Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 198 of 425
Found at i:60317877 original size:44 final size:43
Alignment explanation
Indices: 60317814--60317972 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
60317804 TATGTGTTTT
60317814 CGTGTAAGACCATGTCTGGGACGTTGGCATC-AACTTATGATTTA
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGAA-TT-TGATTTA
* * * *
60317858 CGTGTAAGAACATGTCTGGGACATCGGCATCGTATTTGATTT-
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCGAATTTGATTTA
* * *
60317900 CTTGTAAGACCCTGTCTGGGATAG-TGGCATCGATATTTGA-TTA
1 CGTGTAAGACCATGTCTGGGA-CGTTGGCATCGA-ATTTGATTTA
* * *
60317943 CATGTAAGACCACGTCTAGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACGTTGGCAT
60317973 TGTATGAGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 28 0.30
43 35 0.37
44 30 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACGTTGGCATCGAATTTGATTTA
Found at i:60327226 original size:20 final size:20
Alignment explanation
Indices: 60327201--60327240 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
60327191 CAGTATAAAA
60327201 CATGGAAAAGTAAACAGAGT
1 CATGGAAAAGTAAACAGAGT
60327221 CATGGAAAAGTAAACAGAGT
1 CATGGAAAAGTAAACAGAGT
60327241 AAGCTATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.25, T:0.15
Consensus pattern (20 bp):
CATGGAAAAGTAAACAGAGT
Found at i:60331116 original size:51 final size:50
Alignment explanation
Indices: 60330974--60331125 Score: 191
Period size: 50 Copynumber: 3.0 Consensus size: 50
60330964 TATGTAGCCA
60330974 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCT
* * * *
60331024 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TT
1 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCT
* * * *
60331073 GAAGTTAT-TGGGTACGCATAGTAGCCCGCACTTAGTACTACACATGCGACCT
1 -AA-CTATCT-GGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCT
60331125 A
1 A
60331126 GCTACATATA
Statistics
Matches: 86, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
49 1 0.01
50 47 0.55
51 37 0.43
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCT
Found at i:60331256 original size:68 final size:64
Alignment explanation
Indices: 60331100--60331271 Score: 193
Period size: 68 Copynumber: 2.6 Consensus size: 64
60331090 ATAGTAGCCC
* *
60331100 GCACTTAGTACTACACATGCGACCTAGCTACATATATCTCGTAGCTCTCTTGTCTACATGGTGT
1 GCACTTAGTACCACACATGCGACCTAGCTACATATATCTCGTAGCTCTCTTGTCTACATGATGT
* * * * *
60331164 ACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTAC-ACATG
1 GCACTTAGTACCACACATGCGACCTAGCTACAT-AT-A--TCTCGTAGCTCTCTTGT-CTACATG
60331228 ATGT
61 ATGT
* * *
60331232 GCACTTAGCACCATACATGTGACCTAGCTACATACTATCT
1 GCACTTAGTACCACACATGCGACCTAGCTACATA-TATCT
60331272 GTATCATCCA
Statistics
Matches: 88, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
64 28 0.32
65 5 0.06
66 1 0.01
67 2 0.02
68 51 0.58
69 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (64 bp):
GCACTTAGTACCACACATGCGACCTAGCTACATATATCTCGTAGCTCTCTTGTCTACATGATGT
Found at i:60333840 original size:42 final size:41
Alignment explanation
Indices: 60333760--60333909 Score: 162
Period size: 41 Copynumber: 3.6 Consensus size: 41
60333750 GAGCTTGGTC
60333760 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
60333801 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
60333843 CCGAAGGGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
*
60333884 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
60333910 GAGTCGGACT
Statistics
Matches: 90, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
39 4 0.04
40 9 0.10
41 37 0.41
42 28 0.31
43 12 0.13
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:60333892 original size:41 final size:40
Alignment explanation
Indices: 60333740--60333909 Score: 161
Period size: 41 Copynumber: 4.2 Consensus size: 40
60333730 GCTAATCGGG
*
60333740 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
60333781 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
60333824 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
60333864 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
60333905 G-CTAA
1 GTCTAA
60333910 GAGTCGGACT
Statistics
Matches: 107, Mismatches: 10, Indels: 26
0.75 0.07 0.18
Matches are distributed among these distances:
39 7 0.07
40 14 0.13
41 50 0.47
42 23 0.21
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:60342182 original size:42 final size:41
Alignment explanation
Indices: 60342095--60342241 Score: 126
Period size: 42 Copynumber: 3.6 Consensus size: 41
60342085 AGCTTGGTCT
*
60342095 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTT
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTC
* * *
60342136 CGAAGGGCTTTTTAGAGCCAGTG-TCATAATCGGACTTAGTTC
1 CGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTTC
* * * *
60342178 CGAA-GGCCTTCGAGCCAGTAGTCTAAT--CCGAGCTT-GGTC
1 CGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTTC
*
60342217 TCGAAGGGCTTTT-AGCCGGTGCTAA
1 -CGAAGGGCTTTTGAGCCAGTGCTAA
60342242 GAGTCGGACT
Statistics
Matches: 85, Mismatches: 14, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
38 4 0.05
39 12 0.14
40 18 0.21
41 16 0.19
42 26 0.31
43 9 0.11
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (41 bp):
CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTC
Found at i:60346230 original size:40 final size:40
Alignment explanation
Indices: 60346066--60346230 Score: 201
Period size: 40 Copynumber: 4.1 Consensus size: 40
60346056 CAGAGTTTAA
** *
60346066 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60346106 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60346146 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
60346186 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
60346226 CCGGA
1 CCGGA
60346231 CATCATTCGA
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
39 4 0.04
40 93 0.86
41 11 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:60348024 original size:15 final size:16
Alignment explanation
Indices: 60347988--60348024 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
60347978 ACATATCATT
60347988 TATTTCATTATATCAA
1 TATTTCATTATATCAA
60348004 TATTTCA-TATA-CAA
1 TATTTCATTATATCAA
60348018 TAGTTTC
1 TA-TTTC
60348025 CATGTATTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 7 0.35
ACGTcount: A:0.35, C:0.14, G:0.03, T:0.49
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:60348042 original size:18 final size:18
Alignment explanation
Indices: 60348019--60348055 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
60348009 CATATACAAT
60348019 AGTTTCCATGTATTCCAC
1 AGTTTCCATGTATTCCAC
60348037 AGTTTCCATGTATTCCAC
1 AGTTTCCATGTATTCCAC
60348055 A
1 A
60348056 TATATTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.27, G:0.11, T:0.38
Consensus pattern (18 bp):
AGTTTCCATGTATTCCAC
Found at i:60349636 original size:46 final size:46
Alignment explanation
Indices: 60349420--60349639 Score: 257
Period size: 46 Copynumber: 4.8 Consensus size: 46
60349410 TGTAACCCTC
* ***
60349420 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAAAATTCGCAT
* * * *
60349466 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCG--GATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAAAATTCGC-A--T
* *** * *
60349512 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGAAATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGAAAATTCGCAT
60349559 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAAAATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAAAATTCGCAT
60349605 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
60349640 GATGCCCAAA
Statistics
Matches: 150, Mismatches: 17, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
46 110 0.73
47 31 0.21
49 4 0.03
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAAAATTCGCAT
Found at i:60352040 original size:51 final size:50
Alignment explanation
Indices: 60351871--60352053 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 50
60351861 CTGGTACGCA
* * * *
60351871 TAGTAGCTTACACTTAGTACTACTCATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCCGGTACACG
* ** *
60351920 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCCGGTACACG
* * * *
60351970 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-TTATCCGGTACACG
*
60352021 TAGTAGCCTGTACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
60352054 CAGCTACATA
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
49 30 0.27
50 44 0.39
51 38 0.34
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCCGGTACACG
Found at i:60353204 original size:27 final size:27
Alignment explanation
Indices: 60353174--60353263 Score: 128
Period size: 27 Copynumber: 3.3 Consensus size: 27
60353164 TACTGAAATG
* *
60353174 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* *
60353201 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
60353228 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCGTTTTA
60353255 CCCTCGATT
1 CCCTCGATT
60353264 GTGAAATTAC
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:60353282 original size:26 final size:25
Alignment explanation
Indices: 60353253--60353496 Score: 193
Period size: 27 Copynumber: 9.2 Consensus size: 25
60353243 ATTACCGTTT
* * **
60353253 TACCCTCGATTGTGAAATTACTGAAA
1 TACCCT-GTTTGTAAAATTACCAAAA
** *
60353279 TACCCTGTACGATAGAATTACCAAAA
1 TACCCTGTTTG-TAAAATTACCAAAA
60353305 TACCCCTAGTTTGTAAAATTACCAAAA
1 TA-CCCT-GTTTGTAAAATTACCAAAA
**
60353332 TACCCTGTTTGTAAAATTACTGAAA
1 TACCCTGTTTGTAAAATTACCAAAA
* *
60353357 TACCCTTTGTTATAAAATTACCAAAA
1 TACCCTGT-TTGTAAAATTACCAAAA
*
60353383 CACCCCTAGTTTGTAAAATTACCAAAA
1 TA-CCCT-GTTTGTAAAATTACCAAAA
* **
60353410 TACCTCTGGTTTGTGAAATTACCGCAA
1 TACC-CT-GTTTGTAAAATTACCAAAA
*
60353437 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCT--GTTTGTAAAATTACCAAAA
**
60353464 TACCCCTGATTTACAAAATTA-CAGAAA
1 TA-CCCTG-TTTGTAAAATTACCA-AAA
60353491 TACCCT
1 TACCCT
60353497 TGACTTTCTA
Statistics
Matches: 175, Mismatches: 32, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
25 26 0.15
26 47 0.27
27 94 0.54
28 8 0.05
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (25 bp):
TACCCTGTTTGTAAAATTACCAAAA
Found at i:60353324 original size:27 final size:27
Alignment explanation
Indices: 60353294--60353495 Score: 209
Period size: 27 Copynumber: 7.6 Consensus size: 27
60353284 TGTACGATAG
60353294 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
60353321 AATTACCAAAATA-CCCT-GTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
** * * *
60353346 AATTACTGAAATACCCTTTG-TTATAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
60353372 AATTACCAAAACACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
60353399 AATTACCAAAATACCTCTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
** *
60353426 AATTACCGCAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
60353453 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
60353480 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
60353496 TTGACTTTCT
Statistics
Matches: 143, Mismatches: 25, Indels: 14
0.79 0.14 0.08
Matches are distributed among these distances:
25 19 0.13
26 32 0.22
27 88 0.62
28 4 0.03
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:60353324 original size:53 final size:52
Alignment explanation
Indices: 60353262--60353496 Score: 215
Period size: 54 Copynumber: 4.4 Consensus size: 52
60353252 TTACCCTCGA
* * ** *
60353262 TTGTGAAATTACTGAAATACCCT-GTACGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCGAAATACCCTAGTTTG-TAAAATTACCAAAATACCCCT-GT
* ** *
60353315 TTGTAAAATTACCAAAATACCCT-GTTTGTAAAATTACTGAAATA-CCCTTT
1 TTGTAAAATTACCGAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTGT
* * * *
60353365 GTTATAAAATTACCAAAACACCCCTAGTTTGTAAAATTACCAAAATACCTCTGGT
1 -TTGTAAAATTACCGAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCCT-GT
* * *
60353420 TTGTGAAATTACCGCAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCGAAATACCCT-AGTTTGTAAAATTACCAAAATACCCCTG-T
** *
60353474 TTACAAAATTACAGAAATACCCT
1 TTGTAAAATTACCGAAATACCCT
60353497 TGACTTTCTA
Statistics
Matches: 148, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
50 1 0.01
51 21 0.14
52 17 0.11
53 47 0.32
54 61 0.41
55 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (52 bp):
TTGTAAAATTACCGAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTGT
Found at i:60353546 original size:27 final size:27
Alignment explanation
Indices: 60353473--60353558 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 27
60353463 ATACCCCTGA
* * * *
60353473 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTATAAAATTATAGAAATACCATTG-G
* *
60353501 TTTCTAAAAATTATAGAAATACTATTGG
1 TTTAT-AAAATTATAGAAATACCATTGG
*
60353529 TTTATAAAATTACT-GAAATACCCTTGG
1 TTTATAAAATTA-TAGAAATACCATTGG
60353556 TTT
1 TTT
60353559 GTAGATTTAC
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
27 21 0.45
28 8 0.17
29 18 0.38
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (27 bp):
TTTATAAAATTATAGAAATACCATTGG
Found at i:60354563 original size:24 final size:24
Alignment explanation
Indices: 60354480--60354563 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
60354470 GAGGAAGTGC
*
60354480 TAAAAGGGCTCTGCCCCAGTTTACT
1 TAAAAGGGCTTTGCCCCAGTTTA-T
*
60354505 GAAAAGGGCTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
60354529 CAGAAAGGGCTTTGCCCCAG-TTAT
1 TA-AAAGGGCTTTGCCCCAGTTTAT
60354553 TAAAAGAGGCT
1 TAAAAG-GGCT
60354564 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
23 4 0.08
24 11 0.21
25 38 0.72
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:60354757 original size:42 final size:42
Alignment explanation
Indices: 60354698--60354825 Score: 211
Period size: 42 Copynumber: 3.0 Consensus size: 42
60354688 TAGTCTCCCC
60354698 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
60354740 AAATGGGCTTGCATACATTCATTGACATTGCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
** * *
60354782 AAATAAGTTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
60354824 AA
1 AA
60354826 GTAGGCCTAA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:60354891 original size:31 final size:31
Alignment explanation
Indices: 60354855--60354969 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
60354845 CGTTTACAGT
*
60354855 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
60354886 AAAGGCTTCGGCCCAGTGATATGACTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
60354917 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
60354948 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
60354970 TCAAGACTAA
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 75 0.94
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:60357804 original size:38 final size:35
Alignment explanation
Indices: 60357745--60357862 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
60357735 TCAATCATGC
*
60357745 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
60357784 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
60357815 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
60357846 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
60357863 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:60357806 original size:31 final size:31
Alignment explanation
Indices: 60357768--60357862 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
60357758 CCTTTTCATA
*
60357768 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
60357799 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
60357830 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
60357861 TT
1 TT
60357863 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:60358105 original size:24 final size:24
Alignment explanation
Indices: 60358054--60358220 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
60358044 GCTTTATCAT
* *
60358054 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
60358079 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
60358103 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
60358126 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
60358150 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
60358174 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
60358198 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
60358221 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:60358154 original size:71 final size:71
Alignment explanation
Indices: 60358053--60358220 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
60358043 TGCTTTATCA
*
60358053 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
60358117 AGCCCTTT
64 AGCCCTTT
* * **
60358125 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
60358190 CCCTTT
66 CCCTTT
60358196 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
60358221 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:60358296 original size:20 final size:20
Alignment explanation
Indices: 60358271--60358330 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
60358261 TATGATTACC
60358271 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
60358291 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
60358311 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
60358331 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:60358405 original size:25 final size:25
Alignment explanation
Indices: 60358373--60358420 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
60358363 ATACATAAAC
* * *
60358373 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
60358398 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
60358421 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:60359609 original size:27 final size:27
Alignment explanation
Indices: 60359579--60359634 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
60359569 GGGCATATTC
*
60359579 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
60359606 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
60359633 GT
1 GT
60359635 GTTGTTACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:60359727 original size:27 final size:27
Alignment explanation
Indices: 60359697--60359748 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
60359687 GTAAATCAAC
60359697 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
60359724 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
60359749 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:60359810 original size:27 final size:27
Alignment explanation
Indices: 60359780--60359857 Score: 79
Period size: 26 Copynumber: 2.9 Consensus size: 27
60359770 GTAACTTTGT
60359780 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAATTAGGGGTATTTTGGTAATTTTAC
* *
60359807 AAATT-GAGGGT-TTTCGGTAATTTCAC
1 AAATTAG-GGGTATTTTGGTAATTTTAC
** * *
60359833 AAACCAAGGGTATTTTAGTAATTTT
1 AAATTAGGGGTATTTTGGTAATTTT
60359858 GTAAATCGAG
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 21 0.52
27 19 0.47
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
AAATTAGGGGTATTTTGGTAATTTTAC
Found at i:60359869 original size:27 final size:27
Alignment explanation
Indices: 60359705--60359952 Score: 108
Period size: 27 Copynumber: 9.1 Consensus size: 27
60359695 ACAAACCAAA
* * *
60359705 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTGTAAATCAAG
60359732 GGTATTTCTA-TAATTTT-TAGAAAGTCAAG
1 GGTATTT-TAGTAATTTTGT--AAA-TCAAG
* * *
60359761 GGTATTTCT-GTAACTTTGTAAATTAGG
1 GGTATTT-TAGTAATTTTGTAAATCAAG
* ** **
60359788 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTTGTAAATCAAG
** *** *
60359815 GGT-TTTCGGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTGTAAATCAAG
*
60359841 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTGTAAATCAAG
**** *
60359868 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTGTAAATCAAG
**** * *
60359895 GGTAAAACAGTAATTCTATAAATCAAG
1 GGTATTTTAGTAATTTTGTAAATCAAG
*** * * *
60359922 GGTAAAATAGTAATTCTATAAATCAAC
1 GGTATTTTAGTAATTTTGTAAATCAAG
60359949 GGTA
1 GGTA
60359953 AAACAGTAAT
Statistics
Matches: 181, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
26 23 0.13
27 132 0.73
28 7 0.04
29 18 0.10
30 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTGTAAATCAAG
Found at i:60360248 original size:27 final size:27
Alignment explanation
Indices: 60359850--60360241 Score: 419
Period size: 27 Copynumber: 14.6 Consensus size: 27
60359840 GGGTATTTTA
* * *
60359850 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTATGTAAATCAAGGGTAAAACG
* *
60359877 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTATGTAAATCAAGGGTAAAACG
* * **
60359904 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTATGTAAATCAAGGGTAAAACG
* * * *
60359931 GTAATTCTATAAATCAACGGTAAAACA
1 GTAATTATGTAAATCAAGGGTAAAACG
*
60359958 GTAATTCA-GTAAATCGAGGGTAAAACG
1 GTAATT-ATGTAAATCAAGGGTAAAACG
* * *
60359985 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTATGTAAATCAAGGGTAAAACG
* * *
60360012 ATAATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCAAGGGTAAAACG
* *
60360039 GTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCAAGGGTAAAACG
* * * *
60360066 ATAATTTTGTAAGTCGAGGGTAAAACG
1 GTAATTATGTAAATCAAGGGTAAAACG
*
60360093 ATAATTATGTAAATC-AGGGTAAAACG
1 GTAATTATGTAAATCAAGGGTAAAACG
* * *
60360119 GCAATTATGTAAATTAGGGGTAAAACG
1 GTAATTATGTAAATCAAGGGTAAAACG
* * *
60360146 GTAATTTTGTAAGTCGAGGGTAAAACG
1 GTAATTATGTAAATCAAGGGTAAAACG
* *
60360173 ATAATTATGTAAATCAGGGGTAAAACG
1 GTAATTATGTAAATCAAGGGTAAAACG
* *
60360200 GTAATTATGTAAATTATGGGTAAAACG
1 GTAATTATGTAAATCAAGGGTAAAACG
*
60360227 GTAATTCTGTAAATC
1 GTAATTATGTAAATC
60360242 GGGGGTACTT
Statistics
Matches: 314, Mismatches: 48, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
26 23 0.07
27 291 0.93
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
GTAATTATGTAAATCAAGGGTAAAACG
Found at i:60360259 original size:81 final size:81
Alignment explanation
Indices: 60359851--60360248 Score: 509
Period size: 81 Copynumber: 4.9 Consensus size: 81
60359841 GGTATTTTAG
* * * * * * *
60359851 TAATTTTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATA
1 TAATTATGTAAATCAG-GGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTA
* * *
60359915 AATCAAGGGTAAAA-TA
65 AGTCGAGGGTAAAACGA
* * ** * *
60359931 GTAATTCTATAAATCAACGGTAAAACAGTAATTCA-GTAAA-TCGAGGGTAAAACGGTAATTCTG
1 -TAATTATGTAAATCAGGGGTAAAACGGTAATT-ATGTAAATTAG-GGGTAAAACGGTAATTCTG
60359994 TAAGTCGAGGGTAAAACGA
63 TAAGTCGAGGGTAAAACGA
* * *
60360013 TAATTATGTAAATTAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGATAATTTTGTAA
1 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
60360078 GTCGAGGGTAAAACGA
66 GTCGAGGGTAAAACGA
* *
60360094 TAATTATGTAAATCA-GGGTAAAACGGCAATTATGTAAATTAGGGGTAAAACGGTAATTTTGTAA
1 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
60360158 GTCGAGGGTAAAACGA
66 GTCGAGGGTAAAACGA
*
60360174 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTATGGGTAAAACGGTAATTCTGTAA
1 TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
* *
60360239 ATCGGGGGTA
66 GTCGAGGGTA
60360249 CTTTAGTAAT
Statistics
Matches: 280, Mismatches: 30, Indels: 14
0.86 0.09 0.04
Matches are distributed among these distances:
80 79 0.28
81 198 0.71
82 3 0.01
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (81 bp):
TAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAATTCTGTAA
GTCGAGGGTAAAACGA
Found at i:60360275 original size:27 final size:27
Alignment explanation
Indices: 60360245--60360343 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
60360235 GTAAATCGGG
*
60360245 GGTACTTT-AGTAATTTTACAAGTCGAA
1 GGTA-TTTCAGTAATTTTACAAATCGAA
* * *
60360272 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCAGTAATTTTACAAATCGAA
* *
60360299 GGTATTTCAGTATTTTTACAAA-CTAA
1 GGTATTTCAGTAATTTTACAAATCGAA
*
60360325 GGGTATTTCGGTAATTTTA
1 -GGTATTTCAGTAATTTTA
60360344 GTAAACTAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.08
27 54 0.92
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAATCGAA
Found at i:60360283 original size:54 final size:53
Alignment explanation
Indices: 60360237--60360341 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 53
60360227 GTAATTCTGT
* *
60360237 AAATCGGGGGTACTTT-AGTAATTTTACAAGTCGAA-GGTATTTCGGTAAATTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCGGT-AATTTAC
* *
60360291 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTT
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTT
60360342 TAGTAAACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
53 11 0.24
54 34 0.76
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.37
Consensus pattern (53 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCGGTAATTTAC
Found at i:60360357 original size:27 final size:27
Alignment explanation
Indices: 60360253--60360358 Score: 74
Period size: 27 Copynumber: 3.9 Consensus size: 27
60360243 GGGGTACTTT
* *
60360253 AGTAATTTTACAAGTCGAAG-GTATTTC
1 AGTAATTTTACAA-ACTAAGAGTATTTC
* * * *
60360280 GGTAAATTTACAAA-TCGAGGGTATTTC
1 AGTAATTTTACAAACT-AAGAGTATTTC
* *
60360307 AGTATTTTTACAAACTAAGGGTATTTC
1 AGTAATTTTACAAACTAAGAGTATTTC
* *
60360334 GGTAATTTTAGTAAACTAA-AGTATT
1 AGTAATTTTA-CAAACTAAGAGTATT
60360359 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 13, Indels: 8
0.75 0.16 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.84
28 8 0.13
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (27 bp):
AGTAATTTTACAAACTAAGAGTATTTC
Found at i:60361376 original size:27 final size:27
Alignment explanation
Indices: 60361346--60361462 Score: 146
Period size: 27 Copynumber: 4.3 Consensus size: 27
60361336 TACTGAAATG
* * *
60361346 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
** *
60361373 CCCTTAATTTACAAAATTACAATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
60361400 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
60361427 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
*
60361454 CCTTCGATT
1 CCCTCGATT
60361463 GTGAAATTAC
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 75 0.97
28 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:60361408 original size:54 final size:54
Alignment explanation
Indices: 60361346--60361462 Score: 162
Period size: 54 Copynumber: 2.2 Consensus size: 54
60361336 TACTGAAATG
* * * *
60361346 CCCTCGATTTATAGAATTACCGTTTTACCCTTAATTTACAAAATTACAATTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACAATTTTA
* **
60361400 CCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACAATTTTA
*
60361454 CCTTCGATT
1 CCCTCGATT
60361463 GTGAAATTAC
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.39
Consensus pattern (54 bp):
CCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACAATTTTA
Found at i:60361524 original size:27 final size:27
Alignment explanation
Indices: 60361494--60361590 Score: 113
Period size: 27 Copynumber: 3.6 Consensus size: 27
60361484 TGTAGGATAG
60361494 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
**
60361521 AATTACCAAAATATACCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
** * * *
60361548 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
60361575 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
60361591 TTGTAGGATG
Statistics
Matches: 57, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:60361533 original size:54 final size:54
Alignment explanation
Indices: 60361461--60361620 Score: 135
Period size: 54 Copynumber: 3.0 Consensus size: 54
60361451 TTACCTTCGA
* ** *
60361461 TTGTGAAATTACTGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGTAGGATAGAATTACTAAAATACCCCTAGT
** ** * * * *
60361515 TTGTAAAATTACCAAAATATACCTAGTTTG-TAAAATTACTGAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCT-GTAGGATAGAATTACTAAAATACCCCTAGT
* * * * *
60361569 TTGTAGATTTACCAAAACACCCTTGTAGGAT-GAAATGACTAAAATACCCCTA
1 TTGTAAAATTACCAAAATACCCCTGTAGGATAG-AATTACTAAAATACCCCTA
60361621 ATAGGTAAAA
Statistics
Matches: 78, Mismatches: 25, Indels: 6
0.72 0.23 0.06
Matches are distributed among these distances:
53 3 0.04
54 72 0.92
55 3 0.04
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTGTAGGATAGAATTACTAAAATACCCCTAGT
Found at i:60361654 original size:27 final size:27
Alignment explanation
Indices: 60361611--60361684 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
60361601 AAATGACTAA
*
60361611 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
60361638 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
60361665 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
60361685 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:60361688 original size:27 final size:27
Alignment explanation
Indices: 60361624--60361688 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
60361614 ACCCCTAATA
*
60361624 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
60361651 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
60361678 GGTAAAATGAC
1 GGTAAAATGAC
60361689 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:60362538 original size:25 final size:24
Alignment explanation
Indices: 60362500--60362577 Score: 95
Period size: 25 Copynumber: 3.2 Consensus size: 24
60362490 AGGAAGTGCT
* *
60362500 AAAAGGGCTCTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTA-TC
60362525 AAAAGGGCTTTGCCCCAGTTTATC
1 AAAAGGGCTTTGCCCCAGTTTATC
* *
60362549 AGAAAGGGCTTTGCCCTAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATC
60362573 AAAAG
1 AAAAG
60362578 AGGGTAGGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
23 4 0.08
24 7 0.15
25 37 0.77
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:60362776 original size:42 final size:42
Alignment explanation
Indices: 60362717--60362844 Score: 211
Period size: 42 Copynumber: 3.0 Consensus size: 42
60362707 TAGTCTCCCC
60362717 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
60362759 AAATGGGCTTGCATACATTCGTTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
** * *
60362801 AAATAAGTTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
60362843 AA
1 AA
60362845 GTAGGCCTAA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:60362910 original size:31 final size:31
Alignment explanation
Indices: 60362874--60363019 Score: 258
Period size: 31 Copynumber: 4.7 Consensus size: 31
60362864 CGTTTACAGT
*
60362874 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
60362905 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
60362936 AAAGGCTTCGGCCCAGTGATATGACTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
60362967 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
60362998 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
60363020 TCAAGACTAA
Statistics
Matches: 111, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 5 0.05
31 106 0.95
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:60365299 original size:27 final size:27
Alignment explanation
Indices: 60365269--60365385 Score: 164
Period size: 27 Copynumber: 4.3 Consensus size: 27
60365259 TACTGAAATG
* * *
60365269 CCCTCGATTTATAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
60365296 CCCTCAATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
60365323 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
*
60365350 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
*
60365377 CCTTCGATT
1 CCCTCGATT
60365386 GTGAAATTAC
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.01
27 79 0.98
28 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:60365456 original size:54 final size:54
Alignment explanation
Indices: 60365384--60365543 Score: 162
Period size: 54 Copynumber: 3.0 Consensus size: 54
60365374 TTACCTTCGA
* ** *
60365384 TTGTGAAATTACTGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGTAGGATAGAATTACTAAAATACCCCTAGT
** * * *
60365438 TTGTAAAATTACCAAAATACCCCTAGTTTG-TAAAATTACTAAAATACCCTTGGT
1 TTGTAAAATTACCAAAATACCCCT-GTAGGATAGAATTACTAAAATACCCCTAGT
* * * * *
60365492 TTGTAGATTTACCAAAACACCCTTGTAGGAT-GAAATGACTAAAATACCCCTA
1 TTGTAAAATTACCAAAATACCCCTGTAGGATAG-AATTACTAAAATACCCCTA
60365544 ATAGGTAAAA
Statistics
Matches: 84, Mismatches: 19, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
53 3 0.04
54 78 0.93
55 3 0.04
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.29
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTGTAGGATAGAATTACTAAAATACCCCTAGT
Found at i:60365516 original size:27 final size:27
Alignment explanation
Indices: 60365417--60365513 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
60365407 TGTAGGATAG
60365417 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
60365444 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
60365471 AATTACTAAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
60365498 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
60365514 TTGTAGGATG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:60365570 original size:27 final size:27
Alignment explanation
Indices: 60365538--60365589 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
60365528 GACTAAAATA
60365538 CCCCTAATA-GGTAAAAAGACCGTAAAG
1 CCCCT-ATAGGGTAAAAAGACCGTAAAG
**
60365565 CCCCTATAGGGTAAAGTGACCGTAA
1 CCCCTATAGGGTAAAAAGACCGTAA
60365590 TACCCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (27 bp):
CCCCTATAGGGTAAAAAGACCGTAAAG
Found at i:60366465 original size:25 final size:25
Alignment explanation
Indices: 60366435--60366492 Score: 91
Period size: 25 Copynumber: 2.3 Consensus size: 25
60366425 AAAAGCTCTA
60366435 CCCCAGTTTACC-GAAAAGGGCTTTG
1 CCCCAGTTTACCAG-AAAGGGCTTTG
*
60366460 CCCCAGTTTATCAGAAAGGGCTTTG
1 CCCCAGTTTACCAGAAAGGGCTTTG
60366485 CCCCAGTT
1 CCCCAGTT
60366493 ATTAAAAGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 30 0.97
26 1 0.03
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.26
Consensus pattern (25 bp):
CCCCAGTTTACCAGAAAGGGCTTTG
Found at i:60366505 original size:24 final size:24
Alignment explanation
Indices: 60366435--60366505 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 24
60366425 AAAAGCTCTA
*
60366435 CCCCAGTTTACCGAAAAGGGCTTTG
1 CCCCAGTTTATC-AAAAGGGCTTTG
60366460 CCCCAGTTTATCAGAAAGGGCTTTG
1 CCCCAGTTTATCA-AAAGGGCTTTG
*
60366485 CCCCAG-TTATTAAAAGAGGCT
1 CCCCAGTTTATCAAAAG-GGCT
60366506 AAGCCTCTAG
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 4 0.10
24 10 0.24
25 28 0.67
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (24 bp):
CCCCAGTTTATCAAAAGGGCTTTG
Found at i:60368183 original size:40 final size:40
Alignment explanation
Indices: 60368012--60368176 Score: 246
Period size: 40 Copynumber: 4.2 Consensus size: 40
60368002 AACCCAAGTA
* **
60368012 CCTTCGGGATTTAG-CCGGATATAACAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACT-AGCACAAATG
* *
60368051 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
60368091 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
60368130 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
60368170 CCTTCGG
1 CCTTCGG
60368177 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 51 0.44
40 64 0.56
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:60368183 original size:79 final size:80
Alignment explanation
Indices: 60368012--60368188 Score: 247
Period size: 79 Copynumber: 2.2 Consensus size: 80
60368002 AACCCAAGTA
60368012 CCTTCGGGAT-TTAGCCGGATATAACAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGATCTTAGCCGGATATAACAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
* *
60368076 TAACTCGTACAAATG
66 TAACTAGCACAAATG
**
60368091 CCTTCGGGA-CTTAGCCCGGATATAGTAACT-AGCAC-AATGCCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGATCTTAG-CCGGATATAACAACTCA-CACAAATGCCTTCGGGACTTAGCCCGGATAT
*
60368153 AGTCACTAGCACAAATG
64 AGTAACTAGCACAAATG
60368170 CCTTC-GGATCTTAGTCCGG
1 CCTTCGGGATCTTAG-CCGG
60368189 TTATCATCCG
Statistics
Matches: 88, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
78 3 0.03
79 69 0.78
80 16 0.18
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGATCTTAGCCGGATATAACAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAAATG
Found at i:60369571 original size:13 final size:13
Alignment explanation
Indices: 60369553--60369578 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60369543 TTTTTTATTT
60369553 TTAACATAAAATA
1 TTAACATAAAATA
60369566 TTAACATAAAATA
1 TTAACATAAAATA
60369579 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:60376162 original size:40 final size:40
Alignment explanation
Indices: 60376088--60376213 Score: 200
Period size: 40 Copynumber: 3.2 Consensus size: 40
60376078 AACCCAAGTA
* * *
60376088 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
60376127 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
60376167 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
60376207 CCTTCGG
1 CCTTCGG
60376214 AATCTTAGTC
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.16
40 67 0.84
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:60377987 original size:42 final size:42
Alignment explanation
Indices: 60377928--60378055 Score: 229
Period size: 42 Copynumber: 3.0 Consensus size: 42
60377918 TAGTTTCCCC
60377928 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
60377970 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
* * *
60378012 AAATGGGCTTGTATACATCCATTGACATTACATGTGATGTTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
60378054 AA
1 AA
60378056 GTAGGCCTAA
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 83 1.00
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:60378120 original size:31 final size:31
Alignment explanation
Indices: 60378085--60378199 Score: 169
Period size: 31 Copynumber: 3.7 Consensus size: 31
60378075 CGTTTACAGT
*
60378085 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
* *
60378116 AAAGGCTTTAGCCTAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
* *
60378147 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
60378178 AAAGGCTTCAGCCTAGT-ATATG
1 AAAGGCTTCAGCCCAGTGATATG
60378200 TCAAGACTAA
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
30 5 0.07
31 70 0.93
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:60379650 original size:30 final size:30
Alignment explanation
Indices: 60379616--60379676 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
60379606 TCCTTAACTC
60379616 AAACTTTTACAAATTTACAATTTTGCCCCT
1 AAACTTTTACAAATTTACAATTTTGCCCCT
* *
60379646 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTTACAAATTTACAATTTTGCCCCT
60379676 A
1 A
60379677 GGCTCGGGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.25, G:0.03, T:0.41
Consensus pattern (30 bp):
AAACTTTTACAAATTTACAATTTTGCCCCT
Found at i:60383788 original size:60 final size:60
Alignment explanation
Indices: 60383695--60383819 Score: 250
Period size: 60 Copynumber: 2.1 Consensus size: 60
60383685 AATTTTATAT
60383695 TTTTGGAACCTTAAAATTTTGTAGTAGGTTACTCATGTGGAAATTTAGAGAAATTATGAC
1 TTTTGGAACCTTAAAATTTTGTAGTAGGTTACTCATGTGGAAATTTAGAGAAATTATGAC
60383755 TTTTGGAACCTTAAAATTTTGTAGTAGGTTACTCATGTGGAAATTTAGAGAAATTATGAC
1 TTTTGGAACCTTAAAATTTTGTAGTAGGTTACTCATGTGGAAATTTAGAGAAATTATGAC
60383815 TTTTG
1 TTTTG
60383820 TGGAAGTTGC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 65 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (60 bp):
TTTTGGAACCTTAAAATTTTGTAGTAGGTTACTCATGTGGAAATTTAGAGAAATTATGAC
Found at i:60385651 original size:47 final size:47
Alignment explanation
Indices: 60385597--60385983 Score: 504
Period size: 47 Copynumber: 8.1 Consensus size: 47
60385587 TTAGGATTTT
** * *
60385597 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
60385644 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATA--TGTGATAAGGCCGAATGGCCA
** * * *
60385695 ATGTGATGAATGTGAACATGCGTATGTATGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
60385742 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATA--TGTGATAAGGCCGAATGGCCA
** *
60385793 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
** *
60385840 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
60385887 ATGTGATGAATGTGAACATGCATATATGAGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
60385934 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
60385981 ATG
1 ATG
60385984 AGAAATGTGT
Statistics
Matches: 303, Mismatches: 29, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
47 212 0.70
49 15 0.05
51 76 0.25
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:60385701 original size:98 final size:97
Alignment explanation
Indices: 60385597--60385983 Score: 554
Period size: 98 Copynumber: 4.0 Consensus size: 97
60385587 TTAGGATTTT
** *
60385597 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
60385662 TGTATATATATGTGTGATAAGGCCGAATGGCCA
66 TG-ATATATATGTGTGATAAGGCCGAATGGCCA
* *
60385695 ATGTGATGAATGTGAACATGCGTATGT-ATGATAAGGCCGAATGGCAAATGTGATGAATGTGAAC
1 ATGTGATGAATGTGAACATGCATATATGA-GATAAGGCCGAATGGCAAATGTGATGAATGTGAAC
60385759 CTGTATATATATGTGTGATAAGGCCGAATGGCCA
65 CTG-ATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
60385793 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
***
60385857 --ATGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGATATATATGTGTGATAAGGCCGAATGGCCA
* * *
60385887 ATGTGATGAATGTGAACATGCATATATGAGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
*
60385952 TG-TATATATGTG-G-TAAGGCCGAATGGCTA
66 TGATATATATGTGTGATAAGGCCGAATGGCCA
60385981 ATG
1 ATG
60385984 AGAAATGTGT
Statistics
Matches: 265, Mismatches: 19, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
94 104 0.39
95 1 0.00
96 7 0.03
97 2 0.01
98 151 0.57
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (97 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
TGATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:60385746 original size:145 final size:144
Alignment explanation
Indices: 60385597--60385983 Score: 561
Period size: 145 Copynumber: 2.7 Consensus size: 144
60385587 TTAGGATTTT
*
60385597 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
60385662 TGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTATGAT
66 TG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTATGAT
60385727 AAGGCCGAATGGCAA
130 AAGGCCGAATGGCAA
* *
60385742 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
1 ATGTGATGAATGTGAA--TGTGTATATA--TGAGATAAGGCCGAATGGCCAATGTGATGAATGTG
*** *
60385807 AA-C--ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGT
62 AACCTGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTAT
*
60385869 GATAAGGCCGAATGGCCA
127 GATAAGGCCGAATGGCAA
** * * *
60385887 ATGTGATGAATGTGAACATGCATATATGAGATAAGGTCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
60385952 TG-TATATATGTG-G-TAAGGCCGAATGGCTAATG
66 TGATATATATGTGTGATAAGGCCGAATGGCCAATG
60385984 AGAAATGTGT
Statistics
Matches: 216, Mismatches: 19, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
141 53 0.25
142 1 0.00
143 13 0.06
145 104 0.48
147 9 0.04
148 1 0.00
149 35 0.16
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (144 bp):
ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
TGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTATGATA
AGGCCGAATGGCAA
Found at i:60386090 original size:46 final size:46
Alignment explanation
Indices: 60385957--60386093 Score: 175
Period size: 46 Copynumber: 3.0 Consensus size: 46
60385947 GAACATGTAT
* * * *
60385957 ATATGTGGTAAGGCCGAATGGCTAATGAGAAATGTGTATGAAATAG
1 ATATGTGGTAAAGCCAAATGGCTAATGAGAAATGTGTATGAGATGG
* * * *
60386003 ATATGAGGTAAAGCCAAATAGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGAGAAATGTGTATGAGATGG
* * *
60386049 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGAGAAATGTGTATGAGATG
60386094 TGTATATATA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.37, C:0.08, G:0.29, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGAGAAATGTGTATGAGATGG
Found at i:60394989 original size:26 final size:26
Alignment explanation
Indices: 60394960--60395011 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
60394950 TACTTGATGC
60394960 ATATGTAAACTTTGATACTAACATGT
1 ATATGTAAACTTTGATACTAACATGT
*
60394986 ATATGTAAACTTTGATATTAACATGT
1 ATATGTAAACTTTGATACTAACATGT
60395012 TTGATTGGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (26 bp):
ATATGTAAACTTTGATACTAACATGT
Found at i:60397329 original size:45 final size:44
Alignment explanation
Indices: 60397279--60397366 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 44
60397269 GCCAAAACAT
* *
60397279 GTGTCATACATATCACGAACTTAGACCACAACTCAATGAGTTCAG
1 GTGTCACACATATCACGAACTCAGA-CACAACTCAATGAGTTCAG
** *
60397324 GTGTCACATGTATCATGAACTCAGACACAACTCAATGAGTTCA
1 GTGTCACACATATCACGAACTCAGACACAACTCAATGAGTTCA
60397367 AATTACCTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
44 18 0.47
45 20 0.53
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (44 bp):
GTGTCACACATATCACGAACTCAGACACAACTCAATGAGTTCAG
Found at i:60405266 original size:45 final size:44
Alignment explanation
Indices: 60405216--60405300 Score: 134
Period size: 45 Copynumber: 1.9 Consensus size: 44
60405206 CCAAAACATG
*
60405216 TGTCATACATATCACGAACTTAGACCACAACTCAATGAGTTCGGA
1 TGTCATACATATCACGAACTCAGA-CACAACTCAATGAGTTCGGA
* *
60405261 TGTCATATATATCATGAACTCAGACACAACTCAATGAGTT
1 TGTCATACATATCACGAACTCAGACACAACTCAATGAGTT
60405301 TAGATTACAT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 16 0.43
45 21 0.57
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.27
Consensus pattern (44 bp):
TGTCATACATATCACGAACTCAGACACAACTCAATGAGTTCGGA
Found at i:60410464 original size:42 final size:42
Alignment explanation
Indices: 60410351--60410464 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 42
60410341 TGAGATATCG
* *
60410351 TGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCGATT-AGATTTACA
**
60410394 TAAAAGACCATGTCTGGGACATCA-GCATCGTATCT-GATTT-CA
1 TGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-TAGATTTACA
* *
60410436 TGTAAGACCCTGTCTGGGACAGAGGCATC
1 TGTAAGACCATGTCTGGGACACAGGCATC
60410465 AATCACGTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 28 0.47
44 4 0.07
45 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGATTAGATTTACA
Found at i:60412478 original size:21 final size:21
Alignment explanation
Indices: 60412453--60412507 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
60412443 ACGGCTTGAC
*
60412453 CACACAGGCGTGTCCCTAGAA
1 CACACGGGCGTGTCCCTAGAA
60412474 CACACGGGCGTGTCCCTAGAA
1 CACACGGGCGTGTCCCTAGAA
*
60412495 CACATGGGCGTGT
1 CACACGGGCGTGT
60412508 GAGCCTTGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.24, C:0.31, G:0.29, T:0.16
Consensus pattern (21 bp):
CACACGGGCGTGTCCCTAGAA
Found at i:60416287 original size:31 final size:31
Alignment explanation
Indices: 60416238--60416352 Score: 169
Period size: 31 Copynumber: 3.7 Consensus size: 31
60416228 TTAGTCTTGA
* *
60416238 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
* *
60416268 CATATCACTAGGTCAAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
*
60416299 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTAGGCCGAAGCCTTTTCATAAAT
*
60416330 CATATCACTTGGCCGAAGCCTTT
1 CATATCACTAGGCCGAAGCCTTT
60416353 ACTGTAAACA
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
30 5 0.07
31 71 0.93
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (31 bp):
CATATCACTAGGCCGAAGCCTTTTCATAAAT
Found at i:60416605 original size:25 final size:25
Alignment explanation
Indices: 60416571--60416640 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
60416561 CTCTTTTAAT
* *
60416571 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
60416596 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
60416621 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
60416641 AGCAGTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:60417512 original size:27 final size:27
Alignment explanation
Indices: 60417447--60417512 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
60417437 GGGCATATTC
*
60417447 GTCATTTTACCATACAAGGGTATTACG
1 GTCATTTTACCTTACAAGGGTATTACG
* *
60417474 GTCACTTTACCTTACAGGGGCT-TTACG
1 GTCATTTTACCTTACAAGGG-TATTACG
*
60417501 GTCTTTTTACCT
1 GTCATTTTACCT
60417513 ATTAGGGGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (27 bp):
GTCATTTTACCTTACAAGGGTATTACG
Found at i:60417595 original size:27 final size:27
Alignment explanation
Indices: 60417565--60417785 Score: 135
Period size: 27 Copynumber: 8.1 Consensus size: 27
60417555 GTAAATCTAC
60417565 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
60417592 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
60417618 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * ** **
60417648 AAATCAGGGGTATTTTGGTAATTTTAA
1 AAACCAAGGGTATTTCAGTAATTTTGT
** ***
60417675 AAATTAAGGGTATTTC-GCTAATTTCAC
1 AAACCAAGGGTATTTCAG-TAATTTTGT
* * ** **
60417702 GAACC-AGTAGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTGT
* * **
60417729 AAACTAGGGGTATTTTGGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
60417756 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
60417783 AAA
1 AAA
60417786 TCGAGGTAAA
Statistics
Matches: 155, Mismatches: 29, Indels: 20
0.76 0.14 0.10
Matches are distributed among these distances:
26 4 0.03
27 123 0.79
28 9 0.06
29 18 0.12
30 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:60417761 original size:54 final size:54
Alignment explanation
Indices: 60417550--60417780 Score: 214
Period size: 54 Copynumber: 4.2 Consensus size: 54
60417540 TACAAGGGTG
* * * * *
60417550 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACCAGTGGTA
* * * * * *
60417604 TTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTA
1 TTT-TGGTAA-TTTTACAAACT-AAGGGTATTTCGGTAATTTTGTAAACCAGTGGTA
* * * **** *
60417660 TTTTGGTAATTTTAAAAATTAAGGGTATTTCGCTAATTTCACGAACCAGTAGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACCAGTGGTA
* *
60417714 TTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAG-GGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACC-AGTGGTA
*
60417768 TTTTAGTAATTTT
1 TTTTGGTAATTTT
60417781 GTAAATCGAG
Statistics
Matches: 139, Mismatches: 33, Indels: 10
0.76 0.18 0.05
Matches are distributed among these distances:
54 84 0.60
55 19 0.14
56 36 0.26
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (54 bp):
TTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACCAGTGGTA
Found at i:60417765 original size:81 final size:81
Alignment explanation
Indices: 60417550--60417770 Score: 200
Period size: 81 Copynumber: 2.7 Consensus size: 81
60417540 TACAAGGGTG
* * * * ** * *
60417550 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATT
1 TTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCGATAATT
*
60417615 TTTAGAAAGTCAAGGGTA
66 TTCAGAAAGT-AA-GGTA
** ** ** *
60417633 TTTCT-GTAATTTTGTAAA-TCAGGGGTATTTTGGTAATTTTAAAAATTAAGGGTATTTCGCTAA
1 TTT-TGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCGATAA
60417696 -TTTCACGAACCAGT-A-GTA
64 TTTTCA-GAA--AGTAAGGTA
60417714 TTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
1 TTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
60417771 TAGTAATTTT
Statistics
Matches: 109, Mismatches: 22, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
80 1 0.01
81 50 0.46
82 5 0.05
83 49 0.45
84 1 0.01
85 3 0.03
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (81 bp):
TTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCGATAATT
TTCAGAAAGTAAGGTA
Found at i:60417829 original size:27 final size:27
Alignment explanation
Indices: 60417773--60417901 Score: 197
Period size: 27 Copynumber: 4.8 Consensus size: 27
60417763 GGGTATTTTA
* *
60417773 GTAATTTTGTAAATCGA-GGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
60417799 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
60417826 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
60417853 GTAATTCTATAAATCGAGGGTAAAACT
1 GTAATTCTGTAAATCGAGGGTAAAACG
60417880 GTAATTCTGTAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
60417902 CTTTGGTAAT
Statistics
Matches: 93, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
26 16 0.17
27 77 0.83
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:60417866 original size:54 final size:54
Alignment explanation
Indices: 60417773--60417920 Score: 199
Period size: 54 Copynumber: 2.8 Consensus size: 54
60417763 GGGTATTTTA
* ** *
60417773 GTAATTTTGTAAATCGA-GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
* *
60417826 GTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACT
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
*** *
60417880 GTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTATAAAT
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAAT
60417921 TGAGAACATT
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 15 0.18
54 68 0.82
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:60417910 original size:81 final size:80
Alignment explanation
Indices: 60417773--60417924 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 80
60417763 GGGTATTTTA
* * *
60417773 GTAATTTTGTAAATCGAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAA
1 GTAATTCTATAAATCGAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAA
60417838 ATTGAGGGTAAAATG
66 ATTGAGGGTAAAATG
* **** *
60417853 GTAATTCTATAAATCGAGGGTAAAACTGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTATA
1 GTAATTCTATAAATCGA-GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
60417918 AATTGAG
65 AATTGAG
60417925 AACATTTTAG
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
80 15 0.24
81 47 0.76
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (80 bp):
GTAATTCTATAAATCGAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAA
ATTGAGGGTAAAATG
Found at i:60417920 original size:27 final size:27
Alignment explanation
Indices: 60417743--60417912 Score: 155
Period size: 27 Copynumber: 6.3 Consensus size: 27
60417733 TAGGGGTATT
* * * **
60417743 TTGGTAATTTTGTAAACCAAGGGTATT
1 TTGGTAATTCTGTAAATCGAGGGTAAA
* *
60417770 TTAGTAATTTTGTAAATCGA-GGTAAA
1 TTGGTAATTCTGTAAATCGAGGGTAAA
***
60417796 ACAGTAATTCTGTAAATCGAGGGTAAA
1 TTGGTAATTCTGTAAATCGAGGGTAAA
** *
60417823 ACGGTAATTCTGTAAATTGAGGGTAAA
1 TTGGTAATTCTGTAAATCGAGGGTAAA
* *
60417850 ATGGTAATTCTATAAATCGAGGGTAAAA
1 TTGGTAATTCTGTAAATCGAGGGT-AAA
* **
60417878 CT-GTAATTCTGTAAATCGAGGGTACT
1 TTGGTAATTCTGTAAATCGAGGGTAAA
60417904 TTGGTAATT
1 TTGGTAATT
60417913 TTATAAATTG
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.19
27 95 0.78
28 4 0.03
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.34
Consensus pattern (27 bp):
TTGGTAATTCTGTAAATCGAGGGTAAA
Found at i:60417938 original size:81 final size:80
Alignment explanation
Indices: 60417767--60417939 Score: 193
Period size: 81 Copynumber: 2.1 Consensus size: 80
60417757 AACCAAGGGT
* *
60417767 ATTTTAGTAATTTTGTAAATCGAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATT
1 ATTTTAGTAATTCTATAAATCGAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATT
* ***
60417832 CTGTAAATTGAGGGT
66 CTATAAATTGAGAAC
*** * * ****
60417847 AAAATGGTAATTCTATAAATCGAGGGTAAAACTGTAATTCTGTAAATCGAGGGTACTTTGGTAAT
1 ATTTTAGTAATTCTATAAATCGA-GGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAAT
*
60417912 TTTATAAATTGAGAAC
65 TCTATAAATTGAGAAC
60417928 ATTTTAGTAATT
1 ATTTTAGTAATT
60417940 TGGTAAACTA
Statistics
Matches: 72, Mismatches: 20, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
80 17 0.24
81 55 0.76
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (80 bp):
ATTTTAGTAATTCTATAAATCGAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATT
CTATAAATTGAGAAC
Found at i:60421658 original size:26 final size:24
Alignment explanation
Indices: 60421629--60421677 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
60421619 TTATTATAAT
60421629 GAATTAACATTGGCACTATGTGTGCG
1 GAATTAA-A-TGGCACTATGTGTGCG
* *
60421655 GAATTAAATGTCACTTTGTGTGC
1 GAATTAAATGGCACTATGTGTGC
60421678 AGATTTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 13 0.62
25 1 0.05
26 7 0.33
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (24 bp):
GAATTAAATGGCACTATGTGTGCG
Found at i:60421751 original size:94 final size:94
Alignment explanation
Indices: 60421602--60421956 Score: 674
Period size: 94 Copynumber: 3.8 Consensus size: 94
60421592 TATGTTAATT
* * *
60421602 GAAGTAAGTTAATTGCCTTATTATAATGAATTAACATTGGCACTATGTGTGCGGAATTAAATGTC
1 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAGCATTGCCACTATGTGTGCGGAATTAAATGTC
60421667 ACTTTGTGTGCAGATTTTATATGCTATTC
66 ACTTTGTGTGCAGATTTTATATGCTATTC
60421696 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAGCATTGCCACTATGTGTGCGGAATTAAATGTC
1 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAGCATTGCCACTATGTGTGCGGAATTAAATGTC
60421761 ACTTTGTGTGCAGATTTTATATGCTATTC
66 ACTTTGTGTGCAGATTTTATATGCTATTC
60421790 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAGCATTGCCACTATGTGTGCGGAATTAAATGTC
1 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAGCATTGCCACTATGTGTGCGGAATTAAATGTC
60421855 ACTTTGTGTGCAGATTTTATATGCTATTC
66 ACTTTGTGTGCAGATTTTATATGCTATTC
60421884 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAGCATTGCCACTATGTGTGCGGAATTAAATGTC
1 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAGCATTGCCACTATGTGTGCGGAATTAAATGTC
*
60421949 ACGTTGTG
66 ACTTTGTG
60421957 ACATCCCAAA
Statistics
Matches: 257, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 257 1.00
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (94 bp):
GAAGTAAGTTAATTGCCTTATTATAATGAGTTAGCATTGCCACTATGTGTGCGGAATTAAATGTC
ACTTTGTGTGCAGATTTTATATGCTATTC
Found at i:60423863 original size:40 final size:40
Alignment explanation
Indices: 60423695--60423868 Score: 162
Period size: 40 Copynumber: 4.4 Consensus size: 40
60423685 GAGCATTTGA
* * *
60423695 ATCATATCCGGGCTAAGTCCCGAAGGCATTTAT-CTAGTG
1 ATCATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
*
60423734 ATTATATCCGGGCTAAGACCCGAAGGC-ATTCGTG-TGAGTTG
1 ATCATATCCGGGCTAAGACCCGAAGGCAATT-GTGCT-AG-TG
* *
60423775 -TCATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-
1 ATCATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TG
* * * *
60423814 ACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTG
1 ATCATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
* *
60423854 GTTATATCC-GGCTAA
1 ATCATATCCGGGCTAA
60423869 ATTCCGAAGA
Statistics
Matches: 108, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
38 2 0.02
39 33 0.31
40 69 0.64
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
ATCATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTG
Found at i:60425355 original size:24 final size:24
Alignment explanation
Indices: 60425323--60425386 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
60425313 GAAAATTTTA
* *
60425323 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
60425347 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
60425371 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
60425387 ATTCGGGTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:60430950 original size:29 final size:29
Alignment explanation
Indices: 60430918--60430990 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
60430908 CTTCGAGCTC
*
60430918 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
60430947 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
60430976 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
60430991 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:60441463 original size:29 final size:29
Alignment explanation
Indices: 60441431--60441503 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
60441421 CTTCGAGCTC
*
60441431 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
60441460 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
60441489 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
60441504 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:60454604 original size:94 final size:94
Alignment explanation
Indices: 60454352--60454591 Score: 435
Period size: 94 Copynumber: 2.6 Consensus size: 94
60454342 TATGTTAATT
*
60454352 GAAGTAAGTTAATTGCCTTATTATAATGAATTAACATTGGCACTATGTGTGCGGAATTAAATGTC
1 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGAATTAAATGTC
*
60454417 ACTTTGTGTGGAGATTTTATATGCTATTC
66 ACTTTGTGTGCAGATTTTATATGCTATTC
* *
60454446 GAAGTAAGTTAATTGCCGTATTATAATGAGTTAGCATTGGCACTATGTGTGCGGAATTAAATGTC
1 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGAATTAAATGTC
*
60454511 ACTTTGTGTGCCGATTTTATATGCTATTC
66 ACTTTGTGTGCAGATTTTATATGCTATTC
60454540 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
1 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
60454592 AGATTTGAAT
Statistics
Matches: 139, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 139 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (94 bp):
GAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGAATTAAATGTC
ACTTTGTGTGCAGATTTTATATGCTATTC
Found at i:60454658 original size:24 final size:24
Alignment explanation
Indices: 60454626--60454689 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
60454616 GAAAATTTTA
* *
60454626 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
60454650 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
60454674 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
60454690 ATTCGGGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:60460836 original size:29 final size:29
Alignment explanation
Indices: 60460777--60460839 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 29
60460767 GTTAATGGTT
*
60460777 AAAATAAATTAAAGAAAGGAATTATAAAA
1 AAAATAAATTAAAGAAAGGAATGATAAAA
* * *
60460806 AAAATAAA-TAAATAAAGGAA-GATGAAT
1 AAAATAAATTAAAGAAAGGAATGATAAAA
60460833 AAAATAA
1 AAAATAA
60460840 GAAAGCAAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 11 0.37
28 11 0.37
29 8 0.27
ACGTcount: A:0.70, C:0.00, G:0.11, T:0.19
Consensus pattern (29 bp):
AAAATAAATTAAAGAAAGGAATGATAAAA
Found at i:60461907 original size:26 final size:24
Alignment explanation
Indices: 60461878--60461926 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
60461868 TTATTATAAT
60461878 GAATTAACATTGGCACTATGTGTGCG
1 GAATTAA-A-TGGCACTATGTGTGCG
* *
60461904 GAATTAAATGTCACTTTGTGTGC
1 GAATTAAATGGCACTATGTGTGC
60461927 CGACTTTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 13 0.62
25 1 0.05
26 7 0.33
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (24 bp):
GAATTAAATGGCACTATGTGTGCG
Found at i:60462103 original size:94 final size:94
Alignment explanation
Indices: 60461851--60462090 Score: 444
Period size: 94 Copynumber: 2.6 Consensus size: 94
60461841 TATGTTAATT
*
60461851 GAAGTAAGTTAATTGCCTTATTATAATGAATTAACATTGGCACTATGTGTGCGGAATTAAATGTC
1 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGAATTAAATGTC
*
60461916 ACTTTGTGTGCCGACTTTATATGCTATTC
66 ACTTTGTGTGCAGACTTTATATGCTATTC
*
60461945 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAGCATTGGCACTATGTGTGCGGAATTAAATGTC
1 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGAATTAAATGTC
*
60462010 ACTTTGTGTGCAGATTTTATATGCTATTC
66 ACTTTGTGTGCAGACTTTATATGCTATTC
60462039 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
1 GAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
60462091 AGATTTGAAT
Statistics
Matches: 141, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 141 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.38
Consensus pattern (94 bp):
GAAGTAAGTTAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGAATTAAATGTC
ACTTTGTGTGCAGACTTTATATGCTATTC
Found at i:60462152 original size:24 final size:24
Alignment explanation
Indices: 60462125--60462188 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
60462115 GAAAATTTTG
* *
60462125 GGCACTATGTGTGCGA-TTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
60462149 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
60462173 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
60462189 ATTCGGGTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 32 0.89
25 4 0.11
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:60462784 original size:2 final size:2
Alignment explanation
Indices: 60462777--60462818 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
60462767 TTAATGAATG
60462777 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60462819 GCTTAAGGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60463201 original size:31 final size:31
Alignment explanation
Indices: 60463161--60463275 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
60463151 TTAGTCTTGA
*
60463161 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
60463191 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
60463222 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
60463253 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
60463276 ACTATAAACG
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:60463523 original size:25 final size:25
Alignment explanation
Indices: 60463495--60463564 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
60463485 CTCTTTTAAT
*
60463495 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
60463520 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
60463545 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
60463565 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:60464433 original size:27 final size:27
Alignment explanation
Indices: 60464372--60464434 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
60464362 GGCATATTCA
60464372 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
60464399 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
60464426 TCTTTTTAC
1 TCATTTTAC
60464435 ATATTAGGGG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:60464558 original size:29 final size:27
Alignment explanation
Indices: 60464493--60464745 Score: 131
Period size: 27 Copynumber: 9.3 Consensus size: 27
60464483 ATCTACAAAC
60464493 CAAGGGTATTTCAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
60464520 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
60464549 CAAGGGTATTTTC-GTAATTTTGTAAAT
1 CAAGGGTA-TTTCAGTAATTTTGTAAAT
* * * ** **
60464576 TAGGGGTTTTTTGGTAATTTTAAAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* ****
60464603 TAAGGGTATTTC-GATAATTTCACGAA-
1 CAAGGGTATTTCAG-TAATTTTGTAAAT
* ** **
60464629 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTCAGTAATTTTGTAAAT
* ** *
60464656 CTAGGGGTATTTTGGTAATTTTGTAAAC
1 C-AAGGGTATTTCAGTAATTTTGTAAAT
*
60464684 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
* *** *
60464711 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
60464738 CGAGGGTA
1 CAAGGGTA
60464746 AAATGGTAAT
Statistics
Matches: 181, Mismatches: 32, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
26 7 0.04
27 144 0.80
28 10 0.06
29 15 0.08
30 5 0.03
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:60464685 original size:54 final size:54
Alignment explanation
Indices: 60464474--60464704 Score: 189
Period size: 54 Copynumber: 4.2 Consensus size: 54
60464464 TACAAGGGTG
* * * * * *
60464474 TTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAATCAATGGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACCAGTGGTA
* * * ** * *
60464528 TTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTC-GTAATTTTGTAAATTAGGGGTT
1 TTT-TGGTAA-TTTTACAAACT-AAGGGTA-TTTCGGTAATTTTGTAAACCAGTGGTA
* * * ****
60464584 TTTTGGTAATTTTAAAAATTAAGGGTATTTCGATAATTTCACGAACCAGTGGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACCAGTGGTA
* *
60464638 TTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAG-GGTA
1 TTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACC-AGTGGTA
*
60464692 TTTTAGTAATTTT
1 TTTTGGTAATTTT
60464705 GTAAATCGAG
Statistics
Matches: 138, Mismatches: 32, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
53 4 0.03
54 80 0.58
55 19 0.14
56 31 0.22
57 4 0.03
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (54 bp):
TTTTGGTAATTTTACAAACTAAGGGTATTTCGGTAATTTTGTAAACCAGTGGTA
Found at i:60464689 original size:81 final size:82
Alignment explanation
Indices: 60464466--60464694 Score: 230
Period size: 83 Copynumber: 2.8 Consensus size: 82
60464456 TTTCATCCTA
* * * * * ** *
60464466 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAATCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAATCAAGGGTATTT
* *
60464531 CTATAATTTTTAGAAAG
66 CGATAATTTTCAGAAAG
* ** * * ** *
60464548 TCAAGGGTATTTTCGTAATTTTGTAAATTAGGGGTTTTTTGGTAATTTTAAAAATTAAGGGTATT
1 -CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAATCAAGGGTATT
60464613 TCGATAA-TTTCACG-AA-
65 TCGATAATTTTCA-GAAAG
* *
60464629 CCAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
1 CAAG-GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAATCAAGGGTATT
60464694 T
65 T
60464695 TAGTAATTTT
Statistics
Matches: 116, Mismatches: 28, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
80 3 0.03
81 52 0.45
82 6 0.05
83 55 0.47
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (82 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAATCAAGGGTATTT
CGATAATTTTCAGAAAG
Found at i:60464702 original size:81 final size:80
Alignment explanation
Indices: 60464442--60464703 Score: 224
Period size: 81 Copynumber: 3.2 Consensus size: 80
60464432 TACATATTAG
* ** * * * * * **
60464442 GGGTATTTTAGTCATTTCATCCTACAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAG
1 GGGTATTTTAGTAATTTCA-CGAACAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
60464507 TAATTTTGTAAATCAA
65 TAATTTTGTAAATCAA
* * * ** * *
60464523 TGGTATTTCTA-TAATTTTTA-GAAAGTCAAGGGTATTTTCGTAATTTTGTAAATTAGGGGTTTT
1 GGGTATTT-TAGTAA-TTTCACG-AA--CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATT
** *
60464586 TTGGTAATTTTAAAAATTAA
61 TTGGTAATTTTGTAAATCAA
* *
60464606 GGGTA-TTTCGATAATTTCACGAACCAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GGGTATTTTAG-TAATTTCACGAACAAG-GGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
*
60464670 GTAATTTTGTAAACCAA
64 GTAATTTTGTAAATCAA
60464687 GGGTATTTTAGTAATTT
1 GGGTATTTTAGTAATTT
60464704 TGTAAATCGA
Statistics
Matches: 137, Mismatches: 34, Indels: 20
0.72 0.18 0.10
Matches are distributed among these distances:
80 3 0.02
81 66 0.48
82 18 0.13
83 50 0.36
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (80 bp):
GGGTATTTTAGTAATTTCACGAACAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGT
AATTTTGTAAATCAA
Found at i:60464728 original size:54 final size:53
Alignment explanation
Indices: 60464670--60464790 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 53
60464660 GGGTATTTTG
* *** *
60464670 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAC
1 GTAATTCTGTAAACCAAGGGTAAAATAGTAATTTTGTAAATCGAAGGTAAAAC
* * * *
60464723 AGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAAATTGAAGGTAAAAC
1 -GTAATTCTGTAAACCAAGGGTAAAATAGTAATTTTGTAAATCGAAGGTAAAAC
60464777 GATAATTCTGTAAA
1 G-TAATTCTGTAAA
60464791 TCAATCTATA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.02
54 56 0.98
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.34
Consensus pattern (53 bp):
GTAATTCTGTAAACCAAGGGTAAAATAGTAATTTTGTAAATCGAAGGTAAAAC
Found at i:60464746 original size:27 final size:27
Alignment explanation
Indices: 60464696--60464792 Score: 124
Period size: 27 Copynumber: 3.6 Consensus size: 27
60464686 AGGGTATTTT
*
60464696 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
60464723 AGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
60464750 GGTAATTTTGTAAATTGAAGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
60464777 -GATAATTCTGTAAATC
1 AG-TAATTCTGTAAATC
60464793 AATCTATAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
26 1 0.02
27 59 0.98
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:60464808 original size:66 final size:66
Alignment explanation
Indices: 60464733--60464858 Score: 191
Period size: 66 Copynumber: 1.9 Consensus size: 66
60464723 AGTAATTCTG
* * *
60464733 TAAATCGAGGGTAAAATGGTAATTTTGTAAATTGAA-GGTAAAACGATAATTCTGTAAATCAATC
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAA-TCAAGGGTAAAACGATAATTCTGTAAATCAATC
60464797 TA
65 TA
* *
60464799 TAAATCGAGGGTAAAACGGTACTTCTGTAAATCAAGGGTAAAACGATAATTTTGTAAATC
1 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTCTGTAAATC
60464859 GAGGGTACTT
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
65 3 0.06
66 51 0.94
ACGTcount: A:0.41, C:0.10, G:0.19, T:0.30
Consensus pattern (66 bp):
TAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACGATAATTCTGTAAATCAATCT
A
Found at i:60464829 original size:27 final size:27
Alignment explanation
Indices: 60464799--60464865 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
60464789 AATCAATCTA
* *
60464799 TAAATCGAGGGTAAAACGGTACTTCTG
1 TAAATCGAGGGTAAAACGATAATTCTG
* *
60464826 TAAATCAAGGGTAAAACGATAATTTTG
1 TAAATCGAGGGTAAAACGATAATTCTG
60464853 TAAATCGAGGGTA
1 TAAATCGAGGGTA
60464866 CTTTGGTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGATAATTCTG
Found at i:60470752 original size:46 final size:46
Alignment explanation
Indices: 60470702--60470874 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
60470692 TGGTTGAGCA
60470702 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
60470748 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
60470793 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60470841 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
60470875 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.56
47 29 0.27
48 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60470858 original size:93 final size:93
Alignment explanation
Indices: 60470699--60470869 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
60470689 GGATGGTTGA
* * *
60470699 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
60470764 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
60470792 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
60470857 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60470870 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:60473152 original size:19 final size:19
Alignment explanation
Indices: 60473112--60473159 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
60473102 TGGTGCAGTG
*
60473112 GCAACGACAGTGTGCAATA
1 GCAACGACAGTGTGCAACA
*
60473131 GCAACGAC-GATGTGCAGCA
1 GCAACGACAG-TGTGCAACA
*
60473150 GCAACAACAG
1 GCAACGACAG
60473160 CGATGTGCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 1 0.04
19 22 0.92
20 1 0.04
ACGTcount: A:0.38, C:0.25, G:0.27, T:0.10
Consensus pattern (19 bp):
GCAACGACAGTGTGCAACA
Found at i:60476857 original size:5 final size:5
Alignment explanation
Indices: 60476847--60476944 Score: 78
Period size: 6 Copynumber: 18.8 Consensus size: 5
60476837 TATGTCTTTC
*
60476847 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAT AAAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAAT -AAAAT
*
60476895 AAAAAT AAAAAT AACAT -AAAT AAAAT AAAAT AAAAT AAGAAT -AAAT
1 -AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT
60476941 AAAA
1 AAAA
60476945 AAATAGGAGG
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
3 3 0.04
4 6 0.08
5 32 0.41
6 38 0.48
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:60476882 original size:12 final size:11
Alignment explanation
Indices: 60476847--60476945 Score: 89
Period size: 12 Copynumber: 8.9 Consensus size: 11
60476837 TATGTCTTTC
60476847 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
60476860 AAAATTGAAAT
1 AAAATAAAAAT
60476871 GAAAATAAAAAT
1 -AAAATAAAAAT
60476883 CAAAATAAAAAT
1 -AAAATAAAAAT
60476895 AAAAATAAAAAT
1 -AAAATAAAAAT
*
60476907 AACAT--AAAT
1 AAAATAAAAAT
60476916 AAAAT-AAAAT
1 AAAATAAAAAT
*
60476926 AAAATAAGAAT
1 AAAATAAAAAT
60476937 -AAATAAAAA
1 AAAATAAAAA
60476946 AATAGGAGGA
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
9 8 0.11
10 17 0.23
11 11 0.15
12 32 0.44
13 5 0.07
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:60476917 original size:9 final size:9
Alignment explanation
Indices: 60476848--60476949 Score: 61
Period size: 10 Copynumber: 10.6 Consensus size: 9
60476838 ATGTCTTTCA
60476848 AAATAAAAT
1 AAATAAAAT
60476857 -AATAAAATT
1 AAATAAAA-T
60476866 GAAATGAAAAT
1 -AAAT-AAAAT
60476877 AAAAATCAAAAT
1 --AAAT-AAAAT
60476889 AAA-AATAA-
1 AAATAA-AAT
60476897 AAATAAAAAT
1 AAAT-AAAAT
60476907 AACAT-AAAT
1 AA-ATAAAAT
60476916 AAAATAAAAT
1 -AAATAAAAT
60476926 AAAATAAGAAT
1 -AAATAA-AAT
60476937 AAATAAAA-
1 AAATAAAAT
60476945 AAATA
1 AAATA
60476950 GGAGGATTCA
Statistics
Matches: 78, Mismatches: 2, Indels: 27
0.73 0.02 0.25
Matches are distributed among these distances:
8 17 0.22
9 13 0.17
10 26 0.33
11 9 0.12
12 13 0.17
ACGTcount: A:0.75, C:0.02, G:0.03, T:0.20
Consensus pattern (9 bp):
AAATAAAAT
Found at i:60476938 original size:25 final size:25
Alignment explanation
Indices: 60476847--60476944 Score: 92
Period size: 25 Copynumber: 3.7 Consensus size: 25
60476837 TATGTCTTTC
* *
60476847 AAAATAAAAT-AATAAAATTGAAATG
1 AAAATAAAATAAATAAAA-TAAAATA
60476872 AAAATAAAAATCAAAATAAAAATAAAAATA
1 AAAAT-AAAAT--AAAT-AAAAT-AAAATA
*
60476902 AAAATAACATAAATAAAATAAAAT-
1 AAAATAAAATAAATAAAATAAAATA
60476926 AAAATAAGAATAAATAAAA
1 AAAATAA-AATAAATAAAA
60476945 AAATAGGAGG
Statistics
Matches: 62, Mismatches: 4, Indels: 14
0.77 0.05 0.17
Matches are distributed among these distances:
24 7 0.11
25 20 0.32
26 10 0.16
27 4 0.06
29 8 0.13
30 13 0.21
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19
Consensus pattern (25 bp):
AAAATAAAATAAATAAAATAAAATA
Found at i:60482326 original size:13 final size:13
Alignment explanation
Indices: 60482304--60482336 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
60482294 AAGGGCTTGT
60482304 TTAT-TAAACTAA
1 TTATCTAAACTAA
60482316 TTATCTAAACTAA
1 TTATCTAAACTAA
*
60482329 TTAACTAA
1 TTATCTAA
60482337 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:60488718 original size:2 final size:2
Alignment explanation
Indices: 60488711--60488739 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
60488701 CGGCTCTAGC
60488711 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60488740 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:60489500 original size:41 final size:40
Alignment explanation
Indices: 60489443--60489621 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
60489433 CGAATGGTAT
* * *
60489443 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
60489484 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
60489524 TCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
60489564 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
60489604 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
60489622 ACAATCGAGC
Statistics
Matches: 118, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 90 0.76
41 26 0.22
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:60497597 original size:40 final size:40
Alignment explanation
Indices: 60497503--60497681 Score: 171
Period size: 40 Copynumber: 4.5 Consensus size: 40
60497493 CGAATGGTAT
* * * *
60497503 CCGGGCTAAGTCCCCAAGGCTTTTGTGCTAAGTGACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAAA
* * *
60497544 CTGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAA
* * * * *
60497584 CCGGGTTAGGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAA
* * * * * *
60497624 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAA
60497664 CCGGGC-AATGTCCCGAAG
1 CCGGGCTAA-GTCCCGAAG
60497682 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 23, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 2 0.02
40 89 0.78
41 23 0.20
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAA
Found at i:60505588 original size:40 final size:40
Alignment explanation
Indices: 60505522--60505786 Score: 290
Period size: 40 Copynumber: 6.7 Consensus size: 40
60505512 CGGATATAAC
* * * * *
60505522 CACTCGCAC-AAGGCCGTCGGGTCTTAGCCCAG-ATATGGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
* * *
60505561 CACTAGCACAAATGTCTTCGGGTCTTAGCCCGG-ATATAG-
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
60505600 CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
1 C-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* * * *
60505641 AACTCGCACCAATGCCTTCGGGAGTTGGCCCGGAATTAGT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
*
60505681 -ATCTCGCACAATTGCCTTCGGGACTTAGCCCGG-ATGTAGT
1 CA-CTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT
* *
60505721 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAAT
1 CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
* *
60505761 CACTAGCACAAATGTCTTCGGGACTT
1 CACTCGCACAAATGCCTTCGGGACTT
60505787 GACCCCGTTA
Statistics
Matches: 196, Mismatches: 22, Indels: 15
0.84 0.09 0.06
Matches are distributed among these distances:
39 12 0.06
40 179 0.91
41 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
Found at i:60505709 original size:120 final size:120
Alignment explanation
Indices: 60505566--60505783 Score: 346
Period size: 120 Copynumber: 1.8 Consensus size: 120
60505556 ATGGTCACTA
* *
60505566 GCACAAATGTCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
60505631 CGGAATTAGTAACTCGCACCAATGCCTTCGGGAGTTGGCCCGGAATTAGTATCTC
66 CGGAATTAATAACTAGCACAAATGCCTTCGGGAGTTGGCCCGGAATTAGTATCTC
* * *
60505686 GCACAATTGCCTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
60505751 CGGAATTAATCACTAGCACAAATGTCTTCGGGA
66 CGGAATTAATAACTAGCACAAATGCCTTCGGGA
60505784 CTTGACCCCG
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
120 88 1.00
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (120 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCC
CGGAATTAATAACTAGCACAAATGCCTTCGGGAGTTGGCCCGGAATTAGTATCTC
Found at i:60512589 original size:39 final size:39
Alignment explanation
Indices: 60512517--60512800 Score: 231
Period size: 40 Copynumber: 7.2 Consensus size: 39
60512507 ACCCAAGTAT
* *
60512517 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATAT-AGCACTCGCACAAATGC
* * * *
60512555 CGTCGGGTCTTAGCCCGGATATGGTCACTAGCACAAATGT
1 CTTCGGGTCTTAGCCCGGATATAG-CACTCGCACAAATGC
60512595 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGC-ACTCGCACAAATGC
* * * *
60512635 CTTCGGGACTTAGCCCGGA-ATTAGTAACTCACACCAATGC
1 CTTCGGGTCTTAGCCCGGATA-TAG-CACTCGCACAAATGC
* * * *
60512675 CTTCGGGACTTGGCCCGGA-ATTAGTA-TCTGCACAATTGC
1 CTTCGGGTCTTAGCCCGGATA-TAGCACTC-GCACAAATGC
* * *
60512714 CTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAG-CACTCGCACAAATGC
* * * *
60512754 CTTCGGGACTTAGCCCGGA-ATTAATCACTAGCACAAATGT
1 CTTCGGGTCTTAGCCCGGATA-T-AGCACTCGCACAAATGC
60512794 CTTCGGG
1 CTTCGGG
60512801 ACTTGACCCC
Statistics
Matches: 205, Mismatches: 28, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
37 1 0.00
38 12 0.06
39 47 0.23
40 142 0.69
41 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (39 bp):
CTTCGGGTCTTAGCCCGGATATAGCACTCGCACAAATGC
Found at i:60512610 original size:40 final size:40
Alignment explanation
Indices: 60512557--60512804 Score: 276
Period size: 40 Copynumber: 6.2 Consensus size: 40
60512547 CACAAGGCCG
* * *
60512557 TCGGGTCTTAGCCCGG-ATATGGTCACTAGCACAAATGTCT
1 TCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAATGCCT
* *
60512597 TCGGGTCTTAGCCCGG-ATATAG-CAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTC-ACTAGCACAAATGCCT
* *
60512637 TCGGGACTTAGCCCGGAATTAGTAACTCA-CACCAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTCACT-AGCACAAATGCCT
* *
60512677 TCGGGACTTGGCCCGGAATTAGT-ATCT-GCACAATTGCCT
1 TCGGGACTTAGCCCGGAATTAGTCA-CTAGCACAAATGCCT
* *
60512716 TCGGGACTTAGCCCGG-ATGTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTCACTAGCACAAATGCCT
* *
60512756 TCGGGACTTAGCCCGGAATTAATCACTAGCACAAATGTCT
1 TCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATGCCT
60512796 TCGGGACTT
1 TCGGGACTT
60512805 GACCCCGTTA
Statistics
Matches: 182, Mismatches: 16, Indels: 20
0.83 0.07 0.09
Matches are distributed among these distances:
38 2 0.01
39 32 0.18
40 144 0.79
41 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATGCCT
Found at i:60512727 original size:119 final size:119
Alignment explanation
Indices: 60512585--60512805 Score: 345
Period size: 119 Copynumber: 1.9 Consensus size: 119
60512575 ATGGTCACTA
* *
60512585 GCACAAATGTCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
60512650 CGGAATTAGTAACTCA-CACCAATGCCTTCGGGACTTGGCCCGGAATTAGTATCT
66 CGGAATTAATAACT-AGCACAAATGCCTTCGGGACTTGGCCCGGAATTAGTATCT
* * *
60512704 GCACAATTGCCTTCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
60512769 CGGAATTAATCACTAGCACAAATGTCTTCGGGACTTG
66 CGGAATTAATAACTAGCACAAATGCCTTCGGGACTTG
60512806 ACCCCGTTAG
Statistics
Matches: 92, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
118 1 0.01
119 91 0.99
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (119 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCC
CGGAATTAATAACTAGCACAAATGCCTTCGGGACTTGGCCCGGAATTAGTATCT
Found at i:60512729 original size:79 final size:79
Alignment explanation
Indices: 60512557--60512804 Score: 288
Period size: 79 Copynumber: 3.1 Consensus size: 79
60512547 CACAAGGCCG
* * * * * *
60512557 TCGGGTCTTAGCCCGGATATGGTCACT-AGCACAAATGTCTTCGGGTCTTAGCCCGG-ATATAGC
1 TCGGGACTTAGCCCGGATGTAGTAACTCA-CACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG-
* *
60512620 AACTCGCACAAATGCCT
63 TACTAGCACAAATGCCT
* *
60512637 TCGGGACTTAGCCCGGAAT-TAGTAACTCACACCAATGCCTTCGGGACTTGGCCCGGAATTAGTA
1 TCGGGACTTAGCCCGG-ATGTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
60512701 TCT-GCACAATTGCCT
65 -CTAGCACAAATGCCT
* *
60512716 TCGGGACTTAGCCCGGATGTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAATCA
1 TCGGGACTTAGCCCGGATGTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGT-A
*
60512781 CTAGCACAAATGTCT
65 CTAGCACAAATGCCT
60512796 TCGGGACTT
1 TCGGGACTT
60512805 GACCCCGTTA
Statistics
Matches: 146, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.01
79 70 0.48
80 69 0.47
81 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (79 bp):
TCGGGACTTAGCCCGGATGTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAC
TAGCACAAATGCCT
Found at i:60524189 original size:16 final size:16
Alignment explanation
Indices: 60524164--60524194 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60524154 GTGAAAACTA
*
60524164 GAGGGTATACTGACTG
1 GAGGGCATACTGACTG
60524180 GAGGGCATACTGACT
1 GAGGGCATACTGACT
60524195 TCTGCCACAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.16, G:0.35, T:0.23
Consensus pattern (16 bp):
GAGGGCATACTGACTG
Done.