Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 17 of 425
Found at i:4552848 original size:26 final size:26
Alignment explanation
Indices: 4552811--4552895 Score: 152
Period size: 26 Copynumber: 3.3 Consensus size: 26
4552801 TGATACAAAT
4552811 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
4552837 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
4552863 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
4552889 TGATAAT
1 TGATAAT
4552896 CATGATAATG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:4552905 original size:61 final size:61
Alignment explanation
Indices: 4552835--4552955 Score: 224
Period size: 61 Copynumber: 2.0 Consensus size: 61
4552825 GTAAATGTTC
4552835 CATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAAT
1 CATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAAT
* *
4552896 CATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTAGGTAAATGTTTCATGATAA
1 CATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAA
4552956 GAATATCATG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.36
Consensus pattern (61 bp):
CATGATAATGGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCATGATAAT
Found at i:4552910 original size:35 final size:35
Alignment explanation
Indices: 4552860--4552930 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
4552850 GGTAAATGTT
4552860 TCATGATAATAGGTTAGGTAAATGTTCCATGATAA
1 TCATGATAATAGGTTAGGTAAATGTTCCATGATAA
* *
4552895 TCATGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TCATGATAATAGGTTAGGTAAATGTTCCATGATAA
4552930 T
1 T
4552931 GGGTTAGGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (35 bp):
TCATGATAATAGGTTAGGTAAATGTTCCATGATAA
Found at i:4552931 original size:26 final size:26
Alignment explanation
Indices: 4552895--4552955 Score: 122
Period size: 26 Copynumber: 2.3 Consensus size: 26
4552885 TCCATGATAA
4552895 TCATGATAATGGGTTAGGTAAATGTT
1 TCATGATAATGGGTTAGGTAAATGTT
4552921 TCATGATAATGGGTTAGGTAAATGTT
1 TCATGATAATGGGTTAGGTAAATGTT
4552947 TCATGATAA
1 TCATGATAA
4552956 GAATATCATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.38
Consensus pattern (26 bp):
TCATGATAATGGGTTAGGTAAATGTT
Found at i:4554975 original size:136 final size:137
Alignment explanation
Indices: 4554731--4555016 Score: 538
Period size: 136 Copynumber: 2.1 Consensus size: 137
4554721 GAGTAGTCTC
4554731 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
4554796 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCT-GCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
4554860 ACTGTTA
131 ACTGTTA
4554867 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
4554932 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
4554997 ACTGTTA
131 ACTGTTA
**
4555004 CCTGAATGGGCTT
1 CCCAAATGGGCTT
4555017 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 118 0.81
137 28 0.19
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGACTCTGGCCCAGTACC
ACTGTTA
Found at i:4555606 original size:21 final size:22
Alignment explanation
Indices: 4555566--4555616 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
4555556 TGTATATACG
* *
4555566 TATATTTTATGTACATTATGTA
1 TATATTTTATATACATTATGCA
* *
4555588 TATATTTTA-ATATATTATGCG
1 TATATTTTATATACATTATGCA
4555609 TATATTTT
1 TATATTTT
4555617 GTTTTGTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.57
Consensus pattern (22 bp):
TATATTTTATATACATTATGCA
Found at i:4556230 original size:20 final size:23
Alignment explanation
Indices: 4556196--4556236 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
4556186 TACTAACGTA
4556196 TATATATACTATGTA-ATTTTAT
1 TATATATACTATGTACATTTTAT
4556218 TATAT-TACT-TGTACATTTT
1 TATATATACTATGTACATTTT
4556237 TATATACCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 9 0.50
22 5 0.28
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (23 bp):
TATATATACTATGTACATTTTAT
Found at i:4556242 original size:21 final size:21
Alignment explanation
Indices: 4556194--4556242 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
4556184 ATTACTAACG
4556194 TATATATATACTATGTAATTT
1 TATATATATACTATGTAATTT
4556215 TAT-TATATTACT-TGTACATTT
1 TATATATA-TACTATGTA-ATTT
4556236 T-TATATA
1 TATATATA
4556243 CCATGCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (21 bp):
TATATATATACTATGTAATTT
Found at i:4557959 original size:137 final size:137
Alignment explanation
Indices: 4557677--4557963 Score: 513
Period size: 138 Copynumber: 2.1 Consensus size: 137
4557667 GAGTAGTCTC
* *
4557677 CCCAAATGGGTTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
4557742 GTTATCTGAATAAGGGACTAAGGCCCAGTTTATTGTAATCTGAAAAAGGGCTCTGGCCCAGTACC
66 GTTATCTGAATAAGGGACTAAGGCCCAGTTTATTGTAATCTGAAAAAGGGCTCTGGCCCAGTACC
4557807 ACTGTTA
131 ACTGTTA
4557814 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
4557879 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTG-AAAAGGGCTCTGGCCCAGTAC
65 TGTTATCTGAATAAGGGACTAAGGCCCAGTTTATTGTAATCTGAAAAAGGGCTCTGGCCCAGTAC
4557943 CACTGTTA
130 CACTGTTA
**
4557951 CCTGAATGGGCTT
1 CCCAAATGGGCTT
4557964 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
137 59 0.41
138 85 0.59
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGACTAAGGCCCAGTTTATTGTAATCTGAAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:4563326 original size:20 final size:20
Alignment explanation
Indices: 4563272--4563320 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
4563262 GCTTATTTTG
*
4563272 AGTAAATGGAATGGAAAGTA
1 AGTAAATGGAATGGTAAGTA
*
4563292 AGTAAATAGAATGGTAAGTA
1 AGTAAATGGAATGGTAAGTA
4563312 AGTAAATGG
1 AGTAAATGG
4563321 CGTGGTTCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (20 bp):
AGTAAATGGAATGGTAAGTA
Found at i:4570940 original size:5 final size:5
Alignment explanation
Indices: 4570922--4570962 Score: 73
Period size: 5 Copynumber: 8.0 Consensus size: 5
4570912 TTTCTTTTAT
4570922 ATATA ATAATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA AT-ATA ATATA ATATA ATATA ATATA ATATA ATATA
4570963 CTTAATAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 30 0.86
6 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:4578592 original size:18 final size:17
Alignment explanation
Indices: 4578569--4578609 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
4578559 AACAAAAGTT
4578569 ATTTTAAAAAGTTATAAA
1 ATTTTAAAAA-TTATAAA
4578587 ATTTT-AAAATTATAAA
1 ATTTTAAAAATTATAAA
4578603 ACTTTTA
1 A-TTTTA
4578610 TTAAAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 8 0.38
17 8 0.38
18 5 0.24
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (17 bp):
ATTTTAAAAATTATAAA
Found at i:4578770 original size:3 final size:3
Alignment explanation
Indices: 4578762--4578808 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
4578752 TTAAGGTTAA
4578762 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
4578809 GAAAACATAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:4579718 original size:74 final size:74
Alignment explanation
Indices: 4579597--4579744 Score: 242
Period size: 74 Copynumber: 2.0 Consensus size: 74
4579587 GATTGCTCGG
* *
4579597 ATTGGATTGAACATAAGATAGAGTACAGTCGTGATATGGCATGTTGTAGGGGATTGGAGTGGACA
1 ATTGGATTGAACACAAGATAAAGTACAGTCGTGATATGGCATGTTGTAGGGGATTGGAGTGGACA
4579662 TGGTTTGGA
66 TGGTTTGGA
* * * *
4579671 ATTGGATTGAACGCAGGATAAAGTATAGTCGTGATATGGCATGTTGTAGGGGATTGGAGTGGAGA
1 ATTGGATTGAACACAAGATAAAGTACAGTCGTGATATGGCATGTTGTAGGGGATTGGAGTGGACA
4579736 TGGTTTGGA
66 TGGTTTGGA
4579745 GAGATGTATA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.28, C:0.06, G:0.36, T:0.30
Consensus pattern (74 bp):
ATTGGATTGAACACAAGATAAAGTACAGTCGTGATATGGCATGTTGTAGGGGATTGGAGTGGACA
TGGTTTGGA
Found at i:4579915 original size:35 final size:34
Alignment explanation
Indices: 4579819--4579925 Score: 124
Period size: 35 Copynumber: 3.1 Consensus size: 34
4579809 CACTCTCTGT
* * *
4579819 TTGGCGTGTTTCGATTGGACTTGCTCGTATAAGCA
1 TTGGCGTGTTTCG-TTGGACTAGCTCTTATGAGCA
* *
4579854 TTAGCGTGTTTCAGTTGGACTAGCTCTTATGAGTA
1 TTGGCGTGTTTC-GTTGGACTAGCTCTTATGAGCA
* *
4579889 TTGGCGTGTTACGTTTGGACTAGCTCTTGTGAGCA
1 TTGGCGTGTTTCG-TTGGACTAGCTCTTATGAGCA
4579924 TT
1 TT
4579926 TGATGTATTT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
34 1 0.02
35 59 0.97
36 1 0.02
ACGTcount: A:0.17, C:0.16, G:0.28, T:0.39
Consensus pattern (34 bp):
TTGGCGTGTTTCGTTGGACTAGCTCTTATGAGCA
Found at i:4586909 original size:31 final size:31
Alignment explanation
Indices: 4586874--4586940 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
4586864 CTTCCTGCAT
* * *
4586874 TAAAATCCAACCAAATACAACAAATATAGTA
1 TAAAATCCAACAAAAAACAACAAATATAGCA
* * *
4586905 TAAAATGCAGCAAAAAACAACAAATTTAGCA
1 TAAAATCCAACAAAAAACAACAAATATAGCA
4586936 TAAAA
1 TAAAA
4586941 AATACAACCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.60, C:0.16, G:0.06, T:0.18
Consensus pattern (31 bp):
TAAAATCCAACAAAAAACAACAAATATAGCA
Found at i:4587217 original size:21 final size:21
Alignment explanation
Indices: 4587191--4587242 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
4587181 GCTGCCATCA
4587191 CTGCTGCCTCTGCCTCCCCCG
1 CTGCTGCCTCTGCCTCCCCCG
* * *
4587212 CTGCTG-TTGCTGCCTCCCTCT
1 CTGCTGCCT-CTGCCTCCCCCG
4587233 CTGCTGCCTC
1 CTGCTGCCTC
4587243 CACTCTAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 1 0.04
21 23 0.92
22 1 0.04
ACGTcount: A:0.00, C:0.50, G:0.19, T:0.31
Consensus pattern (21 bp):
CTGCTGCCTCTGCCTCCCCCG
Found at i:4587239 original size:15 final size:16
Alignment explanation
Indices: 4587219--4587248 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
4587209 CCGCTGCTGT
4587219 TGCTGCCTCC-CTCTC
1 TGCTGCCTCCACTCTC
4587234 TGCTGCCTCCACTCT
1 TGCTGCCTCCACTCT
4587249 AAGTTGTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.03, C:0.50, G:0.13, T:0.33
Consensus pattern (16 bp):
TGCTGCCTCCACTCTC
Found at i:4589305 original size:22 final size:23
Alignment explanation
Indices: 4589280--4589342 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 23
4589270 TTTTTCACAA
4589280 ATTACTTTTATTATT-TTAGATT
1 ATTACTTTTATTATTATTAGATT
*
4589302 ATTA--TTTATATATTATTATATT
1 ATTACTTTTAT-TATTATTAGATT
* *
4589324 TTTACTTGTATTATATATT
1 ATTACTTTTATTAT-TATT
4589343 TATTAATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
20 5 0.15
21 4 0.12
22 13 0.39
23 3 0.09
24 8 0.24
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (23 bp):
ATTACTTTTATTATTATTAGATT
Found at i:4589317 original size:11 final size:11
Alignment explanation
Indices: 4589301--4589374 Score: 59
Period size: 11 Copynumber: 6.7 Consensus size: 11
4589291 TATTTTAGAT
4589301 TATTATTTATA
1 TATTATTTATA
4589312 TATTA-TTATA
1 TATTATTTATA
*
4589322 TTTTTACTTGTAT-
1 -TATTA-TT-TATA
4589335 TATATATTTAT-
1 TAT-TATTTATA
4589346 TAATTATTTATA
1 T-ATTATTTATA
4589358 TA-TA-TTATA
1 TATTATTTATA
4589367 TATTATTT
1 TATTATTT
4589375 TACATATATA
Statistics
Matches: 52, Mismatches: 2, Indels: 18
0.72 0.03 0.25
Matches are distributed among these distances:
9 7 0.13
10 9 0.17
11 23 0.44
12 7 0.13
13 3 0.06
14 3 0.06
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (11 bp):
TATTATTTATA
Found at i:4589468 original size:17 final size:18
Alignment explanation
Indices: 4589448--4589503 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 18
4589438 TTATAGTTTA
4589448 TATTTTTATATAAT-TAT
1 TATTTTTATATAATATAT
*
4589465 TATTCTTATA-AATATAT
1 TATTTTTATATAATATAT
*
4589482 T-TTTATTATATATTATAT
1 TATTT-TTATATAATATAT
4589500 TATT
1 TATT
4589504 AAATATCACA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
16 5 0.16
17 18 0.56
18 7 0.22
19 2 0.06
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTTTATATAATATAT
Found at i:4589507 original size:30 final size:31
Alignment explanation
Indices: 4589446--4589509 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
4589436 TATTATAGTT
*
4589446 TATATTTTTATATAATTATTATTCTTATAAA
1 TATATTTTTATATAATTATTATTCATATAAA
4589477 TATATTTTTATTATATATTA-TATT-AT-TAAA
1 TATATTTTTA-TATA-ATTATTATTCATATAAA
4589507 TAT
1 TAT
4589510 CACACTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 7 0.23
31 11 0.37
32 8 0.27
33 4 0.13
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (31 bp):
TATATTTTTATATAATTATTATTCATATAAA
Found at i:4591894 original size:27 final size:26
Alignment explanation
Indices: 4591857--4591970 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 26
4591847 AGCATGGCTG
* *
4591857 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
4591883 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
4591911 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
4591938 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
4591965 CCAGAA
1 CCAGAA
4591971 TGCTTCCTCC
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
26 5 0.06
27 55 0.71
28 17 0.22
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:4591971 original size:54 final size:54
Alignment explanation
Indices: 4591857--4591971 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
4591847 AGCATGGCTG
* *
4591857 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAATAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
4591911 CCAGAATAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCATAGCCA
1 CCAGAATAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
4591965 CCAGAAT
1 CCAGAAT
4591972 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAATAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:4592091 original size:24 final size:24
Alignment explanation
Indices: 4592064--4592117 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
4592054 TTTCAGTCAA
*
4592064 AATT-AACTCTAGGGGTATAACGGT
1 AATTGAAC-CTAGGGGTATAACAGT
*
4592088 AATTTTGCACCTAGGGGTATAACAGT
1 AA--TTGAACCTAGGGGTATAACAGT
4592114 AATT
1 AATT
4592118 TTCCATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
24 4 0.16
26 19 0.76
27 2 0.08
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31
Consensus pattern (24 bp):
AATTGAACCTAGGGGTATAACAGT
Found at i:4593603 original size:26 final size:26
Alignment explanation
Indices: 4593567--4593676 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
4593557 CATGAAATTC
4593567 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
4593593 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
4593619 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
4593645 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
4593671 TTATCA
1 TTATCA
4593677 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:4598811 original size:9 final size:9
Alignment explanation
Indices: 4598656--4598838 Score: 220
Period size: 9 Copynumber: 21.2 Consensus size: 9
4598646 TATTTATGCA
4598656 TTATGTAAG
1 TTATGTAAG
* *
4598665 TTATTTAAA
1 TTATGTAAG
4598674 TTATGTAAG
1 TTATGTAAG
*
4598683 TTATGTGAG
1 TTATGTAAG
* *
4598692 TTATATGAG
1 TTATGTAAG
4598701 TTATGTAAG
1 TTATGTAAG
4598710 TTATGTAA-
1 TTATGTAAG
*
4598718 --ATATAAG
1 TTATGTAAG
4598725 TTATGTAAG
1 TTATGTAAG
*
4598734 TTATGTGAG
1 TTATGTAAG
4598743 TTATGTAAG
1 TTATGTAAG
4598752 TTATGTAAG
1 TTATGTAAG
4598761 TTATGTAAG
1 TTATGTAAG
4598770 TTATGTAAG
1 TTATGTAAG
*
4598779 TTATGTGAG
1 TTATGTAAG
4598788 TTATGT-A-
1 TTATGTAAG
4598795 --A-GTAAG
1 TTATGTAAG
*
4598801 TTATGTGAG
1 TTATGTAAG
4598810 TTATGTAAG
1 TTATGTAAG
*
4598819 TTATGTGAG
1 TTATGTAAG
4598828 TTATGTAAG
1 TTATGTAAG
4598837 TT
1 TT
4598839 CAAGTATATA
Statistics
Matches: 149, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
6 5 0.03
8 2 0.01
9 138 0.93
ACGTcount: A:0.32, C:0.00, G:0.23, T:0.45
Consensus pattern (9 bp):
TTATGTAAG
Found at i:4599189 original size:22 final size:22
Alignment explanation
Indices: 4599159--4599261 Score: 103
Period size: 22 Copynumber: 4.9 Consensus size: 22
4599149 TATTTAAATA
4599159 AATTAATCCAAATTATATTATC
1 AATTAATCCAAATTATATTATC
*
4599181 AATTTATCCAAATTATA-T-T-
1 AATTAATCCAAATTATATTATC
* *
4599200 AATTAAAT--AATATT-TA-AATA
1 AATT-AATCCAA-ATTATATTATC
*
4599220 AATTAATCCAAATTATATTATT
1 AATTAATCCAAATTATATTATC
4599242 AATTAATCCAAATTATATTA
1 AATTAATCCAAATTATATTA
4599262 ATTAAATAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
18 4 0.06
19 11 0.16
20 10 0.15
21 5 0.07
22 38 0.56
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (22 bp):
AATTAATCCAAATTATATTATC
Found at i:4599194 original size:61 final size:61
Alignment explanation
Indices: 4599129--4599300 Score: 317
Period size: 61 Copynumber: 2.8 Consensus size: 61
4599119 ATATTTATAA
* *
4599129 AAATTATATTAATTTAATAATATTTAAATAAATTAATCCAAATTATATTATCAATTTATCC
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTATCAATTAATCC
*
4599190 AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTATTAATTAATCC
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTATCAATTAATCC
4599251 AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTA
1 AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTA
4599301 ATTAAATAAT
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 108 1.00
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (61 bp):
AAATTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTATCAATTAATCC
Found at i:4599238 original size:100 final size:101
Alignment explanation
Indices: 4599109--4599342 Score: 289
Period size: 100 Copynumber: 2.3 Consensus size: 101
4599099 AATTTTATTT
* ** ** *
4599109 TAATTAAATAATATTTATAAAAATTATATTAATTTAATAATATTTAAA-TAAATTAATCCAAATT
1 TAATTAAATAA-ATTAATCCAAATTATATTAATTTAATAA-ATCCAAATTAAATTAAT-CAAATA
* *
4599173 ATA-TT-ATCAATTTATCCAAATTATATTAATTAAATAA
63 ATATTTAATAAATTAATCCAAATTATATTAATTAAATAA
* * * *
4599210 TATTTAAATAAATTAATCCAAATTATATT-A-TTAATTAATCCAAATTATATTAATTAAATAATA
1 TAATTAAATAAATTAATCCAAATTATATTAATTTAATAAATCCAAATTAAATTAATCAAATAATA
4599273 TTTAAATAAATTAATCCAAATTATATTAATTAAATAA
66 TTT-AATAAATTAATCCAAATTATATTAATTAAATAA
4599310 TAATTAAATAAATTAATCCAAATTATATTAATT
1 TAATTAAATAAATTAATCCAAATTATATTAATT
4599343 AAAATAAGAT
Statistics
Matches: 114, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
97 12 0.11
98 16 0.14
99 1 0.01
100 73 0.64
101 11 0.10
102 1 0.01
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.43
Consensus pattern (101 bp):
TAATTAAATAAATTAATCCAAATTATATTAATTTAATAAATCCAAATTAAATTAATCAAATAATA
TTTAATAAATTAATCCAAATTATATTAATTAAATAA
Found at i:4599239 original size:15 final size:14
Alignment explanation
Indices: 4599239--4599341 Score: 62
Period size: 14 Copynumber: 7.8 Consensus size: 14
4599229 AAATTATATT
4599239 ATTA-ATTAATCCAA
1 ATTATATTAAT-CAA
*
4599253 ATTATATTAATTAA
1 ATTATATTAATCAA
*
4599267 ATAATATT--T-AA
1 ATTATATTAATCAA
*
4599278 A-TAAATTAATCCAA
1 ATTATATTAAT-CAA
*
4599292 ATTATATTAATTAA
1 ATTATATTAATCAA
*
4599306 A-TA-A-TAATTAA
1 ATTATATTAATCAA
*
4599317 A-TAAATTAATCCAA
1 ATTATATTAAT-CAA
4599331 ATTATATTAAT
1 ATTATATTAAT
4599342 TAAAATAAGA
Statistics
Matches: 71, Mismatches: 8, Indels: 19
0.72 0.08 0.19
Matches are distributed among these distances:
10 4 0.06
11 13 0.18
12 4 0.06
13 6 0.08
14 22 0.31
15 22 0.31
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (14 bp):
ATTATATTAATCAA
Found at i:4599289 original size:39 final size:39
Alignment explanation
Indices: 4599242--4599345 Score: 199
Period size: 39 Copynumber: 2.7 Consensus size: 39
4599232 TTATATTATT
*
4599242 AATTAATCCAAATTATATTAATTAAATAATATTTAAATA
1 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
4599281 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
1 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
4599320 AATTAATCCAAATTATATTAATTAAA
1 AATTAATCCAAATTATATTAATTAAA
4599346 ATAAGATTGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (39 bp):
AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
Found at i:4599315 original size:11 final size:12
Alignment explanation
Indices: 4599197--4599345 Score: 67
Period size: 11 Copynumber: 11.8 Consensus size: 12
4599187 TCCAAATTAT
4599197 ATTAATTAAATA
1 ATTAATTAAATA
*
4599209 A-TATTTAAATAA
1 ATTAATTAAAT-A
**
4599221 ATTAA-TCCA-A
1 ATTAATTAAATA
*
4599231 ATTATATT-ATTA
1 ATTA-ATTAAATA
*
4599243 ATTAATCCAAATTA
1 ATTAAT-TAAA-TA
4599257 TATTAATTAAATA
1 -ATTAATTAAATA
*
4599270 A-TATTTAAATAA
1 ATTAATTAAAT-A
*
4599282 ATTAATCCAAATTA
1 ATTAAT-TAAA-TA
4599296 TATTAATTAAATA
1 -ATTAATTAAATA
4599309 A-TAATTAAATAA
1 ATTAATTAAAT-A
*
4599321 ATTAATCCAAATTA
1 ATTAAT-TAAA-TA
4599335 TATTAATTAAA
1 -ATTAATTAAA
4599346 ATAAGATTGA
Statistics
Matches: 103, Mismatches: 15, Indels: 36
0.67 0.10 0.23
Matches are distributed among these distances:
10 5 0.05
11 28 0.27
12 17 0.17
13 14 0.14
14 19 0.18
15 20 0.19
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (12 bp):
ATTAATTAAATA
Found at i:4599319 original size:8 final size:9
Alignment explanation
Indices: 4599251--4599325 Score: 53
Period size: 9 Copynumber: 7.8 Consensus size: 9
4599241 TAATTAATCC
*
4599251 AAATTATAT
1 AAATTAAAT
*
4599260 TAATTAAAT
1 AAATTAAAT
4599269 AATATTTAAAT
1 AA-A-TTAAAT
4599280 AAATT-AAT
1 AAATTAAAT
*
4599288 CCAAATTATAT
1 --AAATTAAAT
*
4599299 TAATTAAAT
1 AAATTAAAT
4599308 AATAATTAAAT
1 -A-AATTAAAT
4599319 AAATTAA
1 AAATTAA
4599326 TCCAAATTAT
Statistics
Matches: 52, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
8 3 0.06
9 23 0.44
10 8 0.15
11 18 0.35
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (9 bp):
AAATTAAAT
Found at i:4599347 original size:15 final size:14
Alignment explanation
Indices: 4599103--4599345 Score: 92
Period size: 15 Copynumber: 17.0 Consensus size: 14
4599093 GGAAAAAATT
*
4599103 TTATTTTAATTAAA
1 TTATATTAATTAAA
* * *
4599117 TAATATTTATAAAAA
1 TTATATTAAT-TAAA
*
4599132 TTATATTAATTTAA
1 TTATATTAATTAAA
* *
4599146 TAATATTTAAATAAA
1 TTATA-TTAATTAAA
* *
4599161 TTA-ATCCAAATTATA
1 TTATAT--TAATTAAA
* *
4599176 TTATCAATTTATCCAAA
1 TTAT--ATTAAT-TAAA
4599193 TTATATTAATTAAA
1 TTATATTAATTAAA
* *
4599207 TAATATTTAAATAAA
1 TTATA-TTAATTAAA
* *
4599222 TTA-ATCCAAATTATA
1 TTATAT--TAATTAAA
*
4599237 TTATTAATTAATCCAAA
1 TTA-T-ATTAAT-TAAA
4599254 TTATATTAATTAAA
1 TTATATTAATTAAA
*
4599268 -TA-A-TATTTAAA
1 TTATATTAATTAAA
* *
4599279 -TAAATTAATCCAAA
1 TTATATTAAT-TAAA
4599293 TTATATTAATTAAA
1 TTATATTAATTAAA
4599307 -TA-A-TAATTAAA
1 TTATATTAATTAAA
* *
4599318 -TAAATTAATCCAAA
1 TTATATTAAT-TAAA
4599332 TTATATTAATTAAA
1 TTATATTAATTAAA
4599346 ATAAGATTGA
Statistics
Matches: 167, Mismatches: 39, Indels: 46
0.66 0.15 0.18
Matches are distributed among these distances:
11 19 0.11
12 4 0.02
13 13 0.08
14 37 0.22
15 73 0.44
16 6 0.04
17 11 0.07
18 4 0.02
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (14 bp):
TTATATTAATTAAA
Found at i:4603112 original size:3 final size:3
Alignment explanation
Indices: 4603106--4603164 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
4603096 TTTTTCTCTT
4603106 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4603154 TTA TTA TTA TT
1 TTA TTA TTA TT
4603165 TACTATTTAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4603547 original size:21 final size:21
Alignment explanation
Indices: 4603521--4603575 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
4603511 AGTTTAAGGT
**
4603521 TTTATGGTTTTGGATTTAGGG
1 TTTATGGTTTTAAATTTAGGG
*
4603542 TTTATGGTTTAAAATTTAGGG
1 TTTATGGTTTTAAATTTAGGG
*
4603563 TTTATAGTTTTAA
1 TTTATGGTTTTAA
4603576 GACGTTTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (21 bp):
TTTATGGTTTTAAATTTAGGG
Found at i:4604407 original size:20 final size:19
Alignment explanation
Indices: 4604382--4604419 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
4604372 ATTTGACCAA
4604382 ATTTCTTGAAAATAAATTAG
1 ATTTC-TGAAAATAAATTAG
*
4604402 ATTTCTGTAAATAAATTA
1 ATTTCTGAAAATAAATTA
4604420 ACTCATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (19 bp):
ATTTCTGAAAATAAATTAG
Found at i:4605878 original size:27 final size:27
Alignment explanation
Indices: 4605847--4605933 Score: 88
Period size: 27 Copynumber: 3.2 Consensus size: 27
4605837 AGCACCGCCA
*
4605847 CCACAACCGGAACCA-TCGGCAGAAACG
1 CCACAACCCGAACCACT-GGCAGAAACG
* * *
4605874 TCACAACCCGAACCACTGGTAGCAACG
1 CCACAACCCGAACCACTGGCAGAAACG
* *
4605901 CCACAACCCGAACC-CGTGGCTGAAACA
1 CCACAACCCGAACCAC-TGGCAGAAACG
4605928 CCACAA
1 CCACAA
4605934 GCTGATGTTG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
26 1 0.02
27 47 0.96
28 1 0.02
ACGTcount: A:0.36, C:0.39, G:0.18, T:0.07
Consensus pattern (27 bp):
CCACAACCCGAACCACTGGCAGAAACG
Found at i:4606072 original size:24 final size:24
Alignment explanation
Indices: 4606045--4606103 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
4606035 TGTCGAAACA
4606045 TATGCTCCGACAAATCATCCAATT
1 TATGCTCCGACAAATCATCCAATT
* *
4606069 TATGCTCCGACATATCCTCCAATT
1 TATGCTCCGACAAATCATCCAATT
4606093 TATGCTCCGAC
1 TATGCTCCGAC
4606104 GTACGCTACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.27, C:0.32, G:0.10, T:0.31
Consensus pattern (24 bp):
TATGCTCCGACAAATCATCCAATT
Found at i:4609720 original size:13 final size:13
Alignment explanation
Indices: 4609704--4609729 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4609694 ATAGAGTTAG
4609704 AGCATAGGACTAT
1 AGCATAGGACTAT
4609717 AGCATAGGACTAT
1 AGCATAGGACTAT
4609730 CTTTCTACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
AGCATAGGACTAT
Found at i:4611440 original size:13 final size:14
Alignment explanation
Indices: 4611415--4611444 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
4611405 TTCATTTAAA
4611415 TTATTAGAAAAATT
1 TTATTAGAAAAATT
4611429 TTATTA-AAAAATT
1 TTATTAGAAAAATT
4611442 TTA
1 TTA
4611445 AATAATTCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
TTATTAGAAAAATT
Found at i:4612336 original size:20 final size:20
Alignment explanation
Indices: 4612308--4612345 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4612298 CTATTACTAT
*
4612308 TTTTGAATTTCTTACAAAAA
1 TTTTAAATTTCTTACAAAAA
4612328 TTTTAAATTTCTTACAAA
1 TTTTAAATTTCTTACAAA
4612346 TTTACTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (20 bp):
TTTTAAATTTCTTACAAAAA
Found at i:4612423 original size:20 final size:20
Alignment explanation
Indices: 4612390--4612428 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4612380 TCTAATAAAT
** *
4612390 TTACTAAACCTCTTGCAAAA
1 TTACTAAAAATCTTACAAAA
4612410 TTACTAAAAATCTTACAAA
1 TTACTAAAAATCTTACAAA
4612429 TTTATAGCGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.31
Consensus pattern (20 bp):
TTACTAAAAATCTTACAAAA
Found at i:4620409 original size:91 final size:88
Alignment explanation
Indices: 4620279--4620446 Score: 239
Period size: 91 Copynumber: 1.9 Consensus size: 88
4620269 TACCAAAAAA
**
4620279 AAGTCTAGGTCTCAATGTAAGAACAATTGCCAAGTTTAGGGTCTAATTTAGACCAAAAAAAAGCT
1 AAGTCTAGGTCTCAATGTAAGAACAATTGCCAAGTTTAGGACCTAATTTAGA--AAAAAAAAGC-
*
4620344 TAGACCCCAATGTGGAAAATGTTACC
63 TAAACCCCAATGTGGAAAATGTTACC
* *
4620370 AAGTCTAGGTCTCAATGTGAGAACAATT-CTCAAGTTTAGGACCTAATTTAGAAAAAAAAATCTA
1 AAGTCTAGGTCTCAATGTAAGAACAATTGC-CAAGTTTAGGACCTAATTTAGAAAAAAAAAGCTA
*
4620434 AACCCCAGTGTGG
65 AACCCCAATGTGG
4620447 GAGAAGTTGC
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
88 13 0.19
89 9 0.13
90 1 0.01
91 47 0.67
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (88 bp):
AAGTCTAGGTCTCAATGTAAGAACAATTGCCAAGTTTAGGACCTAATTTAGAAAAAAAAAGCTAA
ACCCCAATGTGGAAAATGTTACC
Found at i:4620865 original size:26 final size:26
Alignment explanation
Indices: 4620836--4620916 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
4620826 ATACAAATTA
4620836 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
* *
4620862 ATAATGGATTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
*
4620888 ATAAT-GGTTAGGTAAATGTTTCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
4620913 ATAA
1 ATAA
4620917 GAATATCATG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 21 0.42
26 29 0.58
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.36
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATGTTCCATG
Found at i:4630693 original size:35 final size:35
Alignment explanation
Indices: 4630646--4630716 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
4630636 TAAGTTACTT
*
4630646 TCATCCTATAAGTCATTATCTCATTTAAAAAAAAA
1 TCATCCTATAAGTCATAATCTCATTTAAAAAAAAA
*
4630681 TCATCCTGTAAGTCATAATCTCATTTAAAAAAAAA
1 TCATCCTATAAGTCATAATCTCATTTAAAAAAAAA
4630716 T
1 T
4630717 TTTACTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.45, C:0.17, G:0.04, T:0.34
Consensus pattern (35 bp):
TCATCCTATAAGTCATAATCTCATTTAAAAAAAAA
Found at i:4630903 original size:18 final size:18
Alignment explanation
Indices: 4630880--4630984 Score: 88
Period size: 18 Copynumber: 5.5 Consensus size: 18
4630870 ATAAGTGCTA
4630880 AACTGAAGCCCGAAGGCT
1 AACTGAAGCCCGAAGGCT
* *
4630898 AACTGAAGCACGCAAGTGTT
1 AACTGAAGCCCG-AAG-GCT
*
4630918 AAACGGAAGCCCGAAGGCT
1 -AACTGAAGCCCGAAGGCT
*
4630937 AACTAAAGCACAC-AAGTGCT
1 AACTGAAGC-C-CGAAG-GCT
4630957 AGAC-GAAAGCCCGAAGGCT
1 A-ACTG-AAGCCCGAAGGCT
4630976 AACTGAAGC
1 AACTGAAGC
4630985 TCATCAGAGC
Statistics
Matches: 69, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
18 24 0.35
19 15 0.22
20 14 0.20
21 16 0.23
ACGTcount: A:0.38, C:0.25, G:0.26, T:0.11
Consensus pattern (18 bp):
AACTGAAGCCCGAAGGCT
Found at i:4630915 original size:39 final size:38
Alignment explanation
Indices: 4630867--4630984 Score: 164
Period size: 39 Copynumber: 3.0 Consensus size: 38
4630857 TTAGCCGAAA
*
4630867 CACATAAGTGCTAAACTGAAGCCCGAAGGCTAACTGAAG
1 CACACAAGTGCTAAAC-GAAGCCCGAAGGCTAACTGAAG
* * *
4630906 CACGCAAGTGTTAAACGGAAGCCCGAAGGCTAACTAAAG
1 CACACAAGTGCTAAAC-GAAGCCCGAAGGCTAACTGAAG
*
4630945 CACACAAGTGCTAGACGAAAGCCCGAAGGCTAACTGAAG
1 CACACAAGTGCTAAACG-AAGCCCGAAGGCTAACTGAAG
4630984 C
1 C
4630985 TCATCAGAGC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 68 0.99
ACGTcount: A:0.38, C:0.25, G:0.25, T:0.13
Consensus pattern (38 bp):
CACACAAGTGCTAAACGAAGCCCGAAGGCTAACTGAAG
Found at i:4632745 original size:12 final size:12
Alignment explanation
Indices: 4632728--4632752 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4632718 AGGTTCCAAA
4632728 ACCACCGTTTCT
1 ACCACCGTTTCT
4632740 ACCACCGTTTCT
1 ACCACCGTTTCT
4632752 A
1 A
4632753 GTATCACTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.40, G:0.08, T:0.32
Consensus pattern (12 bp):
ACCACCGTTTCT
Found at i:4635646 original size:3 final size:3
Alignment explanation
Indices: 4635640--4635672 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
4635630 TTTTTTCTCC
4635640 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4635673 ATTTTTGTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:4650616 original size:29 final size:29
Alignment explanation
Indices: 4650574--4650629 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
4650564 GGCAAAAGCA
4650574 CTCAAGTAGTATACAATGAAATTATTTGC
1 CTCAAGTAGTATACAATGAAATTATTTGC
4650603 CTCAAGTAGTATACAATGAAATTATTT
1 CTCAAGTAGTATACAATGAAATTATTT
4650630 TTTTTTCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (29 bp):
CTCAAGTAGTATACAATGAAATTATTTGC
Found at i:4652318 original size:18 final size:18
Alignment explanation
Indices: 4652295--4652337 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
4652285 ATTCAAAGTG
4652295 TAATTAATTTAAA-ATATT
1 TAATTAA-TTAAATATATT
*
4652313 TAATTAATTAAATTTATT
1 TAATTAATTAAATATATT
4652331 TAATTAA
1 TAATTAA
4652338 AAACCTATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATTAATTAAATATATT
Found at i:4660339 original size:5 final size:5
Alignment explanation
Indices: 4660318--4660370 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
4660308 TGTTAAAATA
* *
4660318 TATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT TATAT
4660366 TATAT
1 TATAT
4660371 AAATAAGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 6 0.15
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:4660349 original size:10 final size:9
Alignment explanation
Indices: 4660315--4660371 Score: 59
Period size: 8 Copynumber: 6.6 Consensus size: 9
4660305 ATGTGTTAAA
4660315 ATATATATT
1 ATATATATT
*
4660324 AAAT-TATT
1 ATATATATT
4660332 AT-TATATT
1 ATATATATT
4660340 ATAGTATATT
1 ATA-TATATT
4660350 ATAT-TA-T
1 ATATATATT
4660357 ATATTATATT
1 ATA-TATATT
4660367 ATATA
1 ATATA
4660372 AATAAGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.35
9 8 0.20
10 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATATT
Found at i:4660361 original size:12 final size:12
Alignment explanation
Indices: 4660316--4660371 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
4660306 TGTGTTAAAA
*
4660316 TATATATTAAAT
1 TATATATTATAT
4660328 TAT-TATTATATT
1 TATATATTATA-T
4660340 ATAGTATATTATAT
1 -TA-TATATTATAT
4660354 TATATATTATAT
1 TATATATTATAT
4660366 TATATA
1 TATATA
4660372 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:4662076 original size:39 final size:39
Alignment explanation
Indices: 4661966--4662100 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
4661956 GACCTCGAGT
* * * *
4661966 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
4662007 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
4662045 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
4662084 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
4662101 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:4662240 original size:18 final size:19
Alignment explanation
Indices: 4662219--4662259 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
4662209 AATGAAATGA
4662219 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
4662237 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
4662256 GAAA
1 GAAA
4662260 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:4664675 original size:43 final size:42
Alignment explanation
Indices: 4664566--4664837 Score: 162
Period size: 43 Copynumber: 6.3 Consensus size: 42
4664556 CTGACACCGT
* * * * *
4664566 AGTGCATCATCGGATCAACTGAACG-AAGTATACTGGTACCTA
1 AGTGCATCATCGGATGAACCGAA-GAAATTATACTGGCACATA
4664608 TAGTGCATCATCGG--GCAAGCCGAAGAAATTATACTGGCACATA
1 -AGTGCATCATCGGATG-AA-CCGAAGAAATTATACTGGCACATA
* ** *
4664651 AGGTGCATCATCGGATGAAGCGAAGTGATCATACTGGCACATA
1 A-GTGCATCATCGGATGAACCGAAGAAATTATACTGGCACATA
* * * * * * *
4664694 GGTGCATCGTAGGATAAACCAAAGCAAA-TATATTGGAACACGTA
1 AGTGCATCATCGGATGAACCGAAG-AAATTATACTGG--CACATA
* * *
4664738 AGTGCATCATCAGATGAACCGAA-ACAAATATACTGGCACATGC
1 AGTGCATCATCGGATGAACCGAAGA-AATTATACTGGCACAT-A
* * * *
4664781 AGTGCATCATCAGATAAACCAAAGTAAA-TATATTGGCATACGA-A
1 AGTGCATCATCGGATGAACCGAAG-AAATTATACTGGC--AC-ATA
4664825 AGTGCATCATCGG
1 AGTGCATCATCGG
4664838 CTAAATCAAA
Statistics
Matches: 178, Mismatches: 34, Indels: 33
0.73 0.14 0.13
Matches are distributed among these distances:
42 33 0.19
43 95 0.53
44 45 0.25
45 4 0.02
46 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.21
Consensus pattern (42 bp):
AGTGCATCATCGGATGAACCGAAGAAATTATACTGGCACATA
Found at i:4664743 original size:86 final size:86
Alignment explanation
Indices: 4664653--4664837 Score: 223
Period size: 87 Copynumber: 2.1 Consensus size: 86
4664643 GGCACATAAG
* *** *
4664653 GTGCATCATCGGATGAAGCG-AAGTGATCATACTGGCACAT-AGGTGCATCGT-AGGATAAACCA
1 GTGCATCATCGGATGAACCGAAACAAAT-ATACTGGCACATGA-GTGCATCATCA-GATAAACCA
*
4664715 AAGCAAATATATTGGAACACGTAA
63 AAGCAAATATATTGGAACACGAAA
*
4664739 GTGCATCATCAGATGAACCGAAACAAATATACTGGCACATGCAGTGCATCATCAGATAAACCAAA
1 GTGCATCATCGGATGAACCGAAACAAATATACTGGCACATG-AGTGCATCATCAGATAAACCAAA
* * *
4664804 GTAAATATATTGGCATACGAAA
65 GCAAATATATTGGAACACGAAA
4664826 GTGCATCATCGG
1 GTGCATCATCGG
4664838 CTAAATCAAA
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
86 30 0.36
87 52 0.62
88 2 0.02
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (86 bp):
GTGCATCATCGGATGAACCGAAACAAATATACTGGCACATGAGTGCATCATCAGATAAACCAAAG
CAAATATATTGGAACACGAAA
Found at i:4664766 original size:44 final size:43
Alignment explanation
Indices: 4664706--4664835 Score: 163
Period size: 43 Copynumber: 3.0 Consensus size: 43
4664696 TGCATCGTAG
*
4664706 GATAAACCAAAGCAAATATATTGGAACACGTAAGTGCATCATCA
1 GATAAACCAAAGCAAATATATTGGCACACG-AAGTGCATCATCA
* * * *
4664750 GATGAACCGAAA-CAAATATACTGGCACATGCAGTGCATCATCA
1 GATAAACC-AAAGCAAATATATTGGCACACGAAGTGCATCATCA
* *
4664793 GATAAACCAAAGTAAATATATTGGCATACGAAAGTGCATCATC
1 GATAAACCAAAGCAAATATATTGGCACACG-AAGTGCATCATC
4664836 GGCTAAATCA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 3 0.04
43 33 0.46
44 33 0.46
45 3 0.04
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (43 bp):
GATAAACCAAAGCAAATATATTGGCACACGAAGTGCATCATCA
Found at i:4665583 original size:20 final size:20
Alignment explanation
Indices: 4665558--4665605 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
4665548 AAGATCAGCC
*
4665558 AATTTTTTATAGTCCCTCAT
1 AATTTTTTATACTCCCTCAT
** *
4665578 AATTTTTGGTACTTCCTCAT
1 AATTTTTTATACTCCCTCAT
4665598 AATTTTTT
1 AATTTTTT
4665606 GGTATTATCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.06, T:0.54
Consensus pattern (20 bp):
AATTTTTTATACTCCCTCAT
Found at i:4665604 original size:21 final size:21
Alignment explanation
Indices: 4665572--4665625 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 21
4665562 TTTTATAGTC
4665572 CCTCATAA-TTTTTGGTACTT-
1 CCTCATAATTTTTTGGTA-TTA
4665592 CCTCATAATTTTTTGGTATTA
1 CCTCATAATTTTTTGGTATTA
*
4665613 TCTCATAATTTTT
1 CCTCATAATTTTT
4665626 GATACTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 10 0.32
21 21 0.68
ACGTcount: A:0.22, C:0.17, G:0.07, T:0.54
Consensus pattern (21 bp):
CCTCATAATTTTTTGGTATTA
Found at i:4665626 original size:20 final size:20
Alignment explanation
Indices: 4665572--4665671 Score: 87
Period size: 20 Copynumber: 5.0 Consensus size: 20
4665562 TTTTATAGTC
4665572 CCTCATAATTTTTGGTACTT
1 CCTCATAATTTTTGGTACTT
4665592 CCTCATAATTTTTTGGTA-TT
1 CCTCATAA-TTTTTGGTACTT
* *
4665612 ATCTCATAATTTTTGATACTT
1 -CCTCATAATTTTTGGTACTT
** * * * *
4665633 ATTCAGAAATTTTGTTACTC
1 CCTCATAATTTTTGGTACTT
*
4665653 CCTCGT-ATTTTTGGTACTT
1 CCTCATAATTTTTGGTACTT
4665672 TCAAATAATT
Statistics
Matches: 62, Mismatches: 15, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
19 10 0.16
20 34 0.55
21 18 0.29
ACGTcount: A:0.22, C:0.17, G:0.10, T:0.51
Consensus pattern (20 bp):
CCTCATAATTTTTGGTACTT
Found at i:4665634 original size:21 final size:21
Alignment explanation
Indices: 4665573--4665684 Score: 83
Period size: 20 Copynumber: 5.6 Consensus size: 21
4665563 TTTATAGTCC
*
4665573 CTCATAATTTTTGGTACTT-C
1 CTCATAATTTTTGGTACTTAT
4665593 CTCATAATTTTTTGGTA-TTAT
1 CTCATAA-TTTTTGGTACTTAT
*
4665614 CTCATAATTTTTGATACTTAT
1 CTCATAATTTTTGGTACTTAT
* * * **
4665635 -TCAGAAATTTTGTTAC-TCC
1 CTCATAATTTTTGGTACTTAT
*
4665654 CTCGT-ATTTTTGGTACTT-T
1 CTCATAATTTTTGGTACTTAT
**
4665673 CAAATAATTTTT
1 CTCATAATTTTT
4665685 TTGTATTCCC
Statistics
Matches: 71, Mismatches: 15, Indels: 12
0.72 0.15 0.12
Matches are distributed among these distances:
19 12 0.17
20 39 0.55
21 20 0.28
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.52
Consensus pattern (21 bp):
CTCATAATTTTTGGTACTTAT
Found at i:4665721 original size:19 final size:19
Alignment explanation
Indices: 4665694--4665732 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
4665684 TTTGTATTCC
*
4665694 CTTATAATTTGTAGTATTT
1 CTTAGAATTTGTAGTATTT
* *
4665713 CTTAGAATTTTTGGTATTT
1 CTTAGAATTTGTAGTATTT
4665732 C
1 C
4665733 CAGGTAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.23, C:0.08, G:0.13, T:0.56
Consensus pattern (19 bp):
CTTAGAATTTGTAGTATTT
Found at i:4665927 original size:20 final size:20
Alignment explanation
Indices: 4665904--4665947 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
4665894 TTTTATATTC
4665904 CCTTATAAGTTTTT-GTACTT
1 CCTTA-AAGTTTTTGGTACTT
* *
4665924 CCTTAAATTTTTTGGTATTT
1 CCTTAAAGTTTTTGGTACTT
4665944 CCTT
1 CCTT
4665948 CTTCCTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.18, C:0.16, G:0.09, T:0.57
Consensus pattern (20 bp):
CCTTAAAGTTTTTGGTACTT
Found at i:4666886 original size:20 final size:20
Alignment explanation
Indices: 4666861--4666913 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
4666851 TTGATAACAT
*
4666861 ATTATGAAGGAGTACCAATA
1 ATTATGAAGGAGTACCAAAA
* * * *
4666881 ATTATGTAGAAATACTAAAA
1 ATTATGAAGGAGTACCAAAA
4666901 ATTATGAAGGAGT
1 ATTATGAAGGAGT
4666914 GATATAAGAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (20 bp):
ATTATGAAGGAGTACCAAAA
Found at i:4676548 original size:22 final size:22
Alignment explanation
Indices: 4676523--4676568 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
4676513 TCGTATGGTA
4676523 ATATATTCAAAATTA-AAAAAAC
1 ATATATT-AAAATTAGAAAAAAC
*
4676545 ATATATTAACATTAGGAAAAAAC
1 ATATATTAAAATTA-GAAAAAAC
4676568 A
1 A
4676569 AAAAACAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 7 0.33
23 8 0.38
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (22 bp):
ATATATTAAAATTAGAAAAAAC
Found at i:4678691 original size:30 final size:31
Alignment explanation
Indices: 4678651--4678720 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
4678641 AGTTTATATC
* *
4678651 TTTATAATTTTTAAAG-GATTAAATCA-AATT
1 TTTATTATTTTTAAAGAGATGAAATCACAA-T
* *
4678681 TTTATTATTTTTGAAGAGATGAAATTACAAT
1 TTTATTATTTTTAAAGAGATGAAATCACAAT
4678712 TTTATTATT
1 TTTATTATT
4678721 ACCAATTTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 14 0.41
31 18 0.53
32 2 0.06
ACGTcount: A:0.39, C:0.03, G:0.09, T:0.50
Consensus pattern (31 bp):
TTTATTATTTTTAAAGAGATGAAATCACAAT
Found at i:4682938 original size:21 final size:23
Alignment explanation
Indices: 4682896--4682940 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
4682886 TAAAATGATA
*
4682896 AAATACTATTTTTAAGTAATATT
1 AAATAATATTTTTAAGTAATATT
4682919 AAATAATATTTTT-A-TAATATT
1 AAATAATATTTTTAAGTAATATT
4682940 A
1 A
4682941 TTTATATACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.38
22 1 0.05
23 12 0.57
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
AAATAATATTTTTAAGTAATATT
Found at i:4684608 original size:30 final size:27
Alignment explanation
Indices: 4684549--4684609 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 27
4684539 TTATGTTATA
*
4684549 AAATAATACTATATAATTATATATGTT
1 AAATAATACTATATAATTATATATATT
* *
4684576 AAATAATAATTATATATTTATATTTATATT
1 AAATAAT-ACTATATAATTATA--TATATT
4684606 AAAT
1 AAAT
4684610 CACTAACCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 7 0.25
28 12 0.43
30 9 0.32
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (27 bp):
AAATAATACTATATAATTATATATATT
Found at i:4686964 original size:2 final size:2
Alignment explanation
Indices: 4686951--4686986 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
4686941 ATTAGGTGTA
*
4686951 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4686987 GTTAGAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4691443 original size:9 final size:9
Alignment explanation
Indices: 4691407--4691503 Score: 58
Period size: 9 Copynumber: 10.6 Consensus size: 9
4691397 AAAATTTAGA
*
4691407 AAAATGATT
1 AAAATTATT
4691416 AAAATTGATAT
1 AAAATT-AT-T
*
4691427 AAACTTATT
1 AAAATTATT
4691436 AAAATTA-T
1 AAAATTATT
4691444 AAATATTA-T
1 AAA-ATTATT
4691453 AAAA-TATAT
1 AAAATTAT-T
* *
4691462 AAAATTCTA
1 AAAATTATT
4691471 ATAAATTA-T
1 A-AAATTATT
*
4691480 AAAATTAAT
1 AAAATTATT
*
4691489 AAATTTATTT
1 AAAATTA-TT
4691499 AAAAT
1 AAAAT
4691504 AAAAAACGTA
Statistics
Matches: 69, Mismatches: 10, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
7 2 0.03
8 11 0.16
9 34 0.49
10 16 0.23
11 6 0.09
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (9 bp):
AAAATTATT
Found at i:4691453 original size:26 final size:26
Alignment explanation
Indices: 4691424--4691496 Score: 67
Period size: 26 Copynumber: 2.7 Consensus size: 26
4691414 TTAAAATTGA
*
4691424 TATAAACTTATTAAAATTATAA-ATAT
1 TATAAA-TTATTAAAATTATAATAAAT
* *
4691450 TATAAAATATATAAAATTCTAATAAAT
1 TATAAATTAT-TAAAATTATAATAAAT
* *
4691477 TATAAAATTAATAAATTTAT
1 TAT-AAATTATTAAAATTAT
4691497 TTAAAATAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
25 3 0.08
26 16 0.43
27 13 0.35
28 5 0.14
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (26 bp):
TATAAATTATTAAAATTATAATAAAT
Found at i:4691460 original size:7 final size:8
Alignment explanation
Indices: 4691424--4691496 Score: 65
Period size: 9 Copynumber: 8.4 Consensus size: 8
4691414 TTAAAATTGA
*
4691424 TATAAACT
1 TATAAAAT
4691432 TATTAAAAT
1 TA-TAAAAT
4691441 TATAAATAT
1 TATAAA-AT
4691450 TATAAAAT
1 TATAAAAT
4691458 ATATAAAAT
1 -TATAAAAT
*
4691467 TCTAATAAAT
1 TAT-A-AAAT
4691477 TATAAAAT
1 TATAAAAT
*
4691485 TAATAAATT
1 T-ATAAAAT
4691494 TAT
1 TAT
4691497 TTAAAATAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
8 17 0.31
9 32 0.58
10 6 0.11
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (8 bp):
TATAAAAT
Found at i:4691490 original size:27 final size:26
Alignment explanation
Indices: 4691424--4691496 Score: 76
Period size: 27 Copynumber: 2.8 Consensus size: 26
4691414 TTAAAATTGA
* * *
4691424 TATAAACTTATTAAAATTATAAATAT
1 TATAAAATTAATAAAATTATAAAAAT
*
4691450 TATAAAA-TATATAAAATTCTAATAAAT
1 TATAAAATTA-ATAAAATTATAA-AAAT
*
4691477 TATAAAATTAATAAATTTAT
1 TATAAAATTAATAAAATTAT
4691497 TTAAAATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
25 2 0.05
26 16 0.42
27 18 0.47
28 2 0.05
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (26 bp):
TATAAAATTAATAAAATTATAAAAAT
Found at i:4692505 original size:181 final size:181
Alignment explanation
Indices: 4692215--4692588 Score: 554
Period size: 181 Copynumber: 2.1 Consensus size: 181
4692205 CGGCTGAGAC
* * *
4692215 ACACGCCCGTGTGCTCAAGGGACACGCCTGTGTGACCATAGGACATGCCATTGCTTTAAGCCGTG
1 ACACGCCCGTGTGCTCAAGGGACACGCCTGTGTGACCATAGGACACGCCAGTGCTATAAGCCGTG
* * * *
4692280 TCTGACCCACTGTAACTCTCTGACTTGTACCACACGGCTAGCCACATGCCCG-TGTGCTAGGCCA
66 TCTGACCCACTGTAACTCTCTGACTTGTACCACACGACTAGCCACACG-CAGTTGTGCTAGACCA
* * *
4692344 TGTAATCAATTTAATTTTCTAAAATTAGATGTAAGTTTCACACGGCCAATAT
130 TATAATCAATTTAATTTTCTAAAATTAGATGCAAGTTTCACACGGCCAAAAT
* * * *
4692396 ACATGCCCGTGTGGTCAAGGGACACGTCTGTGTGACCATAGGACACGTCC-GTGCTATAAGCTGT
1 ACACGCCCGTGTGCTCAAGGGACACGCCTGTGTGACCATAGGACACG-CCAGTGCTATAAGCCGT
* *
4692460 GTCTGACCCAGTGTAACTCTCTGACTTGTACCACACGACTAGCCACACGCAGTTGTGCTAGACCG
65 GTCTGACCCACTGTAACTCTCTGACTTGTACCACACGACTAGCCACACGCAGTTGTGCTAGACCA
*
4692525 TATGATCAATTTAATTTTCTAAAATTAGATGCAAGTTTCACACGGCCAAAAT
130 TATAATCAATTTAATTTTCTAAAATTAGATGCAAGTTTCACACGGCCAAAAT
*
4692577 ACACACCCGTGT
1 ACACGCCCGTGT
4692589 TCTGGGTCGT
Statistics
Matches: 172, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
180 2 0.01
181 168 0.98
182 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (181 bp):
ACACGCCCGTGTGCTCAAGGGACACGCCTGTGTGACCATAGGACACGCCAGTGCTATAAGCCGTG
TCTGACCCACTGTAACTCTCTGACTTGTACCACACGACTAGCCACACGCAGTTGTGCTAGACCAT
ATAATCAATTTAATTTTCTAAAATTAGATGCAAGTTTCACACGGCCAAAAT
Found at i:4701989 original size:19 final size:19
Alignment explanation
Indices: 4701965--4702003 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
4701955 AGGCTGAATC
4701965 ATTGCTGCAACTTAATTTA
1 ATTGCTGCAACTTAATTTA
4701984 ATTGCTGCAACTTAATTTA
1 ATTGCTGCAACTTAATTTA
4702003 A
1 A
4702004 CTATCTGTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.41
Consensus pattern (19 bp):
ATTGCTGCAACTTAATTTA
Found at i:4707972 original size:22 final size:22
Alignment explanation
Indices: 4707947--4707991 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
4707937 TTTAATAAAA
4707947 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
4707969 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
4707991 A
1 A
4707992 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:4712553 original size:22 final size:22
Alignment explanation
Indices: 4712528--4712572 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
4712518 TTTAATAAAA
4712528 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
4712550 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
4712572 A
1 A
4712573 CAGAAACTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:4727023 original size:20 final size:21
Alignment explanation
Indices: 4726986--4727024 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
4726976 ATCATAACAA
*
4726986 GTTTTTATGATTAAATATATT
1 GTTTTTATGAATAAATATATT
*
4727007 GTTTTTAT-AATATATATA
1 GTTTTTATGAATAAATATA
4727025 ATGAATACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (21 bp):
GTTTTTATGAATAAATATATT
Found at i:4729093 original size:20 final size:20
Alignment explanation
Indices: 4729065--4729104 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
4729055 CATTTTAAAT
*
4729065 TTTTTAAAA-TTTAATAATAA
1 TTTTAAAAACTTTAA-AATAA
4729085 TTTTAAAAACTTTAAAATAA
1 TTTTAAAAACTTTAAAATAA
4729105 ATATAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTTAAAAACTTTAAAATAA
Found at i:4729111 original size:20 final size:20
Alignment explanation
Indices: 4729070--4729111 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
4729060 TAAATTTTTT
* *
4729070 AAAATTTAATAATAATTTTA
1 AAAATTTAATAATAAATATA
4729090 AAAACTTTAA-AATAAATATA
1 AAAA-TTTAATAATAAATATA
4729110 AA
1 AA
4729112 TTATTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAATTTAATAATAAATATA
Found at i:4729974 original size:21 final size:21
Alignment explanation
Indices: 4729950--4729989 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
4729940 ACTGACCAAT
*
4729950 CCATTGAAGATTTTTATGTAA
1 CCATTGAAGATATTTATGTAA
4729971 CCATTGAAGATATTTATGT
1 CCATTGAAGATATTTATGT
4729990 TAAGTTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (21 bp):
CCATTGAAGATATTTATGTAA
Found at i:4733805 original size:16 final size:16
Alignment explanation
Indices: 4733779--4733811 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4733769 TTTATCCAGC
4733779 TTTTGTTTAAT-TTTA
1 TTTTGTTTAATATTTA
4733794 TTTTGTTTTAATATTTA
1 TTTTG-TTTAATATTTA
4733811 T
1 T
4733812 GAGCATGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 6 0.38
17 5 0.31
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (16 bp):
TTTTGTTTAATATTTA
Found at i:4733867 original size:20 final size:21
Alignment explanation
Indices: 4733839--4733878 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4733829 ACATAAAATA
4733839 TTTAAAGA-TATCTAATATTG
1 TTTAAAGATTATCTAATATTG
* *
4733859 TTTATAGATTTTCTAATATT
1 TTTAAAGATTATCTAATATT
4733879 TCTTTTGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (21 bp):
TTTAAAGATTATCTAATATTG
Found at i:4735144 original size:26 final size:26
Alignment explanation
Indices: 4735108--4735157 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
4735098 CATTTATTAC
4735108 ATTGTATATATATAAGAAAAACAAAT
1 ATTGTATATATATAAGAAAAACAAAT
4735134 ATTGTATATATATAAGAAAAACAA
1 ATTGTATATATATAAGAAAAACAA
4735158 CAATTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.58, C:0.04, G:0.08, T:0.30
Consensus pattern (26 bp):
ATTGTATATATATAAGAAAAACAAAT
Found at i:4736961 original size:14 final size:12
Alignment explanation
Indices: 4736911--4736972 Score: 54
Period size: 12 Copynumber: 5.0 Consensus size: 12
4736901 TGTGTCTTTA
* *
4736911 ATATACTTATGT
1 ATATATTTATAT
4736923 AT-TATATTATAT
1 ATATAT-TTATAT
*
4736935 ATATATTTTTAT
1 ATATATTTATAT
4736947 ATACTATTTCATAT
1 ATA-TATTT-ATAT
*
4736961 ATATACTTATAT
1 ATATATTTATAT
4736973 TATCCTTATT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
11 2 0.05
12 21 0.51
13 12 0.29
14 6 0.15
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (12 bp):
ATATATTTATAT
Found at i:4736970 original size:24 final size:24
Alignment explanation
Indices: 4736911--4736972 Score: 63
Period size: 26 Copynumber: 2.5 Consensus size: 24
4736901 TGTGTCTTTA
* *
4736911 ATATACTTATGTATTATATTATAT
1 ATATACTTATATACTATATTATAT
*
4736935 ATATATTTTTATATACTAT-TTCATAT
1 ATATA--CTTATATACTATATT-ATAT
4736961 ATATACTTATAT
1 ATATACTTATAT
4736973 TATCCTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
24 11 0.35
25 2 0.06
26 18 0.58
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (24 bp):
ATATACTTATATACTATATTATAT
Found at i:4737038 original size:3 final size:3
Alignment explanation
Indices: 4736978--4737022 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
4736968 TATATTATCC
4736978 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4737023 ATCTATATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:4737041 original size:12 final size:12
Alignment explanation
Indices: 4736925--4737041 Score: 55
Period size: 12 Copynumber: 9.3 Consensus size: 12
4736915 ACTTATGTAT
*
4736925 TATATTATA-TA
1 TATATTTTATTA
4736936 TATATTTT-TATA
1 TATATTTTAT-TA
*
4736948 TACTATTTCATATA
1 TA-TATTTTAT-TA
*
4736962 TATACTTATATTA
1 TATA-TTTTATTA
*
4736975 TCCTTATTATTATTA
1 T--ATATT-TTATTA
4736990 T-TATTATTATTA
1 TATATT-TTATTA
4737002 T-TATTATTATTA
1 TATATT-TTATTA
* *
4737014 T-TATTATTAATC
1 TATATT-TTATTA
4737026 TATATTTTATTA
1 TATATTTTATTA
4737038 TATA
1 TATA
4737042 CGTATAGACA
Statistics
Matches: 87, Mismatches: 10, Indels: 17
0.76 0.09 0.15
Matches are distributed among these distances:
11 7 0.08
12 46 0.53
13 14 0.16
14 12 0.14
15 8 0.09
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (12 bp):
TATATTTTATTA
Found at i:4737239 original size:2 final size:2
Alignment explanation
Indices: 4737232--4737262 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4737222 TATTATTATT
4737232 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4737263 TTTTTTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4739532 original size:23 final size:22
Alignment explanation
Indices: 4739506--4739549 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
4739496 TTTATTGTGT
4739506 TTAGGGTTTTAA-GTTTAATTAAA
1 TTAGGG-TTTAATG-TTAATTAAA
4739529 TTAGGGTTTAATGTTAATTAA
1 TTAGGGTTTAATGTTAATTAA
4739550 TTAAATTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.48
Consensus pattern (22 bp):
TTAGGGTTTAATGTTAATTAAA
Found at i:4739722 original size:22 final size:23
Alignment explanation
Indices: 4739682--4739725 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
4739672 GTTTAGGGTT
*
4739682 TTAGGGTTTTAGGGCTAATTAAA
1 TTAGGGTTTTAAGGCTAATTAAA
*
4739705 TTAGGG-TTTAAGGTTAATTAA
1 TTAGGGTTTTAAGGCTAATTAA
4739726 TTAAATTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.32, C:0.02, G:0.25, T:0.41
Consensus pattern (23 bp):
TTAGGGTTTTAAGGCTAATTAAA
Found at i:4739906 original size:176 final size:166
Alignment explanation
Indices: 4739477--4739978 Score: 630
Period size: 176 Copynumber: 2.9 Consensus size: 166
4739467 TTACAATTCG
* * * *
4739477 GGTTTTAAGAGTTTAGGATTTTATTGTGTTTAGGGTTTTAAGTTTAATTAAATTAGGGTTTAATG
1 GGTTTTAAGAGTTTAGG-TTTTATTATGTTTAGGGTTTTAGGATTAATTAAATTAGGGTTTAAGG
* **
4739542 TTAATTAATTAAATTAACTATTAATTTAAAAAATCAATTAAATTAAAGTTCAGGGTTTTTATGGT
65 TTAATTAATTAAATTAACTATTAATTTAAAAAATTAATTAAATTAGGGTT-AGGGTTTTTATGGT
* *
4739607 TAACTAATTAAATTAGGATTTATGATTTTAGGGTTTAT
129 TAATTAATTAAATTAGGATTTATGATTTTAGGGTTTAA
* **
4739645 GGTTTTAAGAGCTTAGGGTTTTATTAAGTTTAGGGTTTTAGGGTTTTAGGGCTAATTAAATTAGG
1 GGTTTTAAGAGTTTA-GGTTTTATT-A---T---G-TTTAGGGTTTTAGGATTAATTAAATTAGG
*
4739710 GTTTAAGGTTAATTAATTAAATTAACTATTAATTTAAAAATAATTAATTAAATTAGGGATTAGGC
57 GTTTAAGGTTAATTAATTAAATTAACTATTAATTT-AAAA-AATTAATTAAATTAGGG-TTAGGG
*
4739775 TTTTTATGGTTAATTAATTAAATTAGGGTTTATGATTTTAGGGATTAGGGTTAA
119 TTTTTATGGTTAATTAATTAAATTAGGATTTATGATTTTAGGG--T----TTAA
*
4739829 GGTTTTTAAGAGTTTAGTGTTTTATTATGTTTATGGTTTTAGGATTAATTAAATTAGGGTTT-AG
1 GG-TTTTAAGAGTTTAG-GTTTTATTATGTTTAGGGTTTTAGGATTAATTAAATTAGGGTTTAAG
4739893 GTTAATTAATTAAATTAACTATTAATTTTAAAAAATTAATTAAATTAGGGTTTAGGGTTTTTA-G
64 GTTAATTAATTAAATTAACTATTAA-TTTAAAAAATTAATTAAATTAGGG-TTAGGGTTTTTATG
4739957 GTTTAATTAATTAAATTAGGAT
127 G-TTAATTAATTAAATTAGGAT
4739979 GCACTATCAG
Statistics
Matches: 292, Mismatches: 20, Indels: 37
0.84 0.06 0.11
Matches are distributed among these distances:
168 21 0.07
169 2 0.01
172 1 0.00
174 2 0.01
175 48 0.16
176 91 0.31
177 37 0.13
178 59 0.20
179 2 0.01
180 1 0.00
181 1 0.00
184 7 0.02
185 20 0.07
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.46
Consensus pattern (166 bp):
GGTTTTAAGAGTTTAGGTTTTATTATGTTTAGGGTTTTAGGATTAATTAAATTAGGGTTTAAGGT
TAATTAATTAAATTAACTATTAATTTAAAAAATTAATTAAATTAGGGTTAGGGTTTTTATGGTTA
ATTAATTAAATTAGGATTTATGATTTTAGGGTTTAA
Found at i:4740202 original size:126 final size:126
Alignment explanation
Indices: 4739974--4740290 Score: 562
Period size: 126 Copynumber: 2.5 Consensus size: 126
4739964 TAATTAAATT
*
4739974 AGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCATGTGGACGCTCTTTTGCTACAATAGT
1 AGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAGT
* *
4740039 ATCTGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCCAAAACGCTTCAAGC
66 ATCTGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAATGTCCAAAACGCTTCAAAC
* * *
4740100 AGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGAACGCTCTTTTGCTACAGTAGT
1 AGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAGT
* *
4740165 ATTTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAATGTCCAAAACGCTTCAAAC
66 ATCTGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAATGTCCAAAACGCTTCAAAC
4740226 AGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAGT
1 AGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAGT
4740291 TTCTATTTGG
Statistics
Matches: 180, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 180 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (126 bp):
AGGATGCACTATCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTGCTACAATAGT
ATCTGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAATGTCCAAAACGCTTCAAAC
Found at i:4741835 original size:52 final size:52
Alignment explanation
Indices: 4741672--4741837 Score: 183
Period size: 52 Copynumber: 3.1 Consensus size: 52
4741662 TCTTACACGG
* * * *
4741672 ATCACATATCATACCGATGCCATATCCCAGATATGGTCTTGTACGGAATCATATT
1 ATCACAT-T-ATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCATA-T
* * * *
4741727 ATCACATCACACCGATGCCATAGCCTAGCTATGGTCTTATACGGGAACGC-GA-
1 ATCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAA-GCATAT
* *
4741779 ATCACATTATATCGATGCCATAGCCCGGCTATGGTCTTATACGGAAGCATAT
1 ATCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCATAT
4741831 ATCACAT
1 ATCACAT
4741838 CTTTTCCGTC
Statistics
Matches: 93, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
50 2 0.02
51 5 0.05
52 44 0.47
53 29 0.31
54 5 0.05
55 8 0.09
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (52 bp):
ATCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGCATAT
Found at i:4745917 original size:9 final size:9
Alignment explanation
Indices: 4745887--4745917 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
4745877 ATTTATATTT
4745887 TATTAAAAA
1 TATTAAAAA
*
4745896 TATAAAAAA
1 TATTAAAAA
4745905 TATTAAAAA
1 TATTAAAAA
4745914 TATT
1 TATT
4745918 GCCTTATTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
TATTAAAAA
Found at i:4746434 original size:18 final size:18
Alignment explanation
Indices: 4746411--4746448 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
4746401 GAAAAAGAAA
*
4746411 ACATATAACGGTTAGGAT
1 ACATATAACGGCTAGGAT
*
4746429 ACATATAAGGGCTAGGAT
1 ACATATAACGGCTAGGAT
4746447 AC
1 AC
4746449 GCACTTGGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (18 bp):
ACATATAACGGCTAGGAT
Found at i:4747076 original size:7 final size:7
Alignment explanation
Indices: 4747064--4747089 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
4747054 AGTTATATAT
4747064 AATACTA
1 AATACTA
4747071 AATACTA
1 AATACTA
4747078 AATACTA
1 AATACTA
4747085 AATAC
1 AATAC
4747090 GAAACAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:4753116 original size:13 final size:14
Alignment explanation
Indices: 4753093--4753121 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
4753083 GGGAAGAACC
4753093 TTTCTTTTTTTTTT
1 TTTCTTTTTTTTTT
4753107 TTTCTTTTTTTTTT
1 TTTCTTTTTTTTTT
4753121 T
1 T
4753122 ATAGATTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (14 bp):
TTTCTTTTTTTTTT
Found at i:4753753 original size:32 final size:32
Alignment explanation
Indices: 4753716--4753776 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
4753706 TAAAATTTAT
* *
4753716 ATAATATCGAACCAATAACAAAGAATAATAAC
1 ATAATAGCGAAACAATAACAAAGAATAATAAC
* * *
4753748 ATAATAGCGAAATAGTAGCAAAGAATAAT
1 ATAATAGCGAAACAATAACAAAGAATAAT
4753777 GAGAAAACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.20
Consensus pattern (32 bp):
ATAATAGCGAAACAATAACAAAGAATAATAAC
Found at i:4758239 original size:17 final size:18
Alignment explanation
Indices: 4758206--4758239 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4758196 GGTTTAATAG
*
4758206 TTTTTAAAGTTTTTTTTT
1 TTTTTAAAGTTTCTTTTT
4758224 TTTTTAAA-TTTCTTTT
1 TTTTTAAAGTTTCTTTT
4758240 ATTAATCTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (18 bp):
TTTTTAAAGTTTCTTTTT
Found at i:4758605 original size:2 final size:2
Alignment explanation
Indices: 4758598--4758624 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
4758588 GTGCATATTA
4758598 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
4758625 AATGGGTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4759751 original size:3 final size:3
Alignment explanation
Indices: 4759743--4759803 Score: 51
Period size: 3 Copynumber: 21.7 Consensus size: 3
4759733 ATAAAAATAA
* * *
4759743 ATT ATT ATT ATT -TT -TT CTT ATT ATT -TT CTT GTT ATTT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT
4759786 ATT -TT ATT ATT ATT -TT AT
1 ATT ATT ATT ATT ATT ATT AT
4759804 AATTTTGTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
2 10 0.20
3 37 0.74
4 3 0.06
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.72
Consensus pattern (3 bp):
ATT
Found at i:4759771 original size:11 final size:11
Alignment explanation
Indices: 4759747--4759832 Score: 81
Period size: 11 Copynumber: 8.1 Consensus size: 11
4759737 AAATAAATTA
4759747 TTATTATT-TT
1 TTATTATTATT
*
4759757 TTCTTATTATT
1 TTATTATTATT
* *
4759768 TTCTTGTTA-T
1 TTATTATTATT
4759778 TTATTATTATT
1 TTATTATTATT
4759789 TTATTATTATT
1 TTATTATTATT
*
4759800 TTATAATT-TT
1 TTATTATTATT
* *
4759810 GTTGTTA-CATT
1 -TTATTATTATT
4759821 TTATTATTATT
1 TTATTATTATT
4759832 T
1 T
4759833 GGATATTATA
Statistics
Matches: 61, Mismatches: 10, Indels: 9
0.76 0.12 0.11
Matches are distributed among these distances:
10 22 0.36
11 39 0.64
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.71
Consensus pattern (11 bp):
TTATTATTATT
Found at i:4762784 original size:2 final size:2
Alignment explanation
Indices: 4762777--4762805 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4762767 TTAGGTAAAC
4762777 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4762806 AAATAATAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4763802 original size:18 final size:19
Alignment explanation
Indices: 4763773--4763808 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
4763763 AATAAACAAA
4763773 TTGCTCGTTTTTTCTTTCC
1 TTGCTCGTTTTTTCTTTCC
*
4763792 TTGCT-GTTTTTTGTTTC
1 TTGCTCGTTTTTTCTTTC
4763809 TTTCTTCTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.00, C:0.19, G:0.14, T:0.67
Consensus pattern (19 bp):
TTGCTCGTTTTTTCTTTCC
Found at i:4765849 original size:16 final size:16
Alignment explanation
Indices: 4765796--4765851 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
4765786 CGTTTGGTTT
*
4765796 ACTGTAATGGAATAGG
1 ACTGTAATGGAATAGA
*
4765812 ACTGTAATTGAATAGA
1 ACTGTAATGGAATAGA
*
4765828 GCTGTAATGGAATAGA
1 ACTGTAATGGAATAGA
*
4765844 ATTGTAAT
1 ACTGTAAT
4765852 TAGTAATTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.30
Consensus pattern (16 bp):
ACTGTAATGGAATAGA
Found at i:4766055 original size:26 final size:25
Alignment explanation
Indices: 4766006--4766056 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
4765996 ATGATTATTG
*
4766006 TTATTGTTATTAAATTTTAATAAAA
1 TTATTGTTAATAAATTTTAATAAAA
* *
4766031 TTATTGTTAAATATATTTTATTAAAA
1 TTATTGTT-AATAAATTTTAATAAAA
4766057 AATAATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (25 bp):
TTATTGTTAATAAATTTTAATAAAA
Found at i:4766116 original size:15 final size:15
Alignment explanation
Indices: 4766083--4766126 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
4766073 ATCATATTTT
* *
4766083 AATATAATTATTATTA
1 AATATAATT-TAATAA
4766099 AATATAATTTAATAA
1 AATATAATTTAATAA
*
4766114 AATAAAATTTAAT
1 AATATAATTTAAT
4766127 TTAATAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
AATATAATTTAATAA
Found at i:4766132 original size:15 final size:15
Alignment explanation
Indices: 4766095--4766133 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
4766085 TATAATTATT
*
4766095 ATTAAATATAATTTA
1 ATTAAATAAAATTTA
*
4766110 ATAAAATAAAATTTA
1 ATTAAATAAAATTTA
*
4766125 ATTTAATAA
1 ATTAAATAA
4766134 CATTCTTAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTAAATAAAATTTA
Found at i:4768874 original size:48 final size:48
Alignment explanation
Indices: 4768716--4768929 Score: 214
Period size: 48 Copynumber: 4.6 Consensus size: 48
4768706 TCCATCAAGT
* * *
4768716 CGATGCCATGTCCCAGACATGGTCTTACACTGACTA--TCAAAATCGAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACCTCTATA-CG-TGC
* * * *
4768765 CGATTCCATATCCCAGACATGGTCTTACACT---AGCTCTCACACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCT-ATACGTGC
*
4768811 CGATGTCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGC
* * *
4768859 CGATGCCATGTCCCAGACATGGTCTTATACTGACACATC--T-CGTAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGT-GC
4768905 CGATG-CATGTCCCAGACAT-GTCTTA
1 CGATGCCATGTCCCAGACATGGTCTTA
4768930 TACTAGTTTT
Statistics
Matches: 144, Mismatches: 14, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
44 6 0.04
45 18 0.12
46 37 0.26
47 4 0.03
48 45 0.31
49 34 0.24
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCTATACGTGC
Found at i:4774461 original size:26 final size:25
Alignment explanation
Indices: 4774426--4774476 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
4774416 ATTTATTATT
*
4774426 TTTTAATAAAATATATTTAACAATAA
1 TTTTAATAAAATATA-ATAACAATAA
* *
4774452 TTTTATTAAAATTTAATAACAATAA
1 TTTTAATAAAATATAATAACAATAA
4774477 CAATAATCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (25 bp):
TTTTAATAAAATATAATAACAATAA
Found at i:4774610 original size:44 final size:46
Alignment explanation
Indices: 4774555--4774650 Score: 126
Period size: 44 Copynumber: 2.1 Consensus size: 46
4774545 TATTACAACA
4774555 TCTATTCCATTCAACCAAACACA-AGAATT-CT-ATTACAGCTCTAT
1 TCTATTCCATTCAACCAAACA-ATAGAATTACTGATTACAGCTCTAT
* * * *
4774599 TCTATTTCATTCAACCAAATAATTGAATTACTGATTCCAGCTCTAT
1 TCTATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTAT
4774645 TCTATT
1 TCTATT
4774651 ATAGCTCTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
43 1 0.02
44 24 0.53
45 2 0.04
46 18 0.40
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (46 bp):
TCTATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTAT
Found at i:4774658 original size:16 final size:16
Alignment explanation
Indices: 4774636--4774677 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
4774626 TTACTGATTC
*
4774636 CAGCTCTATTCTATTA
1 CAGCTCTATTCAATTA
*
4774652 TAGCTCTATTCAATTA
1 CAGCTCTATTCAATTA
*
4774668 CAGCCCTATT
1 CAGCTCTATT
4774678 TCATTACAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.07, T:0.40
Consensus pattern (16 bp):
CAGCTCTATTCAATTA
Found at i:4775629 original size:16 final size:16
Alignment explanation
Indices: 4775610--4775641 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4775600 TCTAAATGAT
*
4775610 AATTGTTCTAAACATA
1 AATTGTCCTAAACATA
4775626 AATTGTCCTAAACATA
1 AATTGTCCTAAACATA
4775642 GTTGTTCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.06, T:0.34
Consensus pattern (16 bp):
AATTGTCCTAAACATA
Found at i:4779321 original size:34 final size:34
Alignment explanation
Indices: 4779283--4779350 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
4779273 AATACAAACA
4779283 ATCTTCTTCTACAAATCATTTTATGAAGATTCCC
1 ATCTTCTTCTACAAATCATTTTATGAAGATTCCC
4779317 ATCTTCTTCTACAAATCATTTTATGAAGATTCCC
1 ATCTTCTTCTACAAATCATTTTATGAAGATTCCC
4779351 CTTTCACAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.24, G:0.06, T:0.41
Consensus pattern (34 bp):
ATCTTCTTCTACAAATCATTTTATGAAGATTCCC
Found at i:4787214 original size:21 final size:21
Alignment explanation
Indices: 4787188--4787228 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
4787178 ATCTGCTCAA
* *
4787188 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
4787209 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
4787229 TCGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Done.