Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 197 of 425
Found at i:59964027 original size:25 final size:25
Alignment explanation
Indices: 59963917--59964035 Score: 56
Period size: 25 Copynumber: 4.9 Consensus size: 25
59963907 TTAAACCCTA
*
59963917 AATCATAATCCTTAAACC-CATAATT
1 AATCATAAACCTTAAACCAC-TAATT
* * * *
59963942 CATCATAAATCTTCAAA-TACTAGTT
1 AATCATAAACCTT-AAACCACTAATT
*
59963967 AACTCGTAAACCTTAAACC-CT-A--
1 AA-TCATAAACCTTAAACCACTAATT
* * * *
59963989 AACCATATATCTTAAACCA-TAGTT
1 AATCATAAACCTTAAACCACTAATT
59964013 AACTCATAAACCTTAAACC-CTAA
1 AA-TCATAAACCTTAAACCACTAA
59964036 ACCATATATC
Statistics
Matches: 65, Mismatches: 19, Indels: 20
0.62 0.18 0.19
Matches are distributed among these distances:
21 13 0.20
22 2 0.03
24 2 0.03
25 35 0.54
26 13 0.20
ACGTcount: A:0.43, C:0.25, G:0.03, T:0.29
Consensus pattern (25 bp):
AATCATAAACCTTAAACCACTAATT
Found at i:59964070 original size:14 final size:14
Alignment explanation
Indices: 59963973--59964070 Score: 70
Period size: 14 Copynumber: 6.7 Consensus size: 14
59963963 AGTTAACTCG
* *
59963973 TAAACCTTAAACCC
1 TAAACCATAAACCT
* *
59963987 TAAACCATATATCT
1 TAAACCATAAACCT
*
59964001 TAAACCATAGTTAACTCA
1 TAAACCATA---AAC-CT
* *
59964019 TAAACCTTAAACCC
1 TAAACCATAAACCT
* *
59964033 TAAACCATATATCT
1 TAAACCATAAACCT
59964047 TAAACCATAAACCT
1 TAAACCATAAACCT
*
59964061 TAAACTATAA
1 TAAACCATAA
59964071 TGATAATTAA
Statistics
Matches: 64, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
14 51 0.80
15 3 0.05
17 1 0.02
18 9 0.14
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.28
Consensus pattern (14 bp):
TAAACCATAAACCT
Found at i:59964290 original size:41 final size:41
Alignment explanation
Indices: 59964227--59964475 Score: 290
Period size: 41 Copynumber: 6.1 Consensus size: 41
59964217 GTTATATGAC
*
59964227 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
* *
59964268 TTTTAGCGGCGTTTTATAGAAAGCGCCGCTAAAGCTCTGGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
* *
59964309 TTTTAGCGGCTTTTTACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
* *
59964350 TTTTAGCAGCGTTTTACCGAAAGCGCCGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
* * * *
59964390 TTTTAGTGGCATTTTTTACTA-AAA-CGCCGCTATTGCTCT-AT
1 TTTTAGCGGC--GTTTTAC-AGAAAGCGCCGCTAATGCTCTGGT
** * * *
59964431 TTTTAGCGGCGTTTTTGATAAAACGCCGCTATTGCTCTGTGT
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTG-GT
59964473 TTT
1 TTT
59964476 ACAATTTTTA
Statistics
Matches: 181, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 7 0.04
40 25 0.14
41 135 0.75
42 13 0.07
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGT
Found at i:59964475 original size:123 final size:122
Alignment explanation
Indices: 59964227--59964475 Score: 324
Period size: 123 Copynumber: 2.0 Consensus size: 122
59964217 GTTATATGAC
* * *
59964227 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTATAGAAAGC
1 TTTTAGCAGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCATTTTATAGAAAAC
* *
59964292 GCCGCTAAAGCTCTGGTTTTTAGCGGCTTTTTACCGAAAGCGCCGCTAATGCTCTGGT
66 GCCGCTAAAGCTCTGATTTTTAGCGGCTTTTTA-CGAAAACGCCGCTAATGCTCTGGT
* * *
59964350 TTTTAGCAGCGTTTTACCGAAAGCGCCGCTAATGCTCT-GTTTTTAGTGGCATTTTTTACTAAAA
1 TTTTAGCAGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCATTTTATA-GAAAA
** * *
59964414 CGCCGCTATTGCTCT-ATTTTTAGCGGCGTTTTTGA-TAAAACGCCGCTATTGCTCTGTGT
65 CGCCGCTAAAGCTCTGATTTTTAGCGGC-TTTTT-ACGAAAACGCCGCTAATGCTCTG-GT
59964473 TTT
1 TTT
59964476 ACAATTTTTA
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
122 46 0.42
123 63 0.57
124 1 0.01
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.37
Consensus pattern (122 bp):
TTTTAGCAGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCATTTTATAGAAAAC
GCCGCTAAAGCTCTGATTTTTAGCGGCTTTTTACGAAAACGCCGCTAATGCTCTGGT
Found at i:59964850 original size:2 final size:2
Alignment explanation
Indices: 59964843--59964889 Score: 62
Period size: 2 Copynumber: 24.0 Consensus size: 2
59964833 ACATAACTAA
*
59964843 AT AT AT AT AT AT -T A- ACT AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
59964884 AT AT AT
1 AT AT AT
59964890 TATGAATCAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
1 2 0.05
2 37 0.93
3 1 0.03
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:59966478 original size:13 final size:13
Alignment explanation
Indices: 59966460--59966485 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
59966450 ATATCAATTC
59966460 ACACATAAAATAA
1 ACACATAAAATAA
59966473 ACACATAAAATAA
1 ACACATAAAATAA
59966486 TGTTAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.15, G:0.00, T:0.15
Consensus pattern (13 bp):
ACACATAAAATAA
Found at i:59973868 original size:42 final size:42
Alignment explanation
Indices: 59973756--59973951 Score: 234
Period size: 42 Copynumber: 4.7 Consensus size: 42
59973746 TACCGTACCA
* * *
59973756 ATGCCATATCCCAGATATGGTCTTACA-TATAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGA-AGTCTCATATCG
* * *
59973798 ATGCCAATAGCTCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* *
59973841 ATGCCATATCCCAGATATGGTCTTACACGAAGTCGCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* * * * *
59973883 ATGCCACATACCAAATATGGTCTTACACAAAGTCTCAAAT-G
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
59973924 ATTCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
59973952 TTAATCTTAG
Statistics
Matches: 131, Mismatches: 21, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
41 25 0.19
42 71 0.54
43 34 0.26
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:59973886 original size:85 final size:84
Alignment explanation
Indices: 59973756--59973951 Score: 254
Period size: 85 Copynumber: 2.3 Consensus size: 84
59973746 TACCGTACCA
* * * **
59973756 ATGCCATATCCCAGATATGGTCTTACA-TATAATCTCGTATCGATGCCA-ATAGCTCAGCTATGG
1 ATGCCATATCCCAGATATGGTCTTACACGATAATCGCATATCGATGCCACATA-C-CAAATATGG
* *
59973819 TCTTACACGAAGTCTCATATCG
64 TCTTACACAAAGTCTCAAAT-G
* *
59973841 ATGCCATATCCCAGATATGGTCTTACACGA-AGTCGCATATTGATGCCACATACCAAATATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGATAATCGCATATCGATGCCACATACCAAATATGGTC
59973905 TTACACAAAGTCTCAAATG
66 TTACACAAAGTCTCAAATG
*
59973924 ATTCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
59973952 TTAATCTTAG
Statistics
Matches: 99, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
83 28 0.28
84 25 0.25
85 42 0.42
86 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTACACGATAATCGCATATCGATGCCACATACCAAATATGGTC
TTACACAAAGTCTCAAATG
Found at i:59979509 original size:50 final size:49
Alignment explanation
Indices: 59979402--59979577 Score: 185
Period size: 50 Copynumber: 3.5 Consensus size: 49
59979392 CTGGTACGCA
* * **
59979402 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
* *
59979451 TAGTAGCCTGTACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* *** * *
59979501 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCTAATACACG
59979552 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
59979578 TGCGACCTCA
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 28 0.26
50 40 0.37
51 36 0.34
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:59979575 original size:101 final size:99
Alignment explanation
Indices: 59979402--59979587 Score: 257
Period size: 101 Copynumber: 1.9 Consensus size: 99
59979392 CTGGTACGCA
* * * *
59979402 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGTACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
59979467 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * *
59979501 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCGGGTACACATAGTAGCCTGCAC
*
59979565 TTAGTACTACACATGCGACCTCA
63 TTAGTACTACACACGCGACCTCA
59979588 TAATAGATCA
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
98 4 0.05
99 30 0.40
101 41 0.55
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:59997826 original size:40 final size:41
Alignment explanation
Indices: 59997742--59997835 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 41
59997732 ATCTGTATCG
* * *
59997742 CACACATAGTGCC-TTCTATAGCCGAAGCTATGCCAACTCG
1 CACACTTAGTGCCATTCTATAGCCGAAGCTATGCAAACTCA
**
59997782 CACACTTAGTGCCATT-TATAGCCGAAGCTATATTAAAC-CA
1 CACACTTAGTGCCATTCTATAGCCGAAGCTAT-GCAAACTCA
59997822 CACACTTAGTGCCA
1 CACACTTAGTGCCA
59997836 ATCACAGTCA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 42 0.89
41 5 0.11
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (41 bp):
CACACTTAGTGCCATTCTATAGCCGAAGCTATGCAAACTCA
Found at i:60000106 original size:41 final size:40
Alignment explanation
Indices: 60000053--60000222 Score: 145
Period size: 41 Copynumber: 4.2 Consensus size: 40
60000043 AGTCTGACTC
*
60000053 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
60000092 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * *
60000132 TTATGACACTGGCTCTAAAAAGGCCTTCGA-ATCTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGA-CCAAGCTCGG--A
60000177 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
60000216 TTTAGAC
1 -TTAGAC
60000223 CCCGATTAGC
Statistics
Matches: 105, Mismatches: 10, Indels: 30
0.72 0.07 0.21
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 50 0.48
42 18 0.17
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:60002285 original size:41 final size:40
Alignment explanation
Indices: 60002232--60002418 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
60002222 GCTACTCGTT
*
60002232 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
60002272 CAAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAA-ATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
60002313 CGAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
60002353 CGAATGCCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
60002394 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60002419 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
39 3 0.02
40 81 0.62
41 44 0.34
42 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:60004605 original size:80 final size:80
Alignment explanation
Indices: 60004521--60004669 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
60004511 TATGGTAACC
* * * *
60004521 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
60004585 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
60004601 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
60004666 CCGG
66 CCGG
60004670 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:60004611 original size:40 final size:38
Alignment explanation
Indices: 60004562--60004669 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
60004552 ATCACGATTT
*
60004562 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
60004602 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
60004642 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
60004670 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:60012662 original size:80 final size:80
Alignment explanation
Indices: 60012578--60012726 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
60012568 TATGGTAACC
* * * *
60012578 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
60012642 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
60012658 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
60012723 CCGG
66 CCGG
60012727 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:60012668 original size:40 final size:38
Alignment explanation
Indices: 60012619--60012726 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
60012609 ATCACGATTT
*
60012619 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
60012659 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
60012699 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
60012727 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:60014500 original size:2 final size:2
Alignment explanation
Indices: 60014487--60014516 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
60014477 ATGTGCAAAC
*
60014487 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60014517 GTGCAAGAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:60017745 original size:38 final size:39
Alignment explanation
Indices: 60017693--60017835 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
60017683 GAATGTTCGA
60017693 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
60017732 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
60017770 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
60017809 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
60017836 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:60017781 original size:77 final size:79
Alignment explanation
Indices: 60017694--60017875 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
60017684 AATGTTCGAG
60017694 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
60017757 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
60017771 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
60017836 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
60017850 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
60017876 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:60022361 original size:10 final size:13
Alignment explanation
Indices: 60022335--60022377 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
60022325 TCCGCCGTGC
60022335 GCCACCGTCGCCG
1 GCCACCGTCGCCG
60022348 GCCACCG-CG-C-
1 GCCACCGTCGCCG
60022358 GCCACCGTCGCCG
1 GCCACCGTCGCCG
60022371 GCCACCG
1 GCCACCG
60022378 CGGAAGTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.09, C:0.56, G:0.30, T:0.05
Consensus pattern (13 bp):
GCCACCGTCGCCG
Found at i:60022363 original size:23 final size:23
Alignment explanation
Indices: 60022333--60022379 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
60022323 CCTCCGCCGT
60022333 GCGCCACCGTCGCCGGCCACCGC
1 GCGCCACCGTCGCCGGCCACCGC
60022356 GCGCCACCGTCGCCGGCCACCGC
1 GCGCCACCGTCGCCGGCCACCGC
60022379 G
1 G
60022380 GAAGTTCAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.09, C:0.55, G:0.32, T:0.04
Consensus pattern (23 bp):
GCGCCACCGTCGCCGGCCACCGC
Found at i:60037300 original size:38 final size:39
Alignment explanation
Indices: 60037248--60037389 Score: 225
Period size: 38 Copynumber: 3.7 Consensus size: 39
60037238 GAATGTTCGA
60037248 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
60037287 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
60037325 ATGATATCCGGGCTAAG-CCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
60037363 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
60037390 CTTTGTGCGG
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
38 69 0.74
39 16 0.17
40 8 0.09
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:60045823 original size:14 final size:14
Alignment explanation
Indices: 60045804--60045831 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
60045794 TTTGGAAGTG
60045804 TATATATATACATA
1 TATATATATACATA
60045818 TATATATATACATA
1 TATATATATACATA
60045832 AGTATGCCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TATATATATACATA
Found at i:60046362 original size:27 final size:28
Alignment explanation
Indices: 60046306--60046375 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
60046296 AAATTGGTAC
60046306 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
60046334 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
60046361 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
60046376 GAATCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:60049313 original size:40 final size:42
Alignment explanation
Indices: 60049259--60049367 Score: 129
Period size: 40 Copynumber: 2.7 Consensus size: 42
60049249 TAAATCGGTA
*
60049259 TCGCACACTTAGTGCC-TTCTATAGCCGAAGCTAT-GCCAAC
1 TCGCACACTTAGTGCCATTCTATAGCCGAAGCTATAGCAAAC
** **
60049299 TCGCACACTTAGTGCCATT-TATAGTTGAAGCTATATTAAAC
1 TCGCACACTTAGTGCCATTCTATAGCCGAAGCTATAGCAAAC
*
60049340 -CGCACACTTAGTGCCAATC-ATAGCCGAA
1 TCGCACACTTAGTGCCATTCTATAGCCGAA
60049368 TATCATTATA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
40 53 0.91
41 5 0.09
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (42 bp):
TCGCACACTTAGTGCCATTCTATAGCCGAAGCTATAGCAAAC
Found at i:60060211 original size:2 final size:2
Alignment explanation
Indices: 60060198--60060230 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
60060188 TGAAAGTCGA
*
60060198 AT AT AA AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60060231 TTTGAAAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60061389 original size:38 final size:38
Alignment explanation
Indices: 60061306--60061400 Score: 111
Period size: 38 Copynumber: 2.5 Consensus size: 38
60061296 ATAGGCTATA
* * * *
60061306 TGCTGG-AATTATATCCGGGTTAAATCCCGTAGGCTTCG
1 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAAGCCTAG
60061344 TGCTGGTAATATATCCGGGTTAAATCCCGCAAGCCTAG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAAGCCTAG
* * *
60061382 TGTTGGTATTATATTCGGG
1 TGCTGGTAATATATCCGGG
60061401 CCTTTGTGCC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
38 47 0.96
39 2 0.04
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (38 bp):
TGCTGGTAATATATCCGGGTTAAATCCCGCAAGCCTAG
Found at i:60066307 original size:40 final size:39
Alignment explanation
Indices: 60066116--60066300 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 39
60066106 TCGAATGATG
* * *
60066116 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
60066156 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
60066196 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
60066236 TCCGGGTTAAGTCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
60066276 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
60066301 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.26
40 88 0.68
41 7 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60066307 original size:79 final size:79
Alignment explanation
Indices: 60066116--60066333 Score: 241
Period size: 79 Copynumber: 2.7 Consensus size: 79
60066106 TCGAATGATG
* * **
60066116 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATT
60066180 CGTGCGAGTTACTAAA
64 CGTGCGAGTTACTAAA
* *
60066196 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCA-TC
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTC
60066259 TGTGCGAGTTACTATAA
65 -GTGCGAGTTACTA-AA
* ** *
60066276 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
60066334 TACGTGATTC
Statistics
Matches: 119, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
78 9 0.08
79 65 0.55
80 37 0.31
81 8 0.07
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTCG
TGCGAGTTACTAAA
Found at i:60074276 original size:79 final size:81
Alignment explanation
Indices: 60074142--60074325 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
60074132 TCGAATGATG
*
60074142 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCAT-T
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATCT
60074205 CGTGCGAGTTACTA-AA
66 -GTGCGAGTTACTATAA
* * * **
60074221 TCCGGACTAAGATCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCGAAGGCATC
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATC
60074284 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTATAA
*
60074301 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
60074326 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 55 0.60
80 29 0.32
81 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATCT
GTGCGAGTTACTATAA
Found at i:60074332 original size:40 final size:39
Alignment explanation
Indices: 60074142--60074325 Score: 228
Period size: 40 Copynumber: 4.6 Consensus size: 39
60074132 TCGAATGATG
* * *
60074142 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
60074181 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
60074221 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
60074261 TCCGGGTTAAGTCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
60074301 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
60074326 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 44 0.34
40 79 0.61
41 6 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60074332 original size:79 final size:78
Alignment explanation
Indices: 60074188--60074358 Score: 197
Period size: 79 Copynumber: 2.2 Consensus size: 78
60074178 ATATCCGGAC
**
60074188 TAAGATCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAG-TCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG
60074253 TTA-CTAAATCCGGGT
65 -TAGCTAAATCC-GGT
* *
60074268 TAAGTCCGAAGGCA-TCTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACG
1 TAAGTCCGAAGGCATTC-GTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACG
*
60074330 AGTAGCTATATCCGGT
63 AGTAGCTAAATCCGGT
*
60074346 TAAACTCCGAAGG
1 T-AAGTCCGAAGG
60074359 TACGTGATTC
Statistics
Matches: 80, Mismatches: 6, Indels: 11
0.82 0.06 0.11
Matches are distributed among these distances:
78 9 0.11
79 65 0.81
80 6 0.08
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (78 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGT
AGCTAAATCCGGT
Found at i:60076122 original size:50 final size:50
Alignment explanation
Indices: 60076040--60076202 Score: 170
Period size: 50 Copynumber: 3.3 Consensus size: 50
60076030 CATTATGTGT
* * *
60076040 TTTGCAT--TAAATAAAGTCATGCATTATATAACTCTCATGTTAATTAAG
1 TTTGCATCATAAATTAAGCCATGCATTATGTAACTCTCATGTTAATTAAG
* * * *
60076088 TTTGCATCATAAATTATGGCATGCTTTATGTAACTCTCATGTTAGTTAAAG
1 TTTGCATCATAAATTAAGCCATGCATTATGTAACTCTCATGTTAATT-AAG
* * * *
60076139 TTTGCATAATTAAATTAAGCCATGCATTAAGTAACTCATC-TGTTCATTTAG
1 TTTGCATCA-TAAATTAAGCCATGCATTATGTAACTC-TCATGTTAATTAAG
*
60076190 TTTGCATCTTAAA
1 TTTGCATCATAAA
60076203 CCATGCATTT
Statistics
Matches: 94, Mismatches: 16, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
48 7 0.07
50 36 0.38
51 20 0.21
52 29 0.31
53 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (50 bp):
TTTGCATCATAAATTAAGCCATGCATTATGTAACTCTCATGTTAATTAAG
Found at i:60077402 original size:11 final size:11
Alignment explanation
Indices: 60077388--60077436 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 11
60077378 TCAAAATATC
60077388 AAAAAAAAGTG
1 AAAAAAAAGTG
*
60077399 -AAAAAAATTCG
1 AAAAAAAAGT-G
*
60077410 AAAAAAAAG-C
1 AAAAAAAAGTG
60077420 AAAAAAAAGT-
1 AAAAAAAAGTG
60077430 AAAAAAA
1 AAAAAAA
60077437 TTCAATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
10 24 0.75
11 1 0.03
12 7 0.22
ACGTcount: A:0.78, C:0.04, G:0.10, T:0.08
Consensus pattern (11 bp):
AAAAAAAAGTG
Found at i:60077405 original size:22 final size:22
Alignment explanation
Indices: 60077380--60077427 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
60077370 TAGAAGTTTC
**
60077380 AAAATATC-AAAAAAAAGTGAAA
1 AAAAT-TCGAAAAAAAAGCAAAA
60077402 AAAATTCGAAAAAAAAGCAAAA
1 AAAATTCGAAAAAAAAGCAAAA
60077424 AAAA
1 AAAA
60077428 GTAAAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.75, C:0.06, G:0.08, T:0.10
Consensus pattern (22 bp):
AAAATTCGAAAAAAAAGCAAAA
Found at i:60079368 original size:27 final size:26
Alignment explanation
Indices: 60079350--60079415 Score: 105
Period size: 27 Copynumber: 2.5 Consensus size: 26
60079340 ATAGTGAGTC
60079350 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGT-CTATATAATCAACT
*
60079377 CGCACACTTAGTCTATATGATCAAACT
1 CGCACACTTAGTCTATATAATC-AACT
60079404 CGCACACTTAGT
1 CGCACACTTAGT
60079416 GCTGTACAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
26 9 0.24
27 28 0.76
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (26 bp):
CGCACACTTAGTCTATATAATCAACT
Found at i:60086112 original size:40 final size:40
Alignment explanation
Indices: 60086004--60086213 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
60085994 CGGGATTTAA
* * * * *
60086004 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
60086044 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60086084 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60086124 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60086164 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60086204 CCGGATATAT
1 CCGGATATAT
60086214 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:60094243 original size:40 final size:40
Alignment explanation
Indices: 60094135--60094344 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
60094125 CGGGATTTAA
* * * * *
60094135 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
60094175 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60094215 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60094255 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60094295 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
60094335 CCGGATATAT
1 CCGGATATAT
60094345 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:60096587 original size:19 final size:19
Alignment explanation
Indices: 60096563--60096600 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
60096553 ACAGAAAGAA
60096563 GACTTAGTTTGAAAATCGT
1 GACTTAGTTTGAAAATCGT
60096582 GACTTAGTTTGAAAATCGT
1 GACTTAGTTTGAAAATCGT
60096601 TTTTGCATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.37
Consensus pattern (19 bp):
GACTTAGTTTGAAAATCGT
Found at i:60101882 original size:40 final size:39
Alignment explanation
Indices: 60101810--60102000 Score: 158
Period size: 40 Copynumber: 4.8 Consensus size: 39
60101800 CGGATATAAC
* **
60101810 GACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGT
1 GACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGT
* *
60101850 GACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGT
1 GACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGT
* *
60101890 AACTTGCACAAATGCC-TCGGG-CTTAGCCCGGATTTA-T
1 GACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGT
* * * * *
60101927 TATCTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGT
1 GA-CTCGCACAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGT
* *
60101968 CACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 GAC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
60102001 ATATCATTCG
Statistics
Matches: 122, Mismatches: 20, Indels: 18
0.76 0.12 0.11
Matches are distributed among these distances:
37 4 0.03
38 25 0.20
39 7 0.06
40 70 0.57
41 16 0.13
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (39 bp):
GACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGT
Found at i:60101940 original size:78 final size:80
Alignment explanation
Indices: 60101818--60102002 Score: 202
Period size: 78 Copynumber: 2.3 Consensus size: 80
60101808 ACGACTCGCT
** * *
60101818 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGA-CTCGCACGAATGCCTTCGGGA-CTTAACC
1 CAAA-GCCTTCGGGACTTAGCCCGGATT-TA-TTATCTCGCACGAATGCCTTC-GGATCCTAACC
* *
60101880 CGGGTTTAGTAACTT-GCA
62 CGGATATAGTAACTTAGCA
**
60101898 CAAATGCC-TCGGG-CTTAGCCCGGATTTATTATCTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGGATTTATTATCTCGCACGAATGCCTTCGGATCCTAACCCGG
*
60101961 ATATAGTCACTTAGCA
65 ATATAGTAACTTAGCA
60101977 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
60102003 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
77 5 0.06
78 46 0.51
79 19 0.21
80 20 0.22
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTTATTATCTCGCACGAATGCCTTCGGATCCTAACCCGGA
TATAGTAACTTAGCA
Found at i:60103820 original size:109 final size:109
Alignment explanation
Indices: 60103692--60104010 Score: 519
Period size: 101 Copynumber: 3.0 Consensus size: 109
60103682 GGAATTAACG
60103692 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
60103757 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
60103801 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
60103866 -TTAATATATG-T--TA-A-TATA-TT-ATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
* * *
60103902 GCTGACCAATATGCATGGATTAATGACTTGAATTGTTTATTATATTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
* * * *
60103967 TTTAATATATGTTAATATATTATGTTTAAGAAGAGAGGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
60104011 TTCATCTTTC
Statistics
Matches: 195, Mismatches: 7, Indels: 16
0.89 0.03 0.07
Matches are distributed among these distances:
101 78 0.40
102 12 0.06
103 5 0.03
104 1 0.01
105 4 0.02
106 1 0.01
107 4 0.02
108 12 0.06
109 78 0.40
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.40
Consensus pattern (109 bp):
GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
Found at i:60104265 original size:2 final size:2
Alignment explanation
Indices: 60104258--60104283 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
60104248 GAATGGAATG
60104258 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
60104284 GCATGTAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60104429 original size:28 final size:28
Alignment explanation
Indices: 60104389--60104458 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
60104379 TATGAGATTG
*
60104389 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
60104417 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
60104445 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
60104459 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:60106915 original size:200 final size:200
Alignment explanation
Indices: 60106572--60106978 Score: 640
Period size: 200 Copynumber: 2.0 Consensus size: 200
60106562 ATGTAAATGA
*
60106572 AATGGTAAGTTATGTTTTATTTTCTACGAACTTACTAAGCATTATTTCCTTACGTAGTTTCTTTC
1 AATGGTAAGTTATGTTTTATTTTCTACGAACTTACTAAGCATTATTTCCTTACATAGTTTCTTTC
* * *
60106637 CCATGTTTTATAGATTATCGGAAGCTTGACCGATTTAGAATCTCGTCAGAGATCTATCGCACTAT
66 CCATGTTTTATAGAGTATCGGAAGCTTGACCGATTTAGAATCTCATCAGAGATCTATCACACTAT
* *
60106702 CCAGCATATATATATCTA-TAGTTTTATATGTTTTGGCCAAGGTTATAATGGCATGTATAGGTGG
131 CCAACATATATATATC-AGTAGTTTTATATGTTTTGGCCAAGGTTATAATGGCATGTACAGGTGG
60106766 ACTTGT
195 ACTTGT
* *
60106772 -ATGGTAAGTTATGTTTTATTTTCTATGAACTTACTAAGCATTATTTGCTTTACATAGTTTCTTT
1 AATGGTAAGTTATGTTTTATTTTCTACGAACTTACTAAGCATTATTT-CCTTACATAGTTTCTTT
* * ** *
60106836 CCTATGTTTTATAGAGTATCGGAAGCTTGACC-ACTTTGGAATCTCATTGGAGATTTATCACACT
65 CCCATGTTTTATAGAGTATCGGAAGCTTGACCGA-TTTAGAATCTCATCAGAGATCTATCACACT
*
60106900 ATCCAACATATATATATCAGTAGTTTTTTATGTTTTGGCCAAGGTTATAATGGCATGTACAGGTG
129 ATCCAACATATATATATCAGTAGTTTTATATGTTTTGGCCAAGGTTATAATGGCATGTACAGGTG
60106965 GACTTGT
194 GACTTGT
60106972 AATGGTA
1 AATGGTA
60106979 TTTAGTTGAA
Statistics
Matches: 189, Mismatches: 14, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
199 47 0.25
200 136 0.72
201 6 0.03
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (200 bp):
AATGGTAAGTTATGTTTTATTTTCTACGAACTTACTAAGCATTATTTCCTTACATAGTTTCTTTC
CCATGTTTTATAGAGTATCGGAAGCTTGACCGATTTAGAATCTCATCAGAGATCTATCACACTAT
CCAACATATATATATCAGTAGTTTTATATGTTTTGGCCAAGGTTATAATGGCATGTACAGGTGGA
CTTGT
Found at i:60107207 original size:70 final size:70
Alignment explanation
Indices: 60107133--60107270 Score: 240
Period size: 70 Copynumber: 2.0 Consensus size: 70
60107123 AATATGATTT
* *
60107133 TGACCTAGTTATGGTATGATTTTGTAAGTATTGAATTGGTAATTGATGTTTGAAATGTGGTAGTA
1 TGACCTAGCTATGGTATGATTTGGTAAGTATTGAATTGGTAATTGATGTTTGAAATGTGGTAGTA
60107198 TATTA
66 TATTA
* *
60107203 TGACCTAGCTATGGTATGATTTGGTAAGTCTTGAATTGGTAATTGATGTTTGAAATGTTGTAGTA
1 TGACCTAGCTATGGTATGATTTGGTAAGTATTGAATTGGTAATTGATGTTTGAAATGTGGTAGTA
60107268 TAT
66 TAT
60107271 ATACGTTTAG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.28, C:0.04, G:0.25, T:0.43
Consensus pattern (70 bp):
TGACCTAGCTATGGTATGATTTGGTAAGTATTGAATTGGTAATTGATGTTTGAAATGTGGTAGTA
TATTA
Found at i:60108530 original size:34 final size:35
Alignment explanation
Indices: 60108470--60108556 Score: 88
Period size: 34 Copynumber: 2.5 Consensus size: 35
60108460 GCAGTGTAAA
* * * * *
60108470 CAGTTTGGGCCTAAACCC-TTATCGGTAGCAATAT
1 CAGTATGGGCCTTAGCCCATTATCGGTAACAATAG
*
60108504 CAGTATGGGCCTTAGCCCATTA-CGGTAACAGTAG
1 CAGTATGGGCCTTAGCCCATTATCGGTAACAATAG
* *
60108538 CAGTGTGGACCTTAGCCCA
1 CAGTATGGGCCTTAGCCCA
60108557 ATTCAGTATA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
34 41 0.93
35 3 0.07
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (35 bp):
CAGTATGGGCCTTAGCCCATTATCGGTAACAATAG
Found at i:60110052 original size:22 final size:22
Alignment explanation
Indices: 60110022--60110064 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
60110012 TCAAGAGAAG
60110022 GGGAAATAGCAAGAATCGGTCA
1 GGGAAATAGCAAGAATCGGTCA
* *
60110044 GGGAGATAGTAAGAATCGGTC
1 GGGAAATAGCAAGAATCGGTC
60110065 TAACCAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.12, G:0.35, T:0.16
Consensus pattern (22 bp):
GGGAAATAGCAAGAATCGGTCA
Found at i:60114503 original size:40 final size:39
Alignment explanation
Indices: 60114444--60114606 Score: 201
Period size: 40 Copynumber: 4.2 Consensus size: 39
60114434 TGAATGATAC
*
60114444 CCGGGCTAAG-CCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
*
60114483 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
**
60114523 CCGGGCTAAGACCCGAAGGCATTTGTG--AGT-TGCTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTTATAT
* * *
60114559 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GTTATAT
60114599 CC-GGCTAA
1 CCGGGCTAA
60114607 ATTCCGAAGA
Statistics
Matches: 108, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
36 29 0.27
37 1 0.01
38 4 0.04
39 15 0.14
40 57 0.53
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTTATAT
Found at i:60114573 original size:76 final size:77
Alignment explanation
Indices: 60114444--60114606 Score: 206
Period size: 76 Copynumber: 2.1 Consensus size: 77
60114434 TGAATGATAC
* *
60114444 CCGGGCTAAGCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTATGC-AGT-ATGATATCCGGGCTAAGACCCGAAGGCAATTGT
*
60114509 GCGAGTTGTTATAT
64 GCGAGTGGTTATAT
* * *
60114523 CCGGGCTAAGACCCGAAGGCATTTGTG-AGT-TGCTATCCGGGTTAAGACCCGAAGGCAATTGTG
1 CCGGGCTAAG-CCCGAAGGCATTTATGCAGTATGATATCCGGGCTAAGACCCGAAGGCAATTGTG
**
60114586 CTTGTGGTTATAT
65 CGAGTGGTTATAT
60114599 CC-GGCTAA
1 CCGGGCTAA
60114607 ATTCCGAAGA
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
75 6 0.08
76 41 0.55
78 3 0.04
79 10 0.13
80 15 0.20
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (77 bp):
CCGGGCTAAGCCCGAAGGCATTTATGCAGTATGATATCCGGGCTAAGACCCGAAGGCAATTGTGC
GAGTGGTTATAT
Found at i:60122539 original size:39 final size:39
Alignment explanation
Indices: 60122479--60122682 Score: 254
Period size: 39 Copynumber: 5.2 Consensus size: 39
60122469 TGAATGATAC
* * *
60122479 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
60122519 CCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
60122558 CCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* **
60122597 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TGCTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
* * **
60122635 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
60122675 CC-GGCTAA
1 CCGGGCTAA
60122683 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 13, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
38 32 0.22
39 79 0.54
40 35 0.24
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:60122613 original size:79 final size:76
Alignment explanation
Indices: 60122473--60122682 Score: 271
Period size: 79 Copynumber: 2.7 Consensus size: 76
60122463 AGCATTTGAA
* * *
60122473 TGATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCGAAGG
1 TGATATCCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCGAAGG
*
60122537 CATTTGTGCGAGT
64 CATTTGTGCAAGT
*
60122550 TGTTATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAG
1 TG--ATATCCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGA-CCGAAG
60122615 GCATTTGTGCAAGT
63 GCATTTGTGCAAGT
* * * *
60122629 TGCTATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 TGATATCCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGGGCTAA
60122683 ATTCCGAAGA
Statistics
Matches: 118, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
77 30 0.25
78 42 0.36
79 46 0.39
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (76 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCGAAGGCA
TTTGTGCAAGT
Found at i:60126681 original size:40 final size:40
Alignment explanation
Indices: 60126626--60126829 Score: 275
Period size: 40 Copynumber: 5.1 Consensus size: 40
60126616 TGAATGATAC
* * * *
60126626 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
60126666 CCGGGTTAAGACCCGAAGGCGTTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
60126706 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
60126746 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
60126786 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
60126826 CCGG
1 CCGG
60126830 CTAAATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 143 0.99
41 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:60126759 original size:80 final size:80
Alignment explanation
Indices: 60126622--60126833 Score: 311
Period size: 80 Copynumber: 2.7 Consensus size: 80
60126612 CAATTGAATG
* * * *
60126622 ATACCCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
*
60126686 GTTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
60126702 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
60126767 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
60126782 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
60126834 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
79 6 0.05
80 111 0.93
81 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:60145971 original size:56 final size:55
Alignment explanation
Indices: 60145883--60146067 Score: 192
Period size: 65 Copynumber: 3.2 Consensus size: 55
60145873 TCTCAAACAG
*
60145883 GGTCTTACTCCACACATATAAT-GGAATCACATATCGATGCCAACATATTAAACAT
1 GGTCTTACTCCACACATAT-ATCGGAATCACATATCGATGCCAACATATTAAACGT
* * *
60145938 AGTCTTACTCACACACATATATCAGAATCACATATTGGCAATATCGATGCCAACATATTAAGCGT
1 GGTCTTACTC-CACACATATATCGGAAT--C--A----C-ATATCGATGCCAACATATTAAACGT
* * *
60146003 GGTCTTACTCGCACACATATATCGGAATCACATATCAATCCCAACGTATTAAACGT
1 GGTCTTACTC-CACACATATATCGGAATCACATATCGATGCCAACATATTAAACGT
60146059 GGTCTTACT
1 GGTCTTACT
60146068 TGTACACAAA
Statistics
Matches: 108, Mismatches: 11, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
55 11 0.10
56 43 0.40
57 1 0.01
58 1 0.01
60 1 0.01
61 1 0.01
63 1 0.01
64 1 0.01
65 48 0.44
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.28
Consensus pattern (55 bp):
GGTCTTACTCCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGT
Found at i:60145990 original size:65 final size:65
Alignment explanation
Indices: 60145913--60146037 Score: 205
Period size: 65 Copynumber: 1.9 Consensus size: 65
60145903 ATGGAATCAC
60145913 ATATCGATGCCAACATATTAAACATAGTCTTACTCACACACATATATCAGAATCACATATTGGCA
1 ATATCGATGCCAACATATTAAACATAGTCTTACTCACACACATATATCAGAATCACATATTGGCA
* * * * *
60145978 ATATCGATGCCAACATATTAAGCGTGGTCTTACTCGCACACATATATCGGAATCACATAT
1 ATATCGATGCCAACATATTAAACATAGTCTTACTCACACACATATATCAGAATCACATAT
60146038 CAATCCCAAC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (65 bp):
ATATCGATGCCAACATATTAAACATAGTCTTACTCACACACATATATCAGAATCACATATTGGCA
Found at i:60147983 original size:20 final size:19
Alignment explanation
Indices: 60147950--60147995 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
60147940 GTCATTTTGT
* *
60147950 AAAATTTGTAAAATAGGTGG
1 AAAATGTGTAAAATA-ATGG
*
60147970 AAAATGTGTGAAATAATGG
1 AAAATGTGTAAAATAATGG
60147989 AAAATGT
1 AAAATGT
60147996 AGGTTGTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.48, C:0.00, G:0.24, T:0.28
Consensus pattern (19 bp):
AAAATGTGTAAAATAATGG
Found at i:60148565 original size:48 final size:48
Alignment explanation
Indices: 60148513--60148684 Score: 265
Period size: 48 Copynumber: 3.6 Consensus size: 48
60148503 TGATCCCGTA
* *
60148513 TAAGACCATGTCTAGGACATGGCATCGGCATCGTTGTGTGAGCAAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCAAGTG
* ** * *
60148561 TAAGACCATGCCTGGGACATGGCATCGGCATTATTACGTGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCAAGTG
60148609 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCCAA-TG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAG-CAAGTG
60148657 TAAGACCATGTCTGGGACATGGCATCGG
1 TAAGACCATGTCTGGGACATGGCATCGG
60148685 TGTAAGGCAT
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
48 109 0.98
49 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCAAGTG
Found at i:60151562 original size:36 final size:36
Alignment explanation
Indices: 60151504--60151636 Score: 101
Period size: 36 Copynumber: 3.7 Consensus size: 36
60151494 AATTGACGGA
* * *
60151504 TAAGACCATGGTTAGACCATGGCAAAGT-ATGGAATG
1 TAAGACCATAGTTGGACTATGGCAAAGTAAT-GAATG
* *
60151540 TAAGACCATAGTTGGGCTATGGCATCA-TAATGACATG
1 TAAGACCATAGTTGGACTATGGCA-AAGTAATGA-ATG
* ** * ***
60151577 TAAGACCATAGCTGG-CTATGGCATTGTGATTTTGTG
1 TAAGACCATAGTTGGACTATGGCAAAGT-AATGAATG
60151613 TAAGACCATAGTTGGACTATGGCA
1 TAAGACCATAGTTGGACTATGGCA
60151637 TCAAGTAAAC
Statistics
Matches: 78, Mismatches: 13, Indels: 11
0.76 0.13 0.11
Matches are distributed among these distances:
36 48 0.62
37 30 0.38
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (36 bp):
TAAGACCATAGTTGGACTATGGCAAAGTAATGAATG
Found at i:60151584 original size:37 final size:37
Alignment explanation
Indices: 60151537--60151639 Score: 118
Period size: 36 Copynumber: 2.8 Consensus size: 37
60151527 AAAGTATGGA
60151537 ATGTAAGACCATAGTTGGGCTATGGCATCATAATGAC
1 ATGTAAGACCATAGTTGGGCTATGGCATCATAATGAC
* ** * ***
60151574 ATGTAAGACCATAGCT-GGCTATGGCATTGTGATTTT
1 ATGTAAGACCATAGTTGGGCTATGGCATCATAATGAC
* *
60151610 GTGTAAGACCATAGTTGGACTATGGCATCA
1 ATGTAAGACCATAGTTGGGCTATGGCATCA
60151640 AGTAAACGAC
Statistics
Matches: 53, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
36 28 0.53
37 25 0.47
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (37 bp):
ATGTAAGACCATAGTTGGGCTATGGCATCATAATGAC
Found at i:60154628 original size:20 final size:19
Alignment explanation
Indices: 60154595--60154641 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
60154585 GTCATTTTCT
* *
60154595 AAAATTTGTAAAATAGGTGG
1 AAAATGTGTAAAATA-ATGG
*
60154615 AAAATGTGTGAAATAATGG
1 AAAATGTGTAAAATAATGG
60154634 AAAATGTG
1 AAAATGTG
60154642 GGTTGCCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.47, C:0.00, G:0.26, T:0.28
Consensus pattern (19 bp):
AAAATGTGTAAAATAATGG
Found at i:60155257 original size:48 final size:48
Alignment explanation
Indices: 60155186--60155401 Score: 317
Period size: 48 Copynumber: 4.5 Consensus size: 48
60155176 TGATCCCGTA
* *
60155186 TAAGACCATGTCTGGGATATGGCATCGGCATCGTTATGTAAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCTAGTG
* * * *
60155234 TAAGACCATGTCTAGGACATGGCATTGGCATCGTTATGTGAGCCAATG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCTAGTG
* *
60155282 TAAGACCATGTCTGGGACATGGCATTGGCATCGTTATGTGAGC-ATGTA
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCTA-GTG
* *
60155330 TAAAACCATGTCTGGGACATGGCATCGACATCGTTATGTGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCTAGTG
*
60155378 TAAGACCATGTCTAGGACATGGCA
1 TAAGACCATGTCTGGGACATGGCA
60155402 AGACCATAGC
Statistics
Matches: 151, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 1 0.01
48 149 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATCGTTATGTGAGCTAGTG
Found at i:60163331 original size:1 final size:1
Alignment explanation
Indices: 60163325--60163361 Score: 74
Period size: 1 Copynumber: 37.0 Consensus size: 1
60163315 AGCCTGGAGT
60163325 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
60163362 GACCTGTTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:60166505 original size:59 final size:58
Alignment explanation
Indices: 60166387--60166510 Score: 139
Period size: 59 Copynumber: 2.1 Consensus size: 58
60166377 CTTTTTTTTC
* *
60166387 AAAATTAATTAAATTATTTTAAAAATTGATTAAAAACTCTAAAAATTTTAAAAATATAG
1 AAAATTAATTAAATTATTTTAAAAATT-ATTAAAAAATATAAAAATTTTAAAAATATAG
*
60166446 AAAATT-ATTAAAGTTA-TTT-AAAATT-TTCAAAAAATATAAAAACTATTTAAAAGTTATAG
1 AAAATTAATTAAA-TTATTTTAAAAATTATT-AAAAAATATAAAAA-T-TTTAAAA-ATATAG
60166505 AAAATT
1 AAAATT
60166511 GTAAAAGGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
55 2 0.04
56 12 0.21
57 7 0.12
58 16 0.28
59 20 0.35
ACGTcount: A:0.56, C:0.03, G:0.04, T:0.37
Consensus pattern (58 bp):
AAAATTAATTAAATTATTTTAAAAATTATTAAAAAATATAAAAATTTTAAAAATATAG
Found at i:60166508 original size:29 final size:27
Alignment explanation
Indices: 60166426--60166509 Score: 71
Period size: 29 Copynumber: 3.0 Consensus size: 27
60166416 TTAAAAACTC
*
60166426 TAAAAAT-TTTAAAAATATAGAAAATTA
1 TAAAAATATTTAAAATTATAGAAAA-TA
** * *
60166453 TTAAAGTTATTTAAAATTTTCAAAAAATA
1 -TAAAAATATTTAAAATTAT-AGAAAATA
60166482 TAAAAACTATTTAAAAGTTATAGAAAAT
1 TAAAAA-TATTTAAAA-TTATAGAAAAT
60166510 TGTAAAAGGC
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
28 9 0.21
29 26 0.60
30 8 0.19
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (27 bp):
TAAAAATATTTAAAATTATAGAAAATA
Found at i:60168324 original size:18 final size:20
Alignment explanation
Indices: 60168296--60168333 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
60168286 TAAAAATTGG
60168296 TAAATAATA-TTTTAGAAAA
1 TAAATAATATTTTTAGAAAA
60168315 TAAA-AATATTTTTAGAAAA
1 TAAATAATATTTTTAGAAAA
60168334 ATTAATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
TAAATAATATTTTTAGAAAA
Found at i:60171283 original size:49 final size:49
Alignment explanation
Indices: 60171215--60171441 Score: 249
Period size: 49 Copynumber: 4.6 Consensus size: 49
60171205 TCTATTGTGA
60171215 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
* * ** * * *
60171264 GGTCGCATGTGTAGTACTAAGTGCAGGCTATTTTGCGTACCTGATAATTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGAT--TATT
* * * * * * **
60171315 GATCACGTGTGTAGTATTAAGTGTAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
* *
60171364 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
* *
60171414 GGTCGCATGTGTAGTATTAA-TGCAGGCT
1 GGTCACATGTGTAGTACTAAGTGCAGGCT
60171442 CCTATGCGTA
Statistics
Matches: 145, Mismatches: 30, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
48 8 0.06
49 58 0.40
50 42 0.29
51 37 0.26
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.33
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATT
Found at i:60171411 original size:101 final size:100
Alignment explanation
Indices: 60171217--60171441 Score: 267
Period size: 100 Copynumber: 2.3 Consensus size: 100
60171207 TATTGTGAGG
* * *
60171217 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACT
* ** *
60171282 AAGTGCAGGCTATTTTGCGTACCTGATAATTTTGA
66 AAGTGCAGGCTACTACGCGTACCGGATAATTTTGA
* * * * * *
60171317 TCACGTGTGTAGTATTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATT-GGTCACATGTGTAGTAC
* *
60171382 TAAGTGCAGGCTACTACGTGTACCGGATAA--TTGG
65 TAAGTGCAGGCTACTACGCGTACCGGATAATTTTGA
* *
60171416 TCGCATGTGTAGTATTAA-TGCAGGCT
1 TCACATGTGTAGTACTAAGTGCAGGCT
60171442 CCTATGCGTA
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
98 7 0.07
99 19 0.18
100 40 0.38
101 40 0.38
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCGGATAATTTTGA
Found at i:60174688 original size:21 final size:21
Alignment explanation
Indices: 60174655--60174694 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
60174645 TAAAATCCCT
60174655 CCTCAAATCACTCAAATTCATC
1 CCTCAAATCACTC-AATTCATC
*
60174677 CCTCAACT-ACTCAATTCA
1 CCTCAAATCACTCAATTCA
60174695 AATTCCTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 4 0.24
22 7 0.41
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.28
Consensus pattern (21 bp):
CCTCAAATCACTCAATTCATC
Found at i:60176818 original size:20 final size:20
Alignment explanation
Indices: 60176793--60176838 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
60176783 GATGGAAAGT
60176793 CGCTTCAGTGGCTAATGTAA
1 CGCTTCAGTGGCTAATGTAA
60176813 CGCTTCAGTGGCTAATGTAA
1 CGCTTCAGTGGCTAATGTAA
*
60176833 TGCTTC
1 CGCTTC
60176839 GAATTTGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.33
Consensus pattern (20 bp):
CGCTTCAGTGGCTAATGTAA
Found at i:60180907 original size:27 final size:28
Alignment explanation
Indices: 60180877--60180976 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
60180867 ATAGTGAGTC
60180877 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
60180904 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
60180932 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
60180963 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60180977 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:60181836 original size:7 final size:7
Alignment explanation
Indices: 60181826--60181850 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60181816 TCATCACCAC
60181826 AACATCA
1 AACATCA
60181833 AACATCA
1 AACATCA
60181840 AACATCA
1 AACATCA
60181847 AACA
1 AACA
60181851 AGATGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:60184459 original size:52 final size:53
Alignment explanation
Indices: 60184395--60184600 Score: 184
Period size: 52 Copynumber: 3.8 Consensus size: 53
60184385 TTCCTTTTTA
* **
60184395 AACTTACCATTGCCATTTCTTGACATGGTCTTACCTGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACCTGGTATCCTTGCCTTATG
* * * * * *
60184448 AACTCA-CATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACCTGGTATCCTTGCCTTAT-G
** * * * * *
60184501 TAGTTTATCAATGCCATGTCTTGACATGGTCTT-CCATGATTTCCTTGACTCGTA-G
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACC-TGGTATCCTTG-C-CTTATG
* *
60184556 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACCTGGTATCCTT
60184601 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 27, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
52 39 0.33
53 6 0.05
54 39 0.33
55 31 0.26
56 1 0.01
57 3 0.03
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACCTGGTATCCTTGCCTTATG
Found at i:60187471 original size:26 final size:27
Alignment explanation
Indices: 60187419--60187471 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
60187409 TGCCTCAAGC
* *
60187419 TCAAATCTTTTTGAGTCATCAAGTATT
1 TCAAATCTTTTTGAGTCAGCAAATATT
60187446 TCAAA-CTTTTATGA-TCAGCAAATATT
1 TCAAATCTTTT-TGAGTCAGCAAATATT
60187472 CGGTACTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.34, C:0.15, G:0.09, T:0.42
Consensus pattern (27 bp):
TCAAATCTTTTTGAGTCAGCAAATATT
Found at i:60191236 original size:38 final size:38
Alignment explanation
Indices: 60191184--60191345 Score: 200
Period size: 38 Copynumber: 4.2 Consensus size: 38
60191174 GCAAGCTATA
* * *
60191184 TGCTGGAATAATATCCGGGTTAAATCCTGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
60191222 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
60191260 TGCTGGTATTATATCCGGGTTAAAGTCCCGCAGG-TCTAG
1 TGCTGGTATTATATCCGGGTTAAA-TCCCGCAGGCT-TCG
* ** * *
60191299 TGCTGGTATTATATCTGAACTTAAAGTCCCGCAGGTTTTG
1 TGCTGGTATTATATCCG-GGTTAAA-TCCCGCAGGCTTCG
60191339 TGCTGGT
1 TGCTGGT
60191346 GACTAGATTC
Statistics
Matches: 112, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
38 60 0.54
39 27 0.24
40 24 0.21
41 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:60191302 original size:39 final size:38
Alignment explanation
Indices: 60191155--60191333 Score: 191
Period size: 38 Copynumber: 4.6 Consensus size: 38
60191145 ATTTGATGTG
* * * * *
60191155 TATCCGGGCTTAAAGACCCGCAAGCTATATGCTGGAATAA
1 TATCCGGG-TTAAAGTCCCGCAGGCTA-GTGCTGGTATTA
* *
60191195 TATCCGGGTTAAA-TCCTGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAAGTCCCGCAGGC-TAGTGCTGGTATTA
*
60191233 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAAGTCCCGCAGGC-TAGTGCTGGTATTA
60191271 TATCCGGGTTAAAGTCCCGCAGGTCTAGTGCTGGTATTA
1 TATCCGGGTTAAAGTCCCGCAGG-CTAGTGCTGGTATTA
* **
60191310 TATCTGAACTTAAAGTCCCGCAGG
1 TATCCG-GGTTAAAGTCCCGCAGG
60191334 TTTTGTGCTG
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
38 66 0.54
39 33 0.27
40 24 0.20
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.29
Consensus pattern (38 bp):
TATCCGGGTTAAAGTCCCGCAGGCTAGTGCTGGTATTA
Found at i:60191313 original size:77 final size:78
Alignment explanation
Indices: 60191184--60191345 Score: 204
Period size: 77 Copynumber: 2.1 Consensus size: 78
60191174 GCAAGCTATA
* * * **
60191184 TGCTGGAATAATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATCCG-GGTTAAA-T
1 TGCTGGTATAATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTATATCCGAACTTAAAGT
60191247 CCCGCAGGCTTCG
66 CCCGCAGGCTTCG
* *
60191260 TGCTGGTATTATATCCGGGTTAAAGTCCCGCAGG-TCTAGTGCTGGTATTATATCTGAACTTAAA
1 TGCTGGTATAATATCCGGGTTAAA-TCCCGCAGGCT-TAGTGCTGGTATTATATCCGAACTTAAA
* *
60191324 GTCCCGCAGGTTTTG
64 GTCCCGCAGGCTTCG
60191339 TGCTGGT
1 TGCTGGT
60191346 GACTAGATTC
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
76 23 0.32
77 26 0.36
78 5 0.07
79 19 0.26
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (78 bp):
TGCTGGTATAATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTATATCCGAACTTAAAGT
CCCGCAGGCTTCG
Found at i:60194207 original size:40 final size:40
Alignment explanation
Indices: 60194048--60194225 Score: 173
Period size: 40 Copynumber: 4.5 Consensus size: 40
60194038 GAGTCACGTA
* * * *
60194048 CCTTCGGGAT-TTAA-CCGAATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATCACTAGCACAAATG
* * * * *
60194087 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATCACTAGCACAAATG
* *
60194127 CCTTCGGGTCTTAACCCGGATATAA-CAACTCGCACGAATG
1 CCTTCGGGTCTTAACCCGGATATAATC-ACTAGCACAAATG
* *
60194167 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATCACTAGCACAAATG
* * *
60194207 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
60194226 GTATCATTCA
Statistics
Matches: 116, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 102 0.88
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATCACTAGCACAAATG
Found at i:60198573 original size:55 final size:54
Alignment explanation
Indices: 60198418--60198624 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
60198408 TTCCTTTTTA
* * * *
60198418 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
60198471 AACTTACCATTGGCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** ** * * * *
60198525 TAGTTTATTAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
60198580 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
60198625 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 29, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 45 0.37
54 37 0.30
55 41 0.33
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:60202919 original size:40 final size:40
Alignment explanation
Indices: 60202838--60202922 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
60202828 TTTATTGCGT
* * * *
60202838 TACTGTTACTGTTACTATATTGGGCTAAGGCCCAGACTGA
1 TACTGATACTGATACTATAATGGGCTAAGGCCCAGAATGA
* *
60202878 TACTGATACTGATACTGTAATGGGCTATGGCCCTA-AATGA
1 TACTGATACTGATACTATAATGGGCTAAGGCCC-AGAATGA
60202918 TACTG
1 TACTG
60202923 GACTGTCACT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 37 0.97
41 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (40 bp):
TACTGATACTGATACTATAATGGGCTAAGGCCCAGAATGA
Found at i:60207278 original size:12 final size:12
Alignment explanation
Indices: 60207261--60207287 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
60207251 ATCGACTTTG
60207261 TGAGTAAATGCC
1 TGAGTAAATGCC
60207273 TGAGTAAATGCC
1 TGAGTAAATGCC
60207285 TGA
1 TGA
60207288 CTTGCCAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (12 bp):
TGAGTAAATGCC
Found at i:60211360 original size:16 final size:16
Alignment explanation
Indices: 60211341--60211375 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
60211331 GCAAAAGTCG
60211341 AAATGCTGAAAAGCTA
1 AAATGCTGAAAAGCTA
60211357 AAATGCTGAAAAGCTA
1 AAATGCTGAAAAGCTA
60211373 AAA
1 AAA
60211376 GTTTGACTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.11, G:0.17, T:0.17
Consensus pattern (16 bp):
AAATGCTGAAAAGCTA
Found at i:60211640 original size:28 final size:29
Alignment explanation
Indices: 60211587--60211647 Score: 99
Period size: 28 Copynumber: 2.1 Consensus size: 29
60211577 TGAGCATGAC
60211587 TATAAATGTGAATTGGGCCTGATGGGCCA
1 TATAAATGTGAATTGGGCCTGATGGGCCA
60211616 TATAAATGTG-ATTGGGCCT-AGTGGGCCA
1 TATAAATGTGAATTGGGCCTGA-TGGGCCA
60211644 TATA
1 TATA
60211648 CAGGTATGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
27 1 0.03
28 20 0.65
29 10 0.32
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (29 bp):
TATAAATGTGAATTGGGCCTGATGGGCCA
Found at i:60212998 original size:22 final size:23
Alignment explanation
Indices: 60212973--60213015 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
60212963 TATCCCCAAA
* *
60212973 TGGAGTGTAG-GGCTGGATGGAG
1 TGGACTGTAGAGGATGGATGGAG
60212995 TGGACTGTAGAGGATGGATGG
1 TGGACTGTAGAGGATGGATGG
60213016 GTAGGATTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.21, C:0.05, G:0.51, T:0.23
Consensus pattern (23 bp):
TGGACTGTAGAGGATGGATGGAG
Found at i:60214400 original size:34 final size:34
Alignment explanation
Indices: 60214362--60214426 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
60214352 GTATCAGCTA
*
60214362 GGGCCTTAGCCCAATACAGTATCAGTAACAGTGT
1 GGGCCTTAGCCCAATACAGTAACAGTAACAGTGT
*
60214396 GGGCCTTAGCCCAATTCAGTAACAGTAACAG
1 GGGCCTTAGCCCAATACAGTAACAGTAACAG
60214427 ATGTCATCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.22
Consensus pattern (34 bp):
GGGCCTTAGCCCAATACAGTAACAGTAACAGTGT
Found at i:60225057 original size:42 final size:43
Alignment explanation
Indices: 60224974--60225138 Score: 157
Period size: 42 Copynumber: 3.9 Consensus size: 43
60224964 AATCATACCA
* * * * * *
60224974 ATGCCATATCCTAGA-TATGGTCTTACATGGAGTCTCGTATCG
1 ATGCCATAGCCCAGACTATGGTCTTACACGAAATCTCATATCG
*
60225016 ATGCCAATAGCCCA-ACTATGGTCTTACAC-AATTCTCATATCG
1 ATGCC-ATAGCCCAGACTATGGTCTTACACGAAATCTCATATCG
60225058 ATGCCAT-GTCCCAGAC-ATGGTCTTACACGAAATCTCATAAT-G
1 ATGCCATAG-CCCAGACTATGGTCTTACACGAAATCTCAT-ATCG
* *
60225100 ATACCATATCCCAGA-TATGGTCTTACACGTAAA-CTCATA
1 ATGCCATAGCCCAGACTATGGTCTTACACG-AAATCTCATA
60225139 ACCCTAATGT
Statistics
Matches: 105, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
40 1 0.01
41 19 0.18
42 62 0.59
43 23 0.22
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGCCATAGCCCAGACTATGGTCTTACACGAAATCTCATATCG
Found at i:60226772 original size:18 final size:18
Alignment explanation
Indices: 60226751--60226786 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
60226741 CTTTTCGGAG
60226751 ATAAAAATAATTTCAGAT
1 ATAAAAATAATTTCAGAT
*
60226769 ATAAAAATAATTTTAGAT
1 ATAAAAATAATTTCAGAT
60226787 GCAAAATCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.36
Consensus pattern (18 bp):
ATAAAAATAATTTCAGAT
Found at i:60226792 original size:18 final size:18
Alignment explanation
Indices: 60226753--60226792 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
60226743 TTTCGGAGAT
*
60226753 AAAAATAATTTCAGATAT
1 AAAAATAATTTCAGATAC
* *
60226771 AAAAATAATTTTAGATGC
1 AAAAATAATTTCAGATAC
60226789 AAAA
1 AAAA
60226793 TCTATAGTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.30
Consensus pattern (18 bp):
AAAAATAATTTCAGATAC
Found at i:60232530 original size:40 final size:40
Alignment explanation
Indices: 60232445--60232595 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
60232435 AATTGAATGA
* * *
60232445 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
60232485 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
60232526 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
60232565 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
60232596 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:60232609 original size:40 final size:40
Alignment explanation
Indices: 60232482--60232611 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
60232472 ATGCTGGAAA
* * * *
60232482 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
60232522 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
60232562 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
60232602 TTATATCCGG
1 TTATATCCGG
60232612 TTATGTTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:60236241 original size:6 final size:6
Alignment explanation
Indices: 60236226--60236268 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
60236216 ATTAAGTCAA
* * *
60236226 TTTA-T TTTATT TTTATT TCTATT TTTATG TTTATT GTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
60236269 CTTAGACTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:60236250 original size:12 final size:11
Alignment explanation
Indices: 60236226--60236268 Score: 59
Period size: 12 Copynumber: 3.7 Consensus size: 11
60236216 ATTAAGTCAA
60236226 TTTATTTTATT
1 TTTATTTTATT
60236237 TTTATTTCTATT
1 TTTATTT-TATT
60236249 TTTATGTTTATT
1 TTTAT-TTTATT
*
60236261 GTTATTTT
1 TTTATTTT
60236269 CTTAGACTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 10 0.34
12 17 0.59
13 2 0.07
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:60238932 original size:20 final size:20
Alignment explanation
Indices: 60238903--60238947 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
60238893 AGCACATGTA
* *
60238903 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
60238923 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
60238943 TTCAT
1 TTCAT
60238948 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:60243829 original size:40 final size:40
Alignment explanation
Indices: 60243784--60243951 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
60243774 CGGAATACAA
60243784 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
60243824 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
60243864 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * ** * *
60243904 CCGGATATAATTTCCAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
60243944 CCGGATAT
1 CCGGATAT
60243952 CATTCAATTG
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 3 0.03
40 102 0.95
41 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:60246922 original size:42 final size:42
Alignment explanation
Indices: 60246769--60246933 Score: 174
Period size: 42 Copynumber: 3.9 Consensus size: 42
60246759 AATCATACCA
* *** *
60246769 ATGCCATATCCTAGATATGGTCTTACATGGAGTCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* * * *
60246811 ATGCCAATAGCCCAGCTATGGTCTTACAC-GATTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* *
60246853 ATGCCATGTCCCAGACATGGTCTTACACAAAATCTCATAAT-G
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCAT-ATCG
*
60246895 ATACCATATCCCAGATATGGTCTTACACATAAA-CTCATA
1 ATGCCATATCCCAGATATGGTCTTACACA-AAATCTCATA
60246934 ACCCTAATGT
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
41 20 0.19
42 61 0.58
43 24 0.23
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
Found at i:60260397 original size:40 final size:40
Alignment explanation
Indices: 60260351--60260575 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 40
60260341 CTTGCACAAG
* * * * *
60260351 GCCTTCGGGTCTTAGCTCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
*
60260391 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
60260431 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
60260471 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-GCT-AGCACAAAT
* * * * *
60260511 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-GCTAGCACAAAT
*
60260552 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
60260576 CATTCGAATA
Statistics
Matches: 158, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.01
40 127 0.80
41 30 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:60260446 original size:80 final size:80
Alignment explanation
Indices: 60260315--60260575 Score: 280
Period size: 80 Copynumber: 3.3 Consensus size: 80
60260305 CTCAAGTAAT
* * * ** * * *
60260315 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCTCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCTCGGATATAGT
*
60260378 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
60260393 CTTCGGGACTTAGCCCGGATATAGTC-GCT-AGCACAAATGCCTTCGGGTTTTAGCCCGGATATA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCA-CACAAATGCCTTCGGGTCTTAGCTCGGATATA
* *
60260456 ATCGCTAGCACAAATGC
64 GTCACTAGCACAAATGC
* * * *
60260473 CTTCGGGTCTTAGCCCGGATATAGCAACTCACACGAATGCCTTCGGATCTTAG-TCCGGTTATAG
1 CTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCT-CGGATATAG
*
60260537 TCACCTAGCACAAAAGC
65 TCA-CTAGCACAAATGC
60260554 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
60260576 CATTCGAATA
Statistics
Matches: 152, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 91 0.60
81 34 0.22
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCACACAAATGCCTTCGGGTCTTAGCTCGGATATAGT
CACTAGCACAAATGC
Found at i:60260536 original size:120 final size:120
Alignment explanation
Indices: 60260315--60260575 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
60260305 CTCAAGTAAT
* * * *
60260315 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCTCGGATGTGGTC
1 CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
* * *
60260379 ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGC
66 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* * *
60260433 CTTCGGGTTTTAGCCCGGATATAA-TCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGATTTAGCCCGGATATAACT-ACTAGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATAG
* * *
60260497 -CAACTCA-CACGAATGCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
64 TC-ACT-AGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTCACCTAGCACAAAAGC
*
60260554 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGATTTAGCCCGGATAT
60260576 CATTCGAATA
Statistics
Matches: 121, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
118 13 0.11
119 20 0.17
120 55 0.45
121 33 0.27
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (120 bp):
CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
Found at i:60266080 original size:40 final size:40
Alignment explanation
Indices: 60266025--60266205 Score: 240
Period size: 40 Copynumber: 4.5 Consensus size: 40
60266015 CATTTGAATG
60266025 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
60266065 ATATCCAGGCTAAGACCTGAAGGCATTTGTGCGAGTTGTT
1 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * *
60266105 ATAACCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * * *
60266145 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
60266185 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCAGGCTAAGA-CCCGAAG
60266206 AAACTTGGGT
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.10
40 112 0.90
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:60273652 original size:42 final size:43
Alignment explanation
Indices: 60273546--60273657 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 43
60273536 CAATATGTGT
* *
60273546 TTTCGTGTAAGACCATGTCTGGGACGTTAGCATCGACTTATGA
1 TTTCGTGTAAGACCATGTCTGGGACATGAGCATCGACTTATGA
60273589 TTTACGTGTAAGACCATGTCTGGGACATCGA-CATCGTA-TT-TGA
1 TTT-CGTGTAAGACCATGTCTGGGACAT-GAGCATCG-ACTTATGA
*
60273632 TTTCGTGTAAGACCCTGTCTGGGACA
1 TTTCGTGTAAGACCATGTCTGGGACA
60273658 GTGGCATTGA
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
42 22 0.35
43 9 0.14
44 30 0.48
45 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (43 bp):
TTTCGTGTAAGACCATGTCTGGGACATGAGCATCGACTTATGA
Found at i:60278338 original size:40 final size:39
Alignment explanation
Indices: 60278293--60278500 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
60278283 CGGAATACAA
*
60278293 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
60278333 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
60278373 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
60278413 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
60278453 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
60278493 CCGGATAT
1 CCGGATAT
60278501 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:60278433 original size:80 final size:80
Alignment explanation
Indices: 60278293--60278499 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
60278283 CGGAATACAA
* * *
60278293 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
60278357 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
60278373 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
60278437 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
60278453 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
60278500 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:60286385 original size:40 final size:39
Alignment explanation
Indices: 60286340--60286547 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
60286330 CGGAATACAA
*
60286340 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
60286380 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
60286420 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
60286460 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
60286500 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
60286540 CCGGATAT
1 CCGGATAT
60286548 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:60286480 original size:80 final size:80
Alignment explanation
Indices: 60286340--60286546 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
60286330 CGGAATACAA
* * *
60286340 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
60286404 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
60286420 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
60286484 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
60286500 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
60286547 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:60291775 original size:40 final size:40
Alignment explanation
Indices: 60291729--60291953 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
60291719 CTTGCACAAG
* * *
60291729 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
60291769 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
60291809 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
60291849 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
60291889 GCCTTCAGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
60291930 GCCTTCAGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
60291954 CATTCGAATA
Statistics
Matches: 158, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.81
41 29 0.18
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:60291824 original size:80 final size:79
Alignment explanation
Indices: 60291693--60291953 Score: 301
Period size: 80 Copynumber: 3.3 Consensus size: 79
60291683 CTCAAGTAAT
* * * * * * *
60291693 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATGTGGTC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAGTC
*
60291757 ACTAGCATAAATGC
66 ACTAGCACAAATGC
* *
60291771 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAG
*
60291835 TCGCTAGCACAAATGC
64 TCACTAGCACAAATGC
* * * * * *
60291851 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCAGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCAC-AATGCCTTCGGGTCTTAGCCCGGATATAGT
*
60291916 CACCTAGCACAAAAGC
65 CA-CTAGCACAAATGC
*
60291932 CTTCAGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
60291954 CATTCGAATA
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 12 0.08
79 17 0.11
80 94 0.61
81 32 0.21
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAATGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:60291914 original size:120 final size:120
Alignment explanation
Indices: 60291693--60291953 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 120
60291683 CTCAAGTAAT
* * *
60291693 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATGTGGTC
1 CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
* * *
60291757 ACTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCA-CTAGCACAAATGC
66 ACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* * *
60291811 CTTCGGGTTTTAGCCCGGATATAA-TCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGATTTAGCCCGGATATAACT-ACTAGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATAG
* * * *
60291875 -CAACTCGCACGAATGCCTTC-AGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
64 TC-ACTAGCACAAATGCCTTCGAGA-CTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* *
60291932 CTTCAGGACTTAGCCCGGATAT
1 CTTCGGGATTTAGCCCGGATAT
60291954 CATTCGAATA
Statistics
Matches: 121, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
118 13 0.11
119 19 0.16
120 58 0.48
121 31 0.26
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (120 bp):
CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
Found at i:60295572 original size:40 final size:40
Alignment explanation
Indices: 60295514--60295840 Score: 399
Period size: 40 Copynumber: 8.1 Consensus size: 40
60295504 GCCGATGATC
*
60295514 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTATATT
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATT
* * * * *
60295554 CGGGCTAAGTCACAAAGAGCATACGTACTGGTGTTATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATT
* *
60295594 CGGGCTAAGTCCCGAAGAGCATACCTGCTGGTGTTATA-T
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATT
* *
60295633 CTGGGCTAAGTCTCGGAGAGCATTCGTGCTGGTGTTATA-T
1 C-GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATT
* *
60295673 CTGGGCTAAGTCCCGAAGACCATTCGTGCTGGTGTTATATC
1 C-GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATT
* *
60295714 CGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTATA-T
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATT
* * *
60295753 CAGGGTTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATATC
1 C-GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATT
* * * *
60295794 CGGTCTAGGTCCCGAAGAGCATTCATGCTGGTGATGTGTATT
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T-TATATT
60295836 CGGGC
1 CGGGC
60295841 CTTCGTGCCA
Statistics
Matches: 247, Mismatches: 34, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
39 2 0.01
40 234 0.95
41 3 0.01
42 8 0.03
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATT
Found at i:60295730 original size:120 final size:120
Alignment explanation
Indices: 60295515--60295826 Score: 446
Period size: 120 Copynumber: 2.6 Consensus size: 120
60295505 CCGATGATCC
* * * * *
60295515 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTATAT-TCGGGCTAAGTCACAAAGAGCATACG
1 GGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATATCT-GGGCTAAGTCCCGAAGAGCATTCG
* * *
60295579 TACTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATACCTGCTGGTGTTATATCT
65 TGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATACCTGCTGGAGTTATATCA
* *
60295635 GGGCTAAGTCTCGGAGAGCATTCGTGCTGGTGTTATATCTGGGCTAAGTCCCGAAGACCATTCGT
1 GGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATATCTGGGCTAAGTCCCGAAGAGCATTCGT
* * *
60295700 GCTGGTGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTATATCA
66 GCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATACCTGCTGGAGTTATATCA
* * * * *
60295755 GGGTTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATATCCGGTCTAGGTCCCGAAGAGCATTCAT
1 GGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATATCTGGGCTAAGTCCCGAAGAGCATTCGT
60295820 GCTGGTG
66 GCTGGTG
60295827 ATGTGTATTC
Statistics
Matches: 171, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
120 170 0.99
121 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (120 bp):
GGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATATCTGGGCTAAGTCCCGAAGAGCATTCGT
GCTGGTGTTATATCCGGGCTAAGTCCCGAAGAGCATACCTGCTGGAGTTATATCA
Found at i:60296024 original size:25 final size:25
Alignment explanation
Indices: 60295974--60296024 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
60295964 TGTGTAACAA
*
60295974 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGGGGCACTATGAGTG
*
60295999 CAAATGATTAGGGGCACTGA-GAGTG
1 CAAATGAATAGGGGCACT-ATGAGTG
60296024 C
1 C
60296025 GAGTTCTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.31, C:0.14, G:0.33, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGGGGCACTATGAGTG
Found at i:60299700 original size:40 final size:40
Alignment explanation
Indices: 60299654--60299877 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
60299644 CTTGCACAAG
*** *
60299654 GCCTTCGGGTCTTAGCCCGGATGCGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
60299694 GCCTTCGAGACTTAGCCCGGATATAGTCGCTAGCA-AAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
60299733 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
60299773 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
60299813 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
60299854 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
60299878 CATTCGAATA
Statistics
Matches: 155, Mismatches: 25, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 36 0.23
40 90 0.58
41 29 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:60299748 original size:79 final size:80
Alignment explanation
Indices: 60299618--60299877 Score: 285
Period size: 79 Copynumber: 3.3 Consensus size: 80
60299608 CTCAAGTAAT
* * * * * ***
60299618 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGCGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
60299681 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
60299696 CTTCGAGACTTAGCCCGGATATAGTC-GCTAGCA-AAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
60299759 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
60299775 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
60299840 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
60299856 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
60299878 CATTCGAATA
Statistics
Matches: 150, Mismatches: 26, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
78 12 0.08
79 78 0.52
80 27 0.18
81 33 0.22
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:60299827 original size:119 final size:120
Alignment explanation
Indices: 60299618--60299877 Score: 307
Period size: 119 Copynumber: 2.2 Consensus size: 120
60299608 CTCAAGTAAT
* * *
60299618 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATGCGGTC
1 CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATACAGTC
* * *
60299682 ACTAGCATAAATGCCTTCGAGACTTAGCCCGGATATAGTC-GCTAGCA-AAATGC
66 ACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* * * *
60299735 CTTCGGGTTTTAGCCCGGATATAA-TCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGATTTAGCCCGGATATAACT-ACTAGCAC-AAGGCCTTCGGGTCTTAGCCCGGATACAG
* * * *
60299799 -CAACTCGCACGAATGCCTTCG-GATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
64 TC-ACTAGCACAAATGCCTTCGAGA-CTTAGCCCGGATATAGTCACCTAGCACAAAAGC
*
60299856 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGATTTAGCCCGGATAT
60299878 CATTCGAATA
Statistics
Matches: 120, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
117 13 0.11
118 19 0.16
119 57 0.47
120 6 0.05
121 25 0.21
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (120 bp):
CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCGGATACAGTC
ACTAGCACAAATGCCTTCGAGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
Found at i:60301677 original size:2 final size:2
Alignment explanation
Indices: 60301670--60301695 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
60301660 GTTTGGATGA
60301670 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
60301696 GCATTCGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60302938 original size:47 final size:47
Alignment explanation
Indices: 60302863--60303013 Score: 164
Period size: 47 Copynumber: 3.3 Consensus size: 47
60302853 AGCTTAAGAT
* *
60302863 CGAATGGCCAATGTGATGAATGTAAAAGTGTGTATATGTGATAAGGT
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
* * ** *
60302910 TGAATGGGCAATGTGATGAATGTGAAAGTGCATACATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
** * *
60302957 CGAATGGTTAATGTGAT-ATATGTGTAA--GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGTGTATATGTGATAAGGC
*
60303002 CGAATGACCAAT
1 CGAATGGCCAAT
60303014 TGTGTAAAGT
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
45 23 0.27
46 1 0.01
47 61 0.72
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
Found at i:60306548 original size:93 final size:93
Alignment explanation
Indices: 60306436--60306607 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
60306426 GCCCATAAGT
* *
60306436 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCAA
60306501 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
60306529 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCAA
60306594 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
60306608 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:60306603 original size:46 final size:46
Alignment explanation
Indices: 60306428--60306603 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
60306418 TGTAACCCGC
* * * *
60306428 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
60306474 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
60306524 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
60306567 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
60306604 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 31 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:60308529 original size:40 final size:40
Alignment explanation
Indices: 60308474--60308709 Score: 346
Period size: 40 Copynumber: 5.9 Consensus size: 40
60308464 CTCGCCGATG
* *
60308474 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGCTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
60308514 ATCCGGGCTAAGTCCCAAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * * *
60308554 ATCCGGGCTAAGTCCCAAATACCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
60308594 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGTTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
60308634 ATCTGGGCTTAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
60308674 ATCCGGGCTAGGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
60308710 ATGTGTATTC
Statistics
Matches: 176, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 176 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:60312488 original size:47 final size:47
Alignment explanation
Indices: 60312419--60312569 Score: 182
Period size: 47 Copynumber: 3.3 Consensus size: 47
60312409 AGCTTAAGAT
60312419 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
* ** *
60312466 CGAATGGGCAATGTGATGAATGTGAAAGTGCATACATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
*** * *
60312513 CGAATGGTTTATGTGAT-ATATGTGTAA--GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGTGTGTATATGTGATAAGGC
*
60312558 CGAATGACCAAT
1 CGAATGGCCAAT
60312570 TGTGTAAAGT
Statistics
Matches: 87, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
45 22 0.25
46 1 0.01
47 64 0.74
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
Done.