAATAGTTAAAACAGTCCA
1 ATATGAAAACCCAAAACCAAAGCCAAATAGTTAAAACAGTCCA
51465957 GATAGTTCGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.53, C:0.24, G:0.09, T:0.14
Consensus pattern (44 bp):
ATATGAAAACCCAAAACCAAAGCCAAATAGTTAAAACAGTCCAC
Found at i:51474190 original size:24 final size:24
Alignment explanation
Indices: 51474158--51474364 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
51474148 TATCTCAAAT
*
51474158 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
51474182 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
51474206 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
51474230 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
51474254 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
51474278 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
51474302 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
51474326 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
51474350 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
51474365 ACATAATAAG
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:51476875 original size:18 final size:17
Alignment explanation
Indices: 51476838--51476876 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
51476828 TGCCCGTGTG
*
51476838 GGCCCACACGCCCATGT
1 GGCCCACACGCCAATGT
*
51476855 GGCCCACACGTCCAATTT
1 GGCCCACACG-CCAATGT
51476873 GGCC
1 GGCC
51476877 AAGCCGTGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.18, C:0.44, G:0.23, T:0.15
Consensus pattern (17 bp):
GGCCCACACGCCAATGT
Found at i:51479079 original size:27 final size:28
Alignment explanation
Indices: 51479049--51479118 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
51479039 ATAATAAGTC
*
51479049 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
51479076 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
51479104 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51479119 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51486234 original size:27 final size:28
Alignment explanation
Indices: 51486204--51486273 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
51486194 ATAATAAGTC
*
51486204 CGCACACTTAGTGCTATATAATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
51486231 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
51486259 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51486274 GTACAAATTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51490471 original size:35 final size:35
Alignment explanation
Indices: 51490432--51490535 Score: 127
Period size: 35 Copynumber: 2.9 Consensus size: 35
51490422 TGGCTACATG
* *
51490432 TGATGTTTTATTGAACTTGTATATTCGGCCATATA
1 TGATGATTTATTGAACTTGTGTATTCGGCCATATA
* * *
51490467 TGATGATTTATTGAACTTATGTATTCGGCAATATG
1 TGATGATTTATTGAACTTGTGTATTCGGCCATATA
* * *
51490502 TGATGATATAATGAACCTTGTGTATTTGGCCATA
1 TGATGATTTATTGAA-CTTGTGTATTCGGCCATA
51490536 CAAGTAAGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
35 43 0.74
36 15 0.26
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (35 bp):
TGATGATTTATTGAACTTGTGTATTCGGCCATATA
Found at i:51494088 original size:40 final size:39
Alignment explanation
Indices: 51494024--51494222 Score: 236
Period size: 39 Copynumber: 5.1 Consensus size: 39
51494014 GCTACTCGTT
* * * ** *
51494024 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
51494064 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCATAACTCGCA
* *
51494104 CAATTGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
51494143 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
* * *
51494182 CAATTGCCTTCGGGCTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
51494221 CA
1 CA
51494223 TTCATTCACA
Statistics
Matches: 144, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.69
40 45 0.31
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
Found at i:51494141 original size:39 final size:39
Alignment explanation
Indices: 51494060--51494222 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
51494050 TATGGTAACC
* *
51494060 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
51494100 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
51494139 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
51494178 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
51494217 CGCACA
1 CGCACA
51494223 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:51502073 original size:39 final size:39
Alignment explanation
Indices: 51502002--51502164 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
51501992 TTTGGTAACC
* *
51502002 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * * *
51502042 CGCATAATCGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
51502081 CGTACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
51502120 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
51502159 CGCACA
1 CGCACA
51502165 TTCATTCACA
Statistics
Matches: 110, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 95 0.86
40 15 0.14
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:51508546 original size:24 final size:24
Alignment explanation
Indices: 51508514--51508718 Score: 324
Period size: 24 Copynumber: 8.6 Consensus size: 24
51508504 TATCTCAAAT
*
51508514 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
51508538 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
51508562 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
51508586 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
51508610 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
51508634 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
51508658 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
51508682 GCACTATGTGT--GATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
51508704 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
51508719 ACATAATAAG
Statistics
Matches: 173, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
22 21 0.12
24 152 0.88
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:51515318 original size:35 final size:35
Alignment explanation
Indices: 51515279--51515382 Score: 127
Period size: 35 Copynumber: 2.9 Consensus size: 35
51515269 TGGCTACATG
* *
51515279 TGATGTTTTATTGAACTTGTATATTCGGCCATATA
1 TGATGATTTATTGAACTTGTGTATTCGGCCATATA
* * *
51515314 TGATGATTTATTGAACTTATGTATTCGGCAATATG
1 TGATGATTTATTGAACTTGTGTATTCGGCCATATA
* * *
51515349 TGATGATATAATGAACCTTGTGTATTTGGCCATA
1 TGATGATTTATTGAA-CTTGTGTATTCGGCCATA
51515383 CAAGTAAGTA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
35 43 0.74
36 15 0.26
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (35 bp):
TGATGATTTATTGAACTTGTGTATTCGGCCATATA
Found at i:51521002 original size:21 final size:20
Alignment explanation
Indices: 51520978--51521017 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
51520968 TATGAGCTTT
51520978 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
* *
51520999 AATGTTTGATTATAGTTAT
1 AATGATTGATGATAGTTAT
51521018 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:51527715 original size:34 final size:35
Alignment explanation
Indices: 51527666--51527753 Score: 92
Period size: 34 Copynumber: 2.5 Consensus size: 35
51527656 AATATGCACA
*
51527666 TTCAAAATAACTTCACATAAAACCGAATATAT-AAG
1 TTCAATATAACTTCACATAAAACCGAATA-ATCAAG
** **
51527701 TTCAATATAA-TTCACATGTAATTGAATAATCAAG
1 TTCAATATAACTTCACATAAAACCGAATAATCAAG
51527735 TTCAATATAAGCTT-ACATA
1 TTCAATATAA-CTTCACATA
51527754 TACTTACCTA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
33 2 0.05
34 27 0.61
35 13 0.30
36 2 0.05
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.32
Consensus pattern (35 bp):
TTCAATATAACTTCACATAAAACCGAATAATCAAG
Found at i:51529786 original size:40 final size:40
Alignment explanation
Indices: 51529741--51529908 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
51529731 CGGAATATAA
51529741 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
51529781 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
51529821 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
51529861 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
51529901 CCGGATAT
1 CCGGATAT
51529909 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:51529891 original size:80 final size:80
Alignment explanation
Indices: 51529757--51529906 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
51529747 ATAACCACGT
* *
51529757 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
51529822 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
51529837 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
51529900 CCCGGAT
64 CCCGGAT
51529907 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:51537865 original size:40 final size:40
Alignment explanation
Indices: 51537761--51537888 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 40
51537751 CGGAATATAA
** *
51537761 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
* * * *
51537801 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * * *
51537841 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
51537881 CCGGATAT
1 CCGGATAT
51537889 CATTCAATTT
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:51543410 original size:40 final size:40
Alignment explanation
Indices: 51543366--51543486 Score: 136
Period size: 40 Copynumber: 3.0 Consensus size: 40
51543356 TAAATTCCAC
* *
51543366 ATATAGCCAAAGCTATTCTAATTCA-CACACTAAGTGCTTT
1 ATATAGCCGAAGCTATACTAATT-AGCACACTAAGTGCTTT
** *
51543406 ATATAATCGAAGCTATACTGATTAGCACACTAAGTGCTTT
1 ATATAGCCGAAGCTATACTAATTAGCACACTAAGTGCTTT
* ** * *
51543446 ATATAGCTGAAGCTATACCGATTGGCACACTAAGTGTTTT
1 ATATAGCCGAAGCTATACTAATTAGCACACTAAGTGCTTT
51543486 A
1 A
51543487 CATAATCGAT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 68 0.99
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (40 bp):
ATATAGCCGAAGCTATACTAATTAGCACACTAAGTGCTTT
Found at i:51554644 original size:28 final size:28
Alignment explanation
Indices: 51554612--51554711 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
51554602 ATAGTGAATC
* * *
51554612 CGCACACTTAGTGCTATATATTTC-AGCT
1 CGCACACTTAGTGCTATAGA-ATCAAACT
51554640 CGCACACTTAGTGCTATAGAATCAAACT
1 CGCACACTTAGTGCTATAGAATCAAACT
* * * *
51554668 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATAGAA--TCAAACT
51554698 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51554712 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 2 0.03
28 41 0.66
30 19 0.31
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGAATCAAACT
Found at i:51561728 original size:28 final size:28
Alignment explanation
Indices: 51561696--51561795 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
51561686 ATAGTGAATC
* * *
51561696 CGCACACTTAGTGCTATATATTTC-AGCT
1 CGCACACTTAGTGCTATAGA-ATCAAACT
51561724 CGCACACTTAGTGCTATAGAATCAAACT
1 CGCACACTTAGTGCTATAGAATCAAACT
* * * *
51561752 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATAGAA--TCAAACT
51561782 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51561796 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 2 0.03
28 41 0.66
30 19 0.31
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGAATCAAACT
Found at i:51568827 original size:46 final size:46
Alignment explanation
Indices: 51568776--51568904 Score: 156
Period size: 46 Copynumber: 2.8 Consensus size: 46
51568766 ATGGTTGAGC
*
51568776 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GATGCAACAGG
* * * *
51568823 -TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAAC-AGG
51568868 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
51568905 GGGCGGGTTA
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
43 6 0.09
45 4 0.06
46 28 0.41
47 28 0.41
48 3 0.04
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (46 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATGCAACAGG
Found at i:51577986 original size:27 final size:27
Alignment explanation
Indices: 51577936--51578021 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
51577926 AATTATTTCA
51577936 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACATATATCTGT
* *
51577963 TCTGGTGGCTCTGCCAGGAT-TATCTAT
1 TCTGGTGGCTCTGCCA-CATATATCTGT
* * **
51577990 ATTTGGTGACTCTATCACAT-TATCTGT
1 -TCTGGTGGCTCTGCCACATATATCTGT
51578017 TCTGG
1 TCTGG
51578022 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
26 4 0.08
27 30 0.62
28 14 0.29
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACATATATCTGT
Found at i:51579774 original size:41 final size:41
Alignment explanation
Indices: 51579736--51579879 Score: 175
Period size: 41 Copynumber: 3.5 Consensus size: 41
51579726 TCAAATATAT
*
51579736 TCATTTTAAACCTTTTCATTTGATATTCTTTTT-GAATATTG
1 TCATTTTCAACCTTTTCATTTGATA-TCTTTTTCGAATATTG
* * * **
51579777 ACATTTTCAACCTTTTCATTTGATATCTTTTTGGGATATCA
1 TCATTTTCAACCTTTTCATTTGATATCTTTTTCGAATATTG
* *
51579818 TTA-TTTCAACCTTTTCATTTGATATCTTTTTCTAATATTG
1 TCATTTTCAACCTTTTCATTTGATATCTTTTTCGAATATTG
* *
51579858 TCCTTTTCAACATTTTCATTTG
1 TCATTTTCAACCTTTTCATTTG
51579880 TTAACCTTTT
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 40 0.47
41 46 0.53
ACGTcount: A:0.23, C:0.16, G:0.07, T:0.54
Consensus pattern (41 bp):
TCATTTTCAACCTTTTCATTTGATATCTTTTTCGAATATTG
Found at i:51580091 original size:41 final size:41
Alignment explanation
Indices: 51580034--51580114 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
51580024 AAACAAGAAA
* *
51580034 AGGTTTAAATGTATAAGATGTAAAGATAAGTTTCATTTTCT
1 AGGTTTAAACGTATAAGATGTAAAGATAAGTTTCAGTTTCT
* *
51580075 AGGTTTAAGCGTATAAGATGTAAAGATAGGTTTCAGTTTC
1 AGGTTTAAACGTATAAGATGTAAAGATAAGTTTCAGTTTC
51580115 AGTTTCAGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (41 bp):
AGGTTTAAACGTATAAGATGTAAAGATAAGTTTCAGTTTCT
Found at i:51582439 original size:24 final size:24
Alignment explanation
Indices: 51582411--51582512 Score: 77
Period size: 23 Copynumber: 4.4 Consensus size: 24
51582401 TCAGCTCGTA
* *
51582411 AGAGCTTACTGTTTTTAGCTTATT
1 AGAGCTTACTGTTTTTAGCTCAAT
* **
51582435 GGAGCTTAC-CATTTTAGCTCAAT
1 AGAGCTTACTGTTTTTAGCTCAAT
* *
51582458 AGAGCTTACTG--TTCAGCTCGAT
1 AGAGCTTACTGTTTTTAGCTCAAT
* * * *
51582480 ATAGCTTACCG-TTTCAGCTCATT
1 AGAGCTTACTGTTTTTAGCTCAAT
51582503 AGAGCTTACT
1 AGAGCTTACT
51582513 ATTCATCAAC
Statistics
Matches: 61, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
22 18 0.30
23 35 0.57
24 8 0.13
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.38
Consensus pattern (24 bp):
AGAGCTTACTGTTTTTAGCTCAAT
Done.