Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 199 of 425
Found at i:60531404 original size:48 final size:48
Alignment explanation
Indices: 60531346--60531841 Score: 382
Period size: 48 Copynumber: 10.3 Consensus size: 48
60531336 CCATGGCCCC
60531346 GACATGGTCTTACA-TGAATCCAC-T-TATCATCGCCGATGCCACGTCCCA
1 GACATGGTCTTACACTG---CCACATATATCATCGCCGATGCCACGTCCCA
* ** *
60531394 GACATGGTCTTACACTGGCACATATATCATCGTTGATGCCATGTCCCA
1 GACATGGTCTTACACTGCCACATATATCATCGCCGATGCCACGTCCCA
* * * * *
60531442 AACATGGTCTTACACTAG-CACATATATCACCACTGATGCCATGTCCCA
1 GACATGGTCTTACACT-GCCACATATATCATCGCCGATGCCACGTCCCA
* * * *
60531490 AACATGGTCTTACACTAG-CACATATATCATCGTCGATGTCATGTCCCA
1 GACATGGTCTTACACT-GCCACATATATCATCGCCGATGCCACGTCCCA
* * * * *
60531538 AACATGGTCTTACACTGGCACATATATCATCACCGATACCATGTCCCA
1 GACATGGTCTTACACTGCCACATATATCATCGCCGATGCCACGTCCCA
* * * * * * *
60531586 AATATGGTCTTACACTGGCACATATATCACCACCGATGCTATGTCCCA
1 GACATGGTCTTACACTGCCACATATATCATCGCCGATGCCACGTCCCA
* * * * *
60531634 AATATGGTCTTACACTAG-CACATATATCATTGCCGATGTCATGTCCCA
1 GACATGGTCTTACACT-GCCACATATATCATCGCCGATGCCACGTCCCA
* * * * * * *
60531682 GACTTGGTCCTACACTGGCACATACATTATCACCGATGCCATGTCCCA
1 GACATGGTCTTACACTGCCACATATATCATCGCCGATGCCACGTCCCA
* * * * * *
60531730 AACATGGTCTTACATTG--ACATACATACTATCACCGATGCCATGTCCTA
1 GACATGGTCTTACACTGCCACATATAT-C-ATCGCCGATGCCACGTCCCA
** * * * *
60531778 GACACAGTCTTACACAAG-CACATATCTCGGAT-GCAGATGCCATGTCCCA
1 GACATGGTCTTACAC-TGCCACATATATC--ATCGCCGATGCCACGTCCCA
60531827 GACATGGTCTTACAC
1 GACATGGTCTTACAC
60531842 GGAATCTCAT
Statistics
Matches: 382, Mismatches: 54, Indels: 23
0.83 0.12 0.05
Matches are distributed among these distances:
46 11 0.03
47 3 0.01
48 327 0.86
49 33 0.09
50 8 0.02
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (48 bp):
GACATGGTCTTACACTGCCACATATATCATCGCCGATGCCACGTCCCA
Found at i:60531497 original size:96 final size:96
Alignment explanation
Indices: 60531370--60531841 Score: 563
Period size: 96 Copynumber: 4.9 Consensus size: 96
60531360 TGAATCCACT
* * **
60531370 TATCATCGCCGATGCCACGTCCCAGACATGGTCTTACACTGGCACATATATCATCGTTGATGCCA
1 TATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCGATGCCA
60531435 TGTCCCAAACATGGTCTTACACTAGCACATA
66 TGTCCCAAACATGGTCTTACACTAGCACATA
* * * * * *
60531466 TATCACCACTGATGCCATGTCCCAAACATGGTCTTACACTAGCACATATATCATCGTCGATGTCA
1 TATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCGATGCCA
*
60531531 TGTCCCAAACATGGTCTTACACTGGCACATA
66 TGTCCCAAACATGGTCTTACACTAGCACATA
* * * * * *
60531562 TATCATCACCGATACCATGTCCCAAATATGGTCTTACACTGGCACATATATCACCACCGATGCTA
1 TATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCGATGCCA
*
60531627 TGTCCCAAATATGGTCTTACACTAGCACATA
66 TGTCCCAAACATGGTCTTACACTAGCACATA
** * * * * * *
60531658 TATCATTGCCGATGTCATGTCCCAGACTTGGTCCTACACTGGCACATACATTATCACCGATGCCA
1 TATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCGATGCCA
*
60531723 TGTCCCAAACATGGTCTTACA-TTG-ACATA
66 TGTCCCAAACATGGTCTTACACTAGCACATA
* * ** ** * *
60531752 CATACTATCACCGATGCCATGTCCTAGACACAGTCTTACACAAGCACATATCTCGGAT-GCAGAT
1 TAT-C-ATCACCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATC--ATCGCCGAT
*
60531816 GCCATGTCCCAGACATGGTCTTACAC
62 GCCATGTCCCAAACATGGTCTTACAC
60531842 GGAATCTCAT
Statistics
Matches: 319, Mismatches: 52, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
94 7 0.02
95 3 0.01
96 279 0.87
97 28 0.09
98 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (96 bp):
TATCATCACCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCGATGCCA
TGTCCCAAACATGGTCTTACACTAGCACATA
Found at i:60531593 original size:144 final size:144
Alignment explanation
Indices: 60531370--60531841 Score: 626
Period size: 144 Copynumber: 3.3 Consensus size: 144
60531360 TGAATCCACT
* ***
60531370 TATCATCGCCGATGCCACGTCCCAGACATGGTCTTACACTGGCACATATATCATCGTTGATGCCA
1 TATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCACCGATGCCA
*
60531435 TGTCCCAAACATGGTCTTACACTAGCACATATATCACCACTGATGCCATGTCCCAAACATGGTCT
66 TGTCCCAAACATGGTCTTACACTAGCACATATATCACCACCGATGCCATGTCCCAAACATGGTCT
60531500 TACACTAGCACATA
131 TACACTAGCACATA
* * * *
60531514 TATCATCGTCGATGTCATGTCCCAAACATGGTCTTACACTGGCACATATATCATCACCGATACCA
1 TATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCACCGATGCCA
* * * *
60531579 TGTCCCAAATATGGTCTTACACTGGCACATATATCACCACCGATGCTATGTCCCAAATATGGTCT
66 TGTCCCAAACATGGTCTTACACTAGCACATATATCACCACCGATGCCATGTCCCAAACATGGTCT
60531644 TACACTAGCACATA
131 TACACTAGCACATA
* * * * * *
60531658 TATCATTGCCGATGTCATGTCCCAGACTTGGTCCTACACTGGCACATACATTATCACCGATGCCA
1 TATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCACCGATGCCA
* * * * * **
60531723 TGTCCCAAACATGGTCTTACA-TTG-ACATACATACTATCACCGATGCCATGTCCTAGACACAGT
66 TGTCCCAAACATGGTCTTACACTAGCACATATAT-C-ACCACCGATGCCATGTCCCAAACATGGT
*
60531786 CTTACACAAGCACATA
129 CTTACACTAGCACATA
* *
60531802 TCTCGGAT-GCAGATGCCATGTCCCAGACATGGTCTTACAC
1 TATC--ATCGCCGATGCCATGTCCCAGACATGGTCTTACAC
60531842 GGAATCTCAT
Statistics
Matches: 287, Mismatches: 37, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
142 7 0.02
143 3 0.01
144 247 0.86
145 28 0.10
146 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (144 bp):
TATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCACCGATGCCA
TGTCCCAAACATGGTCTTACACTAGCACATATATCACCACCGATGCCATGTCCCAAACATGGTCT
TACACTAGCACATA
Found at i:60541188 original size:21 final size:21
Alignment explanation
Indices: 60541159--60541204 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
60541149 AGAATCCCTT
60541159 CATA-AAAGTTGTTTACTACA
1 CATATAAAGTTGTTTACTACA
*
60541179 CATATAAAGTTGTTTATTACA
1 CATATAAAGTTGTTTACTACA
60541200 CATAT
1 CATAT
60541205 TCTTCCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 20 0.83
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (21 bp):
CATATAAAGTTGTTTACTACA
Found at i:60551523 original size:18 final size:18
Alignment explanation
Indices: 60551502--60551543 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
60551492 ATTAATTAAG
*
60551502 GACTATGATCTGATTATC
1 GACTATGATCTAATTATC
60551520 GACTATGATCTAATTATC
1 GACTATGATCTAATTATC
*
60551538 AACTAT
1 GACTAT
60551544 CACCCGGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (18 bp):
GACTATGATCTAATTATC
Found at i:60554839 original size:41 final size:41
Alignment explanation
Indices: 60554782--60554866 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
60554772 GTTTGTGTAA
60554782 ATGAGATGTTGAATGATGAGCTCATCTAGTTAAATTATATG
1 ATGAGATGTTGAATGATGAGCTCATCTAGTTAAATTATATG
*
60554823 ATGAGATGTTGAATGATGAGCTTATCTAGTTAAATTATATG
1 ATGAGATGTTGAATGATGAGCTCATCTAGTTAAATTATATG
60554864 ATG
1 ATG
60554867 CTTGATTATG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (41 bp):
ATGAGATGTTGAATGATGAGCTCATCTAGTTAAATTATATG
Found at i:60557078 original size:37 final size:37
Alignment explanation
Indices: 60557028--60557101 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
60557018 TTTGTTAATG
*
60557028 AGAGGTCCTTATGTGGATATTAAGTCATTCACATGGA
1 AGAGGTCCTTATGTGGATATTAAGCCATTCACATGGA
60557065 AGAGGTCCTTATGTGGATATTAAGCCATTCACATGGA
1 AGAGGTCCTTATGTGGATATTAAGCCATTCACATGGA
60557102 TGATGGACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (37 bp):
AGAGGTCCTTATGTGGATATTAAGCCATTCACATGGA
Found at i:60563272 original size:19 final size:18
Alignment explanation
Indices: 60563248--60563283 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
60563238 TGGACACAAG
*
60563248 GACACACCTGTGTGCCCTT
1 GACACACCCGTGT-CCCTT
60563267 GACACACCCGTGTCCCT
1 GACACACCCGTGTCCCT
60563284 AGGCCGTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.17, C:0.42, G:0.19, T:0.22
Consensus pattern (18 bp):
GACACACCCGTGTCCCTT
Found at i:60564615 original size:48 final size:49
Alignment explanation
Indices: 60564542--60564954 Score: 363
Period size: 48 Copynumber: 8.6 Consensus size: 49
60564532 TAAAGTACCA
* * * * *
60564542 ATGCCATGTCCCCGACATGGCCTTACA-TGAATCCACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAAGCCATATATCATCACCG
* *
60564590 ATGCCATGTCCCTGACATGGTCTTACACTG--GCACATATATCATCACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAAGC-CATATATCATCACCG
**
60564638 ATGCCATGTCCCAGACATGGTCTTACACTG--GCACATATATCATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAAGC-CATATATCATCACCG
* * * * *
60564686 ATGCCGTGTCCCATACATGGCCTTACATTG--GCACATATATCATTACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAAGC-CATATATCATCACCG
* * * *
60564734 ATGCCATGTCCCAAACATGGTCTTACACTG--GCACATACATTATCACAG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAAGC-CATATATCATCACCG
* * * * *
60564782 ATGCCGTGTCCCATACATGGTCTTACACTG--GCAAATTTATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAAGC-CATATATCATCACCG
* *
60564830 ATGCCATGTCCCAGACATGGTCTTACACTG--GCACATACATTATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGAAGC-CATATATCATCACCG
* * * * *
60564878 AAGCCATGTCCCAGACATGGTCTTACA-T-AGGCACATATCTCAAAT-TCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGAAGC-CATATATC--ATCACCG
60564927 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
60564955 GGAATCTCAT
Statistics
Matches: 311, Mismatches: 47, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
47 2 0.01
48 277 0.89
49 30 0.10
50 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGAAGCCATATATCATCACCG
Found at i:60564711 original size:96 final size:96
Alignment explanation
Indices: 60564542--60564954 Score: 496
Period size: 96 Copynumber: 4.3 Consensus size: 96
60564532 TAAAGTACCA
* * *
60564542 ATGCCATGTCCCCGACATGGCCTTACA-TGAATCCACAT--ATCATCGCCGATGCCATGTCCC-T
1 ATGCCATGTCCCAGACATGGTCTTACACTG---GCACATACATCATCGCCGATGCCATGTCCCAT
*
60564603 GACATGGTCTTACACTGGCACATATATCATCACTG
63 -ACATGGTCTTACACTGGCACATATATCATCACCG
* * *
60564638 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGTCGATGCCGTGTCCCATACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATACATCATCGCCGATGCCATGTCCCATACA
* * *
60564703 TGGCCTTACATTGGCACATATATCATTACCG
66 TGGTCTTACACTGGCACATATATCATCACCG
* * * * *
60564734 ATGCCATGTCCCAAACATGGTCTTACACTGGCACATACATTATCACAGATGCCGTGTCCCATACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATACATCATCGCCGATGCCATGTCCCATACA
* * *
60564799 TGGTCTTACACTGGCAAATTTATCATCGCCG
66 TGGTCTTACACTGGCACATATATCATCACCG
* * * *
60564830 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATACATTATCACCGAAGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATACATCATCGCCGATGCCATGTCCCATACA
* * *
60564895 TGGTCTTACA-TAGGCACATATCTCAAAT-TCCA
66 TGGTCTTACACT-GGCACATATATC--ATCACCG
60564927 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
60564955 GGAATCTCAT
Statistics
Matches: 279, Mismatches: 31, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
94 5 0.02
95 1 0.00
96 238 0.85
97 33 0.12
98 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATACATCATCGCCGATGCCATGTCCCATACA
TGGTCTTACACTGGCACATATATCATCACCG
Found at i:60564802 original size:144 final size:144
Alignment explanation
Indices: 60564542--60564954 Score: 523
Period size: 144 Copynumber: 2.9 Consensus size: 144
60564532 TAAAGTACCA
* * * * *
60564542 ATGCCATGTCCCCGACATGGCCTTACA-T-GAATCCACATATCATCGCCGATGCCATGTCCCTGA
1 ATGCCATGTCCCAGACATGGCCTTACACTGGCA--CATATATCATCACCGATGCCATGTCCCAGA
* *
60564605 CATGGTCTTACACTGGCACATATATCATCACTGATGCCATGTCCCAGACATGGTCTTACACTGGC
64 CATGGTCTTACACTGGCACATACATCATCACAGATGCCATGTCCCAGACATGGTCTTACACTGGC
* *
60564670 ACATATATCATCGTCG
129 AAATATATCATCGCCG
* * * * *
60564686 ATGCCGTGTCCCATACATGGCCTTACATTGGCACATATATCATTACCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGCCTTACACTGGCACATATATCATCACCGATGCCATGTCCCAGACA
* * *
60564751 TGGTCTTACACTGGCACATACATTATCACAGATGCCGTGTCCCATACATGGTCTTACACTGGCAA
66 TGGTCTTACACTGGCACATACATCATCACAGATGCCATGTCCCAGACATGGTCTTACACTGGCAA
*
60564816 ATTTATCATCGCCG
131 ATATATCATCGCCG
* * * *
60564830 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATACATTATCACCGAAGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGCCTTACACTGGCACATATATCATCACCGATGCCATGTCCCAGACA
60564895 TGGTCTTACA-TAGGCACATATC-TCAAATTC-CA-ATGCCATGTCCCAGACATGGTCTTACAC
66 TGGTCTTACACT-GGCACATA-CATC--A-TCACAGATGCCATGTCCCAGACATGGTCTTACAC
60564955 GGAATCTCAT
Statistics
Matches: 233, Mismatches: 29, Indels: 13
0.85 0.11 0.05
Matches are distributed among these distances:
143 1 0.00
144 197 0.85
145 28 0.12
146 5 0.02
147 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGCCTTACACTGGCACATATATCATCACCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCACATACATCATCACAGATGCCATGTCCCAGACATGGTCTTACACTGGCAA
ATATATCATCGCCG
Found at i:60575899 original size:40 final size:39
Alignment explanation
Indices: 60575772--60575901 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
60575762 ATGCTGGAAA
*
60575772 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * **
60575812 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
60575852 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
60575892 TTATATCCGG
1 TTATATCCGG
60575902 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:60579860 original size:40 final size:40
Alignment explanation
Indices: 60579763--60579944 Score: 127
Period size: 40 Copynumber: 4.6 Consensus size: 40
60579753 GAATCACGTA
* * *
60579763 CCTTCGGGAT-TTAA-CCGGATATAGCGACTCGCTCGATTG
1 CCTTCGGG-TCTTAACCCGGATATAGTGATTCGCACGATTG
* * * * *
60579802 TCTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTG
1 CCTTCGGGTCTTAACCCGGATATAGTGATTCGCACGATTG
* * * * *
60579842 CCTTCGGGTCTTAACCCGGATTTGGTAACTT-GCACAAATG
1 CCTTCGGGTCTTAACCCGGATATAGTGA-TTCGCACGATTG
* * * * * **
60579882 CCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAATTG
1 CCTTCGGGTCTTAACCCGGATATAGTGATTCGCACGATTG
* *
60579922 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTAACCCGGATAT
60579945 CATTCCAATG
Statistics
Matches: 112, Mismatches: 27, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
39 10 0.09
40 100 0.89
41 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.24, T:0.30
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAGTGATTCGCACGATTG
Found at i:60587866 original size:40 final size:40
Alignment explanation
Indices: 60587783--60587990 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 40
60587773 CGGGATTTAA
* * * * * *
60587783 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACCTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
60587823 CCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAAC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
60587863 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*
60587903 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
*** * * *
60587943 CCGGATATAATTACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAGCAACTCGCACGAA-TGCCTTCGGGTCTTAGC
60587983 CCGGATAT
1 CCGGATAT
60587991 CATTCCAATG
Statistics
Matches: 139, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 2 0.01
40 137 0.99
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:60587903 original size:80 final size:80
Alignment explanation
Indices: 60587809--60587990 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
60587799 GCTCGATTGT
* * *** * * * **
60587809 CTTCGGGACCTAGCCCGGTTATAGTGATTCGCACGATTGCCTTCGGGTCTTAACCCGGATTTGGT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
*
60587874 AACTTGCACAAATGC
66 AACTAGCACAAATGC
* *
60587889 CTTCGGGTCTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
* * *
60587954 TACTAGCATAATTGC
66 AACTAGCACAAATGC
60587969 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
60587991 CATTCCAATG
Statistics
Matches: 85, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 85 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAACCCGGATATAAT
AACTAGCACAAATGC
Found at i:60596258 original size:40 final size:40
Alignment explanation
Indices: 60596199--60596340 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
60596189 AAATTGAATG
* * *
60596199 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
60596239 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
60596279 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
60596319 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
60596341 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:60596341 original size:40 final size:39
Alignment explanation
Indices: 60596238--60596366 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
60596228 TGCTGGAAAT
* * *
60596238 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
60596278 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
60596318 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
60596358 TATATCCGG
1 TATATCCGG
60596367 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:60601880 original size:26 final size:26
Alignment explanation
Indices: 60601830--60601880 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
60601820 GTTAGTACAC
*
60601830 TTGTTCATGATACAAATAAATTCAAA
1 TTGTTCATGATACAAATAAACTCAAA
*
60601856 TTGTTCATGATACAAATGAACTCAA
1 TTGTTCATGATACAAATAAACTCAA
60601881 CCATAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (26 bp):
TTGTTCATGATACAAATAAACTCAAA
Found at i:60606283 original size:24 final size:24
Alignment explanation
Indices: 60606256--60606301 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
60606246 GTGAAACTAC
60606256 AAAGGCTGAAAAGCCGAAAAGTCG
1 AAAGGCTGAAAAGCCGAAAAGTCG
*
60606280 AAAGGCTGAAAAGCTGAAAAGT
1 AAAGGCTGAAAAGCCGAAAAGT
60606302 GGGTTGTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.48, C:0.13, G:0.28, T:0.11
Consensus pattern (24 bp):
AAAGGCTGAAAAGCCGAAAAGTCG
Found at i:60606727 original size:26 final size:27
Alignment explanation
Indices: 60606686--60606746 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
60606676 TGTTTACTTG
*
60606686 AAAATGACTGAGATAC-CCTATAAGGT
1 AAAATGACTGAGATACGCCTATAAGAT
*
60606712 AAAATGACTGTA-ATACGTCTATAAGAT
1 AAAATGACTG-AGATACGCCTATAAGAT
60606739 AAAATGAC
1 AAAATGAC
60606747 GATTTTGCCC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 14 0.45
27 17 0.55
ACGTcount: A:0.46, C:0.13, G:0.16, T:0.25
Consensus pattern (27 bp):
AAAATGACTGAGATACGCCTATAAGAT
Found at i:60606818 original size:27 final size:27
Alignment explanation
Indices: 60606738--60606833 Score: 122
Period size: 27 Copynumber: 3.6 Consensus size: 27
60606728 GTCTATAAGA
* * *
60606738 TAAAATGACGATTTTGCCCTTATGTGG
1 TAAAATGATGATTTTGCCCTTATATGT
*
60606765 AAAAATGACT-ATTTTGCCCTTATATGT
1 TAAAATGA-TGATTTTGCCCTTATATGT
*
60606792 TAAAATGATGATCTTGCCCTTATATGT
1 TAAAATGATGATTTTGCCCTTATATGT
*
60606819 TAAAATGGTGATTTT
1 TAAAATGATGATTTT
60606834 TGTAACATCC
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.02
27 58 0.98
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (27 bp):
TAAAATGATGATTTTGCCCTTATATGT
Found at i:60608655 original size:20 final size:20
Alignment explanation
Indices: 60608632--60608699 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
60608622 ATATTGTATA
*
60608632 CACATGATATGTATAAAATG
1 CACATGATATGTATGAAATG
*
60608652 CACATGATATGTATGATATG
1 CACATGATATGTATGAAATG
60608672 CACATGATATGTATGAAATG
1 CACATGATATGTATGAAATG
60608692 CACATGAT
1 CACATGAT
60608700 GTATTCATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.31
Consensus pattern (20 bp):
CACATGATATGTATGAAATG
Found at i:60608827 original size:52 final size:51
Alignment explanation
Indices: 60608749--60608884 Score: 215
Period size: 52 Copynumber: 2.7 Consensus size: 51
60608739 GAGGAAGTGC
60608749 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
60608801 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
**
60608852 AAATTGGCTT-TGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
60608885 AGGCCTCCAA
Statistics
Matches: 81, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
48 5 0.06
49 9 0.11
50 8 0.10
51 23 0.28
52 36 0.44
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:60608846 original size:25 final size:26
Alignment explanation
Indices: 60608749--60608884 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
60608739 GAGGAAGTGC
60608749 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
60608775 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
60608801 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
60608827 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
60608852 AAATTGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
60608875 AAAAGAGGCT
1 AAAAG-GGCT
60608885 AGGCCTCCAA
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 3 0.03
24 7 0.07
25 29 0.30
26 58 0.60
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:60609513 original size:18 final size:18
Alignment explanation
Indices: 60609490--60609524 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60609480 ACTTAGGACG
*
60609490 TGTTTTCAAAACGACACT
1 TGTTTTCAAAACAACACT
*
60609508 TGTTTTCCAAACAACAC
1 TGTTTTCAAAACAACAC
60609525 AACGGCACAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (18 bp):
TGTTTTCAAAACAACACT
Found at i:60609867 original size:27 final size:27
Alignment explanation
Indices: 60609828--60609953 Score: 146
Period size: 27 Copynumber: 4.7 Consensus size: 27
60609818 GGGTGTTACA
*
60609828 ATTTTGCTCTTATGTGATAAAATGACG
1 ATTTTGCCCTTATGTGATAAAATGACG
* * *
60609855 GTTTTTCCCTTATGTGGA-AAAATGACT
1 ATTTTGCCCTTATGT-GATAAAATGACG
* *
60609882 CTTTTGCCCTTATGTGTTAAAATGACG
1 ATTTTGCCCTTATGTGATAAAATGACG
* * *
60609909 ATTTTGCCCTTGTGTGGTAAAATGATG
1 ATTTTGCCCTTATGTGATAAAATGACG
*
60609936 ATTTTGCCCCTATGTGAT
1 ATTTTGCCCTTATGTGAT
60609954 GTATTGTTTA
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 79 0.96
28 2 0.02
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (27 bp):
ATTTTGCCCTTATGTGATAAAATGACG
Found at i:60609919 original size:54 final size:54
Alignment explanation
Indices: 60609828--60609953 Score: 164
Period size: 54 Copynumber: 2.3 Consensus size: 54
60609818 GGGTGTTACA
* * *
60609828 ATTTTGCTCTTATGTGATAAAATGACGGTTTTTCCCTTATGTGGAAAAATGACT-
1 ATTTTGCCCTTATGTGATAAAATGACGATTTTGCCCTTATGTGGAAAAATGA-TG
* * * *
60609882 CTTTTGCCCTTATGTGTTAAAATGACGATTTTGCCCTTGTGTGGTAAAATGATG
1 ATTTTGCCCTTATGTGATAAAATGACGATTTTGCCCTTATGTGGAAAAATGATG
*
60609936 ATTTTGCCCCTATGTGAT
1 ATTTTGCCCTTATGTGAT
60609954 GTATTGTTTA
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
53 1 0.02
54 60 0.98
ACGTcount: A:0.24, C:0.15, G:0.20, T:0.41
Consensus pattern (54 bp):
ATTTTGCCCTTATGTGATAAAATGACGATTTTGCCCTTATGTGGAAAAATGATG
Found at i:60610284 original size:18 final size:18
Alignment explanation
Indices: 60610242--60610291 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
60610232 CTATTTTCTG
* *
60610242 TTACTGCTATTGCACTGT
1 TTACTGTTATTGTACTGT
60610260 TTACTGTTATTGTACTGT
1 TTACTGTTATTGTACTGT
*
60610278 TTACTGTTACTGTA
1 TTACTGTTATTGTA
60610292 ATGGGCCAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.18, C:0.16, G:0.16, T:0.50
Consensus pattern (18 bp):
TTACTGTTATTGTACTGT
Found at i:60618969 original size:53 final size:53
Alignment explanation
Indices: 60618910--60619015 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 53
60618900 TGGCCGTGTG
60618910 AGACACACAACCAGGCCACACAGGCGTGTGTCCCTTGTATTTTGAAAAATTTT
1 AGACACACAACCAGGCCACACAGGCGTGTGTCCCTTGTATTTTGAAAAATTTT
* * * *
60618963 AGACACACAACCGGGCCATACAGGTGTGTGTCCTTTGTATTTTGAAAAATTTT
1 AGACACACAACCAGGCCACACAGGCGTGTGTCCCTTGTATTTTGAAAAATTTT
60619016 CTAAATTTTC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (53 bp):
AGACACACAACCAGGCCACACAGGCGTGTGTCCCTTGTATTTTGAAAAATTTT
Found at i:60622665 original size:41 final size:41
Alignment explanation
Indices: 60622607--60622754 Score: 176
Period size: 41 Copynumber: 3.6 Consensus size: 41
60622597 GAGATTGGTC
60622607 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* * *
60622648 TCGAAGGGCTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* * * * *
60622688 CCGAAGGGCCTTTGAGCCAGTGATCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGTG--CTAATAACCGAACTTAGTT
*
60622729 TCGAAGGACTTTTGAGCCAGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
60622755 GAATCGGGCT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
39 4 0.04
40 35 0.39
41 48 0.53
43 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:60626765 original size:40 final size:40
Alignment explanation
Indices: 60626720--60626927 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
60626710 CGGAATATAA
* *
60626720 CCGGATATAATCAC-ATGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTA-GCACAATTGCCTTCGGGTCTTAAC
* * *
60626760 CCGGATAGAATAACTCGCACGAA-TGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCAC-AATTGCCTTCGGGTCTTAAC
**
60626800 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAAC
**
60626840 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAAC
** * * * * *
60626880 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAAC
60626920 CCGGATAT
1 CCGGATAT
60626928 CATTCAATTT
Statistics
Matches: 147, Mismatches: 18, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
39 2 0.01
40 143 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAATTGCCTTCGGGTCTTAAC
Found at i:60633131 original size:40 final size:41
Alignment explanation
Indices: 60633051--60633196 Score: 188
Period size: 41 Copynumber: 3.6 Consensus size: 41
60633041 GAGCTTGGTC
*
60633051 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTCATAACCGAACTTAGTT
* * *
60633092 TCGAAGGGCTTTAGAGCCAGT-TTCATAACCGGACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTCATAACCGAACTTAGTT
* * * * *
60633132 CCGAAGGGCCTTTGAGCCAGTGGTC-TAATCCGAACTTGGTC
1 TCGAAGGGCTTTTGAGCCAGTGCTCATAA-CCGAACTTAGTT
60633173 TCGAAGGGCTTTTGAGCCAGTGCT
1 TCGAAGGGCTTTTGAGCCAGTGCT
60633197 AAGAATCGGG
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
40 37 0.42
41 52 0.58
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTCATAACCGAACTTAGTT
Found at i:60637271 original size:50 final size:51
Alignment explanation
Indices: 60637139--60637274 Score: 188
Period size: 50 Copynumber: 2.7 Consensus size: 51
60637129 CTAGTAAGCA
* ** *
60637139 TAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAACAGTCTGGTATACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCAGTCTAATACACG
*
60637188 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCAGTCTAATACACG
**
60637238 TAGTAGCCTGCACTTAGTACTACACATACGACCTCAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTCAC
60637275 AATAGATCAT
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
49 30 0.39
50 43 0.56
51 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCAGTCTAATACACG
Found at i:60650920 original size:34 final size:33
Alignment explanation
Indices: 60650864--60650967 Score: 113
Period size: 34 Copynumber: 3.1 Consensus size: 33
60650854 ATATGCATTT
60650864 CTGATACTG-TACTG-AATTGGGCTAAGGCCCAGA
1 CTGATACTGCTACTGTAA--GGGCTAAGGCCCAGA
* * *
60650897 CTGATACTGCTACTGTAGCGGGCTAAGGCACACA
1 CTGATACTGCTACTGTA-AGGGCTAAGGCCCAGA
* *
60650931 CTGATATTGCTACTGTTAAGGGCTTAGGCCCAGA
1 CTGATACTGCTACTG-TAAGGGCTAAGGCCCAGA
60650965 CTG
1 CTG
60650968 TTTGCACTGC
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
33 9 0.15
34 47 0.80
35 3 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (33 bp):
CTGATACTGCTACTGTAAGGGCTAAGGCCCAGA
Found at i:60655997 original size:20 final size:19
Alignment explanation
Indices: 60655967--60656056 Score: 73
Period size: 20 Copynumber: 4.6 Consensus size: 19
60655957 TATGTTAGAA
60655967 TATTAATTCTATTATATATT
1 TATT-ATTCTATTATATATT
60655987 TATCTATTCTATTATATA--
1 TAT-TATTCTATTATATATT
*
60656005 TA-TATTCTAATATATATT
1 TATTATTCTATTATATATT
60656023 AGTATTATT-T-TTATATTATT
1 --TATTATTCTATTATA-TATT
60656043 TATCTATTTCTATT
1 TAT-TA-TTCTATT
60656057 TCATTTATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 20
0.72 0.03 0.25
Matches are distributed among these distances:
16 13 0.23
18 5 0.09
19 6 0.11
20 25 0.44
21 6 0.11
22 2 0.04
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.60
Consensus pattern (19 bp):
TATTATTCTATTATATATT
Found at i:60656012 original size:16 final size:17
Alignment explanation
Indices: 60655972--60656021 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 17
60655962 TAGAATATTA
60655972 ATTCTATTATATATTTATCT
1 ATTCTATTATATA--TA-CT
60655992 ATTCTATTATATATA-T
1 ATTCTATTATATATACT
*
60656008 ATTCTAATATATAT
1 ATTCTATTATATAT
60656022 TAGTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 14 0.48
18 2 0.07
20 13 0.45
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTCTATTATATATACT
Found at i:60662862 original size:25 final size:25
Alignment explanation
Indices: 60662816--60662865 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
60662806 CAAGCTTTTA
60662816 TTTTTATATTTTCATGATCATTCATT
1 TTTTTATATTTTCATGA-CATTCATT
*
60662842 TTTTTATCTGTTTCATG-CATTCAT
1 TTTTTATAT-TTTCATGACATTCAT
60662866 ATAGCTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 7 0.32
26 8 0.36
27 7 0.32
ACGTcount: A:0.20, C:0.14, G:0.06, T:0.60
Consensus pattern (25 bp):
TTTTTATATTTTCATGACATTCATT
Found at i:60669341 original size:46 final size:46
Alignment explanation
Indices: 60669288--60669463 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
60669278 TATTTGGGCA
60669288 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
60669334 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
60669381 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
60669427 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60669464 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:60669443 original size:93 final size:93
Alignment explanation
Indices: 60669284--60669455 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60669274 GGGATATTTG
* *
60669284 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60669349 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
60669377 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60669442 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
60669456 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:60674545 original size:40 final size:40
Alignment explanation
Indices: 60674460--60674610 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
60674450 AATTGAATGA
* * * **
60674460 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
60674500 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
60674541 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
60674580 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
60674611 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:60674624 original size:40 final size:40
Alignment explanation
Indices: 60674497--60674626 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
60674487 ATGCTGGAAA
* * *
60674497 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
60674537 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
60674577 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
60674617 TTATATCCGG
1 TTATATCCGG
60674627 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:60680864 original size:40 final size:40
Alignment explanation
Indices: 60680779--60680929 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
60680769 AATTGAATGA
* * * **
60680779 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
60680819 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
60680860 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
60680899 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
60680930 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:60680943 original size:40 final size:40
Alignment explanation
Indices: 60680816--60680945 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
60680806 ATGCTGGAAA
* * *
60680816 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
60680856 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
60680896 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
60680936 TTATATCCGG
1 TTATATCCGG
60680946 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:60688891 original size:40 final size:40
Alignment explanation
Indices: 60688806--60688956 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
60688796 AATTGAATGA
* * * **
60688806 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTCA-TAC
* *
60688846 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT--CATAC
*
60688887 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTCATAC
*
60688926 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
60688957 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 5 0.05
40 84 0.91
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTCATAC
Found at i:60688970 original size:40 final size:40
Alignment explanation
Indices: 60688843--60688972 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
60688833 ATGCTGGAAA
* * *
60688843 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
60688883 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
60688923 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
60688963 TTATATCCGG
1 TTATATCCGG
60688973 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:60690229 original size:21 final size:21
Alignment explanation
Indices: 60690200--60690247 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
60690190 AGTTTCCGAG
*
60690200 TTTTGAAACTCGAGATATGAT
1 TTTTAAAACTCGAGATATGAT
60690221 TTTTAAAACTCGAGATATGAT
1 TTTTAAAACTCGAGATATGAT
60690242 TTTTAA
1 TTTTAA
60690248 GGCGACGGTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (21 bp):
TTTTAAAACTCGAGATATGAT
Found at i:60697749 original size:24 final size:24
Alignment explanation
Indices: 60697711--60697758 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
60697701 GGAATATTAC
*
60697711 ATATTATGCTAATAAATACTAAAT
1 ATATTATACTAATAAATACTAAAT
*
60697735 ATATTATACTCATAAATACTAAAT
1 ATATTATACTAATAAATACTAAAT
60697759 CTTCTAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.38
Consensus pattern (24 bp):
ATATTATACTAATAAATACTAAAT
Found at i:60697939 original size:11 final size:10
Alignment explanation
Indices: 60697911--60697944 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
60697901 ACTTGTATAA
60697911 TTTTATTTAT
1 TTTTATTTAT
*
60697921 TCTTATTTCAT
1 TTTTATTT-AT
60697932 TTTTATTTAT
1 TTTTATTTAT
60697942 TTT
1 TTT
60697945 CATGTCCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTATTTAT
Found at i:60701764 original size:27 final size:27
Alignment explanation
Indices: 60701729--60701901 Score: 238
Period size: 27 Copynumber: 6.4 Consensus size: 27
60701719 CCTCAAAATA
* * *
60701729 GGTAAAATGACTGTAATGCCCCTTTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* * *
60701756 GATAAAATGGCCGTAATACCCCTATAG
1 GGTAAAATGACCGTAATACCCCTGTAG
60701783 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
60701810 GGTAAAATAACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
** **
60701837 GGTAAAATGACCGTAATGTCCCTAAAG
1 GGTAAAATGACCGTAATACCCCTGTAG
*
60701864 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
60701891 GGTAAAATGAC
1 GGTAAAATGAC
60701902 TATTATGCCC
Statistics
Matches: 127, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:60707995 original size:22 final size:22
Alignment explanation
Indices: 60707970--60708016 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
60707960 GACGGCTCAG
*
60707970 AGCTGTAGACAGGACAACACAT
1 AGCTGTAAACAGGACAACACAT
*
60707992 AGCTGTAAACAGGACATCACAT
1 AGCTGTAAACAGGACAACACAT
60708014 AGC
1 AGC
60708017 CATAATGTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.15
Consensus pattern (22 bp):
AGCTGTAAACAGGACAACACAT
Found at i:60709831 original size:23 final size:23
Alignment explanation
Indices: 60709805--60709931 Score: 150
Period size: 23 Copynumber: 5.5 Consensus size: 23
60709795 AGTGCCACAT
* * *
60709805 TGTAATATAGCTGAAGCTATCAC
1 TGTAATGTAGCCGAAGCTACCAC
* *
60709828 TGTAACGTAGCCGAAGCTACCAT
1 TGTAATGTAGCCGAAGCTACCAC
*
60709851 TGTATTGTAGCCGAAGCTACCAC
1 TGTAATGTAGCCGAAGCTACCAC
*
60709874 TG-AGATGTAGCCAAAGCTACCAC
1 TGTA-ATGTAGCCGAAGCTACCAC
*
60709897 TGTATTGTAGCCGAAGCTACCAC
1 TGTAATGTAGCCGAAGCTACCAC
60709920 TG-AGATGTAGCC
1 TGTA-ATGTAGCC
60709932 AATAGATTCC
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
22 2 0.02
23 85 0.97
24 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (23 bp):
TGTAATGTAGCCGAAGCTACCAC
Found at i:60709869 original size:46 final size:46
Alignment explanation
Indices: 60709802--60709933 Score: 176
Period size: 46 Copynumber: 2.9 Consensus size: 46
60709792 TAAAGTGCCA
* * * * *
60709802 CATTGTAATATAGCTGAAGCTATCACTGTA-ACGTAGCCGAAGCTAC
1 CATTGTATTGTAGCCGAAGCTACCACTG-AGACGTAGCCAAAGCTAC
*
60709848 CATTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCAAAGCTAC
1 CATTGTATTGTAGCCGAAGCTACCACTGAGACGTAGCCAAAGCTAC
* *
60709894 CACTGTATTGTAGCCGAAGCTACCACTGAGATGTAGCCAA
1 CATTGTATTGTAGCCGAAGCTACCACTGAGACGTAGCCAA
60709934 TAGATTCCTA
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.01
46 77 0.99
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (46 bp):
CATTGTATTGTAGCCGAAGCTACCACTGAGACGTAGCCAAAGCTAC
Found at i:60711503 original size:22 final size:22
Alignment explanation
Indices: 60711475--60711538 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
60711465 GCAAATACGT
60711475 TTGGCACAGAGCCATAATCAAG
1 TTGGCACAGAGCCATAATCAAG
* *
60711497 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAGAGCCATAAT-CAAG
* *
60711519 TTGGCGCAAAGCCATAATCA
1 TTGGCACAGAGCCATAATCA
60711539 GAATAATTGG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAGAGCCATAATCAAG
Found at i:60711742 original size:41 final size:41
Alignment explanation
Indices: 60711681--60711762 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
60711671 TAAAAGCCAC
* *
60711681 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCAACGGTCGTCAAGAAACCATGCGATCCTTAAT
* *
60711722 CGGTGGATCAATGGTTGTCAAGAAACCATGCGATCCTTAAT
1 CGGTGGATCAACGGTCGTCAAGAAACCATGCGATCCTTAAT
60711763 TTCTTCCTCC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (41 bp):
CGGTGGATCAACGGTCGTCAAGAAACCATGCGATCCTTAAT
Found at i:60712050 original size:27 final size:27
Alignment explanation
Indices: 60712008--60712334 Score: 237
Period size: 27 Copynumber: 12.1 Consensus size: 27
60711998 TACAATGGTG
* * *
60712008 TTTTGGTAAATCTACAAACCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* *
60712035 TTTTGGTAATTTTACAAACCAATGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* **
60712062 TTTTTGTAATTTTTGAAAGTCAAGGGTA
1 TTTTGGTAATTTTACAAA-TCAAGGGTA
* ** * *
60712090 TTTTTGTAATTTTGTAAATTAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
60712117 TTTCT-GTAATCTTCCAAATCAAGGATA
1 TTT-TGGTAATTTTACAAATCAAGGGTA
* *
60712144 TTTTGGTAATTTTCCAAATCAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
60712171 TTTTGATAATTTTAAAAATCGAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
*** * *
60712198 TTTCAATAATTTTACAAGTCGAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* *
60712225 TTTTGGTAATTTTATAAGTCGAA-GGTA
1 TTTTGGTAATTTTACAAATC-AAGGGTA
*** * *
60712252 TTTCAATAATTTCACAAATC-AGATGTA
1 TTTTGGTAATTTTACAAATCAAG-GGTA
* * *
60712279 TTTTGTTAATTTTACAAACCATGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* ** *
60712306 TTTTGCTAATTTTGTAAACCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
60712333 TT
1 TT
60712335 CAGTAATTTT
Statistics
Matches: 240, Mismatches: 53, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
25 1 0.00
26 1 0.00
27 212 0.88
28 26 0.11
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.41
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAATCAAGGGTA
Found at i:60712348 original size:26 final size:26
Alignment explanation
Indices: 60712285--60712369 Score: 107
Period size: 27 Copynumber: 3.2 Consensus size: 26
60712275 TGTATTTTGT
** **
60712285 TAATTTTACAAACCATGGGTATTTTG
1 TAATTTTGTAAACCATGGGTATTCAG
*
60712311 CTAATTTTGTAAACCAAGGGTATTCAG
1 -TAATTTTGTAAACCATGGGTATTCAG
60712338 TAATTTTGTAAACCATGGGTATTTCAG
1 TAATTTTGTAAACCATGGGTA-TTCAG
60712365 TAATT
1 TAATT
60712370 CTACCCTACA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
26 20 0.39
27 31 0.61
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (26 bp):
TAATTTTGTAAACCATGGGTATTCAG
Found at i:60712388 original size:27 final size:27
Alignment explanation
Indices: 60712358--60712434 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
60712348 AACCATGGGT
60712358 ATTTCAGTAATTCTACCCTACA-GGAGC
1 ATTTCAGTAATTCTACCCTACAGGGA-C
* *
60712385 ATTTTAGTAATTCTACCCTACAGGGAT
1 ATTTCAGTAATTCTACCCTACAGGGAC
*
60712412 ATTTCAGTAATTCTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
60712435 ATATGAGATT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 42 0.93
28 3 0.07
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGAC
Found at i:60728800 original size:47 final size:48
Alignment explanation
Indices: 60728686--60728816 Score: 201
Period size: 47 Copynumber: 2.8 Consensus size: 48
60728676 GTGCGAATGA
* * * *
60728686 TACCTTGATTTGGCTACGGGCTATGGTATAGGTATTTTAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTAGAGAGAAGT
* *
60728734 TACCTTGATTTGGCTACGGGCCATGGTATATGTACTCT-GAGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTAGAGAGAAGT
60728781 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
60728817 TATCGATTGT
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
47 42 0.55
48 34 0.45
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.34
Consensus pattern (48 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTAGAGAGAAGT
Found at i:60728835 original size:47 final size:47
Alignment explanation
Indices: 60728683--60728835 Score: 156
Period size: 47 Copynumber: 3.2 Consensus size: 47
60728673 TAGGTGCGAA
* * *
60728683 TGATACCTTGATTTGGCTACGGGCTATGGTATAGGTA-TTTTAGAGAG
1 TGATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTAT-GATAG
*
60728730 -GAGTTACCTTGATTTGGCTACGGGCCATGGTATATGTACTCTGA-GATAAG
1 TGA--TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT-T-ATGAT-AG
*
60728780 T--TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTATCGATTG
1 TGATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTAT-GATAG
60728826 TGATA-CTTGA
1 TGATACCTTGA
60728836 GTATCCGACT
Statistics
Matches: 89, Mismatches: 6, Indels: 22
0.76 0.05 0.19
Matches are distributed among these distances:
45 1 0.01
46 5 0.06
47 43 0.48
48 34 0.38
49 3 0.03
50 3 0.03
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.35
Consensus pattern (47 bp):
TGATACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTATGATAG
Found at i:60730530 original size:28 final size:28
Alignment explanation
Indices: 60730465--60730565 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
60730455 ATAGTGGATC
*
60730465 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
60730494 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
60730522 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
60730552 CGCACACTTAGTGC
1 CGCACACTTAGTGC
60730566 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:60732341 original size:14 final size:15
Alignment explanation
Indices: 60732319--60732351 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
60732309 GTATTCACTT
*
60732319 TTCTTTTCTTTTT-C
1 TTCTATTCTTTTTGC
60732333 TTCTATTCTTTTTGC
1 TTCTATTCTTTTTGC
60732348 TTCT
1 TTCT
60732352 TCTTTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.03, C:0.21, G:0.03, T:0.73
Consensus pattern (15 bp):
TTCTATTCTTTTTGC
Found at i:60737709 original size:42 final size:42
Alignment explanation
Indices: 60737647--60738118 Score: 626
Period size: 42 Copynumber: 11.3 Consensus size: 42
60737637 AAGGAAAACA
** *
60737647 TTCATTGCATTTAGAGGCCCAGGCCTAGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
60737689 TTTATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
60737731 TTCATTGCATTTAGAGGCCCAAGTGTGGAGTTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
60737773 TTCATTGCATTTA-AGGGCACATGTGTGGAGATCCATTTACTT
1 TTCATTGCATTTAGA-GGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
60737815 TTTATTGCATTTAGAGGCCTAGGTGTGGAGTTCCATTAACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
60737857 TTCATTGCATTTAGAGGCCCAGGTGTAGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * *
60737899 TTCATTGCATTTAAAGGCCCAGATGTGGAGGTCCACTTGCTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
60737941 TTCATTACATTTAGAGACTCAGGTGTGGA-GTTCATTCA-TT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
** * *
60737981 ATTCATTGCATTTAGAGATCCAGGTGTGGAGGTCTATTGACTT
1 -TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
60738024 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCGTTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
60738066 TTCATTGCATTTAAAGGCTCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
*
60738108 TTCATTTCATT
1 TTCATTGCATT
60738119 GTATATGAAG
Statistics
Matches: 375, Mismatches: 50, Indels: 10
0.86 0.11 0.02
Matches are distributed among these distances:
40 2 0.01
41 32 0.09
42 338 0.90
43 3 0.01
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:60739208 original size:160 final size:150
Alignment explanation
Indices: 60738940--60739320 Score: 485
Period size: 160 Copynumber: 2.5 Consensus size: 150
60738930 TTTTTATTTT
* * *
60738940 TTTTAAAAATAAAAA-CTATTTTTTAGTCATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAGTT
1 TTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAAGGAAATTTTAAATTTTTAAAACAAAATT
** * * *
60739004 TTAATTTTTTTTTCAACTATTTCAAAATATAAGCTTTGATCTTTAAGAAAAATAGTGTTTTCTTT
66 TT--GGTTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATA-----AT-ATT
60739069 TTTTTAAAAAAAAAAAGGAGAAAGTTTAGA
123 TTTTT-AAAAAAAAAA-GAGAAAGTTTAGA
*
60739099 TTTTAAAAAATAAAAATTTATTTTTTTAGTCATTTTAAAGGAAATTTTAAATTTTTAAAACAAAA
1 TTTT-AAAAATAAAAATATA-TTTTTTAGTCATTTTAAAGGAAATTTTAAATTTTTAAAACAAAA
*
60739164 TTTTGGTTTTTTTCAACTATTTCAAAATAAAAGTTTTGATCTTTAAGAAAAATAATATTTTTTTA
64 TTTTGGTTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAATATTTTTTTA
* *
60739229 AAAAAAAAAGATAAATTTTAGA
129 AAAAAAAAAGAGAAAGTTTAGA
* * * *
60739251 TTTTTAAAATAAAAATATATTTTTAAGTCATTTTAAAGGAAAAGTTTGAATTTTTTAAAACAAAA
1 TTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAAGG-AAA-TTTTAAATTTTTAAAACAAAA
60739316 TTTTG
64 TTTTG
60739321 ATAAAGTTTG
Statistics
Matches: 201, Mismatches: 16, Indels: 17
0.86 0.07 0.07
Matches are distributed among these distances:
150 19 0.09
151 16 0.08
152 39 0.19
153 10 0.05
154 7 0.03
155 1 0.00
159 4 0.02
160 57 0.28
161 2 0.01
162 46 0.23
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (150 bp):
TTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAAGGAAATTTTAAATTTTTAAAACAAAATT
TTGGTTTTTTTCAACTATTTCAAAATAAAAGCTTTGATCTTTAAGAAAAATAATATTTTTTTAAA
AAAAAAAGAGAAAGTTTAGA
Found at i:60739327 original size:32 final size:33
Alignment explanation
Indices: 60739291--60739355 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
60739281 TTTTAAAGGA
60739291 AAAGTTTGAA-TTTTTTAAAACAAAATTTTGAT
1 AAAGTTTGAATTTTTTTAAAACAAAATTTTGAT
60739323 AAAGTTTGAATTTTTTTAAAACAAAATTTTGAT
1 AAAGTTTGAATTTTTTTAAAACAAAATTTTGAT
60739356 CTTTTTCAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 10 0.31
33 22 0.69
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (33 bp):
AAAGTTTGAATTTTTTTAAAACAAAATTTTGAT
Found at i:60739989 original size:10 final size:10
Alignment explanation
Indices: 60739955--60739990 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
60739945 CACTTGTATA
60739955 ATTTTTATTT
1 ATTTTTATTT
*
60739965 ATTCTTATTT
1 ATTTTTATTT
60739975 CATTTTTATTT
1 -ATTTTTATTT
60739986 ATTTT
1 ATTTT
60739991 CATGTCCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:60745652 original size:40 final size:40
Alignment explanation
Indices: 60745569--60745754 Score: 162
Period size: 40 Copynumber: 4.7 Consensus size: 40
60745559 TCAAATGATG
* * * *
60745569 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
60745609 TCCGGACTAGGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** * *
60745649 TCCGGGTTAAGTCCCAAAGGCATTTATGCGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
** * * * *
60745689 TCCGGGTTAAGTCCTGAAGGCGTTTATGCGAGTTGCTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
60745730 -CCGGGCTATGTCCCGAAGGCGTTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
60745755 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 113 0.91
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60745761 original size:80 final size:79
Alignment explanation
Indices: 60745620--60745787 Score: 173
Period size: 80 Copynumber: 2.1 Consensus size: 79
60745610 CCGGACTAGG
* * *
60745620 ATCC-GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCAAAGGCATTTATGCGAGTTA
1 ATCCTGAAGGCATTTATGCGAGTTACTAAATCCGGGCTAAGTCCCAAAGGCATTTATACGAG-TA
60745684 -CTAAATCCGGGTTAA
65 GCTAAATCC-GGTTAA
* * * * * *
60745699 GTCCTGAAGGCGTTTATGCGAGTTGCTATAA-CCGGGCTATGTCCCGAAGGCGTTTGA-ACGAGT
1 ATCCTGAAGGCATTTATGCGAGTTACTA-AATCCGGGCTAAGTCCCAAAGGCATTT-ATACGAGT
*
60745762 AGCTATATCCGGTTAA
64 AGCTAAATCCGGTTAA
*
60745778 ATTCTGAAGG
1 ATCCTGAAGG
60745788 TACGTGATTC
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
79 19 0.26
80 51 0.70
81 3 0.04
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (79 bp):
ATCCTGAAGGCATTTATGCGAGTTACTAAATCCGGGCTAAGTCCCAAAGGCATTTATACGAGTAG
CTAAATCCGGTTAA
Found at i:60751964 original size:7 final size:7
Alignment explanation
Indices: 60751952--60751976 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60751942 GTTGTCTTCT
60751952 TGTTTGA
1 TGTTTGA
60751959 TGTTTGA
1 TGTTTGA
60751966 TGTTTGA
1 TGTTTGA
60751973 TGTT
1 TGTT
60751977 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:60752899 original size:27 final size:28
Alignment explanation
Indices: 60752814--60752912 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
60752804 TCATGAGATT
* * *
60752814 GCACTAAGTGTGCGGGTTTTAAATTTTACA
1 GCACTAAGTGTGCGAG-TTT-GATTTTATA
*
60752844 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTTTATA
*
60752872 GCACTAGGTGTGCGAG-TTGATTTTATA
1 GCACTAAGTGTGCGAGTTTGATTTTATA
60752899 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
60752913 GACTCACTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
27 23 0.37
28 21 0.34
29 3 0.05
30 15 0.24
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTTTATA
Found at i:60754810 original size:47 final size:47
Alignment explanation
Indices: 60754732--60755005 Score: 386
Period size: 47 Copynumber: 5.7 Consensus size: 47
60754722 CCCTTCGGGA
* * * * * * *
60754732 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
60754779 CCTATCACATATATACACTTTCATATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60754826 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60754875 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60754922 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60754969 CTTATCACATATATATACACCTTCACATTCATCACAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACAT
60755006 AAAATCCTAA
Statistics
Matches: 207, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
47 139 0.67
49 68 0.33
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60754894 original size:96 final size:96
Alignment explanation
Indices: 60754732--60755005 Score: 378
Period size: 96 Copynumber: 2.9 Consensus size: 96
60754722 CCCTTCGGGA
* * * * * * *
60754732 CTTATCACAT-T-TATACA-CTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATA
1 CTTATCACATATATATACACCTT-CACATTCATCACATCGGCCATTAGGCCTTATCATATATATA
* * *
60754794 CACTTTCATATTCATCACATTGGCCATTCGGC
65 CACTTTCACATTCATCACATCGGCCATTAGGC
60754826 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATAC
1 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATAC
60754891 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
60754922 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTAT--CATATATAT
*
60754985 ACACCTTCACATTCATCACAT
64 ACACTTTCACATTCATCACAT
60755006 AAAATCCTAA
Statistics
Matches: 163, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
94 53 0.33
95 1 0.01
96 106 0.65
97 3 0.02
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60754990 original size:143 final size:143
Alignment explanation
Indices: 60754732--60755005 Score: 440
Period size: 143 Copynumber: 1.9 Consensus size: 143
60754722 CCCTTCGGGA
* * * *
60754732 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
* * *
60754797 TTTCATATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACCTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
60754862 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* * * * *
60754875 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
60754940 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
60755005 T
131 T
60755006 AAAATCCTAA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
143 119 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (143 bp):
CTTATCACATATATACACTTCCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:60760216 original size:2 final size:2
Alignment explanation
Indices: 60760209--60760234 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
60760199 GCTCTTGCAC
60760209 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
60760235 GTTTGCACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60761027 original size:40 final size:40
Alignment explanation
Indices: 60760944--60761129 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
60760934 TCAAATGATG
* * * *
60760944 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
60760984 TCCGGACTAGGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** * *
60761024 TCCGGGTTAAGTCCCGAAGGCATTTATGTGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
** * * *
60761064 TCCGGGTTAAGTCCCGAAGGCGTTTATGCGAGTTGCTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
60761105 -CCGGGCTATGTCCCGAAGGCGTTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
60761130 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 115 0.91
41 10 0.08
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60761081 original size:80 final size:81
Alignment explanation
Indices: 60760944--60761124 Score: 208
Period size: 80 Copynumber: 2.3 Consensus size: 81
60760934 TCAAATGATG
* * *
60760944 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTATGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
60761009 GTGCGAGTTACTA-AA
66 ATGCGAGTTACTATAA
* * * ** *
60761024 TCCGGGTTAAGTCCCGAAGGCATTTATG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCGT
1 TCCGGGCTAAGTCCCGAAGGC-TTTATGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
*
60761087 TTATGCGAGTTGCTATAA
64 TTATGCGAGTTACTATAA
*
60761105 -CCGGGCTATGTCCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
60761125 GTTTGAACGA
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 1 0.01
80 77 0.91
81 7 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCTTTATGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
ATGCGAGTTACTATAA
Found at i:60761136 original size:40 final size:40
Alignment explanation
Indices: 60761025--60761143 Score: 118
Period size: 40 Copynumber: 3.0 Consensus size: 40
60761015 GTTACTAAAT
* * **
60761025 CCGGGTTAAGTCCCGAAGGCATTTATGTGAGTTA-CTA-AA
1 CCGGGCTAAGTCCCGAAGGCGTTTATACGAG-TAGCTATAA
* * *
60761064 TCCGGGTTAAGTCCCGAAGGCGTTTATGCGAGTTGCTATAA
1 -CCGGGCTAAGTCCCGAAGGCGTTTATACGAGTAGCTATAA
*
60761105 CCGGGCTATGTCCCGAAGGCGTTTGA-ACGAGTAGCTATA
1 CCGGGCTAAGTCCCGAAGGCGTTT-ATACGAGTAGCTATA
60761144 TCCTGTTAAA
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 65 0.94
41 3 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCGTTTATACGAGTAGCTATAA
Found at i:60766052 original size:29 final size:29
Alignment explanation
Indices: 60766010--60766112 Score: 100
Period size: 29 Copynumber: 3.4 Consensus size: 29
60766000 ACACCAGTAA
* *
60766010 AGGATAGCCTTTGTGGTACAACTCTAGAT
1 AGGAAAGCCTTTGTGGCACAACTCTAGAT
* ** *
60766039 AGGAAAGCCTTTGTGGCAAATACTAAATGTAA
1 AGGAAAGCCTTTGTGGCACA-ACTCTA-G-AT
*
60766071 AGGATAA-CCTTTGAGGCACAACTCTAGAT
1 AGGA-AAGCCTTTGTGGCACAACTCTAGAT
60766100 AGGAAAGCCTTTG
1 AGGAAAGCCTTTG
60766113 CGGCGAGTAC
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
28 2 0.03
29 28 0.48
30 5 0.09
31 5 0.09
32 16 0.28
33 2 0.03
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (29 bp):
AGGAAAGCCTTTGTGGCACAACTCTAGAT
Found at i:60766101 original size:61 final size:61
Alignment explanation
Indices: 60766006--60766387 Score: 458
Period size: 61 Copynumber: 6.3 Consensus size: 61
60765996 CGAAACACCA
* * * * * *
60766006 GTAAAGGATAGCCTTTGTGGTACAACTCTAGATAGGAAAGCCTTTGTGGCAAATACTAAAT
1 GTAAAGGATAGCCTTTGAGGCACAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTGAAT
* * *
60766067 GTAAAGGATAACCTTTGAGGCACAACTCTAGATAGGAAAGCCTTTGCGGCGAGTACTGAAT
1 GTAAAGGATAGCCTTTGAGGCACAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTGAAT
* * * * * * *
60766128 GTAAAGGATAGCCTTCGTGGCACAAATTTGGATAAGAAAGCCTTTGTGGCTAGTACTGAAC
1 GTAAAGGATAGCCTTTGAGGCACAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTGAAT
* * * * *
60766189 GTAAAGGATAGCCTTTGAGGTACAACTCTATACAAGAAAGCCTTTGTAGCGAGTACTTAAT
1 GTAAAGGATAGCCTTTGAGGCACAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTGAAT
* * * * * * * *
60766250 GTAAAGGACAGCCTTTGAGGCATAAATCTCGACAGGAAAGCCTTTGTGGCTAGTACTAAAT
1 GTAAAGGATAGCCTTTGAGGCACAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTGAAT
* * * * *
60766311 GTAAAGGATAGCCTTTGTGGAACAACTCTGGATAAGAAAGCCTTTATGGTGAGTACTGAAT
1 GTAAAGGATAGCCTTTGAGGCACAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTGAAT
60766372 GTAAAGGATAGCCTTT
1 GTAAAGGATAGCCTTT
60766388 ATGAAGAGTA
Statistics
Matches: 270, Mismatches: 51, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 270 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (61 bp):
GTAAAGGATAGCCTTTGAGGCACAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTGAAT
Found at i:60766202 original size:32 final size:31
Alignment explanation
Indices: 60766163--60766330 Score: 91
Period size: 32 Copynumber: 5.5 Consensus size: 31
60766153 ATTTGGATAA
60766163 GAAAGCCTTTGTGGCTAGTACTGAACGTAAAG
1 GAAAGCCTTTGTGGCTAGTACT-AACGTAAAG
* * ** *
60766195 GATAGCCTTTGAGG-TACAACT--C-TATACAA
1 GAAAGCCTTTGTGGCTAGTACTAACGTA-A-AG
* * *
60766224 GAAAGCCTTTGTAGCGAGTACTTAATGTAAAG
1 GAAAGCCTTTGTGGCTAGTAC-TAACGTAAAG
* * * *
60766256 GACAGCCTTTGAGGCATA-AATCT--CG-ACAG
1 GAAAGCCTTTGTGGC-TAGTA-CTAACGTAAAG
*
60766285 GAAAGCCTTTGTGGCTAGTACTAAATGTAAAG
1 GAAAGCCTTTGTGGCTAGTACT-AACGTAAAG
*
60766317 GATAGCCTTTGTGG
1 GAAAGCCTTTGTGG
60766331 AACAACTCTG
Statistics
Matches: 96, Mismatches: 26, Indels: 28
0.64 0.17 0.19
Matches are distributed among these distances:
27 2 0.02
28 6 0.06
29 29 0.30
30 4 0.04
31 7 0.07
32 43 0.45
33 3 0.03
34 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.27
Consensus pattern (31 bp):
GAAAGCCTTTGTGGCTAGTACTAACGTAAAG
Found at i:60766228 original size:122 final size:122
Alignment explanation
Indices: 60766006--60766387 Score: 512
Period size: 122 Copynumber: 3.1 Consensus size: 122
60765996 CGAAACACCA
* * * *
60766006 GTAAAGGATAGCCTTTGTGGTACAACTCTAGATAGGAAAGCCTTTGTGGCAAATACTAAATGTAA
1 GTAAAGGATAGCCTTTGTGGCACAAATCTAGATAGGAAAGCCTTTGTGGCTAGTACTAAATGTAA
* * * *
60766071 AGGATAACCTTTGAGGCACAACTCTAGATAGGAAAGCCTTTGCGGCGAGTACTGAAT
66 AGGATAGCCTTTGAGGAACAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTGAAT
* * * * * *
60766128 GTAAAGGATAGCCTTCGTGGCACAAATTTGGATAAGAAAGCCTTTGTGGCTAGTACTGAACGTAA
1 GTAAAGGATAGCCTTTGTGGCACAAATCTAGATAGGAAAGCCTTTGTGGCTAGTACTAAATGTAA
* * * * *
60766193 AGGATAGCCTTTGAGGTACAACTCTATACAAGAAAGCCTTTGTAGCGAGTACTTAAT
66 AGGATAGCCTTTGAGGAACAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTGAAT
* * * * *
60766250 GTAAAGGACAGCCTTTGAGGCATAAATCTCGACAGGAAAGCCTTTGTGGCTAGTACTAAATGTAA
1 GTAAAGGATAGCCTTTGTGGCACAAATCTAGATAGGAAAGCCTTTGTGGCTAGTACTAAATGTAA
* * * *
60766315 AGGATAGCCTTTGTGGAACAACTCTGGATAAGAAAGCCTTTATGGTGAGTACTGAAT
66 AGGATAGCCTTTGAGGAACAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTGAAT
60766372 GTAAAGGATAGCCTTT
1 GTAAAGGATAGCCTTT
60766388 ATGAAGAGTA
Statistics
Matches: 222, Mismatches: 38, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
122 222 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (122 bp):
GTAAAGGATAGCCTTTGTGGCACAAATCTAGATAGGAAAGCCTTTGTGGCTAGTACTAAATGTAA
AGGATAGCCTTTGAGGAACAACTCTAGATAAGAAAGCCTTTGTGGCGAGTACTGAAT
Found at i:60766314 original size:183 final size:183
Alignment explanation
Indices: 60766006--60766387 Score: 541
Period size: 183 Copynumber: 2.1 Consensus size: 183
60765996 CGAAACACCA
* * * *
60766006 GTAAAGGATAGCCTTTGTGGTACAACTCTAGATAGGAAAGCCTTTGTGGCAAATACTAAATGTAA
1 GTAAAGGATAGCCTTTGAGGTACAACTCTAGACAAGAAAGCCTTTGTAGCAAATACTAAATGTAA
* * * *
60766071 AGGATAACCTTTGAGGCACAACTCTAGATAGGAAAGCCTTTGCGGCGAGTACTGAATGTAAAGGA
66 AGGACAACCTTTGAGGCACAAATCTAGACAGGAAAGCCTTTGCGGCGAGTACTAAATGTAAAGGA
* * *
60766136 TAGCCTTCGTGGCACAAATTTGGATAAGAAAGCCTTTGTGGCT-AGTACTGAAC
131 TAGCCTTCGTGGAACAAATCTGGATAAGAAAGCCTTTATGG-TGAGTACTGAAC
* * * *
60766189 GTAAAGGATAGCCTTTGAGGTACAACTCTATACAAGAAAGCCTTTGTAGCGAGTACTTAATGTAA
1 GTAAAGGATAGCCTTTGAGGTACAACTCTAGACAAGAAAGCCTTTGTAGCAAATACTAAATGTAA
* * * * *
60766254 AGGACAGCCTTTGAGGCATAAATCTCGACAGGAAAGCCTTTGTGGCTAGTACTAAATGTAAAGGA
66 AGGACAACCTTTGAGGCACAAATCTAGACAGGAAAGCCTTTGCGGCGAGTACTAAATGTAAAGGA
* * *
60766319 TAGCCTTTGTGGAACAACTCTGGATAAGAAAGCCTTTATGGTGAGTACTGAAT
131 TAGCCTTCGTGGAACAAATCTGGATAAGAAAGCCTTTATGGTGAGTACTGAAC
60766372 GTAAAGGATAGCCTTT
1 GTAAAGGATAGCCTTT
60766388 ATGAAGAGTA
Statistics
Matches: 175, Mismatches: 23, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
182 1 0.01
183 174 0.99
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (183 bp):
GTAAAGGATAGCCTTTGAGGTACAACTCTAGACAAGAAAGCCTTTGTAGCAAATACTAAATGTAA
AGGACAACCTTTGAGGCACAAATCTAGACAGGAAAGCCTTTGCGGCGAGTACTAAATGTAAAGGA
TAGCCTTCGTGGAACAAATCTGGATAAGAAAGCCTTTATGGTGAGTACTGAAC
Found at i:60770292 original size:12 final size:12
Alignment explanation
Indices: 60770277--60770306 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
60770267 TCAAGTTGTT
60770277 ACACGGCCTAGC
1 ACACGGCCTAGC
*
60770289 ACACGGCCTGGC
1 ACACGGCCTAGC
60770301 ACACGG
1 ACACGG
60770307 GCGTGTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:60777992 original size:18 final size:18
Alignment explanation
Indices: 60777971--60778010 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
60777961 ATTTTTTGAA
60777971 TTTTAAAGAGTTTTTATT
1 TTTTAAAGAGTTTTTATT
** *
60777989 TTTTTCATAGTTTTTATT
1 TTTTAAAGAGTTTTTATT
60778007 TTTT
1 TTTT
60778011 TAAAATTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.20, C:0.03, G:0.07, T:0.70
Consensus pattern (18 bp):
TTTTAAAGAGTTTTTATT
Found at i:60779586 original size:16 final size:16
Alignment explanation
Indices: 60779565--60779595 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60779555 AGCTTATGGG
60779565 TTTTTCCTTTCTTTTT
1 TTTTTCCTTTCTTTTT
*
60779581 TTTTTCTTTTCTTTT
1 TTTTTCCTTTCTTTT
60779596 CTGAAATCTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTCCTTTCTTTTT
Found at i:60784351 original size:11 final size:11
Alignment explanation
Indices: 60784335--60784359 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
60784325 CCAAAGTATA
60784335 AAAACAACACC
1 AAAACAACACC
60784346 AAAACAACACC
1 AAAACAACACC
60784357 AAA
1 AAA
60784360 CGGCATAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAACAACACC
Found at i:60785411 original size:30 final size:30
Alignment explanation
Indices: 60785322--60785404 Score: 141
Period size: 29 Copynumber: 2.8 Consensus size: 30
60785312 CAATTTTCGG
*
60785322 GTCTAGGGGTAAAATGGTCATTTTGTCAAA
1 GTCTAGGGGCAAAATGGTCATTTTGTCAAA
60785352 GTCTAGGGGCAAAATGGT-ATTTTGTCAAA
1 GTCTAGGGGCAAAATGGTCATTTTGTCAAA
*
60785381 GTTTAGGGGCAAAATGGTCATTTT
1 GTCTAGGGGCAAAATGGTCATTTT
60785405 ACCAAAGATG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
29 28 0.56
30 22 0.44
ACGTcount: A:0.29, C:0.10, G:0.28, T:0.34
Consensus pattern (30 bp):
GTCTAGGGGCAAAATGGTCATTTTGTCAAA
Found at i:60785845 original size:48 final size:48
Alignment explanation
Indices: 60785747--60785971 Score: 191
Period size: 48 Copynumber: 4.8 Consensus size: 48
60785737 GTTGTTGTGG
* *
60785747 GCTAGTGTAAGA-CATGGCTGGGACAT-GCATCGGCCA-C-ATTATAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCGA-GATAAGA
* *
60785793 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACAAGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATAAGA
* * * *
60785841 GCTAGTGTAAGA-CATG-CTTGGGACAT-ACATCGGC-TACGAAATGATA
1 GCTAGTGTAAGACCATGTC-TGGGACATGGCATCGGCAT-CGAGATAAGA
* * *
60785887 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGATATGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATAAGA
* * * *
60785934 GCCCAATGTAAGACCATGTCTGGGATATGGCATTGGCA
1 G-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
60785972 CCCTACCCCA
Statistics
Matches: 144, Mismatches: 22, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
45 2 0.01
46 35 0.24
47 45 0.31
48 61 0.42
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATAAGA
Found at i:60785908 original size:94 final size:94
Alignment explanation
Indices: 60785747--60785920 Score: 255
Period size: 94 Copynumber: 1.9 Consensus size: 94
60785737 GTTGTTGTGG
* *
60785747 GCTAGTGTAAGACATGGCTGGGACATGCATCGGCCACATTATAAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGGCTGGGACATACATCGGCCACATAATAAGAGCTAGTGTAAGACCATGTC
60785812 TGGGACATGGCATCGGCATCGAGACAAGT
66 TGGGACATGGCATCGGCATCGAGACAAGT
* * *
60785841 GCTAGTGTAAGACAT-GCTTGGGACATACATCGGCTACGA-AATGATAG-TCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGGC-TGGGACATACATCGGCCAC-ATAATAAGAGCT-AGTGTAAGACCAT
60785903 GTCTGGGACATGGCATCG
63 GTCTGGGACATGGCATCG
60785921 ACTTGAGATA
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
93 3 0.04
94 68 0.94
95 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (94 bp):
GCTAGTGTAAGACATGGCTGGGACATACATCGGCCACATAATAAGAGCTAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATCGAGACAAGT
Found at i:60794685 original size:16 final size:17
Alignment explanation
Indices: 60794664--60794698 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
60794654 GACATAATTT
60794664 AAAATGAAAATT-TAAA
1 AAAATGAAAATTATAAA
*
60794680 AAAATGAATATTATAAA
1 AAAATGAAAATTATAAA
60794697 AA
1 AA
60794699 TATTGGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (17 bp):
AAAATGAAAATTATAAA
Found at i:60798610 original size:22 final size:22
Alignment explanation
Indices: 60798592--60798673 Score: 110
Period size: 22 Copynumber: 3.7 Consensus size: 22
60798582 TCAGCTCGTA
*
60798592 AGAGTTTACTGTTCAGCTCAAT
1 AGAGCTTACTGTTCAGCTCAAT
*
60798614 AGAGCTTACTATTCAGCTCAAT
1 AGAGCTTACTGTTCAGCTCAAT
* *
60798636 AGAGCTTACCGTTTCAGCTCGAT
1 AGAGCTTACTG-TTCAGCTCAAT
*
60798659 AAAGCTTACTGTTCA
1 AGAGCTTACTGTTCA
60798674 TCAGCTTGGG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
22 33 0.63
23 19 0.37
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (22 bp):
AGAGCTTACTGTTCAGCTCAAT
Found at i:60805420 original size:40 final size:40
Alignment explanation
Indices: 60805319--60805499 Score: 188
Period size: 40 Copynumber: 4.5 Consensus size: 40
60805309 TACTCGAATG
* *
60805319 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
60805360 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* *
60805400 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * * **
60805440 ATATCCGGGTTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
60805479 ATATCC-GGCTAAACCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
60805500 ATGCTTGATT
Statistics
Matches: 117, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 12 0.10
39 16 0.14
40 60 0.51
41 28 0.24
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:60810465 original size:40 final size:40
Alignment explanation
Indices: 60810420--60810547 Score: 131
Period size: 39 Copynumber: 3.2 Consensus size: 40
60810410 TTCGGAATAA
60810420 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
* *
60810460 CCGGATA-GA--ATGCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATG-T-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
60810499 CCGGATGTAGCCACT-AGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
60810539 CCGG-TATAA
1 CCGGATATAA
60810548 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 11, Indels: 13
0.75 0.12 0.14
Matches are distributed among these distances:
37 3 0.04
38 1 0.01
39 33 0.46
40 32 0.45
42 1 0.01
43 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:60816705 original size:71 final size:69
Alignment explanation
Indices: 60816617--60816778 Score: 306
Period size: 71 Copynumber: 2.3 Consensus size: 69
60816607 GAGATGTATC
60816617 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTG-
60816682 AGGACA
64 AGGACA
60816688 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
60816753 GACA
66 GACA
60816757 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60816779 AGACAAATCG
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 28 0.31
70 23 0.25
71 40 0.44
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (69 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
GACA
Found at i:60824338 original size:70 final size:71
Alignment explanation
Indices: 60824187--60824349 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
60824177 GAGATGTATC
60824187 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
60824252 AGGACA
66 AGGACA
60824258 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
60824322 CGGACA
66 AGGACA
60824328 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
60824350 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:60827583 original size:48 final size:48
Alignment explanation
Indices: 60827519--60827753 Score: 272
Period size: 48 Copynumber: 4.9 Consensus size: 48
60827509 GGTTATGTGT
* *
60827519 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGACATTGTTATGA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
* * * * *** *
60827567 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGC
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
*
60827615 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGT
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
* * * *
60827663 GAGGCAGTGTAAGACCATGTTTGGGATATGGCATCGGCACTGATGTATGA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG-T-TATGA
* ** * *
60827713 GAGCTAGTGTAAGACCATGTCCGGGACATGGCGTCGGCATT
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
60827754 TTACCCTTTT
Statistics
Matches: 155, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
48 116 0.75
49 1 0.01
50 38 0.25
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGA
Found at i:60827688 original size:96 final size:98
Alignment explanation
Indices: 60827519--60827753 Score: 323
Period size: 96 Copynumber: 2.4 Consensus size: 98
60827509 GGTTATGTGT
* *
60827519 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGACATTGTTATGAGAGCTAGTGTAAGACCA
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCA
*
60827584 TGTCTGGGACATGGCATCGGC-CTCA-ATATGC
66 TGTCTGGGACATGGCATCGGCACTCATATATGA
*
60827615 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGTGAGGC-AGTGTAAGACC
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGA-GCTAGTGTAAGACC
* * * *
60827679 ATGTTTGGGATATGGCATCGGCACTGATGTATGA
65 ATGTCTGGGACATGGCATCGGCACTCATATATGA
* ** * *
60827713 GAGCTAGTGTAAGACCATGTCCGGGACATGGCGTCGGCATT
1 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATT
60827754 TTACCCTTTT
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
96 78 0.63
97 5 0.04
98 40 0.33
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.26
Consensus pattern (98 bp):
GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCA
TGTCTGGGACATGGCATCGGCACTCATATATGA
Found at i:60833200 original size:24 final size:24
Alignment explanation
Indices: 60833168--60833219 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
60833158 AAGTCTGTCA
*
60833168 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAACTGATAAG
60833192 GGAGAGGATTTAGGAACTGATAAG
1 GGAGAGGATTTAGGAACTGATAAG
60833216 GGAG
1 GGAG
60833220 GACAGTGTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.04, G:0.42, T:0.19
Consensus pattern (24 bp):
GGAGAGGATTTAGGAACTGATAAG
Found at i:60834738 original size:26 final size:26
Alignment explanation
Indices: 60834631--60834741 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
60834621 AGGAAGCGTC
* * *
60834631 CTGGTGGCTATGCCAAAATTATCTGAT
1 CTGGTGGCTCTGCC-ACATTATCTGTT
*
60834658 CTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
60834685 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
60834712 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
60834738 CTGG
1 CTGG
60834742 CAGCCTTGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 17 0.23
27 56 0.75
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:60839284 original size:33 final size:33
Alignment explanation
Indices: 60839242--60839308 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
60839232 TGTGCTTTTG
60839242 AGGAAGAATTTGTGTTCTGAAGGACTCTGATTT
1 AGGAAGAATTTGTGTTCTGAAGGACTCTGATTT
60839275 AGGAAGAATTTGTGTTCTGAAGGACTCTGATTT
1 AGGAAGAATTTGTGTTCTGAAGGACTCTGATTT
60839308 A
1 A
60839309 AGGCAGACAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.09, G:0.27, T:0.36
Consensus pattern (33 bp):
AGGAAGAATTTGTGTTCTGAAGGACTCTGATTT
Found at i:60841512 original size:46 final size:46
Alignment explanation
Indices: 60841462--60841637 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
60841452 TGGTTGAGCA
60841462 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60841508 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60841553 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
60841601 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60841638 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60841618 original size:93 final size:93
Alignment explanation
Indices: 60841459--60841629 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
60841449 GGATGGTTGA
* *
60841459 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60841524 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60841552 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60841617 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60841630 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60844600 original size:15 final size:15
Alignment explanation
Indices: 60844580--60844648 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
60844570 GTATCTTGGG
60844580 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
60844595 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
60844610 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
60844625 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
60844640 TTTCTTTAT
1 TTTCTTTAT
60844649 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:60844649 original size:30 final size:30
Alignment explanation
Indices: 60844571--60844658 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
60844561 CATAGTATCG
* * * *
60844571 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
60844601 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
60844631 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
60844659 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:60847088 original size:46 final size:46
Alignment explanation
Indices: 60847038--60847213 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
60847028 TGGTTGAGCA
60847038 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60847084 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60847129 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
60847177 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60847214 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60847194 original size:93 final size:93
Alignment explanation
Indices: 60847035--60847205 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
60847025 GGATGGTTGA
* *
60847035 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60847100 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60847128 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60847193 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60847206 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60849420 original size:24 final size:24
Alignment explanation
Indices: 60849349--60849422 Score: 130
Period size: 24 Copynumber: 3.1 Consensus size: 24
60849339 GTCTGTCAGA
*
60849349 AGAGGATTTAGGAGCTGATAAGGA
1 AGAGGATTTAGGAGCTGATAAGGG
60849373 AGAGGATTTAGGAGCTGATAAGGG
1 AGAGGATTTAGGAGCTGATAAGGG
*
60849397 AGAGGATTTAGGAGCTGATTAGGG
1 AGAGGATTTAGGAGCTGATAAGGG
60849421 AG
1 AG
60849423 GACAGTGTTG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.34, C:0.04, G:0.41, T:0.22
Consensus pattern (24 bp):
AGAGGATTTAGGAGCTGATAAGGG
Found at i:60850931 original size:26 final size:26
Alignment explanation
Indices: 60850824--60850934 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
60850814 AGGAAGCGTC
* *
60850824 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
60850851 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
60850878 CTGGTGGCTCTACCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* * *
60850905 CTAGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
60850931 CTGG
1 CTGG
60850935 CAGCCTTGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 15 0.20
27 57 0.77
28 2 0.03
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:60857330 original size:43 final size:43
Alignment explanation
Indices: 60857281--60857431 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 43
60857271 TATCCCAAAT
* * * *
60857281 ATGGTCTTACATGTTATCACATATTGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATAGATGCCAATGTCCCAGAC
* ** *
60857324 AGGGTCTTACACAAAATCA-AT-TAGCAATGTCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATAG--ATGCCAATGTCCCAGAC
* *
60857367 ATGGTCTTACACGTAATCACA-ATACAACGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATA-GATGCCAATGTCCCAGAC
*
60857410 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACACGTAATCACAT
60857432 CTCGGTAACC
Statistics
Matches: 87, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 80 0.92
44 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATAGATGCCAATGTCCCAGAC
Found at i:60862949 original size:46 final size:46
Alignment explanation
Indices: 60862899--60863074 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
60862889 TGGTTGAGCA
60862899 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
60862945 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
60862990 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
60863038 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60863075 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:60863055 original size:93 final size:93
Alignment explanation
Indices: 60862896--60863066 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
60862886 GGATGGTTGA
* *
60862896 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60862961 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
60862989 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
60863054 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
60863067 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60866096 original size:29 final size:29
Alignment explanation
Indices: 60866010--60866093 Score: 100
Period size: 29 Copynumber: 2.9 Consensus size: 29
60866000 CATAGTATCG
* * * *
60866010 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGG-TTTCTC
60866040 TAT-TCTGGATTTCTTTATTCTGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGTTTCTC
60866069 TATCTTGGATTTCTTTATTC-GGTTT
1 TATCTTGGATTTCTTTATTCTGGTTT
60866094 TCTTGTTATC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 5 0.10
29 23 0.48
30 20 0.42
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.57
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGTTTCTC
Found at i:60866097 original size:14 final size:15
Alignment explanation
Indices: 60866019--60866097 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
60866009 GTATCTTGGG
*
60866019 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
60866034 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
60866049 TTTCTTTATTCTGG-
1 TTTCTTTATTCTGGA
*
60866063 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
60866078 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
60866092 TTTCTT
1 TTTCTT
60866098 GTTATCTTTG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
13 2 0.04
14 18 0.33
15 33 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:60868635 original size:93 final size:92
Alignment explanation
Indices: 60868477--60868646 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 92
60868467 GGATGGTTGA
* * *
60868477 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
60868542 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
60868569 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
60868634 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
60868647 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 24 0.33
93 49 0.67
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60868645 original size:46 final size:46
Alignment explanation
Indices: 60868481--60868654 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
60868471 GGTTGAGCAT
* * *
60868481 CCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
* * * *
60868526 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ACGC
60868571 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
*
60868619 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60868655 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
43 5 0.05
45 24 0.22
46 42 0.38
47 28 0.25
48 5 0.05
50 6 0.05
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGC
Found at i:60871687 original size:44 final size:42
Alignment explanation
Indices: 60871622--60871715 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 42
60871612 ATATGTGTTA
* ** * *
60871622 TCGTGTAAGACCACGTTTGGGATGTTGGCATCGATTTGTGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCG-TATATGATT
*
60871665 TACGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGATT
1 T-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATATGATT
60871708 TCGTGTAA
1 TCGTGTAA
60871716 TACCCTATCG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 7 0.16
43 9 0.20
44 28 0.64
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGTATATGATT
Found at i:60871749 original size:42 final size:44
Alignment explanation
Indices: 60871647--60871758 Score: 117
Period size: 42 Copynumber: 2.6 Consensus size: 44
60871637 TTTGGGATGT
* * *
60871647 TGGCATCGAT-TTGTGATTTACGTGTAAGACCATGTCTGGGACAT
1 TGGCATCGATATT-TGATTTACGTGTAAGACCATATCTGGAACAG
* * *
60871691 TGGCATCG-TATATGATTT-CGTGTAATACCCTATC-GGAACAG
1 TGGCATCGATATTTGATTTACGTGTAAGACCATATCTGGAACAG
*
60871732 TGGCATCGATATTTGA-TTACATGTAAG
1 TGGCATCGATATTTGATTTACGTGTAAG
60871759 GCCACGTGGA
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
41 15 0.27
42 25 0.45
43 7 0.12
44 9 0.16
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (44 bp):
TGGCATCGATATTTGATTTACGTGTAAGACCATATCTGGAACAG
Found at i:60881045 original size:46 final size:47
Alignment explanation
Indices: 60880983--60881209 Score: 311
Period size: 46 Copynumber: 4.9 Consensus size: 47
60880973 TTTGACATAA
* * * * *
60880983 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCACGT
* * *
60881029 TGTCATGGTATCTTTCAACCATGGTCTTA-TTATTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCACGT
*
60881075 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCACGT
* *
60881121 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCACGT
*
60881167 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCA
60881210 GAGAGCACAC
Statistics
Matches: 167, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 7 0.04
46 158 0.95
47 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCACGT
Found at i:60889822 original size:21 final size:22
Alignment explanation
Indices: 60889796--60889836 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
60889786 CTTTTAACAT
60889796 AGGGGC-ACACACCCGTGTGGG
1 AGGGGCAACACACCCGTGTGGG
*
60889817 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACACCCGTGTG
60889837 ATATTTCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACACCCGTGTGGG
Found at i:60894413 original size:22 final size:20
Alignment explanation
Indices: 60894354--60894428 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 20
60894344 GTCACATATA
* *
60894354 TCATGAACTCATACCACAAC
1 TCATGAGCTCAGACCACAAC
* * * *
60894374 TCATGAGTTTAGATCACATATT
1 TCATGAGCTCAGACCACA-A-C
60894396 TCATGAGCTCAGACCACAAC
1 TCATGAGCTCAGACCACAAC
60894416 TCATGAGCTCAGA
1 TCATGAGCTCAGA
60894429 TAACAAAGTT
Statistics
Matches: 43, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
20 26 0.60
21 2 0.05
22 15 0.35
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (20 bp):
TCATGAGCTCAGACCACAAC
Found at i:60894434 original size:20 final size:20
Alignment explanation
Indices: 60894396--60894434 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
60894386 ATCACATATT
*
60894396 TCATGAGCTCAGACCACAAC
1 TCATGAGCTCAGACAACAAC
*
60894416 TCATGAGCTCAGATAACAA
1 TCATGAGCTCAGACAACAA
60894435 AGTTCCTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.28, G:0.15, T:0.18
Consensus pattern (20 bp):
TCATGAGCTCAGACAACAAC
Done.