Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 193 of 425
Found at i:58734440 original size:50 final size:50
Alignment explanation
Indices: 58734083--58734441 Score: 271
Period size: 50 Copynumber: 7.2 Consensus size: 50
58734073 TTGTGAGTCA
* *
58734083 CATGTGTAGTACTAAGTGCAGGCTACTACGTGCT-CCAAATTGATAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTG-TACCAGATTGATAGGTCG
* * * * *
58734133 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGATCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA--TAGGTCG
** * * * * * * * *
58734184 TGTGTGTAGTACTAAGTGTAGGCTAGTACGTGTATCAGATGGTTAAGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCG
** * *
58734234 TGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATTGATCGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCG
* * * * * * *
58734284 CATGGGTAGT--TGAAGTGCAGGCTACTATGCGTACCCG-TTAACTTTGATCA
1 CATGTGTAGTACT-AAGTGCAGGCTACTATGTGTACCAGATTGA--TAGGTCG
* * ** * * * *
58734334 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAAGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCG
* *
58734384 CGTGTGTAGTACTATA-TGTAGGCTACTATGTGTACCAGATTGATAGGTCG
1 CATGTGTAGTACTA-AGTGCAGGCTACTATGTGTACCAGATTGATAGGTCG
58734434 CATGTGTA
1 CATGTGTA
58734442 ACACCCCTAT
Statistics
Matches: 234, Mismatches: 64, Indels: 22
0.73 0.20 0.07
Matches are distributed among these distances:
48 4 0.02
49 26 0.11
50 145 0.62
51 56 0.24
52 3 0.01
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCG
Found at i:58741747 original size:25 final size:23
Alignment explanation
Indices: 58741701--58741747 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
58741691 ATATGTATTA
* *
58741701 TTTAATTATAATGGATTTATAAT
1 TTTAATTATAATGAATTAATAAT
58741724 TTTAATTTACTAATGAATTAATAA
1 TTTAA-TTA-TAATGAATTAATAA
58741748 AAAAAAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 3 0.15
25 12 0.60
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (23 bp):
TTTAATTATAATGAATTAATAAT
Found at i:58742317 original size:39 final size:39
Alignment explanation
Indices: 58742263--58742388 Score: 182
Period size: 39 Copynumber: 3.2 Consensus size: 39
58742253 TTCAGTGATG
*
58742263 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAAT
58742302 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAAT
* * * *
58742341 TATATCCGGACTTAAGGTCTC-CAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTC-CGCAGGCTATGTGCTAGAAT
*
58742380 TATGTCCGG
1 TATATCCGG
58742389 GCTAAAGTTC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 79 0.99
40 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAAT
Found at i:58742405 original size:78 final size:78
Alignment explanation
Indices: 58742263--58742406 Score: 173
Period size: 78 Copynumber: 1.8 Consensus size: 78
58742253 TTCAGTGATG
* * * * * *
58742263 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTAGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCAGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATATCCGGACTAAAGGTCCACAGGC
58742328 TATGTGCTAGAAT
66 TATGTGCTAGAAT
* * * * *
58742341 TATATCCGGACTTAAGGTCTC-CAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGTTCCACAGG
1 TATATCCAGACTTAAGGTC-CGCAGGCTACGTGCTAGAAATATATCCGGACTAAAGGTCCACAGG
58742405 CT
65 CT
58742407 TCGAGCTAGT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
78 53 0.98
79 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (78 bp):
TATATCCAGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATATCCGGACTAAAGGTCCACAGGC
TATGTGCTAGAAT
Found at i:58742415 original size:78 final size:78
Alignment explanation
Indices: 58742263--58742426 Score: 172
Period size: 78 Copynumber: 2.1 Consensus size: 78
58742253 TTCAGTGATG
* * * * * * *
58742263 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTAGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATATCCGGACTAAAGGTCCACAGGC
*
58742328 TATGTGCTAGAAT
66 TATGAGCTAGAAT
* * * *
58742341 TATATCCGGACTTAAGGTCTC-CAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGTTCCACAGG
1 TATATCCGGACTTAAGGTC-CGCAGGCTACGTGCTAGAAATATATCCGGACTAAAGGTCCACAGG
*
58742405 CT-TCGAGCTAGTAT
65 CTAT-GAGCTAGAAT
58742419 TATA-CCGG
1 TATATCCGG
58742427 GTTTAAATTC
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
77 5 0.07
78 65 0.92
79 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAATATATCCGGACTAAAGGTCCACAGGC
TATGAGCTAGAAT
Found at i:58745029 original size:39 final size:39
Alignment explanation
Indices: 58744975--58745127 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
58744965 GAATGTTCGA
*
58744975 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
58745014 GTGATATCCGGGCTAAGCCTGAAGGCAATTGTGCGAGCT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
58745053 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
58745092 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
58745128 GGTTACCATA
Statistics
Matches: 104, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 87 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:58745143 original size:40 final size:40
Alignment explanation
Indices: 58744982--58745157 Score: 169
Period size: 39 Copynumber: 4.5 Consensus size: 40
58744972 CGAGTGATAT
* *** *
58744982 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAATTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * ** *
58745021 CCGGGCTAAG-CCTGAAGGCAATTGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*** *
58745060 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
* * *
58745099 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
*
58745139 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
58745158 TGTTTTGAAC
Statistics
Matches: 120, Mismatches: 16, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 80 0.67
40 40 0.33
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACCATAA
Found at i:58752241 original size:39 final size:39
Alignment explanation
Indices: 58752187--58752312 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
58752177 TTCAGTGATG
*
58752187 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
58752226 TATATCCGGACTTAGGGTCCGAAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
58752265 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
58752304 TATGTCCGG
1 TATATCCGG
58752313 GCTAAAGTCC
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:58752326 original size:39 final size:39
Alignment explanation
Indices: 58752187--58752350 Score: 188
Period size: 39 Copynumber: 4.2 Consensus size: 39
58752177 TTCAGTGATG
* * *
58752187 TATATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * *
58752226 TATATCCGGACTTAGGGTCCGAAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
*
58752265 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * * * * *
58752304 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGGTAT
1 TATATCCGGACTTAAGGT-CCGCAGGCTACGTGCTGGAAT
58752343 TATA-CCGG
1 TATATCCGG
58752351 GTTTAAATTC
Statistics
Matches: 110, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
38 9 0.08
39 101 0.92
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
Found at i:58754733 original size:43 final size:43
Alignment explanation
Indices: 58754683--58754817 Score: 118
Period size: 43 Copynumber: 3.2 Consensus size: 43
58754673 TCCCGAACGT
*
58754683 GGTCTTATACGTAATTCAATATCGATGCCTCTGTCCCAGACAA
1 GGTCTTATACGTAATTCAATATCGATGCCTATGTCCCAGACAA
* * *
58754726 GGTCTTATACGGAA-TCAGATA-CGATG-CTGATGTCCCAAACAT
1 GGTCTTATACGTAATTCA-ATATCGATGCCT-ATGTCCCAGACAA
* * * * *
58754768 GGTCTTATATGTAAATCTC-A-ATCGAGGCCTGTGTCCTAGACAC
1 GGTCTTATACGT-AAT-TCAATATCGATGCCTATGTCCCAGACAA
58754811 GGTCTTA
1 GGTCTTA
58754818 CACGATGTCT
Statistics
Matches: 74, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
41 2 0.03
42 29 0.39
43 39 0.53
44 2 0.03
45 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
GGTCTTATACGTAATTCAATATCGATGCCTATGTCCCAGACAA
Found at i:58754762 original size:42 final size:43
Alignment explanation
Indices: 58754683--58754776 Score: 113
Period size: 42 Copynumber: 2.2 Consensus size: 43
58754673 TCCCGAACGT
* * *
58754683 GGTCTTATACGTAATTCAATATCGATGCCTCTGTCCCAGACAA
1 GGTCTTATACGGAATTCAATATCGATGCCTATGTCCCAAACAA
*
58754726 GGTCTTATACGGAA-TCAGATA-CGATG-CTGATGTCCCAAACAT
1 GGTCTTATACGGAATTCA-ATATCGATGCCT-ATGTCCCAAACAA
58754768 GGTCTTATA
1 GGTCTTATA
58754777 TGTAAATCTC
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
41 2 0.04
42 27 0.60
43 16 0.36
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (43 bp):
GGTCTTATACGGAATTCAATATCGATGCCTATGTCCCAAACAA
Found at i:58755614 original size:345 final size:345
Alignment explanation
Indices: 58754983--58755678 Score: 1383
Period size: 345 Copynumber: 2.0 Consensus size: 345
58754973 CACTTAATTG
58754983 TAATTTGACTTACCTCGTATAGATTTCGGACAGAACAAGTCGACTATTCAACTATTTTCGACTTC
1 TAATTTGACTTACCTCGTATAGATTTCGGACAGAACAAGTCGACTATTCAACTATTTTCGACTTC
58755048 CAGCGATCTAAGTCCGATTTTCTTTGTTCTTGATCTAATACAATACAATTTCAATCATTCAATCA
66 CAGCGATCTAAGTCCGATTTTCTTTGTTCTTGATCTAATACAATACAATTTCAATCATTCAATCA
58755113 TTCATTTCATTCAAAATAATCCATGAACACATATTTAGGGCACTTTACATTTTAGCCCTTATATT
131 TTCATTTCATTCAAAATAATCCATGAACACATATTTAGGGCACTTTACATTTTAGCCCTTATATT
58755178 ATCACACTTTGACAATTTAGTCCATTTTTCACAAAATCACAAATATGCATAATTCATCAATACTA
196 ATCACACTTTGACAATTTAGTCCATTTTTCACAAAATCACAAATATGCATAATTCATCAATACTA
58755243 TAGCTTGGCCAAATATACATGGCTTCCATACAAACCCAATTAACATATTTAATTCACAATTTAGT
261 TAGCTTGGCCAAATATACATGGCTTCCATACAAACCCAATTAACATATTTAATTCACAATTTAGT
58755308 CCTTCAAAACCTTATTTTCA
326 CCTTCAAAACCTTATTTTCA
58755328 TAATTTGACTTACCTCGTATAGATTTCGGACAGAACAAGTCGACTATTCAACTATTTTCGACTTC
1 TAATTTGACTTACCTCGTATAGATTTCGGACAGAACAAGTCGACTATTCAACTATTTTCGACTTC
58755393 CAGCGATCTAAGTCCGATTTTCTTTGTTCTTGATCTAATACAATACAATTTCAATCATTCAATCA
66 CAGCGATCTAAGTCCGATTTTCTTTGTTCTTGATCTAATACAATACAATTTCAATCATTCAATCA
*
58755458 TTCATTTCATTCAAAATAATCCATGAACACATATTTAGGGCATTTTACATTTTAGCCCTTATATT
131 TTCATTTCATTCAAAATAATCCATGAACACATATTTAGGGCACTTTACATTTTAGCCCTTATATT
58755523 ATCACACTTTGACAATTTAGTCCATTTTTCACAAAATCACAAATATGCATAATTCATCAATACTA
196 ATCACACTTTGACAATTTAGTCCATTTTTCACAAAATCACAAATATGCATAATTCATCAATACTA
58755588 TAGCTTGGCCAAATATACATGGCTTCCATACAAACCCAATTAACATATTTAATTCACAATTTAGT
261 TAGCTTGGCCAAATATACATGGCTTCCATACAAACCCAATTAACATATTTAATTCACAATTTAGT
58755653 CCTTCAAAACCTTATTTTCA
326 CCTTCAAAACCTTATTTTCA
58755673 TAATTT
1 TAATTT
58755679 AGCTCAAAAA
Statistics
Matches: 350, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
345 350 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (345 bp):
TAATTTGACTTACCTCGTATAGATTTCGGACAGAACAAGTCGACTATTCAACTATTTTCGACTTC
CAGCGATCTAAGTCCGATTTTCTTTGTTCTTGATCTAATACAATACAATTTCAATCATTCAATCA
TTCATTTCATTCAAAATAATCCATGAACACATATTTAGGGCACTTTACATTTTAGCCCTTATATT
ATCACACTTTGACAATTTAGTCCATTTTTCACAAAATCACAAATATGCATAATTCATCAATACTA
TAGCTTGGCCAAATATACATGGCTTCCATACAAACCCAATTAACATATTTAATTCACAATTTAGT
CCTTCAAAACCTTATTTTCA
Found at i:58756256 original size:22 final size:22
Alignment explanation
Indices: 58756226--58756277 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
58756216 CATAATTAAG
* *
58756226 CACAAAAACCGACAAATTAAAT
1 CACAGAAACAGACAAATTAAAT
* *
58756248 CACAGAAACAGGCAAATTAAGT
1 CACAGAAACAGACAAATTAAAT
58756270 CACAGAAA
1 CACAGAAA
58756278 TTTTGCAGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.56, C:0.21, G:0.12, T:0.12
Consensus pattern (22 bp):
CACAGAAACAGACAAATTAAAT
Found at i:58756657 original size:16 final size:16
Alignment explanation
Indices: 58756636--58756667 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
58756626 AGAGTGGCGT
58756636 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
58756652 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
58756668 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:58775225 original size:40 final size:40
Alignment explanation
Indices: 58775033--58775218 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
58775023 TCGAATGATG
* * *
58775033 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
58775073 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
58775113 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
58775153 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
58775194 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
58775219 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 120 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:58775225 original size:80 final size:80
Alignment explanation
Indices: 58775033--58775251 Score: 238
Period size: 80 Copynumber: 2.8 Consensus size: 80
58775023 TCGAATGATG
* * **
58775033 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAGATCCGAAGGCATT
58775097 CGTGCGAGTTACTAAA
65 CGTGCGAGTTACTAAA
* *
58775113 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGAT-CCGAAGGCAT
58775175 TCTGTGCGAGTTACTATAA
64 TC-GTGCGAGTTACTA-AA
* **
58775194 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA-ACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTTAAGA-TCCGAAGG
58775252 TACGTGATTC
Statistics
Matches: 119, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
79 19 0.16
80 90 0.76
81 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGATCCGAAGGCATTC
GTGCGAGTTACTAAA
Found at i:58776909 original size:26 final size:26
Alignment explanation
Indices: 58776873--58776925 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
58776863 TTCCAATGTG
58776873 AACTCGAGATACATCAGCTCGGGGAT
1 AACTCGAGATACATCAGCTCGGGGAT
58776899 AACTCGAGATACATCAGCTCGGGGAT
1 AACTCGAGATACATCAGCTCGGGGAT
58776925 A
1 A
58776926 TCAAAGAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (26 bp):
AACTCGAGATACATCAGCTCGGGGAT
Found at i:58779006 original size:55 final size:55
Alignment explanation
Indices: 58778919--58779033 Score: 185
Period size: 55 Copynumber: 2.1 Consensus size: 55
58778909 TGTTGGCATT
*
58778919 TATCAGTCCACTCAAACTTTACATCTTCCTATAGCAAACGAGTCATCGGAGAAGC
1 TATCAGTCCACTCAAACTTTACATCTTCCTATAGCAAACGAGTCATCAGAGAAGC
* * * *
58778974 TATCAGTCCAGTTAAACTTTGCATCTTTCTATAGCAAACGAGTCATCAGAGAAGC
1 TATCAGTCCACTCAAACTTTACATCTTCCTATAGCAAACGAGTCATCAGAGAAGC
58779029 TATCA
1 TATCA
58779034 TTGAAAAACT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (55 bp):
TATCAGTCCACTCAAACTTTACATCTTCCTATAGCAAACGAGTCATCAGAGAAGC
Found at i:58781665 original size:13 final size:13
Alignment explanation
Indices: 58781647--58781673 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
58781637 CTGGGATGTT
58781647 GGCATCAATTTGA
1 GGCATCAATTTGA
58781660 GGCATCAATTTGA
1 GGCATCAATTTGA
58781673 G
1 G
58781674 ATTTACGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (13 bp):
GGCATCAATTTGA
Found at i:58781727 original size:42 final size:42
Alignment explanation
Indices: 58781660--58781793 Score: 130
Period size: 43 Copynumber: 3.1 Consensus size: 42
58781650 ATCAATTTGA
58781660 GGCATCA-ATTTGAGATTTACGTGTAAGACCATGTCTGGGACA-T
1 GGCATCATATTT--GATTT-CGTGTAAGACCATGTCTGGGACAGT
* *
58781703 CGGCATCATATTTGATTTCGTGTAAGACCTTGTCTAGGACAGT
1 -GGCATCATATTTGATTTCGTGTAAGACCATGTCTGGGACAGT
* * * * *
58781746 AGCATTGATATTTGATTACATGTAAGACCACGTCTGGGAC-GTT
1 GGCA-TCATATTTGATTTCGTGTAAGACCATGTCTGGGACAG-T
58781789 GGCAT
1 GGCAT
58781794 TGTGCGAGCT
Statistics
Matches: 76, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
42 26 0.34
43 39 0.51
44 7 0.09
45 4 0.05
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
GGCATCATATTTGATTTCGTGTAAGACCATGTCTGGGACAGT
Found at i:58781794 original size:43 final size:43
Alignment explanation
Indices: 58781676--58781795 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 43
58781666 AATTTGAGAT
* * *
58781676 TTACGTGTAAGACCATGTCTGGGACATCGGCA-TCATATTTGA
1 TTACGTGTAAGACCATGTCTGGGACGTTGGCATTGATATTTGA
* * * *
58781718 TTTCGTGTAAGACCTTGTCTAGGACAG-TAGCATTGATATTTGA
1 TTACGTGTAAGACCATGTCTGGGAC-GTTGGCATTGATATTTGA
* *
58781761 TTACATGTAAGACCACGTCTGGGACGTTGGCATTG
1 TTACGTGTAAGACCATGTCTGGGACGTTGGCATTG
58781796 TGCGAGCTTT
Statistics
Matches: 62, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
42 26 0.42
43 36 0.58
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACGTTGGCATTGATATTTGA
Found at i:58783749 original size:64 final size:64
Alignment explanation
Indices: 58783648--58783775 Score: 184
Period size: 64 Copynumber: 2.0 Consensus size: 64
58783638 TGTTTCACTT
* ** * * *
58783648 CTGGGGGATACCGTGTATCAATGGTGGAAAACTTTGATATTAGTGGTTCCGAGAGAACGAATCA
1 CTGGGGAATACCACGTATCAATGGTGGAAAACTTTGATATCAGTGGTTCCAAGAGAAAGAATCA
* *
58783712 CTGGGGAATACCACGTATCAGTGGTGGAAAACTTTGATATCGGTGGTTCCAAGAGAAAGAATCA
1 CTGGGGAATACCACGTATCAATGGTGGAAAACTTTGATATCAGTGGTTCCAAGAGAAAGAATCA
58783776 ATTTCTTCCA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (64 bp):
CTGGGGAATACCACGTATCAATGGTGGAAAACTTTGATATCAGTGGTTCCAAGAGAAAGAATCA
Found at i:58790587 original size:40 final size:40
Alignment explanation
Indices: 58790518--58790763 Score: 377
Period size: 40 Copynumber: 6.2 Consensus size: 40
58790508 AACCCAAGTA
* **
58790518 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
58790557 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58790597 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58790637 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
58790677 CCTTTGGGACTTAACCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
58790717 CCTTCGGGACTTAACCCAGATATCGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58790757 CCTTCGG
1 CCTTCGG
58790764 ATCTTAGTCC
Statistics
Matches: 194, Mismatches: 12, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
39 13 0.07
40 181 0.93
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:58804139 original size:22 final size:23
Alignment explanation
Indices: 58804110--58804157 Score: 55
Period size: 25 Copynumber: 2.1 Consensus size: 23
58804100 ATTAAAGGTT
58804110 ATTAAAGTCAT-T-TAATAAAAC
1 ATTAAAGTCATATATAATAAAAC
*
58804131 ATTATAAGTTATAATATAATAAAAC
1 ATTA-AAGTCAT-ATATAATAAAAC
58804156 AT
1 AT
58804158 AAAAAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 4 0.18
22 6 0.27
24 1 0.05
25 11 0.50
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.35
Consensus pattern (23 bp):
ATTAAAGTCATATATAATAAAAC
Found at i:58808058 original size:93 final size:93
Alignment explanation
Indices: 58807895--58808065 Score: 245
Period size: 93 Copynumber: 1.8 Consensus size: 93
58807885 GCGCCTAAGT
** **
58807895 GAACTCAGACTCAACTCAACGAGCTCAGGTGTTCGCATCTGTAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
58807960 CGAGTTCGGATGCCTAGTTACATTACAC
66 CGAGTTCGGATGCCTAGTTACATTACAC
* * * *
58807988 GAACTCGGACTCAACTCAATGAGCTC-GGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
58808052 ATGAGTTCGGATGC
65 ACGAGTTCGGATGC
58808066 TCAACCATCC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 2 0.03
93 66 0.97
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTACAC
Found at i:58816854 original size:39 final size:40
Alignment explanation
Indices: 58816638--58816856 Score: 311
Period size: 40 Copynumber: 5.5 Consensus size: 40
58816628 CATTTGAATG
58816638 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
58816678 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * *
58816718 ATATCCAGGATAAGACCCGAAGGCATTTGCGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
58816758 ATATCCGGGC-AAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
58816797 ATGTCC-GGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
58816836 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
58816857 AAACTTGGGT
Statistics
Matches: 161, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
38 3 0.02
39 73 0.45
40 85 0.53
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:58824721 original size:40 final size:40
Alignment explanation
Indices: 58824661--58824841 Score: 267
Period size: 40 Copynumber: 4.5 Consensus size: 40
58824651 CATTTGAATG
58824661 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
58824701 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
58824741 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
58824781 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
58824821 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
58824842 AAACTTGGAT
Statistics
Matches: 128, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 115 0.90
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:58826347 original size:93 final size:93
Alignment explanation
Indices: 58826241--58826411 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
58826231 GCCCCTAAGT
* ** * * *
58826241 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAATGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTTGAACTCAACTCAA
58826306 CGAGTTCGGATGCCTAGTTACATCACAC
66 CGAGTTCGGATGCCTAGTTACATCACAC
* * *
58826334 GAACTCAGACTCAACTCAGCAAGCTCGGACATTTGCATCCATAAGTGAACTTGAACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTTGAACTCAACTCAA
58826399 CGAGTTCGGATGC
66 CGAGTTCGGATGC
58826412 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTTGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCACAC
Found at i:58826408 original size:46 final size:46
Alignment explanation
Indices: 58826236--58826408 Score: 120
Period size: 46 Copynumber: 3.7 Consensus size: 46
58826226 AACCCGCCCC
* * * * * *
58826236 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTTGAACTCAACTCAACGAGCTCGGACATTTGCATCCA
* * * * *
58826282 TAAATGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-CA
1 TAAGTGAACTTGAACTCAACTCAACGAGCTCGGA---C-ATTTGCATCCA
* * * * *
58826331 -CA-CGAAC-TCAGACTCAACTCAGCAAGCTCGGACATTTGCATCCA
1 TAAGTGAACTTGA-ACTCAACTCAACGAGCTCGGACATTTGCATCCA
*
58826375 TAAGTGAACTTGAACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTTGAACTCAACTCAACGAGCTCGGA
58826409 TGCTCAACCA
Statistics
Matches: 94, Mismatches: 24, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 1 0.01
46 52 0.55
47 24 0.26
48 1 0.01
49 3 0.03
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTTGAACTCAACTCAACGAGCTCGGACATTTGCATCCA
Found at i:58832291 original size:42 final size:42
Alignment explanation
Indices: 58832227--58832388 Score: 159
Period size: 42 Copynumber: 3.8 Consensus size: 42
58832217 AGGGTTACTA
*
58832227 AGATTACGTGTAAGACCGTATCTGGGATATGGCATCTATATG
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCTATATG
* * * * * *
58832269 AGATTTCGTTTAAGACCATATCTAGGATATGCCATCGATGTG
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCTATATG
* * *
58832311 AGACTT-CGTGTAAAACCATAGCTGGGCTATTGGCAT-TGATACT-
1 AGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCT-ATA-TG
* *
58832354 AGATTACATGTAAGACCATATATGGGATATGGCAT
1 AGATTACGTGTAAGACCATATCTGGGATATGGCAT
58832389 TGGTATAGTA
Statistics
Matches: 95, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
42 64 0.67
43 30 0.32
44 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTGGGATATGGCATCTATATG
Found at i:58838797 original size:42 final size:42
Alignment explanation
Indices: 58838732--58838895 Score: 172
Period size: 42 Copynumber: 3.9 Consensus size: 42
58838722 TTAGGGTTAC
* **
58838732 TGAGATTACATGTAAAACCATATCTGGGATATGGCATTTATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
* * *
58838774 TGAGATTTCGTGTAAGACGATATCTGGGATATGGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
* * *
58838816 TGGGACTT-CGTGTAAGACCATAACTAGGCGAT-TGGCATCGATA
1 TGAGA-TTACATGTAAGACCATATCT-GG-GATATGGCATCGATA
* *
58838859 CGAGATCACATGTAA-AGCCATATCTGGGATATGGCAT
1 TGAGATTACATGTAAGA-CCATATCTGGGATATGGCAT
58838896 TGGTATAGTA
Statistics
Matches: 102, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
41 3 0.03
42 65 0.64
43 31 0.30
44 3 0.03
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:58844244 original size:20 final size:20
Alignment explanation
Indices: 58844215--58844260 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
58844205 AGCACATGTA
* * *
58844215 TTCATAAAATTTTAGAATTT
1 TTCATTAAATTTTACAACTT
58844235 TTCATTAAATTTTACAACTT
1 TTCATTAAATTTTACAACTT
58844255 TTCATT
1 TTCATT
58844261 TTAGTCCCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.52
Consensus pattern (20 bp):
TTCATTAAATTTTACAACTT
Found at i:58848932 original size:20 final size:20
Alignment explanation
Indices: 58848895--58848934 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
58848885 GGGTGATCAA
* *
58848895 AAGTGCCCAAGACCCAAAAT
1 AAGTCCCCAAGAACCAAAAT
*
58848915 AAGTCCCCAAGAATCAAAAT
1 AAGTCCCCAAGAACCAAAAT
58848935 GGCTTGAAGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.28, G:0.12, T:0.12
Consensus pattern (20 bp):
AAGTCCCCAAGAACCAAAAT
Found at i:58851421 original size:24 final size:24
Alignment explanation
Indices: 58851394--58851508 Score: 212
Period size: 24 Copynumber: 4.8 Consensus size: 24
58851384 GCTGGAAATA
58851394 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
58851418 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
58851442 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
58851466 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
58851490 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
58851509 ACATAATAAG
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 89 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:58851522 original size:72 final size:72
Alignment explanation
Indices: 58851394--58851530 Score: 204
Period size: 72 Copynumber: 1.9 Consensus size: 72
58851384 GCTGGAAATA
* ** * *
58851394 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
58851459 GATTTAC
66 GATTTAC
*
58851466 TATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATAATA-AGCACTATGTGTG
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATAATATAGCACTATGTGTG
58851530 C
65 C
58851531 CACATTCGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
72 53 0.91
73 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (72 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
GATTTAC
Found at i:58859302 original size:24 final size:24
Alignment explanation
Indices: 58859275--58859389 Score: 212
Period size: 24 Copynumber: 4.8 Consensus size: 24
58859265 GCTGGAAATA
58859275 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
58859299 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
58859323 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
**
58859347 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTAC
58859371 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
58859390 ACATAATAAG
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 89 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.36
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:58859403 original size:72 final size:72
Alignment explanation
Indices: 58859275--58859411 Score: 204
Period size: 72 Copynumber: 1.9 Consensus size: 72
58859265 GCTGGAAATA
* ** * *
58859275 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
58859340 GATTTAC
66 GATTTAC
*
58859347 TATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGAACATAATA-AGCACTATGTGTG
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCG-ACATAATATAGCACTATGTGTG
58859411 C
65 C
58859412 CACATTCGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
72 53 0.91
73 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (72 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACATAATATAGCACTATGTGTGC
GATTTAC
Found at i:58862587 original size:18 final size:18
Alignment explanation
Indices: 58862564--58862611 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
58862554 GTTTTGACTC
58862564 GGTTTTTGATGATTTCTA
1 GGTTTTTGATGATTTCTA
*
58862582 GGTTTTTGAAGATTTCTA
1 GGTTTTTGATGATTTCTA
*
58862600 CGTTTTTG-TGAT
1 GGTTTTTGATGAT
58862612 CGTTGCTTCG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 3 0.11
18 24 0.89
ACGTcount: A:0.17, C:0.06, G:0.23, T:0.54
Consensus pattern (18 bp):
GGTTTTTGATGATTTCTA
Found at i:58869610 original size:40 final size:40
Alignment explanation
Indices: 58869525--58869675 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
58869515 AATTGAATGA
* * *
58869525 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
58869565 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
58869606 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
58869645 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
58869676 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:58869689 original size:40 final size:40
Alignment explanation
Indices: 58869562--58869691 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
58869552 ATGCTGGAAA
* * * *
58869562 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
58869602 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
58869642 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
58869682 TTATATCCGG
1 TTATATCCGG
58869692 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:58877584 original size:38 final size:38
Alignment explanation
Indices: 58877494--58877639 Score: 154
Period size: 38 Copynumber: 3.8 Consensus size: 38
58877484 AATTGAATGA
* * * **
58877494 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATGC
* *
58877533 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-GC
*
58877571 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATGC
*
58877609 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
58877640 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
37 4 0.04
38 57 0.63
39 15 0.16
40 15 0.16
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATGC
Found at i:58877622 original size:76 final size:76
Alignment explanation
Indices: 58877494--58877639 Score: 197
Period size: 76 Copynumber: 1.9 Consensus size: 76
58877484 AATTGAATGA
*
58877494 TATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAAT
1 TATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
58877559 TGTGCTAGTGGC
65 TGTGCTAGTGGC
* * * * *
58877571 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
58877634 TTGTGC
64 TTGTGC
58877640 ACGTGATTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
76 34 0.56
77 16 0.26
78 11 0.18
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (76 bp):
TATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGC
Found at i:58889835 original size:28 final size:28
Alignment explanation
Indices: 58889770--58889870 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
58889760 ATAGTGAATC
*
58889770 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
58889799 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
58889827 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
58889857 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58889871 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:58892587 original size:40 final size:40
Alignment explanation
Indices: 58892555--58892865 Score: 507
Period size: 40 Copynumber: 7.8 Consensus size: 40
58892545 CCAGCATGAT
** * * *
58892555 TGCTCTTCGGGAGCTAGCCCGGTTATAACACCAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
58892595 TGCTCTTCGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
58892634 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
* * * *
58892674 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACAAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
58892714 TGCTCTTCGGAATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
58892754 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
*
58892794 TGCTCTTCGGGATTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
58892834 TGCTCTTCGGGATTTAGCCCGGATATATCACT
1 TGCTCTTCGGGATTTAGCCCGGATATATCACT
58892866 CTCAATTCTC
Statistics
Matches: 253, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.13
40 220 0.87
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
Found at i:58894599 original size:37 final size:37
Alignment explanation
Indices: 58894549--58894676 Score: 229
Period size: 37 Copynumber: 3.4 Consensus size: 37
58894539 TTATTACGAA
58894549 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
58894586 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
58894623 GTCTTCCCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
58894660 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
58894677 TTCCCAAGTT
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
37 82 0.94
38 5 0.06
ACGTcount: A:0.24, C:0.34, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:58894774 original size:48 final size:48
Alignment explanation
Indices: 58894716--58894963 Score: 433
Period size: 48 Copynumber: 5.2 Consensus size: 48
58894706 TGTTACAACA
58894716 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
58894764 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
58894812 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
** * *
58894860 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATGT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
58894908 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
58894956 TTCACATT
1 TTCACATT
58894964 CATCACATCG
Statistics
Matches: 186, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 186 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:58895011 original size:49 final size:49
Alignment explanation
Indices: 58894955--58895094 Score: 280
Period size: 49 Copynumber: 2.9 Consensus size: 49
58894945 CACACATATA
58894955 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
58895004 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
58895053 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
58895095 CTATTATGTA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 91 1.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
Found at i:58900953 original size:50 final size:49
Alignment explanation
Indices: 58900895--58901284 Score: 427
Period size: 50 Copynumber: 8.0 Consensus size: 49
58900885 TGATGCTAGG
*
58900895 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
*
58900944 CGAGATATGAGAGCTAGTGTAAGACCATGTCTGGTACATGGCATCGGCCT
1 -GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * *
58900994 CGAAATATGAGAGCTAGTGTAAGACCATGTTTGGGATATGGCAAT-GGCCTT
1 -GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC-ATCGGCC-T
* *
58901045 GAGATATGAGAGCTAGTGTAAAACCATGTCTAGGACATGGCATCGG-CT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * * *
58901093 -TGATATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGTATTGGCACT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CT
* * * *
58901140 GATAGATGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCCT
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
* * * *
58901189 CGATATACGAGAG-TCAGTGTAAGACCATGTCTGGGACATGGCAT-TGACT
1 -GAGATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
** * * *
58901238 TTGATGTGTGAGCTAGTGTAAGACCATGT-TCGGGACATGGCGTCGGC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCT-GGGACATGGCATCGGC
58901285 ATTTTACCCT
Statistics
Matches: 286, Mismatches: 41, Indels: 27
0.81 0.12 0.08
Matches are distributed among these distances:
45 28 0.10
46 1 0.00
47 10 0.03
48 38 0.13
49 11 0.04
50 195 0.68
51 3 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (49 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
Found at i:58906375 original size:39 final size:39
Alignment explanation
Indices: 58906321--58906436 Score: 214
Period size: 39 Copynumber: 3.0 Consensus size: 39
58906311 TTCAGTGATG
58906321 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
58906360 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
58906399 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
58906437 ATATGTCCTG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:58906460 original size:39 final size:39
Alignment explanation
Indices: 58906321--58906484 Score: 199
Period size: 39 Copynumber: 4.2 Consensus size: 39
58906311 TTCAGTGATG
* *
58906321 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* *
58906360 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
*
58906399 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * * * *
58906438 TATGTCCTGG-C-TAAAGTCCCGCAGGCTTCGAGCTGGTAT
1 TATATCC-GGACTTAAGGT-CCGCAGGCTACGTGCTGGAAT
58906477 TATA-CCGG
1 TATATCCGG
58906485 GTTTAAATTC
Statistics
Matches: 113, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
37 2 0.02
38 7 0.06
39 102 0.90
40 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
Found at i:58908050 original size:14 final size:14
Alignment explanation
Indices: 58908031--58908062 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
58908021 TTAAATTAAA
58908031 ATAATATAAAATTT
1 ATAATATAAAATTT
*
58908045 ATAATATAACATTT
1 ATAATATAAAATTT
58908059 ATAA
1 ATAA
58908063 AAATAGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAATATAAAATTT
Found at i:58913173 original size:26 final size:26
Alignment explanation
Indices: 58913143--58913194 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
58913133 TCATCTACTT
58913143 CACATTTTAACTAAGTGTAACATCTC
1 CACATTTTAACTAAGTGTAACATCTC
58913169 CACATTTTAACTAAGTGTAACATCTC
1 CACATTTTAACTAAGTGTAACATCTC
58913195 AATTTTTAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.35
Consensus pattern (26 bp):
CACATTTTAACTAAGTGTAACATCTC
Found at i:58916159 original size:22 final size:21
Alignment explanation
Indices: 58916118--58916175 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 21
58916108 ATTTTAATCG
**
58916118 AGATTTTATT-TACTTATTTA
1 AGATTTTATTATTTTTATTTA
* *
58916138 TGTTTTTATTCATTTTTATTTA
1 AGATTTTATT-ATTTTTATTTA
58916160 AGATTTTATTATTTTT
1 AGATTTTATTATTTTT
58916176 TTAAATTATC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 8 0.27
21 6 0.20
22 16 0.53
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.67
Consensus pattern (21 bp):
AGATTTTATTATTTTTATTTA
Found at i:58916176 original size:22 final size:22
Alignment explanation
Indices: 58916131--58916175 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
58916121 TTTTATTTAC
* *
58916131 TTATTTATGTTTTTATTCATTT
1 TTATTTAAGATTTTATTCATTT
58916153 TTATTTAAGATTTTATT-ATTT
1 TTATTTAAGATTTTATTCATTT
58916174 TT
1 TT
58916176 TTAAATTATC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.71
Consensus pattern (22 bp):
TTATTTAAGATTTTATTCATTT
Found at i:58916329 original size:33 final size:30
Alignment explanation
Indices: 58916290--58916370 Score: 90
Period size: 33 Copynumber: 2.6 Consensus size: 30
58916280 AAATTTTCTT
58916290 TATACATGTATTTTTTATTCAAAATTTATACAC
1 TATACAT-TATTTTTTATTCAAAATTTA-A-AC
* * * *
58916323 TATACATTATATATTATTTTAAAATTTAAAT
1 TATACATTATTTTTTA-TTCAAAATTTAAAC
58916354 TATACATTATTTTTTAT
1 TATACATTATTTTTTAT
58916371 ATATATTGTT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
30 1 0.02
31 15 0.37
32 8 0.20
33 17 0.41
ACGTcount: A:0.38, C:0.07, G:0.01, T:0.53
Consensus pattern (30 bp):
TATACATTATTTTTTATTCAAAATTTAAAC
Found at i:58916361 original size:31 final size:31
Alignment explanation
Indices: 58916273--58916363 Score: 85
Period size: 31 Copynumber: 2.9 Consensus size: 31
58916263 GTAAAATTTC
*** * *
58916273 TATTTTAAAATTTTCTTTATACATGTATTTTT
1 TATTTTAAAATTTAAATTATACAT-TATATAT
* *
58916305 TA-TTCAAAATTTATACACTATACATTATATAT
1 TATTTTAAAATTTA-A-ATTATACATTATATAT
58916337 TATTTTAAAATTTAAATTATACATTAT
1 TATTTTAAAATTTAAATTATACATTAT
58916364 TTTTTATATA
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
31 20 0.43
32 10 0.21
33 17 0.36
ACGTcount: A:0.38, C:0.08, G:0.01, T:0.53
Consensus pattern (31 bp):
TATTTTAAAATTTAAATTATACATTATATAT
Found at i:58916556 original size:29 final size:29
Alignment explanation
Indices: 58916524--58916596 Score: 71
Period size: 29 Copynumber: 2.5 Consensus size: 29
58916514 CATATGTTAT
58916524 TTTATACATATAATTT-TTTTTAAAATATA
1 TTTATA-ATATAATTTGTTTTTAAAATATA
* *
58916553 TTTAT-ATATATTTGTGTTTTTAAAATTTA
1 TTTATAATATAATT-TGTTTTTAAAATATA
*
58916582 -TTACATATATAATTT
1 TTTATA-ATATAATTT
58916597 AAGATAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
27 7 0.19
28 4 0.11
29 18 0.50
30 7 0.19
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (29 bp):
TTTATAATATAATTTGTTTTTAAAATATA
Found at i:58921498 original size:28 final size:28
Alignment explanation
Indices: 58921458--58921536 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
58921448 GCAATCAAAT
* * *
58921458 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
58921486 ATGGCACTTAGTGTGTGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
58921514 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
58921537 CGAATGATTC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:58923216 original size:29 final size:29
Alignment explanation
Indices: 58923182--58923279 Score: 126
Period size: 29 Copynumber: 3.4 Consensus size: 29
58923172 AACCGAGCAT
58923182 TGTGTGTGCGAGATCGGTTGTTGAGGCAC
1 TGTGTGTGCGAGATCGGTTGTTGAGGCAC
* * **** *
58923211 TGTGTGTGCGAGTTCCG-TAACCAAGCAC
1 TGTGTGTGCGAGATCGGTTGTTGAGGCAC
58923239 TGTGTGTGCGAGATCGGTTGTTGAGGCAC
1 TGTGTGTGCGAGATCGGTTGTTGAGGCAC
58923268 TGTGTGTGCGAG
1 TGTGTGTGCGAG
58923280 TTCCATAACC
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
28 21 0.39
29 33 0.61
ACGTcount: A:0.15, C:0.16, G:0.39, T:0.30
Consensus pattern (29 bp):
TGTGTGTGCGAGATCGGTTGTTGAGGCAC
Found at i:58923217 original size:57 final size:57
Alignment explanation
Indices: 58923148--58923334 Score: 284
Period size: 57 Copynumber: 3.2 Consensus size: 57
58923138 AAGTGAACAT
** * *
58923148 AGGCACTGTGTGTATGAGTTCCGTAACCGAGCATTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
58923205 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
58923262 AGGCACTGTGTGTGCGAGTTCCATAACCAAGCACTGTGTGTGCAAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
*
58923319 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
58923335 AAATGAGATC
Statistics
Matches: 120, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
57 113 0.94
59 7 0.06
ACGTcount: A:0.19, C:0.18, G:0.34, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:58923246 original size:28 final size:28
Alignment explanation
Indices: 58923150--58923304 Score: 121
Period size: 28 Copynumber: 5.5 Consensus size: 28
58923140 GTGAACATAG
** *
58923150 GCACTGTGTGTATGAGTTCCGTAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * * **** *
58923178 GCATTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
58923207 GCACTGTGTGTGCGAGTTCCGTAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
* * **** *
58923235 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGTTCCG-TAACCAA
*
58923264 GCACTGTGTGTGCGAGTTCCATAACCAA
1 GCACTGTGTGTGCGAGTTCCGTAACCAA
58923292 GCACTGTGTGTGC
1 GCACTGTGTGTGC
58923305 AAGATCAGTT
Statistics
Matches: 91, Mismatches: 34, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
28 52 0.57
29 39 0.43
ACGTcount: A:0.18, C:0.19, G:0.34, T:0.29
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCAA
Found at i:58924761 original size:19 final size:19
Alignment explanation
Indices: 58924739--58924777 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
58924729 TATGAGAATG
58924739 TTATCTATATATATTGATA
1 TTATCTATATATATTGATA
58924758 TTATCTATATATATTGATA
1 TTATCTATATATATTGATA
58924777 T
1 T
58924778 ATGAAAGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (19 bp):
TTATCTATATATATTGATA
Found at i:58926012 original size:13 final size:13
Alignment explanation
Indices: 58925994--58926021 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
58925984 ACATATTATA
58925994 AATATTTTGTGTT
1 AATATTTTGTGTT
58926007 AATATTTTGTGTT
1 AATATTTTGTGTT
58926020 AA
1 AA
58926022 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:58927492 original size:40 final size:40
Alignment explanation
Indices: 58927444--58927769 Score: 458
Period size: 40 Copynumber: 8.2 Consensus size: 40
58927434 GGACTAAGAT
*
58927444 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
58927484 CCAAAGGCATTTGTGCTAGTGACTATATTCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
58927524 CCAAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
58927564 CCGAAGGCATTTGTACGAGTTACCATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
58927604 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
58927644 CTGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
58927684 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
58927724 CCAAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
58927763 CCGAAGG
1 CCGAAGG
58927770 TACTTGGGTT
Statistics
Matches: 252, Mismatches: 33, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
39 14 0.06
40 236 0.94
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:58931815 original size:28 final size:28
Alignment explanation
Indices: 58931775--58931853 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
58931765 GCAATCAAAT
* * *
58931775 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
58931803 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
58931831 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
58931854 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:58934749 original size:40 final size:40
Alignment explanation
Indices: 58934704--58934871 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
58934694 CGGAATATAA
58934704 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
58934744 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
58934784 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
58934824 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
58934864 CCGGATAT
1 CCGGATAT
58934872 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:58940911 original size:93 final size:93
Alignment explanation
Indices: 58940799--58940970 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
58940789 GCCCATAAGT
* *
58940799 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
58940864 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
58940892 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
58940957 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
58940971 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:58940966 original size:46 final size:46
Alignment explanation
Indices: 58940791--58940966 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
58940781 TGTAACCCGC
* * *
58940791 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
58940837 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
58940887 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
58940930 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
58940967 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:58943395 original size:30 final size:30
Alignment explanation
Indices: 58943351--58943439 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
58943341 CAAAGATAAC
58943351 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
58943380 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
58943410 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
58943440 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:58943399 original size:15 final size:15
Alignment explanation
Indices: 58943351--58943430 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
58943341 CAAAGATAAC
*
58943351 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
58943365 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
58943380 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
58943395 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
58943410 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
58943425 AAGAAA
1 AAGAAA
58943431 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:58943439 original size:15 final size:15
Alignment explanation
Indices: 58943362--58943439 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
58943352 AGAAAACCGA
58943362 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
58943377 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
58943391 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
58943406 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
58943422 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
58943437 ATA
1 ATA
58943440 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:58946500 original size:93 final size:93
Alignment explanation
Indices: 58946388--58946559 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
58946378 GCCCATAAGT
* *
58946388 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
58946453 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
58946481 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
58946546 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
58946560 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:58946555 original size:46 final size:46
Alignment explanation
Indices: 58946380--58946555 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
58946370 TGTAACCCGC
* * *
58946380 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
58946426 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
58946476 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
58946519 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
58946556 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:58951228 original size:80 final size:80
Alignment explanation
Indices: 58951094--58951245 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
58951084 AAAATCACGT
* *
58951094 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
58951159 CGGATATAGTCACTA
66 CGGATATAGTCACTA
* * ** * *
58951174 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGGCTTAG
58951237 CCCGGATAT
64 CCCGGATAT
58951246 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGTCACTA
Found at i:58951245 original size:40 final size:40
Alignment explanation
Indices: 58951078--58951245 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
58951068 CGGAATATAA
* ** *
58951078 CCGGATAAAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
* *
58951118 CCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* * *
58951158 CCGGATATAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
58951198 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
58951238 CCGGATAT
1 CCGGATAT
58951246 CATTCAATTT
Statistics
Matches: 108, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 2 0.02
40 104 0.96
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:58955004 original size:26 final size:26
Alignment explanation
Indices: 58954975--58955051 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
58954965 AATCAAAATT
*
58954975 AAAAAAGAAATAAAAAGAAAAAATCCA
1 AAAAAAGAAA-AAAAAGAAAAAATCAA
* **
58955002 AAAAAAGGAAAAAAAGAACTAATCAA
1 AAAAAAGAAAAAAAAGAAAAAATCAA
*
58955028 AAAAATTGAAAAAAGAAAGAAAAA
1 AAAAA-AG-AAAAA-AAAGAAAAA
58955052 GGGGAGGCCA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 18 0.46
27 10 0.26
28 4 0.10
29 7 0.18
ACGTcount: A:0.77, C:0.05, G:0.10, T:0.08
Consensus pattern (26 bp):
AAAAAAGAAAAAAAAGAAAAAATCAA
Found at i:58955014 original size:25 final size:26
Alignment explanation
Indices: 58954986--58955045 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
58954976 AAAAAGAAAT
58954986 AAAAAGAAAAAATCCAAAAAAA-GGAA
1 AAAAAGAAAAAAT-CAAAAAAATGGAA
** *
58955012 AAAAAGAACTAATCAAAAAAATTG-A
1 AAAAAGAAAAAATCAAAAAAATGGAA
58955037 AAAAAGAAA
1 AAAAAGAAA
58955046 GAAAAAGGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 17 0.59
26 12 0.41
ACGTcount: A:0.75, C:0.07, G:0.10, T:0.08
Consensus pattern (26 bp):
AAAAAGAAAAAATCAAAAAAATGGAA
Found at i:58956228 original size:64 final size:64
Alignment explanation
Indices: 58956121--58956312 Score: 312
Period size: 64 Copynumber: 3.0 Consensus size: 64
58956111 TCATTCATAA
* ** * *
58956121 CACATCCAGTTAGGAGCATTTGATTCATTTCAATCACAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAACATCCTAATTATTTGACATAAGCAT
* *
58956185 CACATCTAGTTAGGTGCATTTGATTCATTTTGATCATATCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAACATCCTAATTATTTGACATAAGCAT
*
58956249 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAACATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAACATCCTAATTATTTGACATAAGCAT
58956313 GATACATGAA
Statistics
Matches: 119, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 119 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAACATCCTAATTATTTGACATAAGCAT
Found at i:58956845 original size:180 final size:179
Alignment explanation
Indices: 58956543--58957251 Score: 886
Period size: 180 Copynumber: 4.0 Consensus size: 179
58956533 AAGGTCTTAC
* * *
58956543 CTCCCTGAAGTTGCAGTGGAGCAGATC--GAAGATGG-TGAATCTTATCTCCATGTATCGACAAT
1 CTCCCTGAAGTTGCAGCGGAGCAGATCTTCAAGATGGCT-AATCTTATCTCCATGTATCGGCAAT
* * *
58956605 GGAGCAGATTTTA-CC-CCTAGCCTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTAAAGAATGAG
65 GGAGCAGATTTAAGCCACC-AGCCTTATCTCTCTGAGGTAATAAGAGAGCAGGTTGAAGAATGAG
* * * *
58956668 TCTTATCTTCTTGAGGCAGCAAGGAAGTAGACTGGGAATTAAAGATTTTAT
129 TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGGAATTGAAGATTTTAT
* *
58956719 CTCCTTGAAGTTGCAGCGGAGCAGATCTTCACAGATGGCTAATCTTATCTCTATGTATCGGCAAT
1 CTCCCTGAAGTTGCAGCGGAGCAGATCTTCA-AGATGGCTAATCTTATCTCCATGTATCGGCAAT
*
58956784 GGGGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAATAAGAGAGCAGGTTGAAGAATGAGT
65 GGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAATAAGAGAGCAGGTTGAAGAATGAGT
*
58956849 CTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGGGAATTGAAGATTTTAT
130 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGGAATTGAAGATTTTAT
* *
58956899 CTCCCTGAAGTTGCAGCGGAGTAAATCTTCACAGATGGCTAATCTTATCTCCATGTATCGGCAAT
1 CTCCCTGAAGTTGCAGCGGAGCAGATCTTCA-AGATGGCTAATCTTATCTCCATGTATCGGCAAT
* *
58956964 GGGGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAATAAGAGAGCAGGTTGAACAATGAGT
65 GGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAATAAGAGAGCAGGTTGAAGAATGAGT
* * * * * *
58957029 CTTATCTTCCTAAGGTAGTAAGAAAGCGGATTGGCG-ATTGAAGATCTTAT
130 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGG-GAATTGAAGATTTTAT
* * * * ** * * *
58957079 CTCCCT-AAGTAGTAGCGGAGCAGA--TTGAAAATGGAGAATCTTATATTCATTTA-CAGGCAAT
1 CTCCCTGAAGTTGCAGCGGAGCAGATCTTCAAGATGGCTAATCTTATCTCCATGTATC-GGCAAT
* ** * *
58957140 GGAGCAGATTTTAGCCACTGGCCTTATCTCTCTGAGG-AAGCAAGAGAGCAGGTTGAA-TATGGT
65 GGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAA-TAAGAGAGCAGGTTGAAGAAT-G-
*
58957203 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT-GAAGATTGAAGATT
127 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGGA-ATTGAAGATT
58957252 GGAAGAGGCA
Statistics
Matches: 472, Mismatches: 48, Indels: 25
0.87 0.09 0.05
Matches are distributed among these distances:
175 5 0.01
176 101 0.21
177 42 0.09
178 1 0.00
179 54 0.11
180 266 0.56
181 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (179 bp):
CTCCCTGAAGTTGCAGCGGAGCAGATCTTCAAGATGGCTAATCTTATCTCCATGTATCGGCAATG
GAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAATAAGAGAGCAGGTTGAAGAATGAGTC
TTATCTTCCTGAGGTAGCAAGGAAGCAGACTGGGAATTGAAGATTTTAT
Found at i:58957150 original size:356 final size:356
Alignment explanation
Indices: 58956490--58957251 Score: 884
Period size: 356 Copynumber: 2.1 Consensus size: 356
58956480 GATCATAACA
* * * * * ** * * *
58956490 AGTCTTATCTCCCTGAGGTTGC-AGTGGAGTAGACTAAAGATCAAAGGTCTTACCTCCCTGAAGT
1 AGTCTTATCTTCCTGAGGTAGCAAG-GAAGCAGACTGAAGATTGAAGATTTTATCTCCCTGAAGT
* * * *
58956554 TGCAGTGGAGCAGATCGAAGATGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTTAC
65 TGCAGCGGAGCAAATCCAAGATGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAC
* * * *
58956619 CCCTAGCCTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTAAAGAATGAGTCTTATCTTCTTGAGG
130 CCCTAGCCTTATCTCTCTGAGGTAATAAGAGAGCAGGTTAAACAATGAGTCTTATCTTCCTAAGG
* * * * *
58956684 CAGCAAGGAAGTAGACTGGGAATTAAAGATTTTATCTCCTTGAAGTTGCAGCGGAGCAGATCTTC
195 CAGCAAGAAAGCAGACTGGGAATTAAAGATCTTATCTCCCTGAAGTAGCAGCGGAGCAGA-CTTC
* ** *
58956749 ACAGATGGCTAATCTTATCTCTATGTATCGGCAATGGGGCAGATTTAAGCCACCAGCCTTATCTC
259 ACAAATGGAGAATCTTATCTCTATGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTC
*
58956814 TCTGAGGTAA-TAAGAGAGCAGGTTGAAGAAT-G-
324 TCTGAGG-AAGCAAGAGAGCAGGTTGAA-AATGGT
* *
58956846 AGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTG-GGAATTGAAGATTTTATCTCCCTGAAGT
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAG-ATTGAAGATTTTATCTCCCTGAAGT
* * *
58956910 TGCAGCGGAGTAAATCTTCACAGATGGCT-AATCTTATCTCCATGTATCGGCAATGGGGCAGATT
65 TGCAGCGGAGCAAATC--CA-AGATGG-TGAATCTTATCTCCATGTATCGACAATGGAGCAGATT
*
58956974 TAAGCCACC-AGCCTTATCTCTCTGAGGTAATAAGAGAGCAGGTTGAACAATGAGTCTTATCTTC
126 TAA-CC-CCTAGCCTTATCTCTCTGAGGTAATAAGAGAGCAGGTTAAACAATGAGTCTTATCTTC
* * * * * *
58957038 CTAAGGTAGTAAGAAAGCGGATTGGCG-ATTGAAGATCTTATCTCCCT-AAGTAGTAGCGGAGCA
189 CTAAGGCAGCAAGAAAGCAGACTGG-GAATTAAAGATCTTATCTCCCTGAAGTAGCAGCGGAGCA
* * * * **
58957101 GA-TTGA-AAATGGAGAATCTTATAT-TCATTTA-CAGGCAATGGAGCAGATTTTAGCCACTGGC
253 GACTTCACAAATGGAGAATCTTATCTCT-ATGTATC-GGCAATGGAGCAGATTTAAGCCACCAGC
*
58957162 CTTATCTCTCTGAGGAAGCAAGAGAGCAGGTTGAATATGGT
316 CTTATCTCTCTGAGGAAGCAAGAGAGCAGGTTGAAAATGGT
58957203 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATT
1 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATT
58957252 GGAAGAGGCA
Statistics
Matches: 342, Mismatches: 49, Indels: 29
0.81 0.12 0.07
Matches are distributed among these distances:
355 7 0.02
356 134 0.39
357 50 0.15
358 2 0.01
359 57 0.17
360 89 0.26
361 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (356 bp):
AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATTTTATCTCCCTGAAGTT
GCAGCGGAGCAAATCCAAGATGGTGAATCTTATCTCCATGTATCGACAATGGAGCAGATTTAACC
CCTAGCCTTATCTCTCTGAGGTAATAAGAGAGCAGGTTAAACAATGAGTCTTATCTTCCTAAGGC
AGCAAGAAAGCAGACTGGGAATTAAAGATCTTATCTCCCTGAAGTAGCAGCGGAGCAGACTTCAC
AAATGGAGAATCTTATCTCTATGTATCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTC
TGAGGAAGCAAGAGAGCAGGTTGAAAATGGT
Found at i:58957364 original size:43 final size:43
Alignment explanation
Indices: 58957310--58957392 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
58957300 GCCTCAAGCT
* **
58957310 TTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTC
1 TTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAGTC
*
58957353 TTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGA
1 TTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGA
58957393 ATATCTTATC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (43 bp):
TTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAGTC
Found at i:58957530 original size:323 final size:323
Alignment explanation
Indices: 58956939--58957573 Score: 894
Period size: 323 Copynumber: 2.0 Consensus size: 323
58956929 ACAGATGGCT
* * *
58956939 AATCTTATCTCCATGTATCGGCAATGGGGCAGATTTAAGCCACCAGCCTTATCTCTCTGAGGTAA
1 AATCTTATCTCCATGTATCGGAAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAA
* * * * **
58957004 TAAGAGAGCAGGTTGAACAATGAGTCTTATCTTCCTAAGGTAGTAAGAAAGCGGATTGGCGATTG
66 CAAGAGAGCAGGTTGAACAATGAGTCTTATCTTCCTAAGGTAGCAAGAAAGCAGACTGAAGATTG
* ** * *
58957069 AAGATCTTATCTCCCTAAGTAGTAGCGGAGCAGATTGAAAATGGAGAATCTTATATTCATTTACA
131 AAGATCTTATCTCCCTAAGCAGTAGAAGAGCAGATTGAAAATGGAGAATCTTATATCCATGTACA
* * *
58957134 GGCAATGGAGCAGATTTTAGCCACTGGCCTTATCTCTCTGAGGAAGCAAGAGAGCAGGTTGAATA
196 GACAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGAAGCAAGAGAGCAGGTTGAAGA
58957199 TGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAGGCA
261 TGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAGGCA
* * * * *
58957262 AATCTTATCTCTATGTATCGGAAATGGAGTAGATTTAAGCCTCAAGCTTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCGGAAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAA
* * * *
58957327 CAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTG
66 CAAGAGAGCAGGTTGAACAATGAGTCTTATCTTCCTAAGGTAGCAAGAAAGCAGACTGAAGATTG
* * * * * *
58957392 AATATCTTATCTCCCTAAGCAGTAGAAGAGCAGTTTGAAGATGGCGAGTCTTATCTCCATGTATC
131 AAGATCTTATCTCCCTAAGCAGTAGAAGAGCAGATTGAAAATGGAGAATCTTATATCCATGTA-C
* * * * **
58957457 -GATAATGGAGCAGATTTTAGCCATTAGCCTTATCTCTCTGAGGTAGTAAGAGAGCAGGTTGGCG
195 AGACAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGAAGCAAGAGAGCAGGTTGAAG
* *
58957521 ATTGTAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
260 ATGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
58957574 CTATTTCCGT
Statistics
Matches: 271, Mismatches: 40, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
323 270 1.00
324 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (323 bp):
AATCTTATCTCCATGTATCGGAAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAGGTAA
CAAGAGAGCAGGTTGAACAATGAGTCTTATCTTCCTAAGGTAGCAAGAAAGCAGACTGAAGATTG
AAGATCTTATCTCCCTAAGCAGTAGAAGAGCAGATTGAAAATGGAGAATCTTATATCCATGTACA
GACAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGAAGCAAGAGAGCAGGTTGAAGA
TGGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAGGCA
Found at i:58957589 original size:176 final size:173
Alignment explanation
Indices: 58957262--58957650 Score: 505
Period size: 176 Copynumber: 2.2 Consensus size: 173
58957252 GGAAGAGGCA
* * *
58957262 AATCTTATCTCTATGTATCGGAAATGGAGTAGATTTAAGCCTCAAGCTTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATC-GAAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAG
58957327 CAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTG
65 CAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTG
* * *
58957392 AATATCTTATCTCCCTAAGCAGTAGAAGAGCAGTTTGAAGATGGCG
130 AAGATCTTATCTCCCTAAGCAGTAGAAGAGCA--TCGAAGATGGAG
* * *
58957438 AGTCTTATCTCCATGTATCGATAATGGAGCAGATTTTAGCCAT-TAGCCTTATCTCTCTGAGGTA
1 AATCTTATCTCCATGTATCGA-AATGGAGCAGATTTAAGCC-TCAAGCCTTATCTCTCTGAGGTA
* ** *
58957502 GTAAGAGAGCAGGTTGGCGATTGTAGTCTTATC-TTCTTGAGGTAGCAAGGAAGCAGACTGAAGA
64 GCAAGAGAGCAGGTTGAAGATTG-AGTCTTATCTTTC-TGAGGTAGCAAGAAAGCAGACTGAAGA
* * * ** *
58957566 TTGAAGATC-TATTTCCGTAAGCAGTTGTGGAGCATCGAGGATGGAG
127 TTGAAGATCTTATCTCCCTAAGCAGTAGAAGAGCATCGAAGATGGAG
*
58957612 AATCTTATCTCCATTTATCGACAATGGAGCAGATTTAAG
1 AATCTTATCTCCATGTATCGA-AATGGAGCAGATTTAAG
58957651 TCACCAGTCC
Statistics
Matches: 186, Mismatches: 23, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
174 44 0.24
175 2 0.01
176 96 0.52
177 44 0.24
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (173 bp):
AATCTTATCTCCATGTATCGAAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAGC
AAGAGAGCAGGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGA
AGATCTTATCTCCCTAAGCAGTAGAAGAGCATCGAAGATGGAG
Found at i:58970856 original size:40 final size:40
Alignment explanation
Indices: 58970810--58971034 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
58970800 CTTGCACAAG
* * *
58970810 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
58970850 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
58970890 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
58970930 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
58970970 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* * *
58971011 GCCTTCGGGACTTATCCTGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
58971035 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.82
41 27 0.17
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:58970905 original size:80 final size:80
Alignment explanation
Indices: 58970774--58971034 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
58970764 CTCAAGTAAT
* * * * * * *
58970774 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
58970837 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
58970852 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
58970916 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
58970932 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
58970997 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
* *
58971013 CTTCGGGACTTATCCTGGATAT
1 CTTCGGGACTTAGCCCGGATAT
58971035 CATTCGAATA
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 94 0.61
81 31 0.20
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:58973446 original size:40 final size:40
Alignment explanation
Indices: 58973402--58973551 Score: 212
Period size: 40 Copynumber: 3.8 Consensus size: 40
58973392 ATAACCACAA
58973402 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
58973442 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
* * *** *
58973482 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
* *
58973522 GCACGAA-TGCCTTTGGGTCTTAGCCCGGAT
1 GCAC-AATTGCCTTCGGGTCTTAACCCGGAT
58973552 ATAATCACTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 100 0.98
41 2 0.02
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
Found at i:58973552 original size:40 final size:40
Alignment explanation
Indices: 58973386--58973589 Score: 205
Period size: 40 Copynumber: 5.1 Consensus size: 40
58973376 CGGGATTCAA
* * *
58973386 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
* *** * *
58973426 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
* *** *
58973466 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
* *
58973506 CCGGATATAACAACTCGCACGAA-TGCCTTTGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATTGCCTTCGGGTCTTAGC
* * *
58973546 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTAGCACAATTGCCTTCGGGTCTTAGC
58973586 CCGG
1 CCGG
58973590 GTATCATTCA
Statistics
Matches: 143, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
39 2 0.01
40 138 0.97
41 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:58977835 original size:48 final size:47
Alignment explanation
Indices: 58977762--58977892 Score: 181
Period size: 48 Copynumber: 2.7 Consensus size: 47
58977752 ACACATATCG
58977762 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT
* * *
58977809 ATAGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT
1 AT-GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT
* * * *
58977857 GTGGCAGACGCCGTGTCCCAGACATGGTCTTACACT
1 ATGTC-GATGCCATGTCCCAGACATGGTCTTACACT
58977893 AACACACATA
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
47 4 0.05
48 69 0.95
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (47 bp):
ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT
Found at i:58984558 original size:37 final size:37
Alignment explanation
Indices: 58984505--58984644 Score: 226
Period size: 37 Copynumber: 3.8 Consensus size: 37
58984495 CGAATAGTCC
* *
58984505 CCACATGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* * *
58984542 ACACATGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
58984579 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
58984616 CCACACGTAGTCATCGGGTCTTACACGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
58984645 ATATATTTCC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 96 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:58984845 original size:48 final size:48
Alignment explanation
Indices: 58984785--58985209 Score: 742
Period size: 48 Copynumber: 8.9 Consensus size: 48
58984775 ATATACACAC
* * *
58984785 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACTACACATACAT
1 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
58984833 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACAGATACAT
1 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
58984881 ATCTCGTACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
58984929 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
58984977 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
58985025 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
58985073 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
58985121 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
58985169 ATCTCATACATATTTCACATTAGCCATTTGGTTTTACCACA
1 ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACA
58985210 CACATATATA
Statistics
Matches: 364, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 364 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.34
Consensus pattern (48 bp):
ATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:58989331 original size:31 final size:31
Alignment explanation
Indices: 58989288--58989433 Score: 215
Period size: 31 Copynumber: 4.7 Consensus size: 31
58989278 TTAGTCTTGA
*
58989288 CATAT-ACTGGGCTGAAGCCTTTCCATAAAT
1 CATATCACTGGGCTGAAGCCTTTTCATAAAT
58989318 CATATCACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCTGAAGCCTTTTCATAAAT
* *
58989349 CATATAACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCTGAAGCCTTTTCATAAAT
*
58989380 CATATCACTGGG-TCGAACCCTTTTCATAAAT
1 CATATCACTGGGCT-GAAGCCTTTTCATAAAT
* *
58989411 CATATCACGGGGCCGAAGCCTTT
1 CATATCACTGGGCTGAAGCCTTT
58989434 ACTGTAAACG
Statistics
Matches: 104, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
30 5 0.05
31 99 0.95
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCTGAAGCCTTTTCATAAAT
Found at i:58989504 original size:42 final size:42
Alignment explanation
Indices: 58989457--58989548 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
58989447 TGGCCCTTAG
*
58989457 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
58989499 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
58989541 GCCCATTT
1 GCCCATTT
58989549 GGGGAGACTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:58989724 original size:25 final size:25
Alignment explanation
Indices: 58989696--58989765 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
58989686 CTCTTTTAAT
58989696 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
* * *
58989721 AACTGTGGTAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
58989746 AATTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
58989766 AGCACTTCCT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
25 33 0.89
26 4 0.11
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:58994173 original size:27 final size:27
Alignment explanation
Indices: 58994143--58994207 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
58994133 GGGCATATTC
58994143 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
58994170 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
58994197 GTCTTTTTACC
1 GTCATTTTACC
58994208 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:58994291 original size:27 final size:27
Alignment explanation
Indices: 58994261--58994346 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
58994251 GTAAATCTAC
58994261 AAACAAAGGGTATTTCAGTAATTTTGT
1 AAACAAAGGGTATTTCAGTAATTTTGT
* *
58994288 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACAAAGGGTATTTC-AGTAATTTTGT
**
58994314 AGAA-AGTCAAGGGTATTTTTGTAATTTTGT
1 A-AACA---AAGGGTATTTCAGTAATTTTGT
58994344 AAA
1 AAA
58994347 TCAGAGGTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
26 2 0.04
27 23 0.50
28 1 0.02
29 18 0.39
30 2 0.04
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (27 bp):
AAACAAAGGGTATTTCAGTAATTTTGT
Found at i:58994373 original size:110 final size:108
Alignment explanation
Indices: 58994246--58994508 Score: 244
Period size: 110 Copynumber: 2.4 Consensus size: 108
58994236 TACAAGGGTG
* *** * * *
58994246 TTTTGGTAAATCTACAAACAAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATT
1 TTTTGGT-AATTTACAAACAAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCGAAAACT
* * **
58994311 TTTAGAAAGTCAAGGGTATTTTT-GTAATTTTGTAAA-TCAGAGGTA
65 TTTACAAACT-AAGGGT-TTTTTGGTAATTTTACAAACT-AGAGGTA
*** * *
58994356 TTTTGGTAATTTAACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGAAAACT
1 TTTTGGTAATTT-ACAAACAAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCGAAAACT
* *
58994421 TTTACAAACTAGGGGTTTTTTGGTAATTTTACAAACTAGGGGTA
65 TTTACAAACTAAGGGTTTTTTGGTAATTTTACAAACTAGAGGTA
** **
58994465 TTTTGGTAATTCTATCCTAC-CGGGGTATTTCAGTAATTTCACAA
1 TTTTGGTAATT-TA-CAAACAAAGGGTATTTCAGTAATTTCACAA
58994509 TCGAGGGTAA
Statistics
Matches: 124, Mismatches: 24, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
108 5 0.04
109 59 0.48
110 60 0.48
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (108 bp):
TTTTGGTAATTTACAAACAAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCGAAAACTT
TTACAAACTAAGGGTTTTTTGGTAATTTTACAAACTAGAGGTA
Found at i:58994374 original size:27 final size:26
Alignment explanation
Indices: 58994325--58994475 Score: 113
Period size: 27 Copynumber: 5.6 Consensus size: 26
58994315 GAAAGTCAAG
* **
58994325 GGTATTTTTGTAATTTTGTAAATCAGA
1 GGTATTTTGGTAATTTTACAAA-CAGA
* **
58994352 GGTATTTTGGTAATTTAACAAATTGA
1 GGTATTTTGGTAATTTTACAAACAGA
* * *
58994378 GGGTATTTCGGTAATTTCACAAACCAGT
1 -GGTATTTTGGTAATTTTACAAA-CAGA
* ** *
58994406 GGTATTTCGAAAACTTTTACAAACTAGG
1 GGTATTTTGGTAA-TTTTACAAAC-AGA
* *
58994434 GGTTTTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAAC-AGA
58994461 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
58994476 CTATCCTACC
Statistics
Matches: 100, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 78 0.78
28 20 0.20
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACAGA
Found at i:58994501 original size:109 final size:110
Alignment explanation
Indices: 58994267--58994508 Score: 258
Period size: 109 Copynumber: 2.2 Consensus size: 110
58994257 CTACAAACAA
*** * * * * *
58994267 AGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTTTAGAAAGTCAAGGGTATTT
1 AGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCGAAAACTTTTACAAACTCAAGGGTATTT
** **
58994332 TTGTAATTTTGTAAATCAGAGGTATTTTGGTAATTTAACAAATTG
66 TTGTAATTTTACAAATCAGAGGTATTTTGGTAATTTAACAAACCG
* * *
58994377 AGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTCGAAAACTTTTACAAACT-AGGGGT-TTT
1 AGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCGAAAACTTTTACAAACTCAAGGGTATTT
* * **
58994440 TTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTCTATCCTACCG
66 TT-GTAATTTTACAAATC-AGAGGTATTTTGGTAATT-TAACAAACCG
58994487 -GGGTATTTCAGTAATTTCACAA
1 AGGGTATTTCAGTAATTTCACAA
58994509 TCGAGGGTAA
Statistics
Matches: 109, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
108 6 0.06
109 54 0.50
110 49 0.45
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40
Consensus pattern (110 bp):
AGGGTATTTCAGTAATTTCACAAACCAATGGTATTTCGAAAACTTTTACAAACTCAAGGGTATTT
TTGTAATTTTACAAATCAGAGGTATTTTGGTAATTTAACAAACCG
Found at i:58994568 original size:27 final size:27
Alignment explanation
Indices: 58994507--58994598 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
58994497 GTAATTTCAC
58994507 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* ** *
58994534 TA-CTGAGGGTGGAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* * *
58994561 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
58994588 AATCGAGGGTA
1 AATCGAGGGTA
58994599 CTTTGGTAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.02
27 50 0.96
28 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:58996336 original size:48 final size:48
Alignment explanation
Indices: 58996134--58996350 Score: 206
Period size: 48 Copynumber: 4.5 Consensus size: 48
58996124 GTAAATTGCT
* * * * * *
58996134 GATGTCATGTCCTAGACATGGTCTTATAATGGCTCACATGTCGAGGCC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATATCGATGCC
* * * * *
58996182 GATGCCATGT-CTCAGACATGGTCTTACACTAGTTCTCGTCTCAATGCC
1 GATGCCATGTCCT-AGACATGGTCTTACACTAGCTCACATATCGATGCC
* ** *
58996230 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATAAT-G-TGGCT
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCACAT-ATCGAT-GCC
* * *
58996278 GACGCTATGTCCTAGACATGGTCTTACACTAGCACACATATCGATGCC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATATCGATGCC
* *
58996326 AATGCCATGTCCCAGACATGGTCTT
1 GATGCCATGTCCTAGACATGGTCTT
58996351 CTATGTCACA
Statistics
Matches: 135, Mismatches: 28, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
47 5 0.04
48 127 0.94
49 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATATCGATGCC
Found at i:58996362 original size:21 final size:21
Alignment explanation
Indices: 58996332--58996371 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
58996322 TGCCAATGCC
*
58996332 ATGTCCCAGACATGGTCTTCT
1 ATGTCACAGACATGGTCTTCT
58996353 ATGTCACAGACATGGTCTT
1 ATGTCACAGACATGGTCTT
58996372 ACACTGGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.33
Consensus pattern (21 bp):
ATGTCACAGACATGGTCTTCT
Found at i:58996433 original size:48 final size:48
Alignment explanation
Indices: 58996353--58996472 Score: 150
Period size: 48 Copynumber: 2.5 Consensus size: 48
58996343 ATGGTCTTCT
* * ** * **
58996353 ATGTCACAGACATGGTCTTACACTGGCTCTCATAATATTTCCGATGCC
1 ATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCAGACACC
* *
58996401 ATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCAGACACC
1 ATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCAGACACC
*
58996449 ATGTCCCAAGCATGGTCTTACACT
1 ATGTCCCAAACATGGTCTTACACT
58996473 AGCACACATA
Statistics
Matches: 61, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (48 bp):
ATGTCCCAAACATGGTCTTACACTGGCTCTCATAATATGGCAGACACC
Found at i:58996466 original size:165 final size:165
Alignment explanation
Indices: 58996188--58996484 Score: 427
Period size: 165 Copynumber: 1.8 Consensus size: 165
58996178 GGCCGATGCC
* * * * *
58996188 ATGTCTCAGACATGGTCTTACACTAGTTCTCGTCTCAATGCCGATGCCATGTCCCAGACATGGTC
1 ATGTCACAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTCCCAAACATGGTC
* * * * *
58996253 TTACACTAGCTCTTATAATGTGGCTGACGCTATGTCCTAGACATGGTCTTACACTAGCACACATA
66 TTACACTAGCTCTCATAATGTGGCAGACACCATGTCCAAGACATGGTCTTACACTAGCACACATA
58996318 TCGATGCCAATGCCATGTCCCAGACATGGTCTTCT
131 TCGATGCCAATGCCATGTCCCAGACATGGTCTTCT
* * * *
58996353 ATGTCACAGACATGGTCTTACACTGGCTCTCATAAT-ATTTCCGATGCCATGTTCCAAACATGGT
1 ATGTCACAGACATGGTCTTACACTAGCTCTCAT-ATCAATGCCGATGCCATGTCCCAAACATGGT
*
58996417 CTTACACTGGCTCTCATAATGTGGCAGACACCATGTCCCAAG-CATGGTCTTACACTAGCACACA
65 CTTACACTAGCTCTCATAATGTGGCAGACACCATGT-CCAAGACATGGTCTTACACTAGCACACA
58996481 TATC
129 TATC
58996485 ACCCAATGTC
Statistics
Matches: 115, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
165 110 0.96
166 5 0.04
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (165 bp):
ATGTCACAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTCCCAAACATGGTC
TTACACTAGCTCTCATAATGTGGCAGACACCATGTCCAAGACATGGTCTTACACTAGCACACATA
TCGATGCCAATGCCATGTCCCAGACATGGTCTTCT
Found at i:58998721 original size:49 final size:50
Alignment explanation
Indices: 58998586--58998722 Score: 177
Period size: 50 Copynumber: 2.8 Consensus size: 50
58998576 TGTAACACCA
* *
58998586 TTTGTGGACAAGCCACAACTGACTTGTAGATAAACTACCACTAATAACAC
1 TTTGTGGACAAGCCACAACTGATTTGTAGATATACTACCACTAATAACAC
* * * * *
58998636 TTTGTGGACAAGCCACCACTGATATGCAGATATACTACCACTGATAA-AT
1 TTTGTGGACAAGCCACAACTGATTTGTAGATATACTACCACTAATAACAC
* * *
58998685 TTTGTGGACAAGCCACTACTGGTTTGTAGATGTACTAC
1 TTTGTGGACAAGCCACAACTGATTTGTAGATATACTAC
58998723 TGGAAACACA
Statistics
Matches: 75, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
49 34 0.45
50 41 0.55
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (50 bp):
TTTGTGGACAAGCCACAACTGATTTGTAGATATACTACCACTAATAACAC
Found at i:58998816 original size:18 final size:18
Alignment explanation
Indices: 58998789--58998829 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
58998779 GTTTCGGTAA
58998789 AATT-ATTATTGA-AAAAT
1 AATTAATTATT-ATAAAAT
*
58998806 ATTTAATTATTATAAAAT
1 AATTAATTATTATAAAAT
58998824 AATTAA
1 AATTAA
58998830 ATTGTACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AATTAATTATTATAAAAT
Found at i:59006013 original size:9 final size:9
Alignment explanation
Indices: 59005995--59006067 Score: 52
Period size: 9 Copynumber: 8.6 Consensus size: 9
59005985 TTTATTAAAG
59005995 TTAA-GTGT
1 TTAATGTGT
59006003 TTAATGTGT
1 TTAATGTGT
59006012 TT--TGTGT
1 TTAATGTGT
59006019 TTAATAAGTGT
1 TTAAT--GTGT
59006030 TTAAATGTGT
1 TT-AATGTGT
* *
59006040 TAAATATG-
1 TTAATGTGT
59006048 TT--TGT-T
1 TTAATGTGT
59006054 TTAATGTGT
1 TTAATGTGT
59006063 TTAAT
1 TTAAT
59006068 TGCAAGTGTC
Statistics
Matches: 51, Mismatches: 4, Indels: 19
0.69 0.05 0.26
Matches are distributed among these distances:
6 4 0.08
7 7 0.14
8 8 0.16
9 18 0.35
10 5 0.10
11 6 0.12
12 3 0.06
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.55
Consensus pattern (9 bp):
TTAATGTGT
Found at i:59007535 original size:36 final size:36
Alignment explanation
Indices: 59007488--59007559 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
59007478 CTTATGATTG
59007488 TGGTTATGATATTTGTGTAGATCTCATGCTCATGAT
1 TGGTTATGATATTTGTGTAGATCTCATGCTCATGAT
59007524 TGGTTATGATATTTGTGTAGATCTCATGCTCATGAT
1 TGGTTATGATATTTGTGTAGATCTCATGCTCATGAT
59007560 ATGTGATGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (36 bp):
TGGTTATGATATTTGTGTAGATCTCATGCTCATGAT
Found at i:59009523 original size:27 final size:27
Alignment explanation
Indices: 59009310--59009603 Score: 308
Period size: 27 Copynumber: 10.9 Consensus size: 27
59009300 TTAGTTTACC
59009310 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* * * *
59009337 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
59009364 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
* * * *
59009391 AAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
**
59009418 AAATTACCAAAATACCCCTGGCTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
59009445 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
59009472 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
59009499 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** **
59009526 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
59009553 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
59009580 AAATTACCAAAGTACCCCTGATTT
1 AAATTACCAAAATACCCCTGATTT
59009604 ACAGAATTAT
Statistics
Matches: 225, Mismatches: 37, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
26 4 0.02
27 216 0.96
28 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:59009672 original size:27 final size:27
Alignment explanation
Indices: 59009635--59009952 Score: 393
Period size: 27 Copynumber: 11.5 Consensus size: 27
59009625 CGATTTACAA
*
59009635 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
59009662 AAATACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
59009689 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
59009716 AATTACTGAAATAACCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
59009743 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
59009770 AATTACCGGAATACCCCTATAGGGTAGAGGGTAG
1 AATTACCGAAATACCCC--T---GT--AGGGTAG
*
59009804 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
59009831 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
59009858 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
59009885 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
59009912 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
59009939 AATTACCGAGATAC
1 AATTACCGAAATAC
59009953 TGTAACGCCC
Statistics
Matches: 257, Mismatches: 27, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
27 227 0.88
29 3 0.01
32 3 0.01
34 24 0.09
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:59009806 original size:34 final size:34
Alignment explanation
Indices: 59009763--59009831 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
59009753 ATACCCCTGT
59009763 AGGGTAGAATTACCGGAATACCCCTATAGGGTAG
1 AGGGTAGAATTACCGGAATACCCCTATAGGGTAG
*
59009797 AGGGTAGAATTACCGGAATACCCCTGTAGGGTAG
1 AGGGTAGAATTACCGGAATACCCCTATAGGGTAG
59009831 A
1 A
59009832 ATTACCGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.20
Consensus pattern (34 bp):
AGGGTAGAATTACCGGAATACCCCTATAGGGTAG
Found at i:59009843 original size:115 final size:115
Alignment explanation
Indices: 59009635--59009912 Score: 390
Period size: 115 Copynumber: 2.5 Consensus size: 115
59009625 CGATTTACAA
* *
59009635 AATTACCGAAATACCTCTGTAGGGTAGAAATACTGAAATA-CCCT-T---GT--AGGGTAGAAAT
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAGGGTAGAAAT
*
59009693 ACCGAAATACCCCTATAGGGTAGAATTACTGAAATAACCCTATAGGGTAG
66 ACCGAAATACCCCTATAGGGTAGAATTACCGAAATAACCCTATAGGGTAG
* * * *
59009743 AATTACCGGAATACCCCTGTAGGGTAGAATTACCGGAATACCCCTATAGGGTAGAGGGTAGAATT
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAGGGTAGAAAT
* * * *
59009808 ACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
66 ACCGAAATACCCCTATAGGGTAGAATTACCGAAATAACCCTATAGGGTAG
* *
59009858 AATTATCGCAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGA
59009913 ATTACTAAAA
Statistics
Matches: 148, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
108 35 0.24
109 4 0.03
110 1 0.01
113 2 0.01
115 106 0.72
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (115 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAGGGTAGAAAT
ACCGAAATACCCCTATAGGGTAGAATTACCGAAATAACCCTATAGGGTAG
Found at i:59009846 original size:142 final size:142
Alignment explanation
Indices: 59009655--59009936 Score: 404
Period size: 142 Copynumber: 2.0 Consensus size: 142
59009645 ATACCTCTGT
* *
59009655 AGGGTAGAAATACTGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATT
1 AGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATT
* * **
59009720 A-CTGAAATAACCCTATAGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGGAATAC
66 ATC-GAAATAACCCTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATAC
59009784 CCCTATAGGGTAG
130 CCCTATAGGGTAG
* * * *
59009797 AGGGTAGAATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATT
1 AGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATT
* * * * *
59009862 ATCGCAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACTAAAATACC
66 ATCGAAATAACCCTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACC
*
59009927 CCTGTAGGGT
131 CCTATAGGGT
59009937 GGAATTACCG
Statistics
Matches: 123, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
142 122 0.99
143 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (142 bp):
AGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATT
ATCGAAATAACCCTATAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACCAAAATACC
CCTATAGGGTAG
Found at i:59009855 original size:169 final size:169
Alignment explanation
Indices: 59009635--59009946 Score: 498
Period size: 169 Copynumber: 1.8 Consensus size: 169
59009625 CGATTTACAA
* * *
59009635 AATTACCGAAATACCTCTGTAGGGTAGAAATACTGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAA
**
59009700 TACCCCTATAGGGTAGAATTACTGAAATAACCCTATAGGGTAGAATTACCGGAATACCCCTGTAG
66 TACCCCTATAGGGTAGAATTACTGAAATAACCCTATAGGGTAGAATTACCAAAATACCCCTGTAG
59009765 GGTAGAATTACCGGAATACCCCTATAGGGTAGAGGGTAG
131 GGTAGAATTACCGGAATACCCCTATAGGGTAGAGGGTAG
* * * * *
59009804 AATTACCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAA
1 AATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAA
* * *
59009869 TACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAG
66 TACCCCTATAGGGTAGAATTACTGAAATAACCCTATAGGGTAGAATTACCAAAATACCCCTGTAG
*
59009934 GGTGGAATTACCG
131 GGTAGAATTACCG
59009947 AGATACTGTA
Statistics
Matches: 129, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
169 129 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (169 bp):
AATTACCGAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAA
TACCCCTATAGGGTAGAATTACTGAAATAACCCTATAGGGTAGAATTACCAAAATACCCCTGTAG
GGTAGAATTACCGGAATACCCCTATAGGGTAGAGGGTAG
Found at i:59010305 original size:26 final size:26
Alignment explanation
Indices: 59010276--59010329 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
59010266 TGGTACAAAT
59010276 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
59010302 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
59010328 TG
1 TG
59010330 TTGGGCATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:59013414 original size:22 final size:22
Alignment explanation
Indices: 59013384--59013442 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
59013374 AAGCCTTCTG
*
59013384 ATTATGGCTTTGTGTC-AACCTA
1 ATTATGGCTCTGTG-CGAACCTA
59013406 CA-TATGGCTCTGTGCGAACCTA
1 -ATTATGGCTCTGTGCGAACCTA
*
59013428 ATTATGGCTGTGTGC
1 ATTATGGCTCTGTGC
59013443 CAAACGTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 2 0.06
22 29 0.91
23 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.36
Consensus pattern (22 bp):
ATTATGGCTCTGTGCGAACCTA
Found at i:59013634 original size:27 final size:26
Alignment explanation
Indices: 59013604--59013705 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 26
59013594 ATTCTGTTAA
* *
59013604 GTGGCTTTGCCACATTA-CTTGTTTCTG
1 GTGGCTATGCCACAATATC-TG-TTCTG
59013631 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
*
59013658 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGT-TCTG
* * *
59013685 GTGACTCTGTCACAATATCTG
1 GTGGCTATGCCACAATATCTG
59013706 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
26 9 0.13
27 52 0.78
28 5 0.07
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:59013662 original size:54 final size:53
Alignment explanation
Indices: 59013604--59013705 Score: 125
Period size: 54 Copynumber: 1.9 Consensus size: 53
59013594 ATTCTGTTAA
* * * *
59013604 GTGGCTTTGCCACATTA-CTTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATC-TGTATCTGGTGACTATGCCAC-AATATCTGTTCTG
* *
59013658 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTG
59013706 ATAACTGAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
53 8 0.20
54 32 0.78
55 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:59013875 original size:19 final size:19
Alignment explanation
Indices: 59013853--59013910 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
59013843 TTCTGATTTT
59013853 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
59013872 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
59013884 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
59013903 TGATTCTG
1 TGATTCTG
59013911 ATTTTGTCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:59013880 original size:6 final size:6
Alignment explanation
Indices: 59013842--59013945 Score: 52
Period size: 6 Copynumber: 16.7 Consensus size: 6
59013832 TTGCATTCAC
* * *
59013842 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
59013892 -TTACCTG ATACTG ATTCTG ATTTTG -TCACCTA ATTCTG ATTCTG ATTCTA
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
59013942 ATTC
1 ATTC
59013946 AAGTTCTGAT
Statistics
Matches: 73, Mismatches: 15, Indels: 20
0.68 0.14 0.19
Matches are distributed among these distances:
5 5 0.07
6 53 0.73
7 12 0.16
8 3 0.04
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:59013888 original size:31 final size:31
Alignment explanation
Indices: 59013842--59013916 Score: 141
Period size: 31 Copynumber: 2.4 Consensus size: 31
59013832 TTGCATTCAC
59013842 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
59013874 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
59013905 ATTCTGATTTTG
1 ATTCTGATTTTG
59013917 TCACCTAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
31 36 0.84
32 7 0.16
ACGTcount: A:0.19, C:0.15, G:0.16, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Done.