Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 189 of 425
Found at i:57401227 original size:47 final size:44
Alignment explanation
Indices: 57401038--57401252 Score: 173
Period size: 46 Copynumber: 4.7 Consensus size: 44
57401028 GTATCGATTC
* * * * * *
57401038 CATGTCCCAAACATGGTCTTACACTGACACATCTC-GTAGTCTATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCATCACAAT-GTCGATG
* * * * * *
57401083 CATGTCCCAGACATGTCTTACACTGACTTATGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCA--TCACAATGTCGATG
* * *
57401129 TATGTCCCAGACATGTCTTACACTAGCACTCATCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACT-G-GCTCATCACAATGTCGATG
57401175 CCATGTCCCAGACATGATCTTACACTGGCTC-TCACAATGTGGCTGATG
1 -CATGTCCCAGACATG-TCTTACACTGGCTCATCACAATGT--C-GATG
*
57401223 CATGTCCCAGACATGTCTTACACTAGCTCA
1 CATGTCCCAGACATGTCTTACACTGGCTCA
57401253 CAATAGCCCA
Statistics
Matches: 143, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
44 14 0.10
45 21 0.15
46 59 0.41
47 32 0.22
48 17 0.12
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCTCATCACAATGTCGATG
Found at i:57404715 original size:43 final size:43
Alignment explanation
Indices: 57404668--57404827 Score: 139
Period size: 43 Copynumber: 3.7 Consensus size: 43
57404658 TGTGATTACA
57404668 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTATG
* * ** * *
57404711 TGTAAGACCATGTCTAGGACATTGGTATCACTAAT-CGATT-TCG
1 TGTAAGACCATGTCTGGGACATTGGCAT-TGTATTGAGATTAT-G
* * * * **
57404754 TGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATGAGATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGAGATTATG
* *
57404797 TGTAAGACCATATCTGGGATA-TGGCATTGTA
1 TGTAAGACCATGTCTGGGACATTGGCATTGTA
57404828 CGAGCTTATG
Statistics
Matches: 90, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
41 1 0.01
42 9 0.10
43 77 0.86
44 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTATG
Found at i:57407416 original size:12 final size:12
Alignment explanation
Indices: 57407399--57407430 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
57407389 TCTAACTTGG
57407399 GTCACACGGCCA
1 GTCACACGGCCA
*
57407411 GTCACAAGGCCA
1 GTCACACGGCCA
57407423 GTCACACG
1 GTCACACG
57407431 CCCACGTGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.28, C:0.38, G:0.25, T:0.09
Consensus pattern (12 bp):
GTCACACGGCCA
Found at i:57411087 original size:47 final size:47
Alignment explanation
Indices: 57411030--57411347 Score: 555
Period size: 47 Copynumber: 6.8 Consensus size: 47
57411020 GTATGAGATA
*
57411030 TATATATGTGATAAGCCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
57411077 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
57411124 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
57411171 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
57411218 TATATATGTGACAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
57411265 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
57411312 TATATATGTGACAAGGCCTAATGGCCGATGTGATGA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
57411348 GAATGGCCAA
Statistics
Matches: 257, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 257 1.00
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:57411284 original size:141 final size:141
Alignment explanation
Indices: 57411030--57411579 Score: 758
Period size: 141 Copynumber: 3.8 Consensus size: 141
57411020 GTATGAGATA
* *
57411030 TATATATGTGATAAGCCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
57411095 GAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
57411160 ATGTGAAAGTG
131 ATGTGAAAGTG
*
57411171 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
1 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* **
57411236 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
57411301 ATGTGAAAGTG
131 ATGTGAAAGTG
57411312 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGACAAGGCCTAATGGCCGA--TG-T--G-AT-G--AATGTGA--AA-GT----GT-
* * * *
57411377 CATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
49 -ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
57411442 TAATGGCCCATGTGATGAATGTGAAAGTG
113 TAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
57411471 CATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
57411536 GAGTGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
57411580 TCCCGAAGGG
Statistics
Matches: 367, Mismatches: 24, Indels: 36
0.86 0.06 0.08
Matches are distributed among these distances:
141 215 0.59
143 4 0.01
144 1 0.00
146 1 0.00
147 4 0.01
148 3 0.01
150 14 0.04
152 3 0.01
153 4 0.01
154 1 0.00
156 1 0.00
157 4 0.01
159 112 0.31
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (141 bp):
TATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTG
Found at i:57411354 original size:18 final size:18
Alignment explanation
Indices: 57411331--57411365 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
57411321 GACAAGGCCT
*
57411331 AATGGCCGATGTGATGAG
1 AATGGCCAATGTGATGAG
57411349 AATGGCCAATGTGATGA
1 AATGGCCAATGTGATGA
57411366 ATGTGAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.11, G:0.34, T:0.23
Consensus pattern (18 bp):
AATGGCCAATGTGATGAG
Found at i:57411362 original size:65 final size:65
Alignment explanation
Indices: 57411284--57411412 Score: 222
Period size: 65 Copynumber: 2.0 Consensus size: 65
57411274 GATAAGGCCT
* * *
57411284 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAG
1 AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGACAAGGCCTAATGGCCGATGTGATGAG
*
57411349 AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGA
1 AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGACAAGGCCTAATGGCCGATGTGATGA
57411413 ATGTGAAAGT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.26
Consensus pattern (65 bp):
AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGACAAGGCCTAATGGCCGATGTGATGAG
Found at i:57411365 original size:112 final size:112
Alignment explanation
Indices: 57411245--57411459 Score: 403
Period size: 112 Copynumber: 1.9 Consensus size: 112
57411235 CTAATGGCTG
* *
57411245 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
57411310 TGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAGAATGGCCA
66 TGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAGAATGGCCA
57411357 ATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
57411422 TGTATATATGTGACAAGGCCTAATGGCCCATGTGATGA
66 TGTATATATGTGACAAGGCCTAATGGCCCATGTGATGA
57411460 ATGTGAAAGT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 100 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (112 bp):
ATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAGAATGGCCA
Found at i:57411375 original size:159 final size:159
Alignment explanation
Indices: 57411190--57411506 Score: 535
Period size: 159 Copynumber: 2.0 Consensus size: 159
57411180 GACAAGGCCT
* * * *
57411190 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCTGATGTGATGAA
1 AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGACAAGGCCTAATGGCCGATGTGATGAA
* * *
57411255 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
66 TGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATATG
* *
57411320 TGACAAGGCCTAATGGCCGATGTGATGAG
131 TGACAAGGCCGAATGGCCAATGTGATGAG
*
57411349 AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAA
1 AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGACAAGGCCTAATGGCCGATGTGATGAA
57411414 TGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATATG
66 TGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATATG
*
57411479 TGATAAGGCCGAATGGCCAATGTGATGA
131 TGACAAGGCCGAATGGCCAATGTGATGA
57411507 ATGTGAAAGT
Statistics
Matches: 147, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
159 147 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (159 bp):
AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGACAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATATG
TGACAAGGCCGAATGGCCAATGTGATGAG
Found at i:57411395 original size:206 final size:206
Alignment explanation
Indices: 57411143--57411552 Score: 703
Period size: 206 Copynumber: 2.0 Consensus size: 206
57411133 GATAAGGCCT
* * *
57411143 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAA
1 AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGACAAGGCCTAATGGCCGATGTGATGAA
** *
57411208 TGTGAAAGTGTATATATGTGACAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATG
66 TGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATATG
* * *
57411273 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCC
131 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCC
*
57411338 GATGTGATGAG
196 AATGTGATGAG
*
57411349 AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAA
1 AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGACAAGGCCTAATGGCCGATGTGATGAA
57411414 TGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATATG
66 TGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATATG
* *
57411479 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCC
131 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCC
57411544 AATGTGATG
196 AATGTGATG
57411553 GATGTGAAAG
Statistics
Matches: 191, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
206 191 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (206 bp):
AATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGACAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATATG
TGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCC
AATGTGATGAG
Found at i:57411402 original size:47 final size:47
Alignment explanation
Indices: 57411348--57411579 Score: 365
Period size: 47 Copynumber: 4.9 Consensus size: 47
57411338 GATGTGATGA
* *
57411348 GAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCC
1 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
57411395 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCC
1 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
57411442 TAATGGCCCATGTGATGAATGTGAAAGTGCATATATGTGATAAGGCC
1 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
57411489 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
57411536 GAGTGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
57411580 TCCCGAAGGG
Statistics
Matches: 171, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 171 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:57411551 original size:253 final size:253
Alignment explanation
Indices: 57411095--57411575 Score: 863
Period size: 253 Copynumber: 1.9 Consensus size: 253
57411085 TGATAAGGCC
57411095 GAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGA
1 GAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGA
* *
57411160 ATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATAT
* ** *
57411225 GTGACAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
131 GTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
* *
57411290 CGATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTGATGA
196 CAATGTGATGAATGTGAAAGTGTATAAATGTGACAAGGCCTAATGGCCGATGTGATGA
57411348 GAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGA
1 GAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGA
57411413 ATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATAT
66 ATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATAT
* *
57411478 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGC
131 GTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
*
57411543 CAATGTGATGGATGTGAAAGTGTATAAATGTGA
196 CAATGTGATGAATGTGAAAGTGTATAAATGTGA
57411576 TAAGTCCCGA
Statistics
Matches: 217, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
253 217 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (253 bp):
GAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCCATGTGATGAATGTGAAAGTGCATATAT
GTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
CAATGTGATGAATGTGAAAGTGTATAAATGTGACAAGGCCTAATGGCCGATGTGATGA
Found at i:57411756 original size:37 final size:37
Alignment explanation
Indices: 57411697--57411779 Score: 130
Period size: 37 Copynumber: 2.2 Consensus size: 37
57411687 CCGAGCTCTA
*
57411697 AAGACCCGATGACTACGAGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACCACGAGTGGAGATTATGTCCGGGT
* *
57411734 AAGACCCGATGACCACGGGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACCACGAGTGGAGATTATGTCCGGGT
*
57411771 AAGCCCCGA
1 AAGACCCGA
57411780 ACAAAAGGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.25, C:0.23, G:0.33, T:0.19
Consensus pattern (37 bp):
AAGACCCGATGACCACGAGTGGAGATTATGTCCGGGT
Found at i:57413280 original size:40 final size:40
Alignment explanation
Indices: 57413231--57413436 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
57413221 TCTTCGGAAT
* * *
57413231 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
57413270 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTC-GGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
57413309 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTC-GGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
57413348 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * *
57413388 TTAGCCCGGATATAATCATTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
57413428 TTAGCCCGG
1 TTAGCCCGG
57413437 GTATCATTCA
Statistics
Matches: 142, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 68 0.48
40 74 0.52
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:57413324 original size:79 final size:79
Alignment explanation
Indices: 57413222--57413436 Score: 229
Period size: 79 Copynumber: 2.7 Consensus size: 79
57413212 AACCGAGCTT
* * * * * **
57413222 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCACAA-TGCCTTCGGGTCTTAGCCCGGATATAAT
*
57413286 AACTTGCACAAATGC
65 AACTAGCACAAATGC
* * *
57413301 CTTC-GGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTC-GGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAAT
* *
57413364 CACTAGCATAAATGC
65 AACTAGCACAAATGC
* * * *
57413379 CTTCGGGACTTAGCCCGGATATAATCATTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCA-CAATGCCTTCGGGTCTTAGCCCGG
57413437 GTATCATTCA
Statistics
Matches: 111, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
78 37 0.33
79 60 0.54
80 14 0.13
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACCACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAATA
ACTAGCACAAATGC
Found at i:57421359 original size:40 final size:40
Alignment explanation
Indices: 57421310--57421515 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
57421300 TCTTCGGAAT
* * *
57421310 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
57421349 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
57421389 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
57421429 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
* * *
57421469 TTAGCCCGGATATATC-A-TAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
57421507 TTAGCCCGG
1 TTAGCCCGG
57421516 GTATCATTCA
Statistics
Matches: 144, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
38 30 0.21
39 5 0.03
40 108 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:57423729 original size:22 final size:22
Alignment explanation
Indices: 57423704--57423774 Score: 63
Period size: 22 Copynumber: 3.1 Consensus size: 22
57423694 GATAAGGCCT
57423704 AATGGCCAATGTGATGAATGTG
1 AATGGCCAATGTGATGAATGTG
** * *
57423726 AATGTGTATATATGTGAT-AAGGCCG
1 AATG-G-CCA-ATGTGATGAATG-TG
57423751 AATGGCCAATGTGATGAATGTG
1 AATGGCCAATGTGATGAATGTG
57423773 AA
1 AA
57423775 AGTGTATATA
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
22 14 0.39
23 5 0.14
24 5 0.14
25 12 0.33
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (22 bp):
AATGGCCAATGTGATGAATGTG
Found at i:57423740 original size:25 final size:25
Alignment explanation
Indices: 57423712--57423789 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
57423702 CTAATGGCCA
57423712 ATGTGATGAATGTGAATGTGTATAT
1 ATGTGATGAATGTGAATGTGTATAT
* * **
57423737 ATGTGAT-AAGGCCGAATG-G-CCA-
1 ATGTGATGAATG-TGAATGTGTATAT
*
57423759 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAATGTGTATAT
57423784 ATGTGA
1 ATGTGA
57423790 CAAGGCCTAA
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAATGTGTATAT
Found at i:57423885 original size:46 final size:47
Alignment explanation
Indices: 57423188--57423881 Score: 1045
Period size: 46 Copynumber: 15.0 Consensus size: 47
57423178 GGTCCCAAAN
57423188 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-A
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
*
57423234 AGGCCTAATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGACA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
* *
57423281 AGGCCGAATGGCCGATTTGATGAAT-TGAAAGTGTATATAT-TGACA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
*
57423326 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAGA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
*
57423373 A-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAGA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
*
57423419 AGGCCTAAT-GCCAAT-TGATGAATGTGAAAGTGTATATATGTGACA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
*
57423464 A-GCCGAATGGCCGATGTGATGAATGTGAAAGT-TATATATGTGACA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
57423509 AGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
*
57423555 AGGCCTAATGGCCGATGTGAGTGATGAATGTGAAAGT-TATATATGTGATA
1 AGGCCTAATGGCCGA--T--GTGATGAATGTGAAAGTGTATATATGTGACA
* *
57423605 AGG-CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
* *
57423651 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTTATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
* * *
57423698 AGGCCTAATGGCCAATGTGATGAATGTGAATGTGTATATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
* *
57423745 AGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
* * *
57423792 AGGCCTAATGGCCGATGTGATGGATGTGAAGGTGTA-ATATGTGATA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
* * * *
57423838 AGGCCGAATGGCCAATGTGATGGATGTGAAA-TGTATAAATGTGA
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
57423882 TAAGTCCCGA
Statistics
Matches: 597, Mismatches: 35, Indels: 32
0.90 0.05 0.05
Matches are distributed among these distances:
44 6 0.01
45 126 0.21
46 217 0.36
47 206 0.35
49 10 0.02
50 15 0.03
51 17 0.03
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACA
Found at i:57427027 original size:28 final size:28
Alignment explanation
Indices: 57426992--57427100 Score: 146
Period size: 29 Copynumber: 3.8 Consensus size: 28
57426982 GATGAGATCG
*
57426992 GCACTAAGTGTGCGTGCTGGAAATATAT
1 GCACTAAGTGTGCATGCTGGAAATATAT
* *
57427020 GCACTAAGTGTGCGTGCTGGAAATATAAG
1 GCACTAAGTGTGCATGCTGGAAATAT-AT
*
57427049 GCACTAAGTGTGCATGCTGGAAAAATAT
1 GCACTAAGTGTGCATGCTGGAAATATAT
* *
57427077 GACACTATGTGTGCAAGCTGGAAA
1 G-CACTAAGTGTGCATGCTGGAAA
57427101 AATACGGCAC
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
28 28 0.38
29 45 0.62
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (28 bp):
GCACTAAGTGTGCATGCTGGAAATATAT
Found at i:57427117 original size:28 final size:29
Alignment explanation
Indices: 57426993--57427123 Score: 86
Period size: 29 Copynumber: 4.6 Consensus size: 29
57426983 ATGAGATCGG
* ** * *
57426993 CACTAAGTGTGCGTGCTGGAAATATATG-
1 CACTAGGTGTGCAAGCTGGAAAAATACGA
* ** * * *
57427021 CACTAAGTGTGCGTGCTGGAAATATAAGG
1 CACTAGGTGTGCAAGCTGGAAAAATACGA
* * *
57427050 CACTAAGTGTGCATGCTGGAAAAATATGA
1 CACTAGGTGTGCAAGCTGGAAAAATACGA
* *
57427079 CACTATGTGTGCAAGCTGGAAAAATACGG
1 CACTAGGTGTGCAAGCTGGAAAAATACGA
* *
57427108 CAC-GGGTGTGCGAGCT
1 CACTAGGTGTGCAAGCT
57427124 CGGAGGGTAT
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
28 37 0.41
29 53 0.59
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.24
Consensus pattern (29 bp):
CACTAGGTGTGCAAGCTGGAAAAATACGA
Found at i:57435111 original size:29 final size:29
Alignment explanation
Indices: 57435079--57435187 Score: 155
Period size: 29 Copynumber: 3.8 Consensus size: 29
57435069 ATGAGATCGG
*
57435079 CACTAAGTGTGCGTGCTGGAAATATATGA
1 CACTAAGTGTGCATGCTGGAAATATATGA
* * *
57435108 CACTAAGTGTGCGTGCTGGAAATATAAGG
1 CACTAAGTGTGCATGCTGGAAATATATGA
*
57435137 CACTAAGTGTGCATGCTGGAAAAATATGA
1 CACTAAGTGTGCATGCTGGAAATATATGA
* *
57435166 CACTATGTGTGCAAGCTGGAAA
1 CACTAAGTGTGCATGCTGGAAA
57435188 AATACGGCAC
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 72 1.00
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.25
Consensus pattern (29 bp):
CACTAAGTGTGCATGCTGGAAATATATGA
Found at i:57435206 original size:58 final size:58
Alignment explanation
Indices: 57435076--57435198 Score: 183
Period size: 58 Copynumber: 2.1 Consensus size: 58
57435066 GTGATGAGAT
* * ** *
57435076 CGGCACTAAGTGTGCGTGCTGGAAATATATGACACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATA
* *
57435134 AGGCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATA
57435192 CGGCACT
1 CGGCACT
57435199 GGGTGTGCGA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.24
Consensus pattern (58 bp):
CGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATA
Found at i:57437270 original size:38 final size:38
Alignment explanation
Indices: 57437225--57437332 Score: 135
Period size: 38 Copynumber: 2.8 Consensus size: 38
57437215 AATCCGGGCT
* *
57437225 TAAAGACCCGATGACTATAAGTAGAGATTGTGTCCGGG
1 TAAAGACCCGATGACTATAAGTAGAGATTATGCCCGGG
* *
57437263 TAAAGACCCGATGACTATATGTGGAGATTATGCCCGGG
1 TAAAGACCCGATGACTATAAGTAGAGATTATGCCCGGG
* * ** *
57437301 TAAAGATCCGATGGCTATGTGCAGAGATTATG
1 TAAAGACCCGATGACTATAAGTAGAGATTATG
57437333 TCTGAATTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.25
Consensus pattern (38 bp):
TAAAGACCCGATGACTATAAGTAGAGATTATGCCCGGG
Found at i:57437447 original size:40 final size:40
Alignment explanation
Indices: 57437403--57437505 Score: 170
Period size: 40 Copynumber: 2.6 Consensus size: 40
57437393 TGATCCAGGT
*
57437403 TAAGTCCCGAAGAGCATTCGTGTTGCTGTTACATCCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTGCTGTTACATCCGGGC
*
57437443 TAAGTCCCGAAGAGCATTCGTGCTGGTGTTACATCCGGGC
1 TAAGTCCCGAAGAGCATTCGTGCTGCTGTTACATCCGGGC
* *
57437483 TAAGTCCTGAAGGGCATTCGTGC
1 TAAGTCCCGAAGAGCATTCGTGC
57437506 CAATGATGTG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGAGCATTCGTGCTGCTGTTACATCCGGGC
Found at i:57437716 original size:25 final size:25
Alignment explanation
Indices: 57437674--57437728 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
57437664 TGTGTAATAA
*
57437674 CGAATGAATATAGTCACTATGTGTG
1 CGAATGAATATAGACACTATGTGTG
*
57437699 CGAATGAAT-TGAGACACTGTGTGTG
1 CGAATGAATAT-AGACACTATGTGTG
57437724 CGAAT
1 CGAAT
57437729 TCTTTAACCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (25 bp):
CGAATGAATATAGACACTATGTGTG
Found at i:57437772 original size:28 final size:28
Alignment explanation
Indices: 57437741--57437860 Score: 83
Period size: 28 Copynumber: 4.5 Consensus size: 28
57437731 TTTAACCGAG
* *
57437741 CACTATGTGTGCGAGATCAGTTAGTGGA
1 CACTATGTGTGCGAGATCGGTCAGTGGA
57437769 CAC--TGTGT---AGATCGGTCAGTGGA
1 CACTATGTGTGCGAGATCGGTCAGTGGA
* * * ***
57437792 CACTGTGTGTGCGA-ATTC-TTTAACCGA
1 CACTATGTGTGCGAGA-TCGGTCAGTGGA
*
57437819 GCACTATGTGTGCGAGATCGGTCAGTGGG
1 -CACTATGTGTGCGAGATCGGTCAGTGGA
*
57437848 CACTGTGTGTGCG
1 CACTATGTGTGCG
57437861 GATTTCGTTT
Statistics
Matches: 68, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
23 16 0.24
25 5 0.07
26 5 0.07
27 5 0.07
28 33 0.49
29 4 0.06
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.28
Consensus pattern (28 bp):
CACTATGTGTGCGAGATCGGTCAGTGGA
Found at i:57437781 original size:23 final size:23
Alignment explanation
Indices: 57437754--57437799 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
57437744 TATGTGTGCG
*
57437754 AGATCAGTTAGTGGACACTGTGT
1 AGATCAGTCAGTGGACACTGTGT
*
57437777 AGATCGGTCAGTGGACACTGTGT
1 AGATCAGTCAGTGGACACTGTGT
57437800 GTGCGAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.28
Consensus pattern (23 bp):
AGATCAGTCAGTGGACACTGTGT
Found at i:57442388 original size:28 final size:27
Alignment explanation
Indices: 57442325--57442394 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
57442315 ATAGTGAGTC
57442325 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
57442352 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
57442380 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57442395 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:57443994 original size:47 final size:47
Alignment explanation
Indices: 57443941--57444705 Score: 1260
Period size: 47 Copynumber: 16.3 Consensus size: 47
57443931 ACAAGATATG
57443941 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
57443988 TATATGTGACAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
57444035 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
57444082 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
57444129 TATATGTGACAAGGCCGAATGGCCCATGTGATAAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
57444176 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATCTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
57444223 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
57444270 TATATGTGATAACGTCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
57444317 TATATGTGACAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
57444364 TATATGTGACAAGGCCTAATGGGCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
57444411 TATATGTGATAAGGCCTAATGGCGAATGTGATGAATGTGAAATTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
57444458 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
57444505 TATATGTGACAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
57444552 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
57444599 TATATGAGATAAGACCTAATGGCCAATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
57444646 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
57444693 TAAATGTGATAAG
1 TATATGTGATAAG
57444706 TCCCGAAGGG
Statistics
Matches: 673, Mismatches: 45, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 673 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:57446642 original size:35 final size:37
Alignment explanation
Indices: 57446602--57446672 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
57446592 TATTATTTTG
57446602 AAATAATAA-TT-TATATATTTATCTTATTTATATTA
1 AAATAATAATTTATATATATTTATCTTATTTATATTA
57446637 AAATAATAATTTATATATATTTATCTTATTTATATT
1 AAATAATAATTTATATATATTTATCTTATTTATATT
57446673 TATCTTCTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
35 9 0.26
36 2 0.06
37 23 0.68
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (37 bp):
AAATAATAATTTATATATATTTATCTTATTTATATTA
Found at i:57446670 original size:15 final size:15
Alignment explanation
Indices: 57446647--57446678 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
57446637 AAATAATAAT
57446647 TTATATATATTTATC
1 TTATATATATTTATC
*
57446662 TTATTTATATTTATC
1 TTATATATATTTATC
57446677 TT
1 TT
57446679 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:57446722 original size:14 final size:14
Alignment explanation
Indices: 57446703--57446752 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
57446693 AAATTATACT
57446703 CTAAACCTGAAACC
1 CTAAACCTGAAACC
* * *
57446717 CTAAACTTGAGATC
1 CTAAACCTGAAACC
57446731 CTAAACCCT-AAACC
1 CTAAA-CCTGAAACC
57446745 CTAAACCT
1 CTAAACCT
57446753 ATAACCCCAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
13 3 0.10
14 24 0.83
15 2 0.07
ACGTcount: A:0.40, C:0.34, G:0.06, T:0.20
Consensus pattern (14 bp):
CTAAACCTGAAACC
Found at i:57446758 original size:14 final size:13
Alignment explanation
Indices: 57446703--57446764 Score: 52
Period size: 14 Copynumber: 4.5 Consensus size: 13
57446693 AAATTATACT
57446703 CTAAACCTGAAACC
1 CTAAACCT-AAACC
* * *
57446717 CTAAACTTGAGATC
1 CTAAACCT-AAACC
57446731 CTAAACCCTAAACC
1 CTAAA-CCTAAACC
57446745 CTAAACCTATAACC
1 CTAAACCTA-AACC
*
57446759 CCAAAC
1 CTAAAC
57446765 TTTAAAACCA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
13 4 0.10
14 33 0.85
15 2 0.05
ACGTcount: A:0.42, C:0.35, G:0.05, T:0.18
Consensus pattern (13 bp):
CTAAACCTAAACC
Found at i:57448392 original size:54 final size:54
Alignment explanation
Indices: 57448293--57448404 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
57448283 CACACCGGCA
* * ** * *
57448293 TGTGACCAAAGTTAAAGAGTTACACGGGCACGGACACTGGCTGGGACATGGCCG
1 TGTGACCAAAGTCAAAGAGTTACACGGGCACAGACACCAGCTGGGACACGACCG
* *
57448347 TGTGACCCAAGTCAAAGAGTTACACGGGCACAGACACCAGTTGGGACACGACCG
1 TGTGACCAAAGTCAAAGAGTTACACGGGCACAGACACCAGCTGGGACACGACCG
57448401 TGTG
1 TGTG
57448405 TCACTATTTC
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.29, C:0.24, G:0.31, T:0.16
Consensus pattern (54 bp):
TGTGACCAAAGTCAAAGAGTTACACGGGCACAGACACCAGCTGGGACACGACCG
Found at i:57448847 original size:37 final size:37
Alignment explanation
Indices: 57448797--57448870 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
57448787 CGTGTCTAGA
57448797 ATACATGTCATTATATAACCTGTGATAGTGTGATAAC
1 ATACATGTCATTATATAACCTGTGATAGTGTGATAAC
57448834 ATACATGTCATTATATAACCTGTGATAGTGTGATAAC
1 ATACATGTCATTATATAACCTGTGATAGTGTGATAAC
57448871 TCCTGACTCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (37 bp):
ATACATGTCATTATATAACCTGTGATAGTGTGATAAC
Found at i:57451118 original size:24 final size:24
Alignment explanation
Indices: 57451072--57451166 Score: 131
Period size: 24 Copynumber: 4.0 Consensus size: 24
57451062 GCTTTATCAT
*
57451072 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
57451097 ATAACTGAGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
57451121 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
57451144 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
57451167 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 23 0.37
24 29 0.46
25 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:57451147 original size:23 final size:23
Alignment explanation
Indices: 57451093--57451165 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
57451083 CCTAGCCTCT
* *
57451093 TTTAATAACTGAGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
57451116 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
57451140 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
57451163 TTT
1 TTT
57451166 TGCACTTCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:57451241 original size:20 final size:20
Alignment explanation
Indices: 57451216--57451262 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
57451206 TTATGAATAC
57451216 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
57451236 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
57451256 ACCATGT
1 ATCATGT
57451263 TTACTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:57455532 original size:27 final size:27
Alignment explanation
Indices: 57455500--57455628 Score: 179
Period size: 27 Copynumber: 4.8 Consensus size: 27
57455490 TTAGGCTAAT
* * *
57455500 ATTACCGTTTTACCCTCGATTTATAGA
1 ATTACCATTTTACCCTCGATTTACAAA
*
57455527 ATTACCATTTTACCCTCGATTTACAGA
1 ATTACCATTTTACCCTCGATTTACAAA
57455554 ATTACCATTTTACCCTCGATTTACAAA
1 ATTACCATTTTACCCTCGATTTACAAA
*
57455581 ATTACCATTTTACCCTC-AGTTTTCAAA
1 ATTACCATTTTACCCTCGA-TTTACAAA
* *
57455608 ATTATCGTTTTACCCTCGATT
1 ATTACCATTTTACCCTCGATT
57455629 GTGAAATTAC
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
26 1 0.01
27 92 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (27 bp):
ATTACCATTTTACCCTCGATTTACAAA
Found at i:57455650 original size:27 final size:26
Alignment explanation
Indices: 57455620--57455788 Score: 119
Period size: 27 Copynumber: 6.3 Consensus size: 26
57455610 TATCGTTTTA
* **
57455620 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
57455647 CCCTG-TAGGATAGAATTACCAAAATA-
1 CCCTGAT-TG-TAAAATTACCAAAATAC
*
57455673 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
57455700 CCCTAGTTTGTAAAATTACCGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * * * *
57455727 CACTGGTTTGTGAAATTATCGAAATA-
1 CCCT-GATTGTAAAATTACCAAAATAC
*
57455753 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTAAAATTACCAAAATAC
57455781 CCCTGATT
1 CCCTGATT
57455789 TACAAAATTA
Statistics
Matches: 115, Mismatches: 20, Indels: 15
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.01
26 26 0.23
27 83 0.72
28 5 0.04
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:57455675 original size:53 final size:53
Alignment explanation
Indices: 57455618--57455782 Score: 156
Period size: 53 Copynumber: 3.1 Consensus size: 53
57455608 ATTATCGTTT
* * *
57455618 TACCCTCGATTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAA
1 TACCCTAGTTTGTGAAATTACTGAAATACCCCTAGTAGG-TAAAATTACCAAAA
* ** ** *
57455671 TACCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAA
1 TACCCTAGTTTGTGAAATTACTGAAATACCCCTAGTAGGTAAAATTACCAAAA
* * **
57455724 TACCACTGGTTTGTGAAATTA-TCGAAATA-CCCTCAATTTGTAAAATTACCAAAA
1 TACC-CTAGTTTGTGAAATTACT-GAAATACCCCT-AGTAGGTAAAATTACCAAAA
57455778 TACCC
1 TACCC
57455783 CTGATTTACA
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
53 49 0.53
54 44 0.47
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (53 bp):
TACCCTAGTTTGTGAAATTACTGAAATACCCCTAGTAGGTAAAATTACCAAAA
Found at i:57455764 original size:54 final size:54
Alignment explanation
Indices: 57455660--57455810 Score: 180
Period size: 54 Copynumber: 2.8 Consensus size: 54
57455650 TGTAGGATAG
* * * *
57455660 AATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCCTGGTTTGTAAAATTATCGAAATACCCTCTAATTTGTAA
* *
57455713 AATTACCGAAATACCACTGGTTTGTGAAATTATCGAAATACCCTC-AATTTGTAA
1 AATTACCAAAATACC-CTGGTTTGTAAAATTATCGAAATACCCTCTAATTTGTAA
* ** *
57455767 AATTACCAAAATACCCCTGATTTACAAAATTATAGAAATACCCT
1 AATTACCAAAATA-CCCTGGTTTGTAAAATTATCGAAATACCCT
57455811 TGACTTTCTA
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
53 14 0.17
54 66 0.80
55 3 0.04
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCTGGTTTGTAAAATTATCGAAATACCCTCTAATTTGTAA
Found at i:57455789 original size:27 final size:26
Alignment explanation
Indices: 57455660--57455798 Score: 145
Period size: 27 Copynumber: 5.2 Consensus size: 26
57455650 TGTAGGATAG
57455660 AATTACCAAAATA-CCCTAGTTTGTAA
1 AATTACCAAAATACCCCTA-TTTGTAA
57455686 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTA-TTTGTAA
* * * *
57455713 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCT-ATTTGTAA
* * *
57455740 AATTATCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCC-CTATTTGTAA
**
57455767 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCT-ATTTGTAA
57455794 AATTA
1 AATTA
57455799 TAGAAATACC
Statistics
Matches: 95, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
26 14 0.15
27 80 0.84
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (26 bp):
AATTACCAAAATACCCCTATTTGTAA
Found at i:57455805 original size:27 final size:27
Alignment explanation
Indices: 57455739--57455868 Score: 113
Period size: 27 Copynumber: 4.7 Consensus size: 27
57455729 CTGGTTTGTG
* ** **
57455739 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTATAGAAATACCCTTGATTTACA
* *
57455766 AAATTACCA-AAATACCCCTGATTTACA
1 AAATTA-TAGAAATACCCTTGATTTACA
57455793 AAATTATAGAAATACCCTTGACTTT-CTA
1 AAATTATAGAAATACCCTTGA-TTTAC-A
* *
57455821 GAAATTATAGAAATACCATTGGTTTACA
1 -AAATTATAGAAATACCCTTGATTTACA
57455849 AAATTACT-GAAATACCCTTG
1 AAATTA-TAGAAATACCCTTG
57455869 GTTTGTAGAT
Statistics
Matches: 84, Mismatches: 12, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
26 1 0.01
27 54 0.64
28 9 0.11
29 20 0.24
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTATAGAAATACCCTTGATTTACA
Found at i:57455956 original size:26 final size:27
Alignment explanation
Indices: 57455927--57455985 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
57455917 CCCCTAATAT
*
57455927 GTAAAAAGACCGTAA-AGCCATGTAGG
1 GTAAAAAGACCGTAATACCCATGTAGG
** * *
57455953 GTAAAGTGACCGTAATACCCTTGTATG
1 GTAAAAAGACCGTAATACCCATGTAGG
57455980 GTAAAA
1 GTAAAA
57455986 TGACGAATAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (27 bp):
GTAAAAAGACCGTAATACCCATGTAGG
Found at i:57455983 original size:27 final size:26
Alignment explanation
Indices: 57455927--57455989 Score: 72
Period size: 27 Copynumber: 2.4 Consensus size: 26
57455917 CCCCTAATAT
* *
57455927 GTAAAAAGACCGTAAAGCCATGTAGG
1 GTAAAATGACCGTAAACCCATGTAGG
* * *
57455953 GTAAAGTGACCGTAATACCCTTGTATG
1 GTAAAATGACCGTAA-ACCCATGTAGG
57455980 GTAAAATGAC
1 GTAAAATGAC
57455990 GAATATGTCG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 13 0.43
27 17 0.57
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (26 bp):
GTAAAATGACCGTAAACCCATGTAGG
Found at i:57456868 original size:25 final size:25
Alignment explanation
Indices: 57456799--57456868 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
57456789 AGGAAGTGCT
* * *
57456799 AAAAGGGCTCTGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACAG
*
57456824 AAAAGGGCTTTGCCCTAGTTTATCAG
1 AAAAGGGCTTTGCCCCAGTTTA-CAG
57456850 -AAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
57456869 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 37 0.95
26 2 0.05
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACAG
Found at i:57456881 original size:24 final size:23
Alignment explanation
Indices: 57456799--57456895 Score: 77
Period size: 25 Copynumber: 4.0 Consensus size: 23
57456789 AGGAAGTGCT
* * *
57456799 AAAAGGGCTCTGCCCCAATTTACC
1 AAAAGGGCTTTGCCCC-AGTTATC
*
57456823 GAAAAGGGCTTTGCCCTAGTTTATC
1 -AAAAGGGCTTTGCCCCAG-TTATC
*
57456848 AGAAAGGGCTTTGCCCCAGTTATT
1 A-AAAGGGCTTTGCCCCAGTTATC
**
57456872 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTTTGCC-CCAGTTAT
57456896 ACATTCATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 8
0.79 0.11 0.11
Matches are distributed among these distances:
23 4 0.07
24 14 0.23
25 42 0.70
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.26
Consensus pattern (23 bp):
AAAAGGGCTTTGCCCCAGTTATC
Found at i:57456953 original size:42 final size:42
Alignment explanation
Indices: 57456894--57456973 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 42
57456884 GCCTCCAGTT
*
57456894 ATACATTCATTGACATTACATGTGATATTGAAATGGGCTTGC
1 ATACATCCATTGACATTACATGTGATATTGAAATGGGCTTGC
57456936 ATACATCCATTGACATTACATGTGATATTGAAATGGGC
1 ATACATCCATTGACATTACATGTGATATTGAAATGGGC
57456974 CTAAGGGCCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34
Consensus pattern (42 bp):
ATACATCCATTGACATTACATGTGATATTGAAATGGGCTTGC
Found at i:57457036 original size:31 final size:31
Alignment explanation
Indices: 57456997--57457235 Score: 392
Period size: 31 Copynumber: 7.8 Consensus size: 31
57456987 CGTTTACAGT
57456997 AAAA-GCTTCGGCCCAGTGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
*
57457027 AAAAGGCTTCAGCCCAGTGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
57457058 AAAAGGCTTCGGCCCAGTGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
57457089 AAAAGGCTTCGGCCCAGTGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
* *
57457120 AAAAGGCTTCAGCCCAGTGATATGATTTATT
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
57457151 AAAAGGCTTCGGCCCAGTGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
* * *
57457182 AAAGGGCTTTGGTCCAGTGATATGATTTATG
1 AAAAGGCTTCGGCCCAGTGATATGATTTATG
* *
57457213 GAAAGGCTTTGGCCCAGT-ATATG
1 AAAAGGCTTCGGCCCAGTGATATG
57457236 TCAAGACCAA
Statistics
Matches: 196, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
30 9 0.05
31 187 0.95
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAAGGCTTCGGCCCAGTGATATGATTTATG
Found at i:57461010 original size:49 final size:49
Alignment explanation
Indices: 57460941--57461201 Score: 368
Period size: 49 Copynumber: 5.6 Consensus size: 49
57460931 GTATATAATA
57460941 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
57460990 ATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
57461039 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
57461088 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAA--T----GTG---
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
57461128 A-A-A-GTGATAAGGCCTAATGGCCGACT-TGATGAATGCGTAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGTGAAAGTGTAT
*
57461174 ATATATGTGATAAGGCCTAATGACCGAT
1 ATATATGTGATAAGGCCTAATGGCCGAT
57461202 ATATGTGATA
Statistics
Matches: 192, Mismatches: 7, Indels: 27
0.85 0.03 0.12
Matches are distributed among these distances:
37 28 0.15
38 2 0.01
39 1 0.01
40 1 0.01
43 5 0.03
46 1 0.01
47 2 0.01
48 2 0.01
49 150 0.78
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:57461170 original size:37 final size:37
Alignment explanation
Indices: 57461094--57461170 Score: 120
Period size: 37 Copynumber: 2.1 Consensus size: 37
57461084 GTATATATAT
*
57461094 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
*
57461131 GTGATAAGGCCTAATGGCCGACT-TGATGAATGCGTAA
1 GTGATAAGGCCTAATGGCCGA-TGTGATGAATGCGAAA
57461168 GTG
1 GTG
57461171 TATATATATG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (37 bp):
GTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAA
Found at i:57461203 original size:26 final size:26
Alignment explanation
Indices: 57461174--57461227 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
57461164 GTAAGTGTAT
57461174 ATATATGTGATAAGGCCTAATGACCG
1 ATATATGTGATAAGGCCTAATGACCG
57461200 ATATATGTGATAAGGCCTAATGACCG
1 ATATATGTGATAAGGCCTAATGACCG
57461226 AT
1 AT
57461228 GTGATGAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (26 bp):
ATATATGTGATAAGGCCTAATGACCG
Found at i:57461212 original size:161 final size:167
Alignment explanation
Indices: 57461039--57461374 Score: 506
Period size: 161 Copynumber: 2.0 Consensus size: 167
57461029 GAAAGTGTAT
*
57461039 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAACGTGAAAATGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGACCGATGTGATGAACGTGAAAATGTATATATATGTGATAAGGC
57461104 CTAATGGCCGATGTGATGAA-TG-TG-A-A-A-GTGATAAGGCCTAATGGCCGACT-TGATGAAT
66 CTAATGGCCGATGTGATGAAGTGATGTATATATGTGATAAGGCCTAATGGCCGA-TGTGATGAAT
*
57461162 GCGTAAGTGTATATATATGTGATAAGGCCTAATGACCG
130 GCGAAAGTGTATATATATGTGATAAGGCCTAATGACCG
* *
57461200 ATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGACCGATGTGATGAACGTGAAAATGTATATATATGTGATAAGGC
57461265 CTAATGGCCGATGTGATGAATGTGAAACTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
66 CTAATGGCCGATGTGATGAA-GTG--A-TG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
57461330 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
125 TGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGACCG
57461373 AT
1 AT
57461375 GTGATGAATG
Statistics
Matches: 156, Mismatches: 6, Indels: 14
0.89 0.03 0.08
Matches are distributed among these distances:
161 82 0.53
163 2 0.01
167 2 0.01
170 1 0.01
171 1 0.01
172 2 0.01
173 66 0.42
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (167 bp):
ATATATGTGATAAGGCCTAATGACCGATGTGATGAACGTGAAAATGTATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAAGTGATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
CGAAAGTGTATATATATGTGATAAGGCCTAATGACCG
Found at i:57461254 original size:75 final size:75
Alignment explanation
Indices: 57461131--57461276 Score: 240
Period size: 75 Copynumber: 1.9 Consensus size: 75
57461121 GAATGTGAAA
* *
57461131 GTGATAAGGCCTAATGGCCGACTTGATGAATGCGTAAGTGTATATATATGTGATAAGGCCTAATG
1 GTGATAAGGCCTAATGACCGACTTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATG
57461196 ACCGATATAT
66 ACCGATATAT
*
57461206 GTGATAAGGCCTAATGACCGA-TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
1 GTGATAAGGCCTAATGACCGACT-TGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAAT
*
57461270 GGCCGAT
65 GACCGAT
57461277 GTGATGAATG
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
74 1 0.02
75 65 0.98
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (75 bp):
GTGATAAGGCCTAATGACCGACTTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATG
ACCGATATAT
Found at i:57461255 original size:49 final size:49
Alignment explanation
Indices: 57461200--57461450 Score: 466
Period size: 49 Copynumber: 5.1 Consensus size: 49
57461190 CTAATGACCG
*
57461200 ATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
57461249 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAACTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
57461298 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
57461347 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
57461396 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
57461445 ATATAT
1 ATATAT
57461451 ATGTGGTAAA
Statistics
Matches: 196, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 196 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.31
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:57461573 original size:37 final size:36
Alignment explanation
Indices: 57461518--57461603 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
57461508 AAACTTGGAA
57461518 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
57461556 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
57461593 TATGT-CGGGTA
1 TATGTCCGGGTA
57461604 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
36 7 0.15
37 36 0.77
38 4 0.09
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.27
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:57463709 original size:40 final size:40
Alignment explanation
Indices: 57463483--57463700 Score: 319
Period size: 40 Copynumber: 5.5 Consensus size: 40
57463473 GAGAATTGAG
* * * *
57463483 AATGATGTATCTGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
*
57463523 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTACT
1 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
*
57463563 AATGATATATCCGAGCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
*
57463603 AATGATATATCCGGTCTAAATTCCGAAGAGCATTCGTGCT
1 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
* * * *
57463643 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
* *
57463683 AGTGATGTATCCGGGCTA
1 AATGATATATCCGGGCTA
57463701 GGTCCCGAAA
Statistics
Matches: 164, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 164 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (40 bp):
AATGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
Found at i:57467388 original size:49 final size:49
Alignment explanation
Indices: 57467254--57467445 Score: 359
Period size: 49 Copynumber: 3.9 Consensus size: 49
57467244 CAGTATAATA
57467254 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
57467303 ATATATGTGA-AAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
57467351 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
57467400 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
57467446 ATAAGCCTAA
Statistics
Matches: 138, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
48 47 0.34
49 91 0.66
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:57467457 original size:36 final size:37
Alignment explanation
Indices: 57467406--57467477 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 37
57467396 GTATATATAT
*
57467406 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAA
57467443 GTGATAA-GCCTAATGGCCGACGTGATGAATGTGAA
1 GTGATAAGGCCTAATGGCCGACGTGATGAATGTGAA
57467478 GTGTATATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 27 0.79
37 7 0.21
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (37 bp):
GTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAA
Found at i:57467532 original size:49 final size:49
Alignment explanation
Indices: 57467443--57467721 Score: 243
Period size: 49 Copynumber: 6.0 Consensus size: 49
57467433 GAATGTGAAA
*
57467443 GTGATAA-GCCTAATGGCCGACGTGATGAATGTG-AAGTGTATATATAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
* *
57467490 GTGATAAGGCCTAATGACTGATGTGATGAATGTGAAAGTGTATATATA-
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
* * * * *
57467538 -TG-T--GGCC-GAT-G-TGATGAATG-TGAAAGT----GTATATATATGT
1 GTGATAAGGCCTAATGGCCGATG--TGATGAATGTGAAAGTGTATATATAT
* * ** ** * *
57467577 GAT-A-AGGCCTAATGGCCG-ATGTGATGAATGTGAAAGTGTATATATAT
1 G-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
*
57467624 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
*
57467673 GTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATATAT
1 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
57467722 ATGTGGTAAA
Statistics
Matches: 182, Mismatches: 29, Indels: 40
0.73 0.12 0.16
Matches are distributed among these distances:
38 9 0.05
41 6 0.03
42 10 0.05
43 10 0.05
44 7 0.04
46 2 0.01
47 21 0.12
48 29 0.16
49 88 0.48
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (49 bp):
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAT
Found at i:57467550 original size:36 final size:36
Alignment explanation
Indices: 57467509--57467577 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
57467499 CCTAATGACT
57467509 GATGTGATGAATGTGAAAGTGTATATATATGTGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGGCC
57467545 GATGTGATGAATGTGAAAGTGTATATATATGTG
1 GATGTGATGAATGTGAAAGTGTATATATATGTG
57467578 ATAAGGCCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.32, C:0.03, G:0.30, T:0.35
Consensus pattern (36 bp):
GATGTGATGAATGTGAAAGTGTATATATATGTGGCC
Found at i:57467576 original size:18 final size:18
Alignment explanation
Indices: 57467519--57467578 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
57467509 GATGTGATGA
57467519 ATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATAT
*** *
57467537 ATGTGGCCGATGTGAT-GA-
1 ATGTGAAAG-TGT-ATATAT
57467555 ATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATAT
57467573 ATGTGA
1 ATGTGA
57467579 TAAGGCCTAA
Statistics
Matches: 30, Mismatches: 8, Indels: 8
0.65 0.17 0.17
Matches are distributed among these distances:
16 2 0.07
17 4 0.13
18 18 0.60
19 4 0.13
20 2 0.07
ACGTcount: A:0.33, C:0.03, G:0.28, T:0.35
Consensus pattern (18 bp):
ATGTGAAAGTGTATATAT
Found at i:57467709 original size:98 final size:98
Alignment explanation
Indices: 57467540--57467721 Score: 346
Period size: 98 Copynumber: 1.9 Consensus size: 98
57467530 TATATATATG
* *
57467540 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
57467605 TGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 TGTGAAAGTGTATATATATGTGATAAGGCCTAA
57467638 TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
1 TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
57467703 TGTGAAAGTGTATATATAT
66 TGTGAAAGTGTATATATAT
57467722 ATGTGGTAAA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 82 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (98 bp):
TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAATGGCCGACGTGATGAA
TGTGAAAGTGTATATATATGTGATAAGGCCTAA
Found at i:57467845 original size:37 final size:36
Alignment explanation
Indices: 57467790--57467876 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
57467780 AACTTGGAAA
57467790 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
57467828 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
57467865 TATGTCCGGGTA
1 TATGTCCGGGTA
57467877 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:57471668 original size:43 final size:42
Alignment explanation
Indices: 57471576--57471723 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 42
57471566 TATCCCAAAT
* * * *
57471576 ATGGTCTTACACGTTATCACA-TATTGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCA-ATTAATGATGCCAAT-TTCCAGAC
* * *
57471619 AGGGTCTTACACGAAATCAATTAATGATGCCAATTTCTCAGAG
1 ATGGTCTTACACGTAATCAATTAATGATGCCAATTTC-CAGAC
* *
57471662 ATGGTCTTGCACGTAATC--TTAATACAATGCCAATGTTCCAGAC
1 ATGGTCTTACACGTAATCAATTAAT--GATGCCAAT-TTCCAGAC
* *
57471705 ATGGTCTTATATGTAATCA
1 ATGGTCTTACACGTAATCA
57471724 CATCTCGATA
Statistics
Matches: 84, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
41 5 0.06
42 3 0.04
43 73 0.87
44 3 0.04
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCAATTAATGATGCCAATTTCCAGAC
Found at i:57472130 original size:31 final size:31
Alignment explanation
Indices: 57472076--57472136 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
57472066 CATTTTACAC
*
57472076 GTAACACCCCGTACCCGAGACCGTTGCCGGT
1 GTAACACCCCGTACCCGAGACCGTCGCCGGT
* **
57472107 GTAACACCCCTTACCCGTTACCGTCGCCGG
1 GTAACACCCCGTACCCGAGACCGTCGCCGG
57472137 AACAGGATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.18, C:0.41, G:0.23, T:0.18
Consensus pattern (31 bp):
GTAACACCCCGTACCCGAGACCGTCGCCGGT
Found at i:57473501 original size:71 final size:71
Alignment explanation
Indices: 57473417--57473580 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
57473407 CGATTTGTCT
57473417 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
57473482 CTTTCA
66 CTTTCA
57473488 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
57473553 CTTTCA
66 CTTTCA
57473559 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
57473581 GATACACCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:57473618 original size:71 final size:70
Alignment explanation
Indices: 57473417--57473614 Score: 256
Period size: 71 Copynumber: 2.8 Consensus size: 70
57473407 CGATTTGTCT
* * * * *
57473417 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTG-CATACACCTCGAATCACACATGCGACCTAGCTACATTTAT
57473482 CTTTCA
65 CTTTCA
* * * * *
57473488 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTG-CATACACCTCGAATCACACATGCGACCTAGCTACATTTAT
57473553 CTTTCA
65 CTTTCA
* *
57473559 CGTAGCTCTCTTGTCTACATGG-G-ATACACCTCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTGCATACACCTCGAATCACACATGCGACCTAGCTAC
57473615 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
68 26 0.22
70 1 0.01
71 93 0.77
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGCATACACCTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:57476281 original size:40 final size:40
Alignment explanation
Indices: 57476236--57476420 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 40
57476226 CTTGCACAAG
* * *
57476236 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
57476276 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
57476316 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
57476356 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
57476397 GCCTTCGGGACTTAGCCCAGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
57476421 CATTCGAATA
Statistics
Matches: 122, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 93 0.76
41 28 0.23
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:57481650 original size:40 final size:40
Alignment explanation
Indices: 57481458--57481643 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
57481448 TCGAATGATG
* * *
57481458 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
57481498 TCAGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
57481538 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
57481578 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
57481619 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
57481644 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 117 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:57481650 original size:80 final size:79
Alignment explanation
Indices: 57481511--57481666 Score: 185
Period size: 80 Copynumber: 2.0 Consensus size: 79
57481501 GGACTAAGAT
**
57481511 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
57481575 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* * *
57481591 CCGAAGGCA-TCTGTGCGAGTTATTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAG
1 CCGAAGGCATTC-GTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAG
*
57481653 CTATATCCGGTTAA
63 CTAAATCCGGTTAA
57481667 ACTCCGAAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
79 11 0.17
80 53 0.80
81 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:57483694 original size:50 final size:48
Alignment explanation
Indices: 57483519--57483697 Score: 216
Period size: 50 Copynumber: 3.6 Consensus size: 48
57483509 CTGATACGCA
* *
57483519 TAGTAGTCTGCACTTAGTACTACACAGGTGAC-CAACAATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACTCAAC-ATT-GGTACACG
* * * * *
57483568 TAGTAGCTTGCACTTAGTACCACACACGTGACCTCACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CTCAACAT-TGGTACACG
* *
57483618 TAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACTCAACA-T-TGGTACACG
57483668 TAGTAGCCTGCACTTAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
57483698 TATTCACAAT
Statistics
Matches: 111, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
49 32 0.29
50 75 0.68
51 4 0.04
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACTCAACATTGGTACACG
Found at i:57486392 original size:27 final size:27
Alignment explanation
Indices: 57486362--57486438 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
57486352 TCATCTTACC
* *
57486362 CTACATGGGTATGTCGGTCATTTTAA-A
1 CTACAAGGGTATGTCGGT-AATTTAACA
* *
57486389 CTACAAGGGTATTTTGGTAATTTAACA
1 CTACAAGGGTATGTCGGTAATTTAACA
* *
57486416 CTACAAGGGTATTTCGATAATTT
1 CTACAAGGGTATGTCGGTAATTT
57486439 TACAAATTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.14
27 37 0.86
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (27 bp):
CTACAAGGGTATGTCGGTAATTTAACA
Found at i:57486573 original size:80 final size:79
Alignment explanation
Indices: 57486421--57486786 Score: 393
Period size: 80 Copynumber: 4.6 Consensus size: 79
57486411 TAACACTACA
* *
57486421 AGGGTATTTC-GATAATTTTACAAAT-TAGGGT-TGTTTCAGTTATTTTACAAATCAGGGGTATT
1 AGGGTATTTCAG-TAATTTTAC-AATCGAGGGTAT-TTT-AGTAATTTTACAAA-CAGGGGTATT
*
57486483 TCGATAATTTTACAAATTG
61 TCGGTAATTTTACAAATTG
* ** *
57486502 AGGGTATTTCAGTAATTTCACAATCGAGGGTATTTTAGTAACATTACAAATTAGGGGTATTTCGG
1 AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTTAGTAATTTTACAAA-CAGGGGTATTTCGG
*
57486567 TAATTTTACAAATCG
65 TAATTTTACAAATTG
* *
57486582 AGGGTATTTTAGTAATTTTACAATCGAGGGTATTTT-GATAATTTTATAAATC-GAGGGTATTTC
1 AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTTAG-TAATTTTACAAA-CAG-GGGTATTTC
* * *
57486645 AGTAAATTTACAAACTG
63 GGTAATTTTACAAATTG
* * * *
57486662 AGGGTATTTC-GATAATTTTACAAATCGAGGGTATTTTGGTGATTTTACAAACCGGGGTACTTCG
1 AGGGTATTTCAG-TAATTTTAC-AATCGAGGGTATTTTAGTAATTTTACAAACAGGGGTATTTCG
57486726 GTAATTTTACAAATTG
64 GTAATTTTACAAATTG
* * * *
57486742 AGGGTATTTCGGTAATTTTACAAACTGAAGGTAGTTTAGTAATTT
1 AGGGTATTTCAGTAATTTTACAATC-GAGGGTATTTTAGTAATTT
57486787 ATCTTTATTA
Statistics
Matches: 244, Mismatches: 30, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
79 6 0.02
80 182 0.75
81 53 0.22
82 3 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (79 bp):
AGGGTATTTCAGTAATTTTACAATCGAGGGTATTTTAGTAATTTTACAAACAGGGGTATTTCGGT
AATTTTACAAATTG
Found at i:57486774 original size:27 final size:26
Alignment explanation
Indices: 57486394--57486774 Score: 327
Period size: 27 Copynumber: 14.2 Consensus size: 26
57486384 TTAAACTACA
* * * **
57486394 AGGGTATTTTGGTAATTTAACACTACA
1 AGGGTATTTCGGTAATTTTACA-AATG
* *
57486421 AGGGTATTTCGATAATTTTACAAATT
1 AGGGTATTTCGGTAATTTTACAAATG
* * * *
57486447 AGGGTTGTTTCAGTTATTTTACAAATC
1 AGGG-TATTTCGGTAATTTTACAAATG
*
57486474 AGGGGTATTTCGATAATTTTACAAATTG
1 A-GGGTATTTCGGTAATTTTACAAA-TG
* *
57486502 AGGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAAT-G
** ** *
57486528 AGGGTATTTTAGTAACATTACAAATT
1 AGGGTATTTCGGTAATTTTACAAATG
57486554 AGGGGTATTTCGGTAATTTTACAAATCG
1 A-GGGTATTTCGGTAATTTTACAAAT-G
**
57486582 AGGGTATTTTAGTAATTTTAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAAT-G
* * *
57486608 AGGGTATTTTGATAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAAT-G
* *
57486635 AGGGTATTTCAGTAAATTTACAAACTG
1 AGGGTATTTCGGTAATTTTACAAA-TG
*
57486662 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAAT-G
* * *
57486689 AGGGTATTTTGGTGATTTTACAAACCG
1 AGGGTATTTCGGTAATTTTACAAA-TG
*
57486716 -GGGTACTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAA-TG
57486742 AGGGTATTTCGGTAATTTTACAAACTG
1 AGGGTATTTCGGTAATTTTACAAA-TG
*
57486769 AAGGTA
1 AGGGTA
57486775 GTTTAGTAAT
Statistics
Matches: 288, Mismatches: 54, Indels: 24
0.79 0.15 0.07
Matches are distributed among these distances:
25 1 0.00
26 71 0.25
27 209 0.73
28 7 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAAATG
Found at i:57486785 original size:107 final size:107
Alignment explanation
Indices: 57486394--57486786 Score: 397
Period size: 107 Copynumber: 3.7 Consensus size: 107
57486384 TTAAACTACA
* * * * * *
57486394 AGGGTATTTTGGTAATTTAAC-ACTACAAGGGTATTTC-GATAATTTTACAAATTAGGGTTGTTT
1 AGGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTCAG-TAATTTTACAAATGAGGG-TATTT
* * * *
57486457 CAGTTATTTTACAAATC-AGGGGTATTTCGATAATTTTACAAATTG
63 CAGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTACAAATCG
* * * ** * *
57486502 AGGGTATTTCAGTAATTTCAC-AATCGAGGGTATTTTAGTAACATTACAAATTAGGGGTATTTCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATGA-GGGTATTTCA
*
57486566 GTAATTTTACAAATCGAGGGTATTTTAGTAATTTTAC-AATCG
65 GTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATCG
* * * *
57486608 AGGGTATTTTGATAATTTTATAAATCGAGGGTATTTCAGTAAATTTACAAACTGAGGGTATTTC-
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAA-TGAGGGTATTTCA
* *
57486672 GATAATTTTACAAATCGAGGGTATTTTGGTGATTTTACAAACCG
65 G-TAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATCG
* * * *
57486716 -GGGTACTTCGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACTGAAGGTAGTTT-
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAA-TGAGGGTA-TTTC
57486779 AGTAATTT
64 AGTAATTT
57486787 ATCTTTATTA
Statistics
Matches: 241, Mismatches: 35, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
106 21 0.09
107 185 0.77
108 35 0.15
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (107 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATGAGGGTATTTCAG
TAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATCG
Found at i:57488369 original size:79 final size:80
Alignment explanation
Indices: 57488260--57488412 Score: 222
Period size: 79 Copynumber: 1.9 Consensus size: 80
57488250 TACTCGTTCG
*
57488260 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTT-GGGATCTTAACCCGGA
57488324 TTTAGTAACTCGCACC
65 TTTAGTAACTCGCACC
* * **
57488340 AATGCCTTCGGG-CTTAGCCCGGGAT-TAGTAACTCGCACAAATGCCTTTGGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAGCCC-GGATATAGTAACTCGCACAAATGCCTTGGGATCTTAACCCGGA
57488403 TTTAGTAACT
65 TTTAGTAACT
57488413 TAGGACAAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
78 3 0.05
79 48 0.73
80 15 0.23
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTGGGATCTTAACCCGGAT
TTAGTAACTCGCACC
Found at i:57488372 original size:39 final size:40
Alignment explanation
Indices: 57488260--57488441 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
57488250 TACTCGTTCG
*
57488260 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACA
* *
57488300 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACA
57488340 AATGCCTTCGGG-CTTAGCCCGGGA-TTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCC-GGATTTAGTAACTCGCACA
* * * *
57488379 AATGCCTT-TGGATCTTAGTCCGGATTTAGTAACTTAGGACA
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACA
*
57488420 AA-GCCTTCAGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
57488442 TCATCATTCG
Statistics
Matches: 124, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACA
Found at i:57488426 original size:79 final size:80
Alignment explanation
Indices: 57488263--57488441 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 80
57488253 TCGTTCGAAT
* *
57488263 GCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTT
1 GCCTTCGGG-CTTAGCCCGGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTT
* *
57488327 AGTAACTCGCACCAAT
65 AGTAACTAGCACCAAA
* **
57488343 GCCTTCGGGCTTAGCCCGGGAT-TAGTAACTCGCACAAATGCCTT-TGGATCTTAGTCCGGATTT
1 GCCTTCGGGCTTAGCCCGGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTT
*
57488406 AGTAACTTAGGA-CAAA
65 AGTAAC-TAGCACCAAA
*
57488422 GCCTTCAGGACTTAGCCCGG
1 GCCTTC-GGGCTTAGCCCGG
57488442 TCATCATTCG
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 56 0.65
80 27 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGCTTAGCCCGGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTA
GTAACTAGCACCAAA
Found at i:57499044 original size:69 final size:70
Alignment explanation
Indices: 57498928--57499084 Score: 185
Period size: 72 Copynumber: 2.2 Consensus size: 70
57498918 CATCATGTGT
* * ** * * *
57498928 ACAAGAGAGCTACGAGATACTATGTAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-CC
1 ACAAGAGAGCTACGAGAGACGATAAAGTAGCTAGGTCACATGTGTGATTCAAGGGAAGGA-CACC
57498990 ATGTAG
65 ATGTAG
* *
57498996 ACAAGAGAGCTACGAGAGAGGATAAATGTAGCTAGGTCACATGTGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGAGACGATAAA-GTAGCTAGGTCACATGTGTGATT-CAAGGGAAGGACAC
57499061 CATGTAG
64 CATGTAG
57499068 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
57499085 TAAATTGGCT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
68 21 0.28
69 21 0.28
70 1 0.01
71 1 0.01
72 31 0.41
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (70 bp):
ACAAGAGAGCTACGAGAGACGATAAAGTAGCTAGGTCACATGTGTGATTCAAGGGAAGGACACCA
TGTAG
Found at i:57502402 original size:43 final size:43
Alignment explanation
Indices: 57502306--57502419 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 43
57502296 ATCGAGATGT
* * *
57502306 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTATTGA
* *
57502349 GATTACGTGTAAGACCATGTTTGGGATATTAGCATCGCTAATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTAGCATCG-T-ATTGA
* * *
57502394 -TTTA-GTGTAAGACCCTATCTGGGACA
1 GATTACGTGTAAGACCATGTCTGGGACA
57502420 GCGACATCAA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 50 0.85
44 4 0.07
45 5 0.08
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTATTGA
Found at i:57511018 original size:27 final size:28
Alignment explanation
Indices: 57510962--57511031 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
57510952 AAACTTGTAC
57510962 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
57510990 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
57511017 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
57511032 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:57518892 original size:27 final size:28
Alignment explanation
Indices: 57518836--57518905 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
57518826 AAATTTGTAC
57518836 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
57518864 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
57518891 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
57518906 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:57532616 original size:18 final size:19
Alignment explanation
Indices: 57532589--57532653 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 19
57532579 TGATACGTGG
*
57532589 GATATCATATACATGAT-T
1 GATATGATATACATGATAT
57532607 GATATGATATGCACATGATAT
1 GATATGATAT--ACATGATAT
57532628 G-TATGATATACACATGATAT
1 GATATGATAT--ACATGATAT
57532648 G-TATGA
1 GATATGA
57532654 AATGCACATG
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.21
20 31 0.74
21 2 0.05
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.35
Consensus pattern (19 bp):
GATATGATATACATGATAT
Found at i:57532624 original size:20 final size:20
Alignment explanation
Indices: 57532599--57532665 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
57532589 GATATCATAT
57532599 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
57532619 ACATGATATGTATGATATAC
1 ACATGATATGTATGATATGC
*
57532639 ACATGATATGTATGAAATGC
1 ACATGATATGTATGATATGC
57532659 ACATGAT
1 ACATGAT
57532666 GTATTCTTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:57532793 original size:52 final size:52
Alignment explanation
Indices: 57532715--57532876 Score: 260
Period size: 52 Copynumber: 3.2 Consensus size: 52
57532705 GAGGAAGTGC
57532715 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
*
57532767 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* *
57532819 AAAAGGGCTT-TGCCCAAGTTTACCGAAAAGGG-TTTTGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
57532867 AAAAGAGGCT
1 AAAAG-GGCT
57532877 AGGCCTCCAG
Statistics
Matches: 105, Mismatches: 4, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
48 5 0.05
49 9 0.09
50 9 0.09
51 21 0.20
52 61 0.58
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:57532840 original size:25 final size:26
Alignment explanation
Indices: 57532715--57532863 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
57532705 GAGGAAGTGC
57532715 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
57532741 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
57532767 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
57532793 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
57532819 AAAAGGGCTT-TGCCCAAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
57532844 AAAAGGG-TTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
57532864 ATTAAAAGAG
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
24 2 0.02
25 27 0.25
26 81 0.74
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:57539493 original size:23 final size:23
Alignment explanation
Indices: 57539467--57539512 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
57539457 TTAGGGTCTA
*
57539467 GGTTTTGCCATTTTCTTCCTTTT
1 GGTTTAGCCATTTTCTTCCTTTT
* * *
57539490 GGTTTAGTCTTTTTCTTTCTTTT
1 GGTTTAGCCATTTTCTTCCTTTT
57539513 CTTTTCCAGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.04, C:0.17, G:0.13, T:0.65
Consensus pattern (23 bp):
GGTTTAGCCATTTTCTTCCTTTT
Found at i:57540699 original size:20 final size:20
Alignment explanation
Indices: 57540666--57540740 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
57540656 ATACGTGGGA
57540666 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
57540683 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
*
57540704 TATGATATACACATGATATG
1 TATGATATGCACATGATATG
*
57540724 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
57540741 GTATTCATAA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.16
20 41 0.80
21 2 0.04
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:57540870 original size:52 final size:52
Alignment explanation
Indices: 57540790--57540951 Score: 251
Period size: 52 Copynumber: 3.2 Consensus size: 52
57540780 GAGGAAGTGC
57540790 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTT
* *
57540842 AAAAGGGCTTATGCCCCAGTTTATCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTT
* *
57540894 GAAAGGGCTT-TGCCCCAGTTTACCGGAAAGGGCTT-TGCCCCAG-TTA-TT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTT
57540942 AAAAGAGGCT
1 AAAAG-GGCT
57540952 AGGCCTCCAG
Statistics
Matches: 102, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
48 5 0.05
49 7 0.07
50 8 0.08
51 23 0.23
52 59 0.58
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTT
Found at i:57540913 original size:25 final size:26
Alignment explanation
Indices: 57540790--57540938 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
57540780 GAGGAAGTGC
*
57540790 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
**
57540816 AAAAGGGCTTATGCCCCAGTTTATTT
1 AAAAGGGCTTATGCCCCAGTTTATCG
57540842 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
57540868 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATCG
* *
57540894 GAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATCG
*
57540919 GAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
57540939 ATTAAAAGAG
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 33 0.29
26 81 0.71
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATCG
Found at i:57554742 original size:40 final size:40
Alignment explanation
Indices: 57554648--57554845 Score: 256
Period size: 40 Copynumber: 4.9 Consensus size: 40
57554638 TTTGAATGGT
* * * * * *
57554648 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGC-GAGTTACAAA
*
57554689 ATCTGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACAAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACAAA
* *
57554729 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACAAA
57554769 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTA-CAAA
* *
57554810 A-CCGGGTTAAGTCCC-AAGGGCATTTGTGCGAATTAC
1 ATCCGGGTTAATTCCCGAA-GGCATTTGTGCGAGTTAC
57554846 TATAACCGGG
Statistics
Matches: 141, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 108 0.77
41 30 0.21
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACAAA
Found at i:57554847 original size:80 final size:80
Alignment explanation
Indices: 57554648--57554868 Score: 290
Period size: 80 Copynumber: 2.8 Consensus size: 80
57554638 TTTGAATGGT
* * * * *
57554648 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCTGGGTTAATTCCCGAAGGCAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAAATCCGGGTTAATTCCCGAAGGCAT
57554713 TTGTGCGAGTTACAAA
65 TTGTGCGAGTTACAAA
*
57554729 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGA-TACTAAATCCGGGTTAATTCCCGAAGGCAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTAAATCCGGGTTAATTCCCGAAGGCAT
57554793 TTGTGCGAGTTACCAAA
65 TTGTGCGAGTTA-CAAA
*
57554810 A-CCGGGTTAAGTCCC-AAGGGCATTTGTGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAA-GGCATTTGTGCGAATTACTA-AATCCGGGTTAAT-TCCCGAAG
57554869 ACAATCGAGC
Statistics
Matches: 126, Mismatches: 8, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
79 5 0.04
80 85 0.67
81 35 0.28
82 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGTTAATTCCCGAAGGCATT
TGTGCGAGTTACAAA
Found at i:57554853 original size:40 final size:40
Alignment explanation
Indices: 57554648--57554868 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
57554638 TTTGAATGGT
* * * *
57554648 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAA
* * * *
57554689 ATCTGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACAAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAA
*
57554729 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGA-TACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTAA
* * *
57554769 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAA
*
57554809 AACCGGGTTAAGTCCC-AAGGGCATTTGTGCGAATTACTATA
1 ATCCGGGTTAAGTCCCGAA-GGCATTTGTGCGAATTACTA-A
* *
57554850 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAAG
57554869 ACAATCGAGC
Statistics
Matches: 156, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
39 2 0.01
40 123 0.79
41 31 0.20
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAA
Found at i:57554865 original size:120 final size:121
Alignment explanation
Indices: 57554648--57554868 Score: 279
Period size: 120 Copynumber: 1.8 Consensus size: 121
57554638 TTTGAATGGT
* * * * *
57554648 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCTGGGTTAATTCCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTTAAGTCCCGAAGGCAT
* *
57554713 TTGTGCGAGTTACAAAATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGATACTAA
66 TTGTGCGAATTACAAAATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGATACTAA
* * * *
57554769 ATCCGGGTTAATTCCCGAAGGCATTTGTGC-GAGTTACCAAAACCGGGTTAAGTCCC-AAGGGCA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTTAAGTCCCGAA-GGCA
*
57554832 TTTGTGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAG
65 TTTGTGCGAATTAC-AAAATCCGGGCTAAT-TCCCGAAG
57554869 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
119 4 0.05
120 51 0.60
121 30 0.35
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (121 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTTAAGTCCCGAAGGCAT
TTGTGCGAATTACAAAATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGATACTAA
Found at i:57554881 original size:120 final size:121
Alignment explanation
Indices: 57554648--57554908 Score: 275
Period size: 120 Copynumber: 2.2 Consensus size: 121
57554638 TTTGAATGGT
* * * * * * *
57554648 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCTGGGTTAATTCCCGAAGGCAT
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTTAAGTCCCGAAGGCAT
* * * * * *
57554713 TTGTGCGAGTTACAAAATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGATA-CTAA
66 TTGTGCGAATTACAAAATCCGGGCTAATTCCCGAAGACAATCGAGCGAG-TAGCTAA
* *
57554769 ATCCGGGTTAATTCCCGAAGGCATTTGTGC-GAGTTACCAAAACCGGGTTAAGTCCC-AAGGGCA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTTAAGTCCCGAA-GGCA
* *
57554832 TTTGTGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTAGCTAT
65 TTTGTGCGAATTAC-AAAATCCGGGCTAAT-TCCCGAAGACAATCGAGCGAGTAGCTAA
57554889 ATCC-GGTTAAATT-CCGAAGG
1 ATCCGGGTT-AATTCCCGAAGG
57554909 TACGTGATTC
Statistics
Matches: 118, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
119 17 0.14
120 71 0.60
121 30 0.25
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (121 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCTAAGTGACCAAAACCGGGTTAAGTCCCGAAGGCAT
TTGTGCGAATTACAAAATCCGGGCTAATTCCCGAAGACAATCGAGCGAGTAGCTAA
Found at i:57561676 original size:363 final size:363
Alignment explanation
Indices: 57561011--57561720 Score: 1267
Period size: 363 Copynumber: 2.0 Consensus size: 363
57561001 TAACCAAAAA
57561011 ACATTAAGTCCAAAAGTACCAAAATGAGAGCATGATAGTGTAATGCAATCTCCGACAACTTCCAA
1 ACATTAAGTCCAAAAGTACCAAAATGAGAGCATGATAGTGTAATGCAATCTCCGACAACTTCCAA
* *
57561076 AATGAGTGACCTTTCGAATCACTAATAAACACGAAAAAGTAATCAAAGTAAGCAATTAAGCTTAG
66 AACGAGTGACCTTTCGAATCACTAATAAACACGAAAAAGTAAACAAAGTAAGCAATTAAGCTTAG
* *
57561141 TAAGTTTGTATAGCATAAAATTCATCTTACCATTTAATCACAATTTAAGTAATTAAACATAGTAT
131 TAAGTTCGTATAGCATAAAACTCATCTTACCATTTAATCACAATTTAAGTAATTAAACATAGTAT
57561206 AAAGCAACTCAATTTGATCCACAAGCCTAACATATATTCATCCACAAAGTTAGACATGGAAATCA
196 AAAGCAACTCAATTTGATCCACAAGCCTAACATATATTCATCCACAAAGTTAGACATGGAAATCA
* *
57561271 CAAATCTCATAGATTCAATCCTCACATGATTTACATACATACCTGTACTGGTTTATATTGAATTC
261 CAAATCTCATAGATTCAATCCTCACATCATTTACATACATACCTATACTGGTTTATATTGAATTC
*
57561336 AAATACTTTCGTAACATCACTAATAAACATGGAAAAGT
326 AAACACTTTCGTAACATCACTAATAAACATGGAAAAGT
* *
57561374 ACATTAAGTCCAAAAGTACCAAAATGAGGGCATGATAGTGTAATGCAATCTCTGACAACTTCCAA
1 ACATTAAGTCCAAAAGTACCAAAATGAGAGCATGATAGTGTAATGCAATCTCCGACAACTTCCAA
* *
57561439 AACGAGTGAGCTTTCGAATCACTAATAAACACGGAAAAGTAAACAAAGTAAGCAATTAAGCTTAG
66 AACGAGTGACCTTTCGAATCACTAATAAACACGAAAAAGTAAACAAAGTAAGCAATTAAGCTTAG
57561504 TAAGTTCGTATAGCATAAAACTCATCTTACCATTTAATCACAATTTAAGTAATTAAACATAGTAT
131 TAAGTTCGTATAGCATAAAACTCATCTTACCATTTAATCACAATTTAAGTAATTAAACATAGTAT
* *
57561569 AAAGCAACTCAATTTGATTCACAAGCCTAACATATATTCATCCACAAAGTTAGACATGGAAATGA
196 AAAGCAACTCAATTTGATCCACAAGCCTAACATATATTCATCCACAAAGTTAGACATGGAAATCA
* * * *
57561634 CAAATCTCATAGATTCAATTCTCACATCATTTACGTACATACCTATACTGTTTTATATTTAATTC
261 CAAATCTCATAGATTCAATCCTCACATCATTTACATACATACCTATACTGGTTTATATTGAATTC
57561699 AAACACTTTCGTAACATCACTA
326 AAACACTTTCGTAACATCACTA
57561721 TGGCTATTGA
Statistics
Matches: 330, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
363 330 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.29
Consensus pattern (363 bp):
ACATTAAGTCCAAAAGTACCAAAATGAGAGCATGATAGTGTAATGCAATCTCCGACAACTTCCAA
AACGAGTGACCTTTCGAATCACTAATAAACACGAAAAAGTAAACAAAGTAAGCAATTAAGCTTAG
TAAGTTCGTATAGCATAAAACTCATCTTACCATTTAATCACAATTTAAGTAATTAAACATAGTAT
AAAGCAACTCAATTTGATCCACAAGCCTAACATATATTCATCCACAAAGTTAGACATGGAAATCA
CAAATCTCATAGATTCAATCCTCACATCATTTACATACATACCTATACTGGTTTATATTGAATTC
AAACACTTTCGTAACATCACTAATAAACATGGAAAAGT
Found at i:57568180 original size:26 final size:26
Alignment explanation
Indices: 57568151--57568227 Score: 65
Period size: 26 Copynumber: 3.1 Consensus size: 26
57568141 TGAGGTCACG
57568151 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
* * * *
57568177 TGTGTACTGGA-TAATTG--GTC-GC-A
1 TGTGTA--GTACTAAGTGCAGGCTACTA
57568200 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
57568226 TG
1 TG
57568228 CGTACCCAAA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
21 2 0.06
22 5 0.14
23 7 0.19
24 3 0.08
25 3 0.08
26 9 0.25
27 5 0.14
28 2 0.06
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGCAGGCTACTA
Found at i:57568223 original size:49 final size:49
Alignment explanation
Indices: 57568144--57568376 Score: 304
Period size: 49 Copynumber: 4.7 Consensus size: 49
57568134 ACTATTGTGA
* *
57568144 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
* * ** *
57568193 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-T-T
* * * *
57568244 GATCACATGTGTAGTACTAAGTACAGGCCACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
* * * *
57568293 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
*
57568342 GGTCACATGTGTGGTACTAAGTGCAGGCTACTATG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
57568377 CTACCAGATA
Statistics
Matches: 157, Mismatches: 25, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
49 116 0.74
50 2 0.01
51 39 0.25
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
Found at i:57568324 original size:100 final size:100
Alignment explanation
Indices: 57568146--57568325 Score: 315
Period size: 100 Copynumber: 1.8 Consensus size: 100
57568136 TATTGTGAGG
* * * * *
57568146 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTACAGGCCACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
57568211 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
57568246 TCACATGTGTAGTACTAAGTACAGGCCACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTACAGGCCACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
57568311 AAGTGCAGGCTACTA
66 AAGTGCAGGCTACTA
57568326 CGTGTACCAG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 75 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTACAGGCCACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCAAAAACTGTGA
Found at i:57580121 original size:24 final size:24
Alignment explanation
Indices: 57580083--57580132 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
57580073 GAGATATTAA
* *
57580083 CATAATTTTGAGATTTCTATGGAT
1 CATAATTTAGAGATTTCTAGGGAT
*
57580107 CATAATTTAGGGATTTCTAGGGAT
1 CATAATTTAGAGATTTCTAGGGAT
57580131 CA
1 CA
57580133 ATACACAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (24 bp):
CATAATTTAGAGATTTCTAGGGAT
Found at i:57583785 original size:46 final size:46
Alignment explanation
Indices: 57583722--57583889 Score: 148
Period size: 46 Copynumber: 3.6 Consensus size: 46
57583712 GCCCATAACC
* * *
57583722 GAACCCGGACTCCACTCAACGAGCTCGGGCATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
* * *
57583768 GAACTCGGACTCAACTCAACGAGCTCAGATGCCTAGTT-ACATCTCA-CA--
1 GAACTCGGACTCAACTCAACGAGCTC-G--GAC-A-TTCGCATC-CATAAGT
* * *
57583816 -AATTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
* *
57583861 GAACTCGAACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
57583890 TGCCCAAATA
Statistics
Matches: 97, Mismatches: 14, Indels: 22
0.73 0.11 0.17
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
44 2 0.02
46 50 0.52
47 23 0.24
49 2 0.02
50 6 0.06
51 4 0.04
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGT
Found at i:57587523 original size:68 final size:68
Alignment explanation
Indices: 57587375--57587532 Score: 162
Period size: 68 Copynumber: 2.3 Consensus size: 68
57587365 CTAGCCAATT
* * * *
57587375 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACTCATGTGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGTGACCTAGCTACA
*
57587440 TTTA
65 TATA
* *
57587444 TCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGTGACCTAGCTA
57587506 CTATATA
63 C-ATATA
57587513 GTATCTCGTAGC-CTTCTTGT
1 -TATCTCGTAGCTC-TCTTGT
57587533 ACACATGATG
Statistics
Matches: 75, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
67 1 0.01
68 34 0.45
69 8 0.11
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGTGACCTAGCTACAT
ATA
Found at i:57589747 original size:26 final size:27
Alignment explanation
Indices: 57589704--57589756 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
57589694 GACCCTCAGT
57589704 TGATAAAATGACTATTATGCCCCTATG
1 TGATAAAATGACTATTATGCCCCTATG
* * *
57589731 TGAT-AAATGAGTGTTATGCCCTTATG
1 TGATAAAATGACTATTATGCCCCTATG
57589757 AGATGTACAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (27 bp):
TGATAAAATGACTATTATGCCCCTATG
Found at i:57593534 original size:27 final size:27
Alignment explanation
Indices: 57593480--57593534 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
57593470 CAGTGACGGT
* **
57593480 AATATAATCGACACACAGCCTTGGATA
1 AATATAATCGACACACAGCCATCAATA
* *
57593507 AATATAATCGACACAGAGTCATCAATA
1 AATATAATCGACACACAGCCATCAATA
57593534 A
1 A
57593535 GTATGTTAGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (27 bp):
AATATAATCGACACACAGCCATCAATA
Found at i:57593875 original size:14 final size:14
Alignment explanation
Indices: 57593856--57593889 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
57593846 AAAAGCATAT
57593856 CAGTCATACAACCA
1 CAGTCATACAACCA
**
57593870 CAGTCATACATTCA
1 CAGTCATACAACCA
57593884 CAGTCA
1 CAGTCA
57593890 AATCAGTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.38, C:0.32, G:0.09, T:0.21
Consensus pattern (14 bp):
CAGTCATACAACCA
Found at i:57594075 original size:27 final size:27
Alignment explanation
Indices: 57593969--57594074 Score: 149
Period size: 27 Copynumber: 3.9 Consensus size: 27
57593959 ATGGTTATTT
*
57593969 TACCCTACAAGGGTATTTAGGTAATCC
1 TACCCTACAAGGGTATTTCGGTAATCC
* * *
57593996 TACCTTACAGGGGTATTTCGATAATCC
1 TACCCTACAAGGGTATTTCGGTAATCC
* * *
57594023 TACCCTACAGGGGTATTTCGTTAATTC
1 TACCCTACAAGGGTATTTCGGTAATCC
57594050 TACCCTACAAGGGTATTTCGGTAAT
1 TACCCTACAAGGGTATTTCGGTAAT
57594075 TTCAAAAGTT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGGTAATCC
Found at i:57594098 original size:26 final size:26
Alignment explanation
Indices: 57594060--57594114 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
57594050 TACCCTACAA
*
57594060 GGGTATTTCGGTAATTTCA-AAAGTTG
1 GGGTATTTAGGTAATTTCACAAA-TTG
57594086 GGGTATTTAGGTAATTTCACAAATTG
1 GGGTATTTAGGTAATTTCACAAATTG
57594112 GGG
1 GGG
57594115 GTCTTAACGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.36
Consensus pattern (26 bp):
GGGTATTTAGGTAATTTCACAAATTG
Found at i:57597903 original size:10 final size:10
Alignment explanation
Indices: 57597880--57597922 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
57597870 TATTCTTGTG
57597880 GGCCC-ATAT
1 GGCCCAATAT
* *
57597889 GGCCCAGTCT
1 GGCCCAATAT
57597899 GGCCCAATAT
1 GGCCCAATAT
*
57597909 GGCCCAAAAT
1 GGCCCAATAT
57597919 GGCC
1 GGCC
57597923 TCTGTCATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
9 5 0.18
10 23 0.82
ACGTcount: A:0.23, C:0.35, G:0.26, T:0.16
Consensus pattern (10 bp):
GGCCCAATAT
Found at i:57601832 original size:40 final size:40
Alignment explanation
Indices: 57601773--57601980 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
57601763 CAATTGAATG
* * * *
57601773 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* ** * * *
57601813 ATATCCGGGTTAAGACCCGAAGGCAAATGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
57601853 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
57601893 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
57601933 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
57601973 ATATCCGG
1 ATATCCGG
57601981 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:57601911 original size:80 final size:80
Alignment explanation
Indices: 57601774--57601980 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
57601764 AATTGAATGA
* * ** * * *
57601774 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
57601839 ATGTGCTAGT-G-AC
66 ATGTGCAAGTCGTAC
* * *
57601852 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
** *
57601917 ATTTGTGCAAGTCGTTC
64 AAATGTGCAAGTCGTAC
* *
57601934 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
57601981 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
80 104 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
ATGTGCAAGTCGTAC
Found at i:57604467 original size:40 final size:40
Alignment explanation
Indices: 57604405--57604607 Score: 266
Period size: 40 Copynumber: 5.1 Consensus size: 40
57604395 TGGATGATAA
* *
57604405 CCGGGCTAAGT-CCGAAGGCATTTGTACTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
57604444 CCGGGCCAAGTCTCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
57604484 CCGGGCTCATTCCCGAATGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
57604524 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
57604564 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
57604604 CCGG
1 CCGG
57604608 TTAAATCTCG
Statistics
Matches: 144, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 12 0.08
40 132 0.92
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:57611076 original size:40 final size:40
Alignment explanation
Indices: 57611002--57611179 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
57610992 GAGTCACGTA
** *
57611002 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
57611041 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
57611081 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
57611121 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
57611161 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
57611180 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:57619196 original size:40 final size:40
Alignment explanation
Indices: 57619122--57619299 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
57619112 GAGTCACGTA
** *
57619122 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
57619161 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
57619201 CCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
57619241 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
57619281 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
57619300 GTATCATTCA
Statistics
Matches: 119, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 102 0.86
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:57622735 original size:40 final size:40
Alignment explanation
Indices: 57622691--57622882 Score: 242
Period size: 40 Copynumber: 4.8 Consensus size: 40
57622681 ATAACCACAA
* *
57622691 GCACAATTGCCTTCGGGTCTTAACCCGGGTGTAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
* * *
57622731 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
57622771 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
* * * * *
57622811 GCACAAATGCCTTCAGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTAT-AGCAACTC
* * * *
57622851 GCATAAATGTCTTCGGGACTTAGCCCGGGTAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTAT
57622883 CATTCAAATG
Statistics
Matches: 133, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
40 131 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
Found at i:57622775 original size:80 final size:79
Alignment explanation
Indices: 57622671--57622882 Score: 309
Period size: 80 Copynumber: 2.7 Consensus size: 79
57622661 TTCTTCGAAT
* * *
57622671 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTGTAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
*
57622735 AAATGCCTTCGGGTC
65 AAATGCCTTCAGGTC
*
57622750 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
57622815 AAATGCCTTCAGGTC
65 AAATGCCTTCAGGTC
* * * *
57622830 TTAGCCCGGATATAATCACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
57622883 CATTCAAATG
Statistics
Matches: 120, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
79 5 0.04
80 114 0.95
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
AATGCCTTCAGGTC
Found at i:57629976 original size:40 final size:40
Alignment explanation
Indices: 57629931--57630122 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
57629921 ATAACAACAA
* *
57629931 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGGTATAGCAACTC
* *
57629971 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGGTATAGCAACTC
*
57630011 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGGTATAGCAACTC
* * *
57630051 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGGTAT-AGCAACTC
* *
57630091 GCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGGTAT
57630123 CATTCAAATG
Statistics
Matches: 137, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 135 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGGTATAGCAACTC
Found at i:57630016 original size:80 final size:80
Alignment explanation
Indices: 57629918--57630122 Score: 340
Period size: 80 Copynumber: 2.6 Consensus size: 80
57629908 AATTTAGCCA
* *
57629918 GATATAACAACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCT
1 GATATAACAACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCT
57629983 TCGGGTCTTAGCCCG
66 TCGGGTCTTAGCCCG
*
57629998 GATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCT
1 GATATAACAACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCT
57630063 TCGGGTCTTAGCCCG
66 TCGGGTCTTAGCCCG
* * *
57630078 GATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCGGGTAT
1 GATATAA-CAACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
57630123 CATTCAAATG
Statistics
Matches: 117, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
80 116 0.99
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
GATATAACAACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCT
TCGGGTCTTAGCCCG
Done.