Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 176 of 425
Found at i:53341006 original size:27 final size:27
Alignment explanation
Indices: 53340917--53341452 Score: 586
Period size: 27 Copynumber: 19.8 Consensus size: 27
53340907 CGAAACATAA
** *
53340917 GGGCATTATAGTCATTTTACCATACATG
1 GGGCATTACGGTCATTTTACCCTACA-G
** ** * *
53340945 GGGTGTTATAGTCATTTTACCCCACAA
1 GGGCATTACGGTCATTTTACCCTACAG
** *
53340972 AAGCATTACGGTCATTTTAACCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
* *
53340999 GGGTATTACGGTCATTTTAACCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
* * *
53341026 GGGTATTACGGTCATTTTACCATACATA
1 GGGCATTACGGTCATTTTACCCTACA-G
* * * *
53341054 GGGTATTACGATCATTTTACCCCACAA
1 GGGCATTACGGTCATTTTACCCTACAG
*
53341081 GGGCATTACGGTCATTTTACCCTATAG
1 GGGCATTACGGTCATTTTACCCTACAG
* * * *
53341108 GGGTATTGCGATCATTTTACCCTACAA
1 GGGCATTACGGTCATTTTACCCTACAG
* *
53341135 GGGCATTATGGTTATTTTACCCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
* * *
53341162 GGGAATTACGGTCATTTTACCTTACAT
1 GGGCATTACGGTCATTTTACCCTACAG
* * *
53341189 GGGCATTACGATCATTTTACCTTACAT
1 GGGCATTACGGTCATTTTACCCTACAG
* *
53341216 GGGCATTACAGTCATTTTACCCTACAA
1 GGGCATTACGGTCATTTTACCCTACAG
* *
53341243 GGGTATTACGGTTATTTTACCCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
*
53341270 GGGCATTACGATCATTTTACCCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
* *
53341297 GGGTATTACGGTCATTTTACCTTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
* *
53341324 GGGTATTATGGTCATTTTACCCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
* *
53341351 GGGAATTACAGTCATTTTACCCTACAG
1 GGGCATTACGGTCATTTTACCCTACAG
* *
53341378 GGGCATTACAGTCATTTTACCCTATAG
1 GGGCATTACGGTCATTTTACCCTACAG
* * * *
53341405 GGGCATTATGATCATTTTACCCTAAAA
1 GGGCATTACGGTCATTTTACCCTACAG
*
53341432 GGGCATTACAGTCATTTTACC
1 GGGCATTACGGTCATTTTACC
53341453 TATTTTAGGG
Statistics
Matches: 432, Mismatches: 75, Indels: 3
0.85 0.15 0.01
Matches are distributed among these distances:
27 387 0.90
28 45 0.10
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGGCATTACGGTCATTTTACCCTACAG
Found at i:53349489 original size:53 final size:51
Alignment explanation
Indices: 53349368--53349491 Score: 135
Period size: 50 Copynumber: 2.4 Consensus size: 51
53349358 ACATTTAATA
*
53349368 AAGTCATGCATTATGTAAC-GCTCATGTAAGTTAAGTTTGCATCATAAATT
1 AAGTCATGCATTATGTAACTCCTCATGTAAGTTAAGTTTGCATCATAAATT
* * * * * *
53349418 ATGACATACATTATGTAACTCCT-ATGTTAGTTAAAAGTTTGTATTATTAAATT
1 AAGTCATGCATTATGTAACTCCTCATGTAAGTT--AAGTTTGCATCA-TAAATT
*
53349471 AAGTCATGCATTAAGTAACTC
1 AAGTCATGCATTATGTAACTC
53349492 ATTTGTTCAT
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
50 24 0.41
51 2 0.03
52 10 0.17
53 23 0.39
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38
Consensus pattern (51 bp):
AAGTCATGCATTATGTAACTCCTCATGTAAGTTAAGTTTGCATCATAAATT
Found at i:53349951 original size:42 final size:42
Alignment explanation
Indices: 53349904--53350024 Score: 125
Period size: 42 Copynumber: 2.9 Consensus size: 42
53349894 ATATGTGATA
*
53349904 TCGTGTAAGACCATATCTGGGACATTGGCATCGTATCTAATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTAATT
* * * * * *
53349946 TCGTGTAAGACCCTGTCTAGGACAGTGGCATCGATGTTTGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCG-TATCTAATT
* * * * *
53349989 ACATGTAAGACCACGTCTGGGAAATTGGCATTGTAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGTAT
53350025 ATGCTTTCTG
Statistics
Matches: 62, Mismatches: 16, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 31 0.50
43 31 0.50
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTAATT
Found at i:53350018 original size:43 final size:42
Alignment explanation
Indices: 53349907--53350024 Score: 112
Period size: 43 Copynumber: 2.8 Consensus size: 42
53349897 TGTGATATCG
** * *
53349907 TGTAAGACCATATCTGGGACATTGGCATCGTATCTAATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGTATCTAATTACA
* * * * *
53349949 TGTAAGACC-CTGTCTAGGACAGTGGCATCGATGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCG-TATCTAATTACA
* *
53349992 TGTAAGACCACGTCTGGGAAATTGGCATTGTAT
1 TGTAAGACCACGTCTGGGACATTGGCATCGTAT
53350025 ATGCTTTCTG
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
42 27 0.46
43 31 0.53
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGTATCTAATTACA
Found at i:53351935 original size:25 final size:25
Alignment explanation
Indices: 53351906--53351953 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
53351896 TTATAATATG
** *
53351906 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
53351931 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
53351954 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:53352016 original size:11 final size:11
Alignment explanation
Indices: 53351990--53352037 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
53351980 ATTTTGATAT
*
53351990 ACATGATTTG-
1 ACATGATATGC
53352000 ACATGATATGC
1 ACATGATATGC
*
53352011 ACATGATATGT
1 ACATGATATGC
53352022 AC--GATATGC
1 ACATGATATGC
53352031 ACATGAT
1 ACATGAT
53352038 GTATTCATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 8 0.25
10 9 0.28
11 15 0.47
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (11 bp):
ACATGATATGC
Found at i:53352157 original size:25 final size:26
Alignment explanation
Indices: 53352084--53352155 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
53352074 GAGGAAGTGC
* * * *
53352084 AAAAGGGC-TATGCCCTAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTATCA
53352109 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTATCA
53352135 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
53352156 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 8 0.19
26 34 0.81
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTATCA
Found at i:53352168 original size:25 final size:26
Alignment explanation
Indices: 53352094--53352168 Score: 84
Period size: 26 Copynumber: 2.9 Consensus size: 26
53352084 AAAAGGGCTA
* *
53352094 TGCCCTAGTTTACCGAAAAG-GGCTTT
1 TGCCCCAGTTTATC-AAAAGAGGCTTT
53352120 TGCCCCAGTTTATCAAAA-AGGGCTTT
1 TGCCCCAGTTTATCAAAAGA-GGCTTT
*
53352146 TGCCCCAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTATCAAAAGAGGCT
53352169 AGGCCTCCAG
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
25 16 0.37
26 27 0.63
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
TGCCCCAGTTTATCAAAAGAGGCTTT
Found at i:53352413 original size:31 final size:30
Alignment explanation
Indices: 53352375--53352458 Score: 105
Period size: 31 Copynumber: 2.7 Consensus size: 30
53352365 TCGTTACAGT
53352375 AAAGGCTTCGGCCCAGTAATATGAATAATGA
1 AAAGGCTTCGGCCCAGT-ATATGAATAATGA
* * *
53352406 AAAGGCTTCGGCCCAATGACATGAATAATGT
1 AAAGGCTTCGGCCCAGT-ATATGAATAATGA
* *
53352437 GAAGGCTTCGGCCTAGTATATG
1 AAAGGCTTCGGCCCAGTATATG
53352459 CTGAGATTGA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 4 0.09
31 41 0.91
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTATATGAATAATGA
Found at i:53355390 original size:28 final size:28
Alignment explanation
Indices: 53355321--53355421 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
53355311 GACAAGATTG
* * * *
53355321 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
53355351 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
53355379 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
53355408 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
53355422 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:53363311 original size:28 final size:28
Alignment explanation
Indices: 53363242--53363342 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
53363232 GACAAGATTG
* * * *
53363242 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
53363272 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
53363300 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
53363329 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
53363343 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:53373385 original size:40 final size:40
Alignment explanation
Indices: 53373330--53373510 Score: 240
Period size: 40 Copynumber: 4.5 Consensus size: 40
53373320 AATTTGAATG
*
53373330 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
53373370 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
53373410 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * * * *
53373450 ATGTTCGGGTTAAGACCTGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
53373490 ATAT-CTGGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
53373511 AAACTTGGGT
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 112 0.90
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:53376630 original size:25 final size:25
Alignment explanation
Indices: 53376601--53376648 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
53376591 TTATAATATG
** *
53376601 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
53376626 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
53376649 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:53376711 original size:11 final size:10
Alignment explanation
Indices: 53376679--53376732 Score: 58
Period size: 11 Copynumber: 5.4 Consensus size: 10
53376669 CATGAGATTT
53376679 TGATAT-ACA
1 TGATATGACA
*
53376688 TGATTTGACA
1 TGATATGACA
53376698 TGATATGCACA
1 TGATATG-ACA
*
53376709 TGATATG-TA
1 TGATATGACA
53376718 TGATATGCACA
1 TGATATG-ACA
53376729 TGAT
1 TGAT
53376733 GTATTCATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
9 13 0.35
10 9 0.24
11 15 0.41
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:53376832 original size:25 final size:25
Alignment explanation
Indices: 53376778--53376863 Score: 95
Period size: 26 Copynumber: 3.4 Consensus size: 25
53376768 GGAGGAAGTG
* *
53376778 CAAAAGGGC-TATGCCCTAGTTTACT
1 CAAAAGGGCTTTTGCCCCAGTTTA-T
*
53376803 GAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTTGCCCCAGTTTAT
53376828 CAAAAAGGGCTTTTGCCCCAG-TTAT
1 C-AAAAGGGCTTTTGCCCCAGTTTAT
*
53376853 TAAAAGAGGCT
1 CAAAAG-GGCT
53376864 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
24 5 0.09
25 17 0.32
26 31 0.58
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (25 bp):
CAAAAGGGCTTTTGCCCCAGTTTAT
Found at i:53380552 original size:15 final size:15
Alignment explanation
Indices: 53380532--53380584 Score: 72
Period size: 15 Copynumber: 3.5 Consensus size: 15
53380522 GTATCTTGGG
53380532 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
53380547 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
53380562 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
53380577 TTTCTTTA
1 TTTCTTTA
53380585 CTCGATTTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 2 0.06
15 31 0.94
ACGTcount: A:0.11, C:0.15, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:53380562 original size:30 final size:30
Alignment explanation
Indices: 53380528--53380584 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
53380518 TATCGTATCT
*
53380528 TGGGTTTCTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTCTATCT-TGGATTTCTTTATTC
53380558 TGGGTTTCTCTATCTTGGATTTCTTTA
1 TGGGTTTCTCTATCTTGGATTTCTTTA
53380585 CTCGATTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.11, C:0.14, G:0.18, T:0.58
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:53383897 original size:9 final size:9
Alignment explanation
Indices: 53383883--53383908 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
53383873 ACATCATGTG
53383883 CATATCATA
1 CATATCATA
53383892 CATATCATA
1 CATATCATA
53383901 CATATCAT
1 CATATCAT
53383909 GTGCATATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:53383904 original size:4 final size:5
Alignment explanation
Indices: 53383883--53383924 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
53383873 ACATCATGTG
*
53383883 CATAT CATA- CATAT CATA- CATAT CATGT GCATAT CATAT CAT
1 CATAT CATAT CATAT CATAT CATAT CATAT -CATAT CATAT CAT
53383925 TATTGTATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 8 0.25
5 20 0.62
6 4 0.12
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (5 bp):
CATAT
Found at i:53389680 original size:18 final size:17
Alignment explanation
Indices: 53389641--53389682 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
53389631 AAAAAGCTGT
53389641 GAAAAAGAAAAAGAAATC
1 GAAAAAGAAAAAGAAA-C
53389659 GAAAAAGAATAAAAGAAA-
1 GAAAAAG-A-AAAAGAAAC
53389677 GAAAAA
1 GAAAAA
53389683 AAGGAAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 13 0.59
19 1 0.05
20 8 0.36
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.05
Consensus pattern (17 bp):
GAAAAAGAAAAAGAAAC
Found at i:53389690 original size:18 final size:19
Alignment explanation
Indices: 53389642--53389699 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 19
53389632 AAAAGCTGTG
53389642 AAAAAGAAAAAGAAATCGAA
1 AAAAAGAAAAAGAAA-CGAA
*
53389662 AAAGAA-TAAAAGAAA-GAA
1 AAA-AAGAAAAAGAAACGAA
*
53389680 AAAAAGGAAAAGAGAACGAA
1 AAAAAGAAAAAGA-AACGAA
53389700 TGAGAGAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
17 2 0.06
18 12 0.38
19 2 0.06
20 14 0.44
21 2 0.06
ACGTcount: A:0.74, C:0.03, G:0.19, T:0.03
Consensus pattern (19 bp):
AAAAAGAAAAAGAAACGAA
Found at i:53391460 original size:39 final size:39
Alignment explanation
Indices: 53391417--53391497 Score: 135
Period size: 39 Copynumber: 2.1 Consensus size: 39
53391407 TTTAGTTATT
* * *
53391417 TTAGTTTGTGTCTTTAATTATGTTATAGTTTGAACATCA
1 TTAGTATGAGTCTTTAATTATGTCATAGTTTGAACATCA
53391456 TTAGTATGAGTCTTTAATTATGTCATAGTTTGAACATCA
1 TTAGTATGAGTCTTTAATTATGTCATAGTTTGAACATCA
53391495 TTA
1 TTA
53391498 ATATATGTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.09, G:0.15, T:0.48
Consensus pattern (39 bp):
TTAGTATGAGTCTTTAATTATGTCATAGTTTGAACATCA
Found at i:53391587 original size:50 final size:52
Alignment explanation
Indices: 53391526--53391642 Score: 157
Period size: 53 Copynumber: 2.3 Consensus size: 52
53391516 ATAAAGTCAC
* *
53391526 GCATTATGTAACTCTCATGTAAGTT-AAGTTTGCATCA-TAAATTATGACAT
1 GCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGACAT
* * *
53391576 GCATTATGTAACTCCCATGTTAGTTAAAAGTTTGTATCATTAAATTAAGCCAT
1 GCATTATGTAACTCCCATGTAAGTT-AAAGTTTGCATCATTAAATTAAGACAT
*
53391629 GCATTAAGTAACTC
1 GCATTATGTAACTC
53391643 ATTTATTCAT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
50 23 0.40
52 11 0.19
53 24 0.41
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (52 bp):
GCATTATGTAACTCCCATGTAAGTTAAAGTTTGCATCATTAAATTAAGACAT
Found at i:53393814 original size:24 final size:24
Alignment explanation
Indices: 53393782--53393844 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
53393772 AATCTCAAAT
53393782 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
53393806 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
53393830 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
53393845 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:53398626 original size:2 final size:2
Alignment explanation
Indices: 53398619--53398654 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
53398609 ATAACCCAAC
* *
53398619 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
53398655 TAAACATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:53398655 original size:10 final size:10
Alignment explanation
Indices: 53398617--53398675 Score: 57
Period size: 10 Copynumber: 5.9 Consensus size: 10
53398607 GCATAACCCA
53398617 ACATATATAT
1 ACATATATAT
*
53398627 ATATATATAT
1 ACATATATAT
* *
53398637 ATATATATTT
1 ACATATATAT
*
53398647 ACATATATTAA
1 ACATATA-TAT
*
53398658 ACAT-TTTAT
1 ACATATATAT
53398667 ACATATATA
1 ACATATATA
53398676 GGACTTAGAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
9 6 0.15
10 28 0.72
11 5 0.13
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.46
Consensus pattern (10 bp):
ACATATATAT
Found at i:53402329 original size:27 final size:28
Alignment explanation
Indices: 53402272--53402341 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
53402262 AAATTTGTAC
**
53402272 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
53402300 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
53402327 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
53402342 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:53402350 original size:27 final size:27
Alignment explanation
Indices: 53402272--53402353 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
53402262 AAATTTGTAC
* *
53402272 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
53402300 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
53402327 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
53402354 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:53410405 original size:27 final size:28
Alignment explanation
Indices: 53410348--53410417 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
53410338 AAATTTGTAC
**
53410348 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
53410376 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
53410403 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
53410418 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:53410426 original size:27 final size:27
Alignment explanation
Indices: 53410348--53410429 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
53410338 AAATTTGTAC
* *
53410348 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
53410376 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
53410403 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
53410430 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:53413520 original size:20 final size:20
Alignment explanation
Indices: 53413492--53413532 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
53413482 GCTATGTAAA
53413492 CCTCAGATCTCTATCCGAAT
1 CCTCAGATCTCTATCCGAAT
*
53413512 CCTCGGATCTCTATCCGAAT
1 CCTCAGATCTCTATCCGAAT
53413532 C
1 C
53413533 AATAGATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.22, C:0.37, G:0.12, T:0.29
Consensus pattern (20 bp):
CCTCAGATCTCTATCCGAAT
Found at i:53427051 original size:38 final size:38
Alignment explanation
Indices: 53427000--53427075 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
53426990 TCCAACTAAG
*
53427000 CAAATAAAATAATTCAATCATCGTAGCCCCAATTTATA
1 CAAATAAAATAATTCAATCATCATAGCCCCAATTTATA
53427038 CAAATAAAATAATTCAATCATCATAGCCCCAATTTATA
1 CAAATAAAATAATTCAATCATCATAGCCCCAATTTATA
53427076 TTCATTCCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.46, C:0.21, G:0.04, T:0.29
Consensus pattern (38 bp):
CAAATAAAATAATTCAATCATCATAGCCCCAATTTATA
Found at i:53430694 original size:43 final size:43
Alignment explanation
Indices: 53430647--53430740 Score: 188
Period size: 43 Copynumber: 2.2 Consensus size: 43
53430637 TCCCAGACGT
53430647 GGTCTTACATGTAATTATATATCGATACCACTATCCCAAACAG
1 GGTCTTACATGTAATTATATATCGATACCACTATCCCAAACAG
53430690 GGTCTTACATGTAATTATATATCGATACCACTATCCCAAACAG
1 GGTCTTACATGTAATTATATATCGATACCACTATCCCAAACAG
53430733 GGTCTTAC
1 GGTCTTAC
53430741 TCGTACACAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (43 bp):
GGTCTTACATGTAATTATATATCGATACCACTATCCCAAACAG
Found at i:53432445 original size:31 final size:31
Alignment explanation
Indices: 53432407--53432467 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
53432397 TTTCATATTT
53432407 CATATTTCATAACACTGGGCCGAAGCCTTTC
1 CATATTTCATAACACTGGGCCGAAGCCTTTC
**
53432438 CATATTTCATATTACTGGGCCGAAGCCTTT
1 CATATTTCATAACACTGGGCCGAAGCCTTT
53432468 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATTTCATAACACTGGGCCGAAGCCTTTC
Found at i:53432737 original size:23 final size:23
Alignment explanation
Indices: 53432680--53432845 Score: 244
Period size: 23 Copynumber: 7.1 Consensus size: 23
53432670 CCTAGCCTTT
*
53432680 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
53432703 TTTGAATAACTGGGGCATAAGCCC
1 TTT-AATAACTGGGGCATAAGCCC
53432727 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
53432750 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
53432774 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
53432797 TTTTGATAAC-CGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
53432820 TTTAATAACTGGGACATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
53432843 TTT
1 TTT
53432846 TTCACTTCCT
Statistics
Matches: 131, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
22 8 0.06
23 71 0.54
24 52 0.40
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:53432748 original size:47 final size:47
Alignment explanation
Indices: 53432680--53432846 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
53432670 CCTAGCCTTT
*
53432680 TTTAATAACTGGGGCAAAAGCCC-TTTGAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTG-ATAACTGGGGCATAAGCCC
53432727 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
* *
53432774 TTTTATAACTGGGGCATAAGCCCTTTTGATAAC-CGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
53432820 TTTAATAACTGGGACATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
53432847 TCACTTCCTC
Statistics
Matches: 114, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
46 37 0.32
47 73 0.64
48 4 0.04
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:53432918 original size:9 final size:9
Alignment explanation
Indices: 53432904--53432960 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
53432894 ATCTCATGTG
53432904 CATATCATA
1 CATATCATA
*
53432913 CATATCATGTG
1 CATATCA--TA
53432924 CATATCATA
1 CATATCATA
* *
53432933 CATGTCATGTG
1 CATATCA--TA
53432944 CATATCATA
1 CATATCATA
53432953 CATATCAT
1 CATATCAT
53432961 GTTTATTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:53432920 original size:20 final size:20
Alignment explanation
Indices: 53432892--53432962 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
53432882 GCATTTATGA
*
53432892 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
53432912 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
53432932 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
53432952 ACATATCATGT
1 ACATATCATGT
53432963 TTATTAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:53432927 original size:11 final size:11
Alignment explanation
Indices: 53432897--53432951 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
53432887 TATGAACATC
53432897 TCATGTGCATA
1 TCATGTGCATA
*
53432908 TCA--TACATA
1 TCATGTGCATA
53432917 TCATGTGCATA
1 TCATGTGCATA
* *
53432928 TCA--TACATG
1 TCATGTGCATA
53432937 TCATGTGCATA
1 TCATGTGCATA
53432948 TCAT
1 TCAT
53432952 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:53433027 original size:25 final size:25
Alignment explanation
Indices: 53432999--53433046 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
53432989 ATATATAAAC
* * *
53432999 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
53433024 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
53433047 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:53440345 original size:19 final size:19
Alignment explanation
Indices: 53440309--53440347 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
53440299 TTTTCACCAT
* *
53440309 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
53440328 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
53440347 A
1 A
53440348 ATAGTTAAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:53440858 original size:28 final size:28
Alignment explanation
Indices: 53440818--53440899 Score: 112
Period size: 28 Copynumber: 2.9 Consensus size: 28
53440808 GTCACCAGAT
*
53440818 ACAGATATTTTGTGGCAGTGCCACCAAA
1 ACAGATAATTTGTGGCAGTGCCACCAAA
* * *
53440846 ACAGATAATTTGTAGCAGGGCCACCAGA
1 ACAGATAATTTGTGGCAGTGCCACCAAA
53440874 ACAGATAATTTGTGGCA-TAGCCACCA
1 ACAGATAATTTGTGGCAGT-GCCACCA
53440900 GGACGCTTCC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (28 bp):
ACAGATAATTTGTGGCAGTGCCACCAAA
Found at i:53441053 original size:28 final size:28
Alignment explanation
Indices: 53441006--53441070 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
53440996 AAATTAACCC
* * *
53441006 TAGGGGTATAAAGGTCATTTTGCATACG
1 TAGGGGTATAAAGATAATTTTGCATACA
* *
53441034 TAGGGGTATAATGATAATTTTGTATACA
1 TAGGGGTATAAAGATAATTTTGCATACA
53441062 TAGGGGTAT
1 TAGGGGTAT
53441071 TCTAGTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.35
Consensus pattern (28 bp):
TAGGGGTATAAAGATAATTTTGCATACA
Found at i:53445887 original size:66 final size:68
Alignment explanation
Indices: 53445811--53445997 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
53445801 TAGTACCACT
*
53445811 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
53445873 CACG
65 CACG
53445877 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
53445942 ATCACG
63 ATCACG
53445948 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
53445998 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:53445922 original size:71 final size:71
Alignment explanation
Indices: 53445834--53445997 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
53445824 CGATTTGTCT
53445834 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
53445899 CTTTCA
66 CTTTCA
53445905 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
53445970 CTTTCA
66 CTTTCA
53445976 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
53445998 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:53446035 original size:71 final size:70
Alignment explanation
Indices: 53445834--53446031 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
53445824 CGATTTGTCT
* * *
53445834 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
53445899 CTTTCA
65 CTTTCA
* * *
53445905 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
53445970 CTTTCA
65 CTTTCA
* *
53445976 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
53446032 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:53453455 original size:66 final size:68
Alignment explanation
Indices: 53453379--53453565 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
53453369 TAGTACCACT
*
53453379 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
53453441 CACG
65 CACG
53453445 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
53453510 ATCACG
63 ATCACG
53453516 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
53453566 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:53453490 original size:71 final size:71
Alignment explanation
Indices: 53453402--53453565 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
53453392 CGATTTGTCT
53453402 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
53453467 CTTTCA
66 CTTTCA
53453473 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
53453538 CTTTCA
66 CTTTCA
53453544 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
53453566 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:53453603 original size:71 final size:70
Alignment explanation
Indices: 53453402--53453599 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
53453392 CGATTTGTCT
* * *
53453402 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
53453467 CTTTCA
65 CTTTCA
* * *
53453473 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
53453538 CTTTCA
65 CTTTCA
* *
53453544 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
53453600 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:53456879 original size:13 final size:13
Alignment explanation
Indices: 53456861--53456885 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
53456851 GGTTTGTTTA
53456861 TTAAACTAATTAT
1 TTAAACTAATTAT
53456874 TTAAACTAATTA
1 TTAAACTAATTA
53456886 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:53458307 original size:40 final size:40
Alignment explanation
Indices: 53458262--53458402 Score: 176
Period size: 40 Copynumber: 3.5 Consensus size: 40
53458252 AAATCGGGTA
*
53458262 TATATATGACACTTAGTGTGTGATTCAATATAGCTTCGGC
1 TATATATGACACTTAGTGTGTGATTCAACATAGCTTCGGC
* *
53458302 TATATATGGCACTAAGTGTGTGATTCAACATAGCTTCGGC
1 TATATATGACACTTAGTGTGTGATTCAACATAGCTTCGGC
* * * *
53458342 TATATAT-AGCACTTAGTGTGTGAGATCGAGATAGCTTCCGC
1 TATATATGA-CACTTAGTGTGTGA-TTCAACATAGCTTCGGC
* *
53458383 TATATATGGCACTTTGTGTG
1 TATATATGACACTTAGTGTG
53458403 ATAGATATCG
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
40 57 0.66
41 30 0.34
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (40 bp):
TATATATGACACTTAGTGTGTGATTCAACATAGCTTCGGC
Found at i:53465065 original size:51 final size:51
Alignment explanation
Indices: 53464989--53465090 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
53464979 TGAAAGACTA
53464989 GATTTATCAGTGGTGGAACACTTTGGTTGCAGTTGTACCGAGAGATCGAGT
1 GATTTATCAGTGGTGGAACACTTTGGTTGCAGTTGTACCGAGAGATCGAGT
53465040 GATTTATCAGTGGTGGAACACTTTGGTTGCAGTTGTACCGAGAGATCGAGT
1 GATTTATCAGTGGTGGAACACTTTGGTTGCAGTTGTACCGAGAGATCGAGT
53465091 AAACTGGGAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (51 bp):
GATTTATCAGTGGTGGAACACTTTGGTTGCAGTTGTACCGAGAGATCGAGT
Found at i:53465748 original size:34 final size:32
Alignment explanation
Indices: 53465701--53465817 Score: 92
Period size: 34 Copynumber: 3.5 Consensus size: 32
53465691 TGACTACATT
*
53465701 CTGGGCCTAAGCCCATATCAGTAACAGTAGTAAA
1 CTGGG-CTTAGCCCATATCAGTAACAGTAG-AAA
* * *
53465735 CTGGAGCTTAGCCCATTTCAGTAACAATAG-CA
1 CTGG-GCTTAGCCCATATCAGTAACAGTAGAAA
* * * *
53465767 GTGGGGCCTAAGCCCATATCAGTAACAGTGGCAAT
1 CT-GGG-CTTAGCCCATATCAGTAACAGTAG-AAA
53465802 CTGGGCATTAGCCCAT
1 CTGGGC-TTAGCCCAT
53465818 TACAGAATCA
Statistics
Matches: 64, Mismatches: 13, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
32 3 0.05
33 23 0.36
34 36 0.56
35 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (32 bp):
CTGGGCTTAGCCCATATCAGTAACAGTAGAAA
Found at i:53465789 original size:33 final size:34
Alignment explanation
Indices: 53465703--53465793 Score: 105
Period size: 34 Copynumber: 2.7 Consensus size: 34
53465693 ACTACATTCT
*
53465703 GGGCCTAAGCCCATATCAGTAACAGTAGTAAACTG
1 GGGCCTAAGCCCATATCAGTAACAATAG-AAACTG
* * * * *
53465738 GAG-CTTAGCCCATTTCAGTAACAATAG-CAGTG
1 GGGCCTAAGCCCATATCAGTAACAATAGAAACTG
53465770 GGGCCTAAGCCCATATCAGTAACA
1 GGGCCTAAGCCCATATCAGTAACA
53465794 GTGGCAATCT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
32 5 0.11
33 18 0.39
34 21 0.46
35 2 0.04
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (34 bp):
GGGCCTAAGCCCATATCAGTAACAATAGAAACTG
Found at i:53466972 original size:38 final size:37
Alignment explanation
Indices: 53466916--53467028 Score: 181
Period size: 38 Copynumber: 3.0 Consensus size: 37
53466906 TTCAGTGATG
53466916 TATATCCGGACTTAGGTCCGCAGGCTATGTGCTGGAAT
1 TATAT-CGGACTTAGGTCCGCAGGCTATGTGCTGGAAT
53466954 TATATCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCGGACTTA-GGTCCGCAGGCTATGTGCTGGAAT
* *
53466992 TATATCCGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATATCGGACTT-AGGTCCGCAGGCTATGTGCTGGAA
53467029 ATATGTCCGG
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
37 8 0.11
38 62 0.87
39 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (37 bp):
TATATCGGACTTAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:53467056 original size:39 final size:38
Alignment explanation
Indices: 53466916--53467065 Score: 142
Period size: 38 Copynumber: 3.9 Consensus size: 38
53466906 TTCAGTGATG
* * *
53466916 TATATCCGGACTT-AGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCC-GACTTAAAGTCCGCAGGCTACGTGCTGGAAA
* ** * *
53466954 TATATCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
*
53466992 TATATCCGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
* * * *
53467030 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGG
1 TATATCC-GACTTAAAGT-CCGCAGGCTACGTGCTGG
53467066 TATTATACCG
Statistics
Matches: 98, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
37 5 0.05
38 75 0.77
39 18 0.18
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (38 bp):
TATATCCGACTTAAAGTCCGCAGGCTACGTGCTGGAAA
Found at i:53473644 original size:38 final size:39
Alignment explanation
Indices: 53473533--53473656 Score: 198
Period size: 38 Copynumber: 3.2 Consensus size: 39
53473523 TTCAGTGATG
53473533 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCT-GAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
53473571 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
53473610 TATATCC-GACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
53473648 TATGTCCGG
1 TATATCCGG
53473657 GCTAAAGTCC
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
38 68 0.85
39 12 0.15
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:53473683 original size:39 final size:39
Alignment explanation
Indices: 53473630--53473714 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 39
53473620 TTAAGGTCCG
* *
53473630 CAGGCTACGTGCTGGAAATATGTCCGGG-CTAAAGTCCCA
1 CAGGCTTCGAGCTGGAAATATG-CCGGGTCTAAAGTCCCA
* * * * *
53473669 CAGGCTTCGAGCTGGTATTATGCCGGGTTTAAATTCCCG
1 CAGGCTTCGAGCTGGAAATATGCCGGGTCTAAAGTCCCA
53473708 CAGGCTT
1 CAGGCTT
53473715 GTGCTGGTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
38 5 0.13
39 33 0.87
ACGTcount: A:0.21, C:0.25, G:0.28, T:0.26
Consensus pattern (39 bp):
CAGGCTTCGAGCTGGAAATATGCCGGGTCTAAAGTCCCA
Found at i:53473689 original size:77 final size:77
Alignment explanation
Indices: 53473533--53473689 Score: 176
Period size: 77 Copynumber: 2.0 Consensus size: 77
53473523 TTCAGTGATG
* * * ** *
53473533 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGAATTATATCCGGACTTAGGGTCCGCAGGCT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAATATATCCGGACTTAAAGTCCACAGGCT
*
53473598 ATGTGCTGGAAT
66 ATGAGCTGGAAT
* *
53473610 TATATCC-GACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCACAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCT-GAAATATATCCGGACTTAAAGT-CCACAGG
*
53473673 CT-TCGAGCTGGTAT
64 CTAT-GAGCTGGAAT
53473687 TAT
1 TAT
53473690 GCCGGGTTTA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
76 29 0.43
77 38 0.57
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (77 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAATATATCCGGACTTAAAGTCCACAGGCT
ATGAGCTGGAAT
Found at i:53473721 original size:38 final size:38
Alignment explanation
Indices: 53473589--53473725 Score: 102
Period size: 38 Copynumber: 3.6 Consensus size: 38
53473579 GACTTAGGGT
* * *
53473589 CCGCAGGCTATGTGCTGG-AATTATATCC-GACTTAAGGT-
1 CCGCAGGCT-TGTGCTGGTAA-TATGTCCGGGC-TAAAGTC
* *
53473627 CCGCAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGTC
1 CCGCAGGCT-TGTGCTGGTAATATGTCCGGGCTAAAGTC
* * * * *
53473666 CCACAGGCTTCGAGCTGGTATTATG-CCGGGTTTAAATTC
1 CCGCAGGCTT-GTGCTGGTAATATGTCCGGG-CTAAAGTC
53473705 CCGCAGGCTTGTGCTGGTAAT
1 CCGCAGGCTTGTGCTGGTAAT
53473726 TGGTTTCAAG
Statistics
Matches: 80, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
38 42 0.52
39 38 0.47
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.27
Consensus pattern (38 bp):
CCGCAGGCTTGTGCTGGTAATATGTCCGGGCTAAAGTC
Found at i:53474557 original size:23 final size:23
Alignment explanation
Indices: 53474531--53474578 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
53474521 CCCATGCAGC
53474531 GCAACATA-ATATTATACATGG-AT
1 GCAACATACATA-TA-ACATGGTAT
53474554 GCAACATACATATAACATGGTAT
1 GCAACATACATATAACATGGTAT
53474577 GC
1 GC
53474579 TCAAATACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.26
23 14 0.61
24 3 0.13
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.27
Consensus pattern (23 bp):
GCAACATACATATAACATGGTAT
Found at i:53474697 original size:27 final size:27
Alignment explanation
Indices: 53474667--53474767 Score: 157
Period size: 27 Copynumber: 3.7 Consensus size: 27
53474657 GGGTATTTCA
*
53474667 GTCATTTTATCAAATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
53474694 GTCATTTTATCACCTAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
53474721 GTCATTTTATCACATGAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
53474748 GTCATTTTATCACATGAGGG
1 GTCATTTTATCACATAAGGG
53474768 TTTAGGTACG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:53478786 original size:40 final size:39
Alignment explanation
Indices: 53478731--53478897 Score: 203
Period size: 40 Copynumber: 4.2 Consensus size: 39
53478721 TGAATGATAC
* * *
53478731 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
*
53478771 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
53478811 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-TCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT-TATAT
* * **
53478850 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
53478890 CC-GGCTAA
1 CCGGGCTAA
53478898 ATTCCGAAGA
Statistics
Matches: 111, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
38 1 0.01
39 38 0.34
40 69 0.62
41 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:53478876 original size:79 final size:79
Alignment explanation
Indices: 53478731--53478897 Score: 230
Period size: 79 Copynumber: 2.1 Consensus size: 79
53478721 TGAATGATAC
* * * *
53478731 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGT-ATTATACCCGGGTTAAGACCCGAAGGCAATTG
*
53478796 TGCGAGTTGTTATAT
65 TGCGAGTGGTTATAT
*
53478811 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-TCTATACCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTAT-TATACCCGGGTTAAGACCCGAAGGCAATTG
**
53478875 TGCTTGTGGTTATAT
65 TGCGAGTGGTTATAT
53478890 CC-GGCTAA
1 CCGGGCTAA
53478898 ATTCCGAAGA
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 7 0.09
79 42 0.54
80 29 0.37
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTATTATACCCGGGTTAAGACCCGAAGGCAATTGT
GCGAGTGGTTATAT
Found at i:53487753 original size:40 final size:40
Alignment explanation
Indices: 53487698--53487907 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
53487688 AACATTGGAA
53487698 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
53487738 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
53487778 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
53487818 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
53487857 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
53487898 CTATATCCGG
1 ATATATCCGG
53487908 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:53493872 original size:14 final size:14
Alignment explanation
Indices: 53493850--53493897 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
53493840 ACCTAAACCG
* *
53493850 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
53493864 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
53493878 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
53493892 ACCATT
1 ACCATT
53493898 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:53494280 original size:11 final size:11
Alignment explanation
Indices: 53494257--53494295 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
53494247 TATACAAGTT
53494257 AAAAAAAAT--
1 AAAAAAAATCG
53494266 AAAAAAAATCG
1 AAAAAAAATCG
*
53494277 AAAAAAATTCG
1 AAAAAAAATCG
53494288 AAAAAAAA
1 AAAAAAAA
53494296 AAAAAAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 9 0.35
11 17 0.65
ACGTcount: A:0.79, C:0.05, G:0.05, T:0.10
Consensus pattern (11 bp):
AAAAAAAATCG
Found at i:53499544 original size:19 final size:19
Alignment explanation
Indices: 53499520--53499559 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
53499510 AGCTCCCATG
53499520 TAGCTC-CACACCAGCTCAT
1 TAGCTCGCA-ACCAGCTCAT
*
53499539 TAGCTCGGAACCAGCTCAT
1 TAGCTCGCAACCAGCTCAT
53499558 TA
1 TA
53499560 TCAGCTCACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.95
20 1 0.05
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.23
Consensus pattern (19 bp):
TAGCTCGCAACCAGCTCAT
Found at i:53500822 original size:14 final size:14
Alignment explanation
Indices: 53500800--53500847 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
53500790 ACCTAAACTG
* *
53500800 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
53500814 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
53500828 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
53500842 ACCATT
1 ACCATT
53500848 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:53502086 original size:46 final size:46
Alignment explanation
Indices: 53502018--53502154 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
53502008 TATATATACA
* * * * *
53502018 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCGCATGTC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATATC
*
53502064 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATATC
*
53502110 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATAT
53502155 ATACACTTCC
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 84 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCGCATATC
Found at i:53502199 original size:47 final size:47
Alignment explanation
Indices: 53502128--53502596 Score: 706
Period size: 47 Copynumber: 10.0 Consensus size: 47
53502118 ACACATTTCG
* * * * * *
53502128 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
* *
53502175 CATTGGCCATTCAGCCTTGTCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
53502222 CATTGGCCATTCGACCTTATCACATATATGCAAGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
53502269 CATTGGCCATTTGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
53502316 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
53502363 CATTGGCCATTCGGCCTTATCACACATATGCACGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
53502410 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
53502457 CACTGGCCCTTCGGCCTTATCACATATATGCATGTTCACATTTATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
53502504 CATTGGCTATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * *
53502551 CATTGGCCATTTGGCCTTATCACACATACGCATGTTCACATTCATC
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
53502597 TATGCATGTT
Statistics
Matches: 386, Mismatches: 35, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
46 1 0.00
47 385 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:53502318 original size:141 final size:141
Alignment explanation
Indices: 53502168--53502855 Score: 819
Period size: 141 Copynumber: 4.7 Consensus size: 141
53502158 CACTTCCACG
* *
53502168 TTCATCACATTGGCCATTCAGCCTTGTCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
* *
53502233 CGACCTTATCACATATATGCAAGTTCACATTCATCACATTGGCCATTTGGCCTTATCACACATAC
66 CGGCCTTATCACATATATGCAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
53502298 GCATGTTCACA
131 GCATGTTCACA
*
53502309 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
* * * *
53502374 CGGCCTTATCACACATATGCACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
66 CGGCCTTATCACATATATGCAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
53502439 GCATGTTCACA
131 GCATGTTCACA
* * * *
53502450 TTCATCACACTGGCCCTTCGGCCTTATCACATATATGCATGTTCACATTTATCACATTGGCTATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
* * *
53502515 CGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTTGGCCTTATCACACATAC
66 CGGCCTTATCACATATATGCAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
53502580 GCATGTTCACA
131 GCATGTTCACA
* ** ** ** *
53502591 TTCATCTATGCA-TGTTCACATTCATCACATTGGC-CAT-TCGGCCT-TATCACACATATGCATG
1 TTCATC-A--CATTG-GC-CATTCGGC-C-TTATCACATATATGCATGT-T--CACAT-T-CA--
*
53502652 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
52 -TCACAT---------TGGCCATTCGGCCTTATCACATATATGCAAGTTCACATTCATCACATTG
* * *
53502717 GCCCTTCGGCCTTATCACATATATGCATGTTCACA
107 GCCATTCGGCCTTATCACACATACGCATGTTCACA
* * *
53502752 TTCATCACATTGGCTATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTTGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
* *
53502817 CGGCCTTATCTCATATATACACA-TTCACATTCATCACAT
66 CGGCCTTATCACATATATGCA-AGTTCACATTCATCACAT
53502856 AAAATCCTAA
Statistics
Matches: 469, Mismatches: 49, Indels: 58
0.81 0.09 0.10
Matches are distributed among these distances:
141 310 0.66
142 1 0.00
143 2 0.00
144 4 0.01
145 10 0.02
146 4 0.01
147 8 0.02
148 1 0.00
149 1 0.00
150 6 0.01
152 6 0.01
153 2 0.00
154 1 0.00
155 8 0.02
156 4 0.01
157 10 0.02
158 4 0.01
159 2 0.00
160 1 0.00
161 84 0.18
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (141 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACATATATGCAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAC
GCATGTTCACA
Found at i:53502356 original size:38 final size:39
Alignment explanation
Indices: 53502312--53502753 Score: 120
Period size: 47 Copynumber: 10.2 Consensus size: 39
53502302 GTTCACATTC
53502312 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATG-------T
*
53502358 CATCACATTGGCCATTCGGCCTTATCACACATATGCACGTTCACATT
1 -ATCACATTGGCCATTCGGCCTTATCACACATATGCA---T----GT
*
53502405 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
1 -ATCACATTGGCCATTCGGCCTTATCACACATATGCATG-------T
* * *
53502452 CATCACACTGGCCCTTCGGCCTTATCACATATATGCATGTTCACATTT
1 -ATCACATTGGCCATTCGGCCTTATCACACATATGCATG--------T
* * *
53502500 ATCACATTGGCTATTCGGCCTTATCTCATATATGCATGTTCACATT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATG-------T
* *
53502546 CATCACATTGGCCATTTGGCCTTATCACACATACGCATGT
1 -ATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
** *
53502586 -TCACATT---CATCTATGCATGT-T--CACAT-T-C----
1 ATCACATTGGCCAT-TCGGCCT-TATCACACATATGCATGT
53502614 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATG-------T
*
53502660 CATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATT
1 -ATCACATTGGCCATTCGGCCTTATCACACATATGCATG-------T
* *
53502707 CATCACATTGGCCCTTCGGCCTTATCACATATATGCATGT
1 -ATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
53502747 -TCACATT
1 ATCACATT
53502754 CATCACATTG
Statistics
Matches: 323, Mismatches: 33, Indels: 87
0.73 0.07 0.20
Matches are distributed among these distances:
29 7 0.02
30 1 0.00
31 5 0.02
32 4 0.01
33 5 0.02
34 6 0.02
35 4 0.01
36 5 0.02
37 1 0.00
38 14 0.04
40 2 0.01
44 1 0.00
46 3 0.01
47 261 0.81
48 3 0.01
50 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.34
Consensus pattern (39 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGT
Found at i:53502607 original size:67 final size:67
Alignment explanation
Indices: 53502525--53502663 Score: 251
Period size: 67 Copynumber: 2.1 Consensus size: 67
53502515 CGGCCTTATC
* *
53502525 TCATATATGCATGTTCACATTCATCACATTGGCCATTTGGCCTTATCACACATACGCATGTTCAC
1 TCATCTATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC
53502590 AT
66 AT
*
53502592 TCATCTATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCAC
1 TCATCTATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC
53502657 AT
66 AT
53502659 TCATC
1 TCATC
53502664 ACATTGGCCA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.35
Consensus pattern (67 bp):
TCATCTATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCAC
AT
Found at i:53502612 original size:161 final size:161
Alignment explanation
Indices: 53502436--53502757 Score: 554
Period size: 161 Copynumber: 2.0 Consensus size: 161
53502426 TTATCACATA
* * *
53502436 TATGCATGTTCACATTCATCACACTGGCCCTTCGGCCTTATCACATATATGCATGTTCACATTTA
1 TATGCATGTTCACATTCATCACACTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * *
53502501 TCACATTGGCTATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTTGGC
66 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
53502566 CTTATCACACATACGCATGTTCACATTCATC
131 CTTATCACACATACGCATGTTCACATTCATC
*
53502597 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TATGCATGTTCACATTCATCACACTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
53502662 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCCTTCGGC
66 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
* *
53502727 CTTATCACATATATGCATGTTCACATTCATC
131 CTTATCACACATACGCATGTTCACATTCATC
53502758 ACATTGGCTA
Statistics
Matches: 151, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
161 151 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (161 bp):
TATGCATGTTCACATTCATCACACTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
CTTATCACACATACGCATGTTCACATTCATC
Found at i:53502618 original size:114 final size:114
Alignment explanation
Indices: 53502483--53502710 Score: 393
Period size: 114 Copynumber: 2.0 Consensus size: 114
53502473 TTATCACATA
* * * *
53502483 TATGCATGTTCACATTTATCACATTGGCTATTCGGCCTTATCTCATATATGCATGTTCACATTCA
1 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
53502548 TCACATTGGCCATTTGGCCTTATCACACATACGCATGTTCACATTCATC
66 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
53502597 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
53502662 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
66 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
53502711 ACATTGGCCC
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 107 1.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (114 bp):
TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
Found at i:53502635 original size:208 final size:208
Alignment explanation
Indices: 53502389--53502804 Score: 715
Period size: 208 Copynumber: 2.0 Consensus size: 208
53502379 TTATCACACA
*
53502389 TATGCACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TATGCACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * *
53502454 TCACACTGGCCCTTCGGCCTTATCACATATATGCATGTTCACATTTATCACATTGGCTATTCGGC
66 TCACACTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
* *
53502519 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTTGGCCTTATCACACATACGCAT
131 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
53502584 GTTCACATTCATC
196 GTTCACATTCATC
*
53502597 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TATGCACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
53502662 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCCTTCGGC
66 TCACACTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
* * * *
53502727 CTTATCACATATATGCATGTTCACATTCATCACATTGGCTATTCGGCCTTATCTCATATATGCAT
131 CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
53502792 GTTCACATTCATC
196 GTTCACATTCATC
53502805 ACATTTGCCA
Statistics
Matches: 195, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
208 195 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (208 bp):
TATGCACGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
TCACACTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
CTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
GTTCACATTCATC
Found at i:53502649 original size:47 final size:47
Alignment explanation
Indices: 53502597--53502855 Score: 437
Period size: 47 Copynumber: 5.5 Consensus size: 47
53502587 CACATTCATC
*
53502597 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
1 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
53502644 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
*
53502691 TATGCATGTTCACATTCATCACATTGGCCCTTCGGCCTTATCACATA
1 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
* *
53502738 TATGCATGTTCACATTCATCACATTGGCTATTCGGCCTTATCTCATA
1 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
* *
53502785 TATGCATGTTCACATTCATCACATTTGCCATTCGGCCTTATCTCATA
1 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
* **
53502832 TATACACATTCACATTCATCACAT
1 TATGCATGTTCACATTCATCACAT
53502856 AAAATCCTAA
Statistics
Matches: 202, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 202 1.00
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.35
Consensus pattern (47 bp):
TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
Found at i:53502687 original size:22 final size:22
Alignment explanation
Indices: 53502614--53502689 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
53502604 GTTCACATTC
53502614 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
53502636 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
53502660 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
53502683 ATCACAT
1 ATCACAT
53502690 ATATGCATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 13 0.32
23 11 0.27
24 11 0.27
25 6 0.15
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:53502793 original size:255 final size:255
Alignment explanation
Indices: 53502342--53502826 Score: 925
Period size: 255 Copynumber: 1.9 Consensus size: 255
53502332 TTATCACACA
53502342 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCACGTTCACATTCA
1 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCACGTTCACATTCA
53502407 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACACTGGCCCTTCGGC
66 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACACTGGCCCTTCGGC
*
53502472 CTTATCACATATATGCATGTTCACATTTATCACATTGGCTATTCGGCCTTATCTCATATATGCAT
131 CTTATCACATATATGCATGTTCACATTCATCACATTGGCTATTCGGCCTTATCTCATATATGCAT
*
53502537 GTTCACATTCATCACATTGGCCATTTGGCCTTATCACACATACGCATGTTCACATTCATC
196 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
*
53502597 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCACGTTCACATTCA
*
53502662 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCCTTCGGC
66 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACACTGGCCCTTCGGC
53502727 CTTATCACATATATGCATGTTCACATTCATCACATTGGCTATTCGGCCTTATCTCATATATGCAT
131 CTTATCACATATATGCATGTTCACATTCATCACATTGGCTATTCGGCCTTATCTCATATATGCAT
*
53502792 GTTCACATTCATCACATTTGCCATTCGGCCTTATC
196 GTTCACATTCATCACATTGGCCATTCGGCCTTATC
53502827 TCATATATAC
Statistics
Matches: 225, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
255 225 1.00
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (255 bp):
TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCACGTTCACATTCA
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACACTGGCCCTTCGGC
CTTATCACATATATGCATGTTCACATTCATCACATTGGCTATTCGGCCTTATCTCATATATGCAT
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATC
Found at i:53502846 original size:302 final size:302
Alignment explanation
Indices: 53502298--53502855 Score: 999
Period size: 302 Copynumber: 1.8 Consensus size: 302
53502288 TCACACATAC
53502298 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
53502363 CATTGGCCATTCGGCCTTATCACACATATGCACGTTCACATTCATCACATTGGCCATTCGGCCTT
66 CATTGGCCATTCGGCCTTATCACACATATGCACGTTCACATTCATCACATTGGCCATTCGGCCTT
*
53502428 ATCACATATATGCATGTTCACATTCATCACACTGGCCCTTCGGCCTTATCACATATATGCATGTT
131 ATCACATATATGCATGTTCACATTCATCACACTGGCCATTCGGCCTTATCACATATATGCATGTT
* * * **
53502493 CACATTTATCACATTGGCTATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGC
196 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACATTGGC
53502558 CATTTGGCCTTATCACACATACGCATGTTCACATTCATCTAT
261 CATTTGGCCTTATCACACATACGCATGTTCACATTCATCTAT
53502600 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * *
53502665 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCCTTCGGCCTT
66 CATTGGCCATTCGGCCTTATCACACATATGCACGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
53502730 ATCACATATATGCATGTTCACATTCATCACATTGGCTATTCGGCCTTATCTCATATATGCATGTT
131 ATCACATATATGCATGTTCACATTCATCACACTGGCCATTCGGCCTTATCACATATATGCATGTT
*
53502795 CACATTCATCACATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
196 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
53502856 AAAATCCTAA
Statistics
Matches: 243, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
302 243 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (302 bp):
GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
CATTGGCCATTCGGCCTTATCACACATATGCACGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATATGCATGTTCACATTCATCACACTGGCCATTCGGCCTTATCACATATATGCATGTT
CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACATTGGC
CATTTGGCCTTATCACACATACGCATGTTCACATTCATCTAT
Found at i:53502902 original size:58 final size:58
Alignment explanation
Indices: 53502838--53502955 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
53502828 CATATATACA
53502838 CATTCACATTCATCACATAAAATCCTAAATCAAAATATAAATTTTCATGTATTCACAT
1 CATTCACATTCATCACATAAAATCCTAAATCAAAATATAAATTTTCATGTATTCACAT
53502896 CATTCACATTCATCACATAAAATCCTAAATCAAAATATAAATTTTCATGTATTCACAT
1 CATTCACATTCATCACATAAAATCCTAAATCAAAATATAAATTTTCATGTATTCACAT
53502954 CA
1 CA
53502956 CAATTATCCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.43, C:0.21, G:0.02, T:0.34
Consensus pattern (58 bp):
CATTCACATTCATCACATAAAATCCTAAATCAAAATATAAATTTTCATGTATTCACAT
Found at i:53511284 original size:28 final size:28
Alignment explanation
Indices: 53511239--53511326 Score: 122
Period size: 28 Copynumber: 3.1 Consensus size: 28
53511229 TACCCATTGA
** *
53511239 ATACTCAATGCCTGGCACACTAAGTGCC
1 ATACTCAATATCTCGCACACTAAGTGCC
53511267 ATACTCAATATCTCGCACACTAAGTGCC
1 ATACTCAATATCTCGCACACTAAGTGCC
* **
53511295 ACACTTGATATCTCGCACACTAAGTGCC
1 ATACTCAATATCTCGCACACTAAGTGCC
53511323 ATAC
1 ATAC
53511327 ATAGCCGAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.31, C:0.32, G:0.14, T:0.24
Consensus pattern (28 bp):
ATACTCAATATCTCGCACACTAAGTGCC
Found at i:53511363 original size:40 final size:40
Alignment explanation
Indices: 53511310--53511403 Score: 152
Period size: 40 Copynumber: 2.4 Consensus size: 40
53511300 TGATATCTCG
*
53511310 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATCA
1 CACACTAAGTGCCATACATAGCCGAAGCTATATCAAATCA
* *
53511350 CACACTAAGTGCCATATATAGCCGAAGCTATATCAAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATATCAAATCA
*
53511390 CACACTATGTGCCA
1 CACACTAAGTGCCA
53511404 CAATTAGCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATATCAAATCA
Found at i:53511412 original size:40 final size:39
Alignment explanation
Indices: 53511307--53511412 Score: 133
Period size: 40 Copynumber: 2.6 Consensus size: 39
53511297 ACTTGATATC
*
53511307 TCGCACACTAAGTGCCATACA-TAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCA-A-ATTAGCCGAAGCTATATCAAA
* *
53511347 TCACACACTAAGTGCCATATATAGCCGAAGCTATATCAAA
1 TCGCACACTAAGTGCCAAAT-TAGCCGAAGCTATATCAAA
*
53511387 TCGCACACTATGTGCCACAATTAGCC
1 TCGCACACTAAGTGCCA-AATTAGCC
53511413 AATTTTGTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
38 1 0.02
40 54 0.95
41 2 0.04
ACGTcount: A:0.35, C:0.29, G:0.14, T:0.22
Consensus pattern (39 bp):
TCGCACACTAAGTGCCAAATTAGCCGAAGCTATATCAAA
Found at i:53516488 original size:13 final size:15
Alignment explanation
Indices: 53516458--53516489 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
53516448 CCATTTCATG
53516458 CATTTCATCAATAAT
1 CATTTCATCAATAAT
53516473 CATTTCAT-AA-AAT
1 CATTTCATCAATAAT
53516486 CATT
1 CATT
53516490 ATTTCATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (15 bp):
CATTTCATCAATAAT
Found at i:53517152 original size:16 final size:17
Alignment explanation
Indices: 53517120--53517163 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
53517110 TTCTATTTCA
*
53517120 AATTCAC-ATTCAGTTC
1 AATTCACAATTCAATTC
53517136 AA-TCACAATTCAATTC
1 AATTCACAATTCAATTC
53517152 AATTCA-AATTCA
1 AATTCACAATTCA
53517164 CTTTCCACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 4 0.16
16 18 0.72
17 3 0.12
ACGTcount: A:0.41, C:0.23, G:0.02, T:0.34
Consensus pattern (17 bp):
AATTCACAATTCAATTC
Found at i:53518122 original size:12 final size:12
Alignment explanation
Indices: 53518094--53518132 Score: 53
Period size: 11 Copynumber: 3.2 Consensus size: 12
53518084 CTTACTAATC
53518094 TATGTCCAAAC-
1 TATGTCCAAACA
53518105 TATGTCCAAACA
1 TATGTCCAAACA
*
53518117 TATGTCAAAAGCA
1 TATGTCCAAA-CA
53518130 TAT
1 TAT
53518133 CAAGCATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 11 0.44
12 9 0.36
13 5 0.20
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (12 bp):
TATGTCCAAACA
Found at i:53527749 original size:40 final size:40
Alignment explanation
Indices: 53527655--53527879 Score: 251
Period size: 40 Copynumber: 5.6 Consensus size: 40
53527645 TATTCGAATG
*
53527655 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
53527696 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
53527736 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
53527776 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
53527816 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
53527856 ACATCCGGGCTAAGA-CCTGAAGGC
1 ATATCCGGGCTAAGATCC-GAAGGC
53527880 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.02
40 125 0.79
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:53527835 original size:80 final size:80
Alignment explanation
Indices: 53527655--53527915 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
53527645 TATTCGAATG
* * * *
53527655 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
53527720 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
53527736 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
53527801 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
53527816 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCTGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
53527881 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
53527895 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
53527916 ATTACTTGAG
Statistics
Matches: 154, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 94 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:53527869 original size:120 final size:120
Alignment explanation
Indices: 53527655--53527915 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 120
53527645 TATTCGAATG
* * *
53527655 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
53527720 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
53527776 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * * *
53527839 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCTGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
53527895 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
53527916 ATTACTTGAG
Statistics
Matches: 121, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 56 0.46
121 31 0.26
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:53535020 original size:7 final size:7
Alignment explanation
Indices: 53534992--53535031 Score: 53
Period size: 7 Copynumber: 5.3 Consensus size: 7
53534982 TTTACTTTAC
53534992 TATATATA
1 TATATA-A
53535000 TAATATAA
1 T-ATATAA
53535008 TAATATAA
1 T-ATATAA
53535016 TATATAA
1 TATATAA
53535023 TATATAA
1 TATATAA
53535030 TA
1 TA
53535032 AAAATAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 15 0.48
8 11 0.35
9 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TATATAA
Found at i:53535037 original size:20 final size:19
Alignment explanation
Indices: 53534995--53535034 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
53534985 ACTTTACTAT
*
53534995 ATATATAATATAATAATATA
1 ATATATAATAT-ATAATAAA
53535015 ATATATAATATATAATAAA
1 ATATATAATATATAATAAA
53535034 A
1 A
53535035 ATAATAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
ATATATAATATATAATAAA
Found at i:53535705 original size:20 final size:19
Alignment explanation
Indices: 53535659--53535705 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
53535649 AGTCTTTTTT
*
53535659 CCTAATTTCTCCTAATTAAG
1 CCTAA-TTCACCTAATTAAG
53535679 -CTAAATTCACCTAATTAAAG
1 CCT-AATTCACCTAATT-AAG
53535699 CCTAATT
1 CCTAATT
53535706 AAACACACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 12 0.52
20 9 0.39
21 2 0.09
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.36
Consensus pattern (19 bp):
CCTAATTCACCTAATTAAG
Found at i:53539630 original size:46 final size:46
Alignment explanation
Indices: 53539484--53539706 Score: 194
Period size: 46 Copynumber: 4.8 Consensus size: 46
53539474 TATGGGTAAG
*
53539484 GTGCCGATGCCATGTCCTAGACATGGTCTTACACT-GACTATCATCTCA
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGACT-TCATCTCA
* * *
53539532 -TAGCCAATGCATGTCCCAGACATGTCTTAAACT-GGCTTACATCTCGA
1 GT-GCCGATGCATGTCCCAGACATGTCTTACACTAGACTT-CATCTC-A
*
53539579 G-GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTT-GTCTCA
1 GTGCCGATGCATGTCCCAGACATGTCTTACACTAG-ACTTCATCTCA
* * *
53539624 GTGCCGATGCCATGTCCTTA-ACATGGTCTTACATTA-ACTTC--CATAA
1 GTGCCGATG-CATGTCC-CAGACAT-GTCTTACACTAGACTTCATC-TCA
53539670 TGTGGCCGATGCATGTCCCAGACATGTCTTACACTAG
1 -GT-GCCGATGCATGTCCCAGACATGTCTTACACTAG
53539707 CACACACAAG
Statistics
Matches: 146, Mismatches: 13, Indels: 33
0.76 0.07 0.17
Matches are distributed among these distances:
45 4 0.03
46 75 0.51
47 40 0.27
48 27 0.18
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GTGCCGATGCATGTCCCAGACATGTCTTACACTAGACTTCATCTCA
Found at i:53543061 original size:40 final size:40
Alignment explanation
Indices: 53542967--53543151 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
53542957 TATTCGAATG
*
53542967 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * * *
53543008 ATAACCGGACTAAGATTCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
53543048 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
53543088 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
53543128 ATATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
53543152 CTTGTGCAAG
Statistics
Matches: 121, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
39 2 0.02
40 90 0.74
41 28 0.23
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:53543140 original size:80 final size:81
Alignment explanation
Indices: 53542967--53543151 Score: 241
Period size: 80 Copynumber: 2.3 Consensus size: 81
53542957 TATTCGAATG
* * *
53542967 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATTCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
*
53543032 ATTCGTGCGAGTTGCT
66 ATTCATGCGAGTTGCT
* * *
53543048 ATATCCGAGCTAAGACCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGTGACTATAACCGGACTAAGAT-CCGAAGG
* *
53543111 CATTTATGCTAG-TGACT
65 CATTCATGCGAGTTG-CT
*
53543128 ATATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
53543152 CTTGTGCAAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 3 0.03
80 57 0.63
81 31 0.34
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCT
Found at i:53546297 original size:17 final size:17
Alignment explanation
Indices: 53546275--53546317 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
53546265 CAAAAATACC
*
53546275 AAAAGAAAGGAAAAATA
1 AAAAGAAAGGAAAAAGA
53546292 AAAAGAAAGGAAAAAGA
1 AAAAGAAAGGAAAAAGA
53546309 AAAAGAAAG
1 AAAAGAAAG
53546318 CTACATTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (17 bp):
AAAAGAAAGGAAAAAGA
Found at i:53547620 original size:43 final size:43
Alignment explanation
Indices: 53547559--53547799 Score: 356
Period size: 43 Copynumber: 5.6 Consensus size: 43
53547549 TATATGTGAT
*
53547559 ATCAATATGTAATTATGTGTAAGACCACGTCTGGGATGTTGCC
1 ATCAATATGTAATTATGTGTAAGACCACGTCTGGGATGTTGGC
*
53547602 ATCAATATGTCATTATGTGTAAGACCACGTCTGGGATGTTGGC
1 ATCAATATGTAATTATGTGTAAGACCACGTCTGGGATGTTGGC
*
53547645 ATCAATATGTCATTATGTGTAAGACCACGTCTGGGATGTTGGC
1 ATCAATATGTAATTATGTGTAAGACCACGTCTGGGATGTTGGC
** * *
53547688 ATTGATATGTAATTATGTGTAAGACCACATCTGGGACGTTGGC
1 ATCAATATGTAATTATGTGTAAGACCACGTCTGGGATGTTGGC
* * **
53547731 ATCGATATGTAATTATGTGTAAGACCACGTTTGGGACATTGGC
1 ATCAATATGTAATTATGTGTAAGACCACGTCTGGGATGTTGGC
* * *
53547774 ATCGATATGTGATTACGTGTAAGACC
1 ATCAATATGTAATTATGTGTAAGACC
53547800 CTGTGTAACA
Statistics
Matches: 185, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 185 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
ATCAATATGTAATTATGTGTAAGACCACGTCTGGGATGTTGGC
Found at i:53549092 original size:42 final size:43
Alignment explanation
Indices: 53549024--53549124 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
53549014 GTCACGATGT
* * ** *
53549024 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACACGTAAATCAATATCGATGCCGATATCCCAGACAG
*
53549067 GGTCTTACACG-AAATCAGATA-CGATGCCGATATCCCAGACAT
1 GGTCTTACACGTAAATCA-ATATCGATGCCGATATCCCAGACAG
*
53549109 GGTCTTATACGTAAAT
1 GGTCTTACACGTAAAT
53549125 ATCAATCAAG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
42 32 0.65
43 17 0.35
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAATATCGATGCCGATATCCCAGACAG
Found at i:53562887 original size:13 final size:14
Alignment explanation
Indices: 53562869--53562905 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
53562859 ATAAATCACT
53562869 TTTTTTTTTC-GAA
1 TTTTTTTTTCGGAA
53562882 TTTTTTTTTCGGAA
1 TTTTTTTTTCGGAA
53562896 TTTTTTTTTC
1 TTTTTTTTTC
53562906 AAACTTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.11, C:0.08, G:0.08, T:0.73
Consensus pattern (14 bp):
TTTTTTTTTCGGAA
Found at i:53562887 original size:14 final size:15
Alignment explanation
Indices: 53562868--53562904 Score: 60
Period size: 13 Copynumber: 2.6 Consensus size: 15
53562858 CATAAATCAC
53562868 TTTTTTTTTTC-GAA
1 TTTTTTTTTTCGGAA
53562882 -TTTTTTTTTCGGAA
1 TTTTTTTTTTCGGAA
53562896 TTTTTTTTT
1 TTTTTTTTT
53562905 CAAACTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 10 0.48
14 3 0.14
15 8 0.38
ACGTcount: A:0.11, C:0.05, G:0.08, T:0.76
Consensus pattern (15 bp):
TTTTTTTTTTCGGAA
Found at i:53566644 original size:33 final size:33
Alignment explanation
Indices: 53566583--53566646 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
53566573 GCAATATTAG
* *
53566583 TGTGGGCCCTAGCCCAATACTGTGCAGTATCAA
1 TGTGGGCCCTAGCCCAATACAGTACAGTATCAA
* * *
53566616 TGTGGGCCTTAGCCCATTTCAGTACAGTATC
1 TGTGGGCCCTAGCCCAATACAGTACAGTATC
53566647 CAATATACAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (33 bp):
TGTGGGCCCTAGCCCAATACAGTACAGTATCAA
Found at i:53569640 original size:27 final size:27
Alignment explanation
Indices: 53569609--53569680 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 27
53569599 TAGTTTACAA
* * * *
53569609 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCCTATAGGATAG
*
53569636 AATTACTAAAATGCCCCTATAGGATAG
1 AATTACTAAAATACCCCTATAGGATAG
*
53569663 AATTACCAAAATACCCCT
1 AATTACTAAAATACCCCT
53569681 GGTTTGCAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (27 bp):
AATTACTAAAATACCCCTATAGGATAG
Found at i:53569693 original size:27 final size:27
Alignment explanation
Indices: 53569663--53569805 Score: 131
Period size: 27 Copynumber: 5.6 Consensus size: 27
53569653 TATAGGATAG
53569663 AATTACCAAAATACCCCTGGTTTGCAA
1 AATTACCAAAATACCCCTGGTTTGCAA
*
53569690 AATTACC-AAA-A----T--TTTACAA
1 AATTACCAAAATACCCCTGGTTTGCAA
* * *
53569709 AATTACCAAAACACCCATGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGCAA
* *
53569736 AATTACCAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCCTGGTTTGCAA
* **
53569763 AATTACCAAAATACCCCTGATTTGTGA
1 AATTACCAAAATACCCCTGGTTTGCAA
**
53569790 AATTACTGAAATACCC
1 AATTACCAAAATACCC
53569806 TTGTAGGGTA
Statistics
Matches: 94, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
19 13 0.14
20 3 0.03
21 2 0.02
25 2 0.02
26 3 0.03
27 71 0.76
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGCAA
Found at i:53569770 original size:54 final size:54
Alignment explanation
Indices: 53569702--53569808 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 54
53569692 TTACCAAAAT
*
53569702 TTTACAAAATTACCAAAACACCCATGGTTTGTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACCAAAACACCCATGATTTGTAAAATTACCAAAATACCCTTGG
* * * **
53569756 TTTACAAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTTG
1 TTTACAAAATTACCAAAACACCCATGATTTGTAAAATTACCAAAATACCCTTG
53569809 TAGGGTAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
TTTACAAAATTACCAAAACACCCATGATTTGTAAAATTACCAAAATACCCTTGG
Found at i:53569854 original size:27 final size:27
Alignment explanation
Indices: 53569789--53569903 Score: 160
Period size: 27 Copynumber: 4.3 Consensus size: 27
53569779 CTGATTTGTG
*
53569789 AAATTACTGAAATACCCTTGTAGGGT-
1 AAATTACCGAAATACCCTTGTAGGGTA
**
53569815 AAATTACCGAAATACTATTGTAGGGTA
1 AAATTACCGAAATACCCTTGTAGGGTA
* *
53569842 GAATTACTGAAATACCCTTGTAGGGTA
1 AAATTACCGAAATACCCTTGTAGGGTA
* *
53569869 AAATTACCGAGATACCCTTGTGGGGTA
1 AAATTACCGAAATACCCTTGTAGGGTA
53569896 AAATTACC
1 AAATTACC
53569904 ATTTTGCCCC
Statistics
Matches: 77, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 23 0.30
27 54 0.70
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.29
Consensus pattern (27 bp):
AAATTACCGAAATACCCTTGTAGGGTA
Found at i:53571516 original size:40 final size:40
Alignment explanation
Indices: 53571413--53571502 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
53571403 AATGCCTCGT
* * **
53571413 ACACTAAGTGCTATACATAGCTGAAGCTATCTCAAATCGC
1 ACACTAAGTGCCATATATAGCCAAAGCTATCTCAAATCGC
* *
53571453 ACACTAAGTGCCATATATAGCCAAAGCTATGTCGAATCGC
1 ACACTAAGTGCCATATATAGCCAAAGCTATCTCAAATCGC
53571493 ACACTAAGTG
1 ACACTAAGTG
53571503 ACACAATTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (40 bp):
ACACTAAGTGCCATATATAGCCAAAGCTATCTCAAATCGC
Found at i:53575583 original size:30 final size:30
Alignment explanation
Indices: 53575549--53575645 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
53575539 TAAACTAAAA
53575549 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
53575579 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
53575609 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
53575639 TGAGCTA
1 TGAGCTA
53575646 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:53577934 original size:41 final size:40
Alignment explanation
Indices: 53577771--53577951 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
53577761 AATCAAGCAT
** ** * *
53577771 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
53577809 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
53577849 CTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
53577889 CTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
53577930 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
53577952 CATTCGAGTA
Statistics
Matches: 119, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 11 0.09
39 18 0.15
40 60 0.50
41 27 0.23
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:53585831 original size:40 final size:40
Alignment explanation
Indices: 53585748--53585927 Score: 188
Period size: 40 Copynumber: 4.5 Consensus size: 40
53585738 AATCAAGCAT
** ** * *
53585748 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
53585786 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
53585826 CTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
53585866 CTTC-GGATCTTAGTCC-GATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
53585906 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
53585928 CATTCGAGTA
Statistics
Matches: 117, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
38 11 0.09
39 26 0.22
40 73 0.62
41 7 0.06
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:53589125 original size:30 final size:30
Alignment explanation
Indices: 53589054--53589136 Score: 80
Period size: 30 Copynumber: 2.7 Consensus size: 30
53589044 CTTTTGTTTC
* *
53589054 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
*
53589085 AATTTC-TTTTCGTTCTCTTTTTCAATGTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
53589114 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
53589137 GCTTTTCAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 5 0.11
30 31 0.70
31 8 0.18
ACGTcount: A:0.13, C:0.20, G:0.02, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:53589136 original size:18 final size:18
Alignment explanation
Indices: 53589087--53589142 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
53589077 CACTCTCAAA
* *
53589087 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
53589104 TTTCAATGTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
53589122 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
53589141 TT
1 TT
53589143 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.18, G:0.05, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:53589143 original size:12 final size:12
Alignment explanation
Indices: 53589112--53589136 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
53589102 TTTTTCAATG
53589112 TCATTTTCTTTT
1 TCATTTTCTTTT
53589124 TCATTTTCTTTT
1 TCATTTTCTTTT
53589136 T
1 T
53589137 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:53589245 original size:6 final size:5
Alignment explanation
Indices: 53589205--53589267 Score: 51
Period size: 5 Copynumber: 12.0 Consensus size: 5
53589195 CTCTTGCCTC
53589205 TCTTT TCTTT T-TATT TCATTT TCATTT TC--T TCTTT TGCTTT TGCTTTT
1 TCTTT TCTTT TCT-TT TC-TTT TC-TTT TCTTT TCTTT T-CTTT T-C-TTT
53589253 TCTTT TCTTT TCTTT
1 TCTTT TCTTT TCTTT
53589268 GTTTTCTCTT
Statistics
Matches: 51, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
3 3 0.06
4 1 0.02
5 24 0.47
6 18 0.35
7 5 0.10
ACGTcount: A:0.05, C:0.17, G:0.03, T:0.75
Consensus pattern (5 bp):
TCTTT
Found at i:53591386 original size:17 final size:17
Alignment explanation
Indices: 53591327--53591386 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
53591317 GAGACAGCCA
* * *
53591327 CCATACATGCACTTAAG
1 CCATTCATGCATTTAAT
53591344 CCATTCATGCATTCT-AT
1 CCATTCATGCATT-TAAT
*
53591361 -CATCCCATGCATTTAAT
1 CCAT-TCATGCATTTAAT
53591378 CCATTCATG
1 CCATTCATG
53591387 GACCAGCCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 4 0.12
17 26 0.76
18 4 0.12
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (17 bp):
CCATTCATGCATTTAAT
Found at i:53594161 original size:30 final size:30
Alignment explanation
Indices: 53594090--53594172 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
53594080 CTTTTGTTTC
* *
53594090 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
53594121 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
53594150 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
53594173 GCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:53594172 original size:18 final size:18
Alignment explanation
Indices: 53594123--53594178 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
53594113 CACTCTCAAA
* *
53594123 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
53594140 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
53594158 TTTCATTTTCTTTTTGCTT
1 TTTCATTTTCATTTT-CTT
53594177 TT
1 TT
53594179 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:53594179 original size:12 final size:12
Alignment explanation
Indices: 53594148--53594172 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
53594138 TTTTTCAATC
53594148 TCATTTTCTTTT
1 TCATTTTCTTTT
53594160 TCATTTTCTTTT
1 TCATTTTCTTTT
53594172 T
1 T
53594173 GCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:53594190 original size:12 final size:12
Alignment explanation
Indices: 53594175--53594205 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
53594165 TTCTTTTTGC
53594175 TTTTCAAAGGCT
1 TTTTCAAAGGCT
53594187 TTTTCAAAGGCT
1 TTTTCAAAGGCT
53594199 TTTTCAA
1 TTTTCAA
53594206 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Done.