Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 201 of 425
Found at i:61250851 original size:150 final size:150
Alignment explanation
Indices: 61250580--61250883 Score: 545
Period size: 150 Copynumber: 2.0 Consensus size: 150
61250570 ACGGGTATTG
* * * *
61250580 ATATGTAATGGATGTGATGAAAGTCCCGAGAAGGGCATGTTAGGAGGTATGGTTATATGATATAC
1 ATATGGAATGAATGTGATGAAAGTCCCGAGAAGGGCATGTTAAGAGGTATGATTATATGATATAC
61250645 TACGATGAGCACAGGTATGTACGCTAAATTCATGAGTAATACTTTGGTGAATGATGACTTGTGAT
66 TACGATGAGCACAGGTATGTACGCTAAATTCATGAGTAATACTTTGGTGAATGATGACTTGTGAT
* *
61250710 GAGGAAGCATCTGTATGTGT
131 GAGGAAGCATATGTATGTAT
*
61250730 ATATGGAATGAATGTGATGAAAGTCCTGAGAAGGGCATGTTAAGAGGTATGATTATATGATATAC
1 ATATGGAATGAATGTGATGAAAGTCCCGAGAAGGGCATGTTAAGAGGTATGATTATATGATATAC
61250795 TACGATGAGCACAGGTATGTACGCTAAATTCATGAGTAATACTTTGGTGAATGATGACTTGTGAT
66 TACGATGAGCACAGGTATGTACGCTAAATTCATGAGTAATACTTTGGTGAATGATGACTTGTGAT
61250860 GAGGAAGCATATGTATGTAT
131 GAGGAAGCATATGTATGTAT
61250880 ATAT
1 ATAT
61250884 ATATGATAAA
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
150 147 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (150 bp):
ATATGGAATGAATGTGATGAAAGTCCCGAGAAGGGCATGTTAAGAGGTATGATTATATGATATAC
TACGATGAGCACAGGTATGTACGCTAAATTCATGAGTAATACTTTGGTGAATGATGACTTGTGAT
GAGGAAGCATATGTATGTAT
Found at i:61252392 original size:21 final size:21
Alignment explanation
Indices: 61252366--61252408 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
61252356 GTGAGGGTTT
*
61252366 ATAGTTGACTAAGGCTTGGAA
1 ATAGTTGACCAAGGCTTGGAA
*
61252387 ATAGTTGACCACGGCTTGGAA
1 ATAGTTGACCAAGGCTTGGAA
61252408 A
1 A
61252409 ATACCCTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.26
Consensus pattern (21 bp):
ATAGTTGACCAAGGCTTGGAA
Found at i:61262925 original size:13 final size:13
Alignment explanation
Indices: 61262907--61262942 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
61262897 GAAAAAATTG
61262907 AAGCCACATGGCC
1 AAGCCACATGGCC
61262920 AAGCCACATGGCC
1 AAGCCACATGGCC
*
61262933 AAGGCACATG
1 AAGCCACATG
61262943 CCCGTGTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.33, G:0.25, T:0.08
Consensus pattern (13 bp):
AAGCCACATGGCC
Found at i:61266324 original size:2 final size:2
Alignment explanation
Indices: 61266317--61266346 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
61266307 TTGAGTATTC
61266317 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61266347 TCGGCCAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:61267763 original size:39 final size:40
Alignment explanation
Indices: 61267709--61267885 Score: 191
Period size: 40 Copynumber: 4.5 Consensus size: 40
61267699 GAGTCACGTA
** *
61267709 CCTTCGGGAT-TTAA-CCGGATATAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATATAATAACTAGCACAATTG
* * *
61267748 CCTTCGGGTCTTAACCCGGATTTAGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
*
61267788 CCTTCGGGTCTTAACCCGGATATAA-AACTCGCACGAA-TG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCAC-AATTG
* * * *
61267827 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
* *
61267867 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGTCTTAACCCGG
61267886 GTATCATTCA
Statistics
Matches: 119, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 48 0.40
40 70 0.59
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATATAATAACTAGCACAATTG
Found at i:61271590 original size:93 final size:93
Alignment explanation
Indices: 61271478--61271649 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61271468 GCCCATAAGT
* *
61271478 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61271543 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
61271571 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61271636 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
61271650 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61271645 original size:46 final size:46
Alignment explanation
Indices: 61271470--61271645 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
61271460 TGTAACCCGC
* * *
61271470 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
61271516 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
61271566 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
61271609 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61271646 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:61274074 original size:30 final size:30
Alignment explanation
Indices: 61274030--61274118 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
61274020 CAAAGATAAC
61274030 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
61274059 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
61274089 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
61274119 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:61274078 original size:15 final size:15
Alignment explanation
Indices: 61274030--61274109 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
61274020 CAAAGATAAC
*
61274030 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
61274044 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
61274059 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
61274074 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
61274089 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
61274104 AAGAAA
1 AAGAAA
61274110 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:61274118 original size:15 final size:15
Alignment explanation
Indices: 61274041--61274118 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
61274031 AGAAAACCGA
61274041 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
61274056 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
61274070 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
61274085 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
61274101 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
61274116 ATA
1 ATA
61274119 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:61277176 original size:93 final size:93
Alignment explanation
Indices: 61277064--61277235 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61277054 GCCCATAAGT
* *
61277064 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61277129 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
61277157 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61277222 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
61277236 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61277231 original size:46 final size:46
Alignment explanation
Indices: 61277056--61277231 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
61277046 TGTAACCCGC
* * *
61277056 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
61277102 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
61277152 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
61277195 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61277232 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:61287269 original size:48 final size:48
Alignment explanation
Indices: 61287205--61287330 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 48
61287195 CAAGGTAAAT
* * *
61287205 ATATATATGTGTGGTAAAGCCGAATGGCTAATATGAGACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
* *
61287253 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
** *
61287301 GGATGTATATTTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
61287331 TTGTGCAATA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAACATGTATGAG
Found at i:61287356 original size:48 final size:47
Alignment explanation
Indices: 61287216--61287359 Score: 164
Period size: 48 Copynumber: 3.0 Consensus size: 47
61287206 TATATATGTG
* * *
61287216 TGGTAAAGCCGAATGGCTAATATGAGACATGTATGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-ATATGTATGAGATGTGTATATT
* *
61287264 TGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG-GGATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATG-TGTATATT
* * * *
61287312 TGGTAAAGCCGAATGGCTATTGTGCAATACGTAGGAGATGTGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTATGAGATGTGTATATT
61287360 GTGGCCGAAT
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
48 79 0.98
49 2 0.02
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.31
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAATATGTATGAGATGTGTATATT
Found at i:61287539 original size:37 final size:37
Alignment explanation
Indices: 61287489--61287569 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
61287479 GGAAATATAT
* *
61287489 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTCTG
1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
*
61287526 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTTTA
1 TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
61287563 TCCGGGT
1 TCCGGGT
61287570 TAAAACCCCG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.21, C:0.22, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACCACGTGTGGAGATTCTA
Found at i:61289915 original size:27 final size:28
Alignment explanation
Indices: 61289858--61289927 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
61289848 AAATTTGTAC
**
61289858 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
61289886 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
61289913 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
61289928 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:61289936 original size:27 final size:27
Alignment explanation
Indices: 61289858--61289939 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
61289848 AAATTTGTAC
* *
61289858 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
61289886 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
61289913 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
61289940 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:61297838 original size:27 final size:28
Alignment explanation
Indices: 61297781--61297850 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
61297771 AAATTTGTAC
**
61297781 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
61297809 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
61297836 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
61297851 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:61297859 original size:27 final size:27
Alignment explanation
Indices: 61297781--61297862 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
61297771 AAATTTGTAC
* *
61297781 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
61297809 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
61297836 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
61297863 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:61306756 original size:15 final size:14
Alignment explanation
Indices: 61306733--61306762 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
61306723 AATAAAGAAC
61306733 TTATAACTATTCAA
1 TTATAACTATTCAA
61306747 TTATATACTATTCAA
1 TTATA-ACTATTCAA
61306762 T
1 T
61306763 CAACTCAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (14 bp):
TTATAACTATTCAA
Found at i:61318973 original size:37 final size:37
Alignment explanation
Indices: 61318923--61318996 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
61318913 GATCGATGTC
*
61318923 GTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGATTT
1 GTTGTGATTAGCC--ATGAGATGTGGCTTATAATGATTT
61318960 GTTGT-ATGTAGCCATGAGATGTGGCTTATAATGATTT
1 GTTGTGAT-TAGCCATGAGATGTGGCTTATAATGATTT
61318997 TGGCTTGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 3 0.09
36 4 0.12
37 26 0.79
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (37 bp):
GTTGTGATTAGCCATGAGATGTGGCTTATAATGATTT
Found at i:61320613 original size:46 final size:44
Alignment explanation
Indices: 61320560--61320680 Score: 147
Period size: 46 Copynumber: 2.7 Consensus size: 44
61320550 TATGTGTGCT
*
61320560 AGTGTAAGACATGTCTGGGACATGCATCTGCCACA-TATTG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-G--ACATTA-AGAAGAGCC
* *
61320606 AGTGTAAGACATGTCTAGGACATGCATCGACATTAAGACAAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACATTAAG--AAGAGCC
61320652 AGTGTAAGACATGTCTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
61320681 GCCTCAAGAT
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
43 4 0.06
44 2 0.03
45 1 0.01
46 60 0.90
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATTAAGAAGAGCC
Found at i:61329384 original size:40 final size:41
Alignment explanation
Indices: 61329223--61329445 Score: 262
Period size: 41 Copynumber: 5.5 Consensus size: 41
61329213 AGCTTGGGTT
* *
61329223 CGAAGGGCTTTTGAGCCAGTGCTAATAACTGAACTTAATTA
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
* *
61329264 CGAAGGGCTTTTGAGCTAGTGCTAATAACCGAACTTAATTA
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
*
61329305 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTT
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
* * *
61329346 TGAAGGGCTTTTGAGCCAGTG-TCATAACC-AGACTTAGTTC
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGA-ACTTAGTTA
* * *
61329386 CGAAGGGCCTTCGAGCCAGTGGCCTAAT--CCG-ACTTGGTCT-
1 CGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGT-TA
61329426 CGAAGGGC-TTTGAGCCAGTG
1 CGAAGGGCTTTTGAGCCAGTG
61329446 TTAAGAATCG
Statistics
Matches: 162, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
38 1 0.01
39 11 0.07
40 46 0.28
41 101 0.62
43 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (41 bp):
CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTA
Found at i:61334065 original size:5 final size:5
Alignment explanation
Indices: 61334037--61334129 Score: 154
Period size: 5 Copynumber: 19.0 Consensus size: 5
61334027 TAAAAATTTA
* *
61334037 ATTAT GTTAA ATTAT A-TA- ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
61334085 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
61334130 GAAATAAATA
Statistics
Matches: 82, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
3 1 0.01
4 4 0.05
5 77 0.94
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:61334550 original size:3 final size:3
Alignment explanation
Indices: 61334542--61334588 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
61334532 AAATAGATAT
61334542 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
61334589 GTTAACTAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:61334711 original size:12 final size:12
Alignment explanation
Indices: 61334680--61334713 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
61334670 AAAAAGGGGG
61334680 AAAGGAAAGAAGA
1 AAAGGAAA-AAGA
61334693 AAA-GAAAAAGA
1 AAAGGAAAAAGA
61334704 AAAGGAAAAA
1 AAAGGAAAAA
61334714 CTAGGGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 7 0.35
12 10 0.50
13 3 0.15
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAGGAAAAAGA
Found at i:61336880 original size:30 final size:30
Alignment explanation
Indices: 61336825--61336955 Score: 162
Period size: 30 Copynumber: 4.5 Consensus size: 30
61336815 ATAGTGAATC
*
61336825 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
* *
61336854 CGCACACTTAGTGTTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
61336884 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
61336912 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
61336942 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61336956 CAATCTTGTC
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 18 0.20
30 47 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:61336935 original size:58 final size:58
Alignment explanation
Indices: 61336824--61336955 Score: 167
Period size: 58 Copynumber: 2.3 Consensus size: 58
61336814 TATAGTGAAT
* * * * * *
61336824 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGTTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
61336883 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
61336941 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
61336956 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.65
59 20 0.32
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:61338564 original size:25 final size:25
Alignment explanation
Indices: 61338530--61338581 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
61338520 TTTTTATGCC
61338530 TCAGTTTTGTGGTCCCGAAACCACA
1 TCAGTTTTGTGGTCCCGAAACCACA
61338555 TCAGTTTTGTGGTCCCGAAACCACA
1 TCAGTTTTGTGGTCCCGAAACCACA
61338580 TC
1 TC
61338582 CCGACTAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (25 bp):
TCAGTTTTGTGGTCCCGAAACCACA
Found at i:61344852 original size:30 final size:30
Alignment explanation
Indices: 61344797--61344927 Score: 162
Period size: 30 Copynumber: 4.5 Consensus size: 30
61344787 ATAGTGAATC
*
61344797 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
* *
61344826 CGCACACTTAGTGTTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
61344856 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
61344884 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
61344914 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61344928 CAATCTTGTC
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 18 0.20
30 47 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:61344907 original size:58 final size:58
Alignment explanation
Indices: 61344796--61344927 Score: 167
Period size: 58 Copynumber: 2.3 Consensus size: 58
61344786 TATAGTGAAT
* * * * * *
61344796 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGTTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
61344855 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
61344913 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
61344928 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.65
59 20 0.32
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:61346668 original size:13 final size:14
Alignment explanation
Indices: 61346647--61346686 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
61346637 ATTTGATTGG
61346647 AAAATGAATTAAA-
1 AAAATGAATTAAAT
*
61346660 AATATGAATTAAAT
1 AAAATGAATTAAAT
61346674 AAAAGTGAATTAA
1 AAAA-TGAATTAA
61346687 TTTATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 3 0.13
15 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (14 bp):
AAAATGAATTAAAT
Found at i:61359841 original size:46 final size:46
Alignment explanation
Indices: 61359783--61359957 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
61359773 TGTAACCCGC
*
61359783 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
61359829 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
61359879 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
61359922 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
61359958 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.57
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:61359949 original size:93 final size:93
Alignment explanation
Indices: 61359790--61359961 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
61359780 CGCCCATAAG
* * *
61359790 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
61359855 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
61359883 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
61359948 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
61359962 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:61361656 original size:23 final size:23
Alignment explanation
Indices: 61361626--61361673 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
61361616 TACAGGTCAT
61361626 AGTAAGCTTATAAGAAATCAATA
1 AGTAAGCTTATAAGAAATCAATA
61361649 AGTAAGCTTATAAGAAATCAATA
1 AGTAAGCTTATAAGAAATCAATA
61361672 AG
1 AG
61361674 CAACTCATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.52, C:0.08, G:0.15, T:0.25
Consensus pattern (23 bp):
AGTAAGCTTATAAGAAATCAATA
Found at i:61361689 original size:23 final size:23
Alignment explanation
Indices: 61361629--61361689 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
61361619 AGGTCATAGT
* * *
61361629 AAGCTTATAAGAAATCAATAAGT
1 AAGCTCATAACAAATCAATAAGC
* *
61361652 AAGCTTATAAGAAATCAATAAGC
1 AAGCTCATAACAAATCAATAAGC
61361675 AA-CTCATTAACAAAT
1 AAGCTCA-TAACAAAT
61361690 TTTTGTCAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 3 0.09
23 31 0.91
ACGTcount: A:0.52, C:0.13, G:0.10, T:0.25
Consensus pattern (23 bp):
AAGCTCATAACAAATCAATAAGC
Found at i:61362685 original size:32 final size:32
Alignment explanation
Indices: 61362648--61362712 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
61362638 AATGCTTACC
61362648 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
61362680 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
61362712 A
1 A
61362713 AATGCATACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:61363993 original size:20 final size:21
Alignment explanation
Indices: 61363963--61364001 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
61363953 TGGTGCTACA
*
61363963 TCAACAATAAAATATTAAAAG
1 TCAACAATAAAATAATAAAAG
61363984 TCAA-AATAAAATAATAAA
1 TCAACAATAAAATAATAAA
61364002 GATAAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.67, C:0.08, G:0.03, T:0.23
Consensus pattern (21 bp):
TCAACAATAAAATAATAAAAG
Found at i:61365543 original size:26 final size:26
Alignment explanation
Indices: 61365506--61365558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
61365496 TGATAATGTT
*
61365506 CTGCCTCTGCTCTGACTAGGACTTCA
1 CTGCCTCCGCTCTGACTAGGACTTCA
*
61365532 CTGCCTCCGCTCTGACTAGGGCTTCA
1 CTGCCTCCGCTCTGACTAGGACTTCA
61365558 C
1 C
61365559 ATTATCTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.38, G:0.21, T:0.28
Consensus pattern (26 bp):
CTGCCTCCGCTCTGACTAGGACTTCA
Found at i:61374391 original size:23 final size:24
Alignment explanation
Indices: 61374360--61374410 Score: 86
Period size: 23 Copynumber: 2.2 Consensus size: 24
61374350 TATGGATTAT
61374360 AGGTGCTAATTAAAAATTCTTTTG
1 AGGTGCTAATTAAAAATTCTTTTG
*
61374384 AGGT-CTAATTAAAAGTTCTTTTG
1 AGGTGCTAATTAAAAATTCTTTTG
61374407 AGGT
1 AGGT
61374411 ATTCATTGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (24 bp):
AGGTGCTAATTAAAAATTCTTTTG
Found at i:61385684 original size:6 final size:6
Alignment explanation
Indices: 61385673--61385710 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
61385663 AAAAGGAAAT
61385673 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AA
61385711 GATAGGAGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:61391734 original size:21 final size:22
Alignment explanation
Indices: 61391710--61391753 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
61391700 ATCTTCTCGA
* *
61391710 TTTGGTCCGTTTTGTC-CCTTT
1 TTTGCTCCGTTTTGGCTCCTTT
*
61391731 TTTGCTCCTTTTTGGCTCCTTT
1 TTTGCTCCGTTTTGGCTCCTTT
61391753 T
1 T
61391754 AACTCTTGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.00, C:0.25, G:0.16, T:0.59
Consensus pattern (22 bp):
TTTGCTCCGTTTTGGCTCCTTT
Found at i:61399367 original size:43 final size:43
Alignment explanation
Indices: 61399287--61399369 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
61399277 GAGATATGTG
*
61399287 GCATCCAAGCTCGTTGAGAGGTCCAAGTTTATTATGGATGCAA
1 GCATCCAAGCTCGTTGAGAGGTCCAAGTTTATGATGGATGCAA
* * *
61399330 GCATCCGAGCTCGTTGAGTGGTCCGA-TTTCATGATGGATG
1 GCATCCAAGCTCGTTGAGAGGTCCAAGTTT-ATGATGGATG
61399370 TGATTCATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 3 0.09
43 32 0.91
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (43 bp):
GCATCCAAGCTCGTTGAGAGGTCCAAGTTTATGATGGATGCAA
Found at i:61411012 original size:53 final size:53
Alignment explanation
Indices: 61410897--61411086 Score: 193
Period size: 53 Copynumber: 3.6 Consensus size: 53
61410887 TTCCTAAAAT
* * * * ** * * * *
61410897 TTTCCATATGATGTTATGACCCACCAATTACGGTCTTACATTATACGGTATTC
1 TTTCCATATGATGTCATAACCCACTAGTTACACTCTCACACTATATGGTCTTC
* * * *
61410950 TTTCTATATGATGCCATAATCCACTAGTTATACTCTCACACTATATGGTCTTC
1 TTTCCATATGATGTCATAACCCACTAGTTACACTCTCACACTATATGGTCTTC
* * * * *
61411003 TTTCCATATGATGTCATAACCCACCAATTACAGTCTTACACGATATGGTCTTC
1 TTTCCATATGATGTCATAACCCACTAGTTACACTCTCACACTATATGGTCTTC
61411056 -TTCTCATATGATGTCATAACCCACTAGTTAC
1 TTTC-CATATGATGTCATAACCCACTAGTTAC
61411087 GATCTTACAT
Statistics
Matches: 111, Mismatches: 25, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
52 3 0.03
53 108 0.97
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.37
Consensus pattern (53 bp):
TTTCCATATGATGTCATAACCCACTAGTTACACTCTCACACTATATGGTCTTC
Found at i:61426111 original size:2 final size:2
Alignment explanation
Indices: 61426100--61426140 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
61426090 ATGTAAGCCC
61426100 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
61426141 GGCATTGGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:61429402 original size:2 final size:2
Alignment explanation
Indices: 61429395--61429423 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
61429385 TATACATACA
61429395 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
61429424 ACGCATTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:61431044 original size:43 final size:43
Alignment explanation
Indices: 61430868--61431151 Score: 344
Period size: 43 Copynumber: 6.6 Consensus size: 43
61430858 ATATCGTACA
*
61430868 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * * *
61430911 ATG-CTACTGTCCCAAACAG-AGTCTTACTCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* * * * *
61430954 ATG-CTACTGTCCCAAACAG-AGTCTTACTCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATATCG
*
61430997 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * *
61431040 ATGCCAACATCCCAGATGTGGTCTTACACGTAATCACATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
61431083 ATGCCAACGTCCCAGACGTGATCTTACAC-TAATCACATGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
61431125 ATGCCAACGTCCCAGACGTGGTCTTAC
1 ATGCCAACGTCCCAGACGTGGTCTTAC
61431152 TCGCACACAT
Statistics
Matches: 217, Mismatches: 20, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
42 41 0.19
43 172 0.79
44 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:61434161 original size:33 final size:33
Alignment explanation
Indices: 61434119--61434184 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
61434109 TGTACTGTAC
*
61434119 TGGCAGCTCTGCTGTAACTACTGTTTAGTGCCG
1 TGGCAGCTCTGCTGTAACTACTATTTAGTGCCG
61434152 TGGCAGCTCTGCTGTAACTACTATTTAGTGCCG
1 TGGCAGCTCTGCTGTAACTACTATTTAGTGCCG
61434185 CAACCGGTAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.17, C:0.24, G:0.26, T:0.33
Consensus pattern (33 bp):
TGGCAGCTCTGCTGTAACTACTATTTAGTGCCG
Found at i:61441816 original size:40 final size:40
Alignment explanation
Indices: 61441624--61441809 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
61441614 TCGAATGATG
* * * *
61441624 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
61441664 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61441704 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
61441744 TCCGGGTTAAGTCCCGAAGGCATCTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
61441785 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61441810 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 119 0.92
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61441816 original size:80 final size:79
Alignment explanation
Indices: 61441677--61441832 Score: 194
Period size: 80 Copynumber: 2.0 Consensus size: 79
61441667 GGACTAAGAT
**
61441677 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
61441741 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAGTC
* *
61441757 CCGAAGGCA-TCTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAG
1 CCGAAGGCATTC-GTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAG
*
61441819 CTATATCCGGTTAA
63 CTAAATCCGGTTAA
61441833 ACTCCAAAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
79 11 0.16
80 54 0.81
81 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAGTC
Found at i:61451658 original size:43 final size:43
Alignment explanation
Indices: 61451523--61451680 Score: 166
Period size: 43 Copynumber: 3.7 Consensus size: 43
61451513 TGTGTTATCG
* *
61451523 TGTAAGACCACGTCTGGGAC-GTTGGCATC-GACTTATGATTTACT
1 TGTAAGACCACGTCTGGGACAGTTGGCATCATAC-T-TGA-TTACA
* * *
61451567 TGTAAGACCACATCTGGGAC-GTTGGCATCGTACTTGATTACG
1 TGTAAGACCACGTCTGGGACAGTTGGCATCATACTTGATTACA
* *
61451609 TGTAAGACTC-TGTCTGGGACAG-TGGCATCAATATTTGATTACA
1 TGTAAGAC-CACGTCTGGGACAGTTGGCATC-ATACTTGATTACA
61451652 TGTAAGACCACGTCTGGGA-AGTTGGCATC
1 TGTAAGACCACGTCTGGGACAGTTGGCATC
61451681 GTATGAGCTT
Statistics
Matches: 99, Mismatches: 9, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
42 30 0.30
43 38 0.38
44 29 0.29
45 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTTGGCATCATACTTGATTACA
Found at i:61460163 original size:40 final size:40
Alignment explanation
Indices: 61460118--61460244 Score: 148
Period size: 40 Copynumber: 3.2 Consensus size: 40
61460108 CGGAACATAA
61460118 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
61460158 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
61460198 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
61460238 CCGGATA
1 CCGGATA
61460245 AAATTTCCAG
Statistics
Matches: 70, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 69 0.99
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:61460262 original size:40 final size:40
Alignment explanation
Indices: 61460134--61460284 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
61460124 ATAACCACGT
* * *
61460134 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTC-CA
** ** * *
61460174 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
61460214 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
61460254 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATA
61460285 TCATTCAATT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
Found at i:61460268 original size:80 final size:80
Alignment explanation
Indices: 61460134--61460283 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
61460124 ATAACCACGT
* *
61460134 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
61460198 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
61460214 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
61460277 CCCGGAT
64 CCCGGAT
61460284 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:61462428 original size:43 final size:42
Alignment explanation
Indices: 61462303--61462465 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 42
61462293 ATGTGTTATT
* * *
61462303 GTGTAAGACCACATCTAGGACGTTGGCGTTG-ACTTATGATTTAC
1 GTGTAAGACCACATCTGGGACGTTGGCATCGTAC-T-TGATTT-C
61462347 GTGTAAGACCACATCTGGGACGTTGGCATCGTACTTGATTTC
1 GTGTAAGACCACATCTGGGACGTTGGCATCGTACTTGATTTC
* * *
61462389 GTGTAAGACC-CTGTCTGGGAC-TGTGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-ATCTGGGACGT-TGGCATCG-TACTTGATTTC
* * * *
61462432 ATGTAAGACCACGTCTAGGACGTTGGCATTGTAC
1 GTGTAAGACCACATCTGGGACGTTGGCATCGTAC
61462466 GAGCTTTCCA
Statistics
Matches: 103, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
41 2 0.02
42 29 0.28
43 39 0.38
44 31 0.30
45 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCACATCTGGGACGTTGGCATCGTACTTGATTTC
Found at i:61465659 original size:31 final size:31
Alignment explanation
Indices: 61465621--61465687 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
61465611 GGTTTTGAAG
*
61465621 TATCAAGTACTATGTACCAGTGACTATATTA
1 TATCAAGTACTATGTACCAGTGACCATATTA
* *
61465652 TATCAAGTTCTATGTACTAGTGACCATATTA
1 TATCAAGTACTATGTACCAGTGACCATATTA
61465683 TATCA
1 TATCA
61465688 GTTAGTACGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.37
Consensus pattern (31 bp):
TATCAAGTACTATGTACCAGTGACCATATTA
Found at i:61467330 original size:28 final size:28
Alignment explanation
Indices: 61467299--61467360 Score: 124
Period size: 28 Copynumber: 2.2 Consensus size: 28
61467289 AATTAAAAAA
61467299 AAAAGATGAACTGGTTTGTAAAGAGTCC
1 AAAAGATGAACTGGTTTGTAAAGAGTCC
61467327 AAAAGATGAACTGGTTTGTAAAGAGTCC
1 AAAAGATGAACTGGTTTGTAAAGAGTCC
61467355 AAAAGA
1 AAAAGA
61467361 GAATGAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.23
Consensus pattern (28 bp):
AAAAGATGAACTGGTTTGTAAAGAGTCC
Found at i:61472777 original size:42 final size:42
Alignment explanation
Indices: 61472715--61472958 Score: 382
Period size: 42 Copynumber: 5.8 Consensus size: 42
61472705 TCAGTATCGG
* * *
61472715 GGTCTTACACGAAATTAGATATGATGTCGATGTCCCAGACAG
1 GGTCTTACACGAAATCAGATACGATGTCGATGTCCCAGACAT
* *
61472757 GGTCTTACACGAAATCAGATACGATGTCGATGTTCCAAACAT
1 GGTCTTACACGAAATCAGATACGATGTCGATGTCCCAGACAT
* *
61472799 GGTCTTACACGAAATCTA-ATATGATGCCGATGTCCCAGACAT
1 GGTCTTACACGAAATC-AGATACGATGTCGATGTCCCAGACAT
*
61472841 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACGAAATCAGATACGATGTCGATGTCCCAGACAT
*
61472883 GGTCTTACACAAAATCAGATACGATGTCGATGTCCCAGACAT
1 GGTCTTACACGAAATCAGATACGATGTCGATGTCCCAGACAT
*
61472925 GGTCTTACACAAAATCAGATACGATGTCGATGTC
1 GGTCTTACACGAAATCAGATACGATGTCGATGTC
61472959 ACTTTAGAAA
Statistics
Matches: 188, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
41 1 0.01
42 186 0.99
43 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAAATCAGATACGATGTCGATGTCCCAGACAT
Found at i:61478236 original size:26 final size:26
Alignment explanation
Indices: 61478191--61478262 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
61478181 GAGGAAGTGC
* *
61478191 AAAAGGGC-TATGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCA
* *
61478216 AAAAGGGCTTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCA
*
61478242 AAAAGGGCTTTCGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
61478263 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
25 8 0.20
26 32 0.80
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCA
Found at i:61478275 original size:25 final size:26
Alignment explanation
Indices: 61478190--61478275 Score: 74
Period size: 25 Copynumber: 3.4 Consensus size: 26
61478180 GGAGGAAGTG
* *
61478190 CAAAAG-GGCTAT-GCCCCAGTTTAC
1 CAAAAGAGGCTTTCGCCCCAGTTTAT
* *
61478214 CGAAAAG-GGCTTTTGCCCTAGTTTAT
1 C-AAAAGAGGCTTTCGCCCCAGTTTAT
61478240 CAAAA-AGGGCTTTCGCCCCAG-TTAT
1 CAAAAGA-GGCTTTCGCCCCAGTTTAT
*
61478265 TAAAAGAGGCT
1 CAAAAGAGGCT
61478276 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
24 1 0.02
25 26 0.51
26 24 0.47
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (26 bp):
CAAAAGAGGCTTTCGCCCCAGTTTAT
Found at i:61478520 original size:31 final size:31
Alignment explanation
Indices: 61478482--61478565 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
61478472 TCGTTACAGT
61478482 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
61478513 AAAGGCTTCAGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
61478544 GAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
61478566 CTGAGATTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:61482909 original size:42 final size:42
Alignment explanation
Indices: 61482858--61483115 Score: 347
Period size: 42 Copynumber: 6.1 Consensus size: 42
61482848 TCGATGCCTC
* * *
61482858 TGTCCCAGACATGGTCTTACACGAAATTAGATATGATGTCGA
1 TGTCCCAGACATGGTCTTACACAAAATCAGATACGATGTCGA
* * * * *
61482900 TGTCCCAGACATGGACTTACACGAAATAAGATCCGATGCCGA
1 TGTCCCAGACATGGTCTTACACAAAATCAGATACGATGTCGA
*
61482942 TGTCCCAGACATGGTCTTACACAAAATCAGATATGATG-CTGA
1 TGTCCCAGACATGGTCTTACACAAAATCAGATACGATGTC-GA
* * * *
61482984 TGTCCTAGACATGGCCTTACTCAAAATCAGATACGATGCCGA
1 TGTCCCAGACATGGTCTTACACAAAATCAGATACGATGTCGA
* *
61483026 TGTCCCAGACATGGTCTTACAGAAAATCAGATACGATGTTGA
1 TGTCCCAGACATGGTCTTACACAAAATCAGATACGATGTCGA
* *
61483068 TGTCGCAGACATGGTCTTACACAAAATCAAATACGATGTCGA
1 TGTCCCAGACATGGTCTTACACAAAATCAGATACGATGTCGA
61483110 TGTCCC
1 TGTCCC
61483116 TTAAGAAATA
Statistics
Matches: 189, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
41 1 0.01
42 187 0.99
43 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.25
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACAAAATCAGATACGATGTCGA
Found at i:61487430 original size:40 final size:40
Alignment explanation
Indices: 61487385--61487572 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
61487375 ATAACCACAA
* *
61487385 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
61487425 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
61487465 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
** * *
61487505 GCACAAACACCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
61487545 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
61487573 GTATCATTCA
Statistics
Matches: 132, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 130 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:61487470 original size:80 final size:79
Alignment explanation
Indices: 61487365--61487576 Score: 300
Period size: 80 Copynumber: 2.7 Consensus size: 79
61487355 TCTTCGGAAT
* *
61487365 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
**
61487429 AAATGCCTTCGGGTC
65 AAACACCTTCGGGTC
* *
61487444 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
61487509 AAACACCTTCGGGTC
65 AAACACCTTCGGGTC
* * * *
61487524 TTAACCCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
61487577 CATTCAATTG
Statistics
Matches: 118, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
79 5 0.04
80 112 0.95
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
AACACCTTCGGGTC
Found at i:61495507 original size:40 final size:40
Alignment explanation
Indices: 61495462--61495649 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
61495452 ATAACCACAA
* *
61495462 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
61495502 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
61495542 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
61495582 GCACAAACGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
61495622 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
61495650 GTATCATTCA
Statistics
Matches: 134, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 132 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:61495546 original size:80 final size:79
Alignment explanation
Indices: 61495442--61495653 Score: 309
Period size: 80 Copynumber: 2.7 Consensus size: 79
61495432 TCTTCGGAAT
* *
61495442 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
*
61495506 AAATGCCTTCGGGTC
65 AAACGCCTTCGGGTC
* *
61495521 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
61495586 AAACGCCTTCGGGTC
65 AAACGCCTTCGGGTC
* * * *
61495601 TTAACCCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
61495654 CATTCAATTG
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
79 5 0.04
80 113 0.95
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
AACGCCTTCGGGTC
Found at i:61502274 original size:42 final size:42
Alignment explanation
Indices: 61502222--61502458 Score: 323
Period size: 42 Copynumber: 5.6 Consensus size: 42
61502212 CCTCTGTCTT
* * *
61502222 AGACAGGGTCTTACACGAAATCAGATATGATGCCTATGTCCC
1 AGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCC
* *
61502264 AAACATGGTCTTACATGAAATCAGATACGATGCCGATGTCCC
1 AGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCC
* *
61502306 AGACATGGTCTTACACGAAATCAGATACGATGCAGGTGTCCC
1 AGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCC
* * * *
61502348 AGAAATGATCTTACACAAAATCAGATAAGATGCCGATGTCCC
1 AGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCC
* *
61502390 AGACATGGTCTTATA-GAAAATCAGATACGATGTCGATGTCCC
1 AGACATGGTCTTACACG-AAATCAGATACGATGCCGATGTCCC
* *
61502432 AGACATGGTTTTACACAAAATCAGATA
1 AGACATGGTCTTACACGAAATCAGATA
61502459 GGCTGCAAGT
Statistics
Matches: 169, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
42 169 1.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.24
Consensus pattern (42 bp):
AGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCC
Found at i:61502396 original size:126 final size:126
Alignment explanation
Indices: 61502230--61502458 Score: 370
Period size: 126 Copynumber: 1.8 Consensus size: 126
61502220 TTAGACAGGG
* * *
61502230 TCTTACACGAAATCAGATATGATGCCTATGTCCCAAACATGGTCTTACATG-AAATCAGATACGA
1 TCTTACACAAAATCAGATAAGATGCCGATGTCCCAAACATGGTCTTACA-GAAAATCAGATACGA
*
61502294 TGCCGATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCAGGTGTCCCAGAAATGA
65 TGCCGATGTCCCAGACATGGTCTTACACAAAATCAGATACGATGCAGGTGTCCCAGAAATGA
* *
61502356 TCTTACACAAAATCAGATAAGATGCCGATGTCCCAGACATGGTCTTATAGAAAATCAGATACGAT
1 TCTTACACAAAATCAGATAAGATGCCGATGTCCCAAACATGGTCTTACAGAAAATCAGATACGAT
* *
61502421 GTCGATGTCCCAGACATGGTTTTACACAAAATCAGATA
66 GCCGATGTCCCAGACATGGTCTTACACAAAATCAGATA
61502459 GGCTGCAAGT
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
125 1 0.01
126 93 0.99
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (126 bp):
TCTTACACAAAATCAGATAAGATGCCGATGTCCCAAACATGGTCTTACAGAAAATCAGATACGAT
GCCGATGTCCCAGACATGGTCTTACACAAAATCAGATACGATGCAGGTGTCCCAGAAATGA
Found at i:61505172 original size:5 final size:5
Alignment explanation
Indices: 61505146--61505238 Score: 68
Period size: 5 Copynumber: 17.8 Consensus size: 5
61505136 ATCCTCCTTT
61505146 TTTTA -TTTA TTCTTA TTTTTA TTTTA TTTTA TTTTA -TTTA TTTTTA
1 TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA
* *
61505192 TTTTTC TTTTGA TTTTTA TTTTCA TTTAAA TTTTA --TTA TTTTA TTTT
1 -TTTTA TTTT-A -TTTTA TTTT-A TTT-TA TTTTA TTTTA TTTTA TTTT
61505239 GAAAGACATA
Statistics
Matches: 73, Mismatches: 4, Indels: 22
0.74 0.04 0.22
Matches are distributed among these distances:
3 3 0.04
4 8 0.11
5 32 0.44
6 24 0.33
7 6 0.08
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:61505208 original size:7 final size:6
Alignment explanation
Indices: 61505151--61505218 Score: 66
Period size: 6 Copynumber: 11.2 Consensus size: 6
61505141 CCTTTTTTTA
* * *
61505151 TTTATT CTTATT TTTA-T TTTATT TTATTTT ATTTATT TTTATT TTTCTT
1 TTTATT TTTATT TTTATT TTTATT TT-TATT -TTTATT TTTATT TTTATT
* *
61505200 TTGATT TTTATT TTCATT T
1 TTTATT TTTATT TTTATT T
61505219 AAATTTTATT
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
5 5 0.10
6 37 0.74
7 6 0.12
8 2 0.04
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:61505225 original size:18 final size:16
Alignment explanation
Indices: 61505145--61505219 Score: 73
Period size: 16 Copynumber: 4.6 Consensus size: 16
61505135 AATCCTCCTT
* *
61505145 TTTTTATTTATTCTTA
1 TTTTCATTTATTTTTA
*
61505161 TTTTTATTT-TATTTTA
1 TTTTCATTTAT-TTTTA
61505177 TTTT-ATTTATTTTTA
1 TTTTCATTTATTTTTA
*
61505192 TTTTTCTTTTGATTTTTA
1 -TTTTCATTT-ATTTTTA
61505210 TTTTCATTTA
1 TTTTCATTTA
61505220 AATTTTATTA
Statistics
Matches: 51, Mismatches: 3, Indels: 10
0.80 0.05 0.16
Matches are distributed among these distances:
15 10 0.20
16 23 0.45
17 11 0.22
18 7 0.14
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.77
Consensus pattern (16 bp):
TTTTCATTTATTTTTA
Found at i:61508154 original size:13 final size:13
Alignment explanation
Indices: 61508138--61508170 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
61508128 TTTAATTAAA
*
61508138 TTAGTTAATTAGT
1 TTAGATAATTAGT
61508151 TTAGATAATTAGT
1 TTAGATAATTAGT
61508164 TTA-ATAA
1 TTAGATAA
61508171 CCAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:61513920 original size:13 final size:13
Alignment explanation
Indices: 61513898--61513930 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
61513888 AAGGGTTTGT
61513898 TTAT-TAAACTAA
1 TTATCTAAACTAA
61513910 TTATCTAAACTAA
1 TTATCTAAACTAA
*
61513923 TTAACTAA
1 TTATCTAA
61513931 TTTAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:61518147 original size:40 final size:40
Alignment explanation
Indices: 61518044--61518188 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
61518034 TACTCGAATG
* *
61518044 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
* * *
61518085 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACT
* * *
61518125 ATATCCGGGCTAAGTCCTGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
61518165 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
61518189 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 59 0.66
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:61534092 original size:27 final size:28
Alignment explanation
Indices: 61534062--61534131 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
61534052 ATAGTGAATC
*
61534062 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
61534089 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
61534117 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61534132 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:61534203 original size:42 final size:42
Alignment explanation
Indices: 61534139--61534245 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
61534129 GCTGTACAAT
* *
61534139 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
61534181 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
61534223 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
61534246 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:61538221 original size:15 final size:15
Alignment explanation
Indices: 61538201--61538256 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
61538191 GTATCTTGGG
61538201 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
61538216 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
61538231 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
61538246 TTTCTTTATTC
1 TTTCTTTATTC
61538257 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:61540239 original size:46 final size:46
Alignment explanation
Indices: 61540189--61540360 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
61540179 TGAGCATCCA
61540189 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
* * * *
61540235 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TCCG
* * *
61540282 AACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
* * * *
61540328 AGCTCATTGAGTTGAGTCTGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61540361 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 56 0.54
47 29 0.28
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
Found at i:61540341 original size:93 final size:93
Alignment explanation
Indices: 61540182--61540353 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
61540172 GGATGGTTGA
* * *
61540182 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCATTGAGT
61540247 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
61540275 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCGAGCTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCATTGAGT
*
61540340 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
61540354 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61543373 original size:25 final size:24
Alignment explanation
Indices: 61543330--61543382 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
61543320 AAGTTCAAGC
61543330 GAGCCATATCAGAAAGCTCA-AGAA
1 GAGCCATATCAGAAAGCTCATA-AA
* *
61543354 GAGCCTATATCAGGACGCTCATAAA
1 GAGCC-ATATCAGAAAGCTCATAAA
61543379 GAGC
1 GAGC
61543383 TGTGTTTGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 19 0.76
26 1 0.04
ACGTcount: A:0.40, C:0.23, G:0.23, T:0.15
Consensus pattern (24 bp):
GAGCCATATCAGAAAGCTCATAAA
Found at i:61549305 original size:31 final size:31
Alignment explanation
Indices: 61549270--61549331 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
61549260 CTTATTTTTC
61549270 ATGAAAAATCTTTAATCATATGCATATATGA
1 ATGAAAAATCTTTAATCATATGCATATATGA
61549301 ATGAAAAATCTTTAATCATATGCATATATGA
1 ATGAAAAATCTTTAATCATATGCATATATGA
61549332 TTAGGTAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (31 bp):
ATGAAAAATCTTTAATCATATGCATATATGA
Found at i:61554571 original size:19 final size:17
Alignment explanation
Indices: 61554532--61554580 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
61554522 ATTTTGAAAT
* *
61554532 TTTTATTTTTATTTTAG
1 TTTTATTTTTATATTAA
61554549 TTTTAGTTTTTAATATTAA
1 TTTTA-TTTTT-ATATTAA
61554568 TTTTATTTATTAT
1 TTTTATTT-TTAT
61554581 CTTATGCAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 5 0.19
18 10 0.37
19 12 0.44
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (17 bp):
TTTTATTTTTATATTAA
Found at i:61556833 original size:93 final size:93
Alignment explanation
Indices: 61556721--61556892 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61556711 GCCCATAAGT
* *
61556721 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61556786 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
61556814 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61556879 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
61556893 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61556888 original size:46 final size:46
Alignment explanation
Indices: 61556713--61556888 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
61556703 TGTAACCCGC
* * *
61556713 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
61556759 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
61556809 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
61556852 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61556889 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:61559309 original size:29 final size:29
Alignment explanation
Indices: 61559270--61559357 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
61559260 CAAAGATAAC
*
61559270 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
61559299 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
61559328 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
61559358 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:61559328 original size:15 final size:15
Alignment explanation
Indices: 61559270--61559348 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
61559260 CAAAGATAAC
*
61559270 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
61559284 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
61559299 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
61559313 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
61559328 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
61559343 AAGAAA
1 AAGAAA
61559349 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:61559357 original size:15 final size:15
Alignment explanation
Indices: 61559281--61559357 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
61559271 AGAAAACCGA
61559281 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
61559296 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
61559310 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
61559324 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
61559340 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
61559355 ATA
1 ATA
61559358 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:61562417 original size:93 final size:93
Alignment explanation
Indices: 61562305--61562476 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61562295 GCCCATAAGT
* *
61562305 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61562370 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
61562398 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
61562463 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
61562477 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:61562472 original size:46 final size:46
Alignment explanation
Indices: 61562297--61562472 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
61562287 TGTAACCCGC
* * *
61562297 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
61562343 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
61562393 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
61562436 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
61562473 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:61571113 original size:40 final size:40
Alignment explanation
Indices: 61571030--61571175 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 40
61571020 TCGAATGATG
* *
61571030 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
61571070 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
61571110 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* *
61571151 -CCGGGCTATGTCCCGAAGGCTTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61571176 AGTGAGTCGC
Statistics
Matches: 88, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 1 0.01
40 76 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:61572858 original size:12 final size:12
Alignment explanation
Indices: 61572841--61572867 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
61572831 GTTGTTGTTG
61572841 GTGCTTAGGCTT
1 GTGCTTAGGCTT
61572853 GTGCTTAGGCTT
1 GTGCTTAGGCTT
61572865 GTG
1 GTG
61572868 GTTGGACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.15, G:0.37, T:0.41
Consensus pattern (12 bp):
GTGCTTAGGCTT
Found at i:61573834 original size:30 final size:30
Alignment explanation
Indices: 61573800--61573896 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
61573790 AGCTCACTCC
61573800 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
61573830 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
61573860 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
61573890 TAGCTCA
1 TAGCTCA
61573897 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:61575630 original size:12 final size:12
Alignment explanation
Indices: 61575613--61575658 Score: 74
Period size: 12 Copynumber: 3.7 Consensus size: 12
61575603 TTATACAAGT
61575613 AAAAAAAAATTC
1 AAAAAAAAATTC
61575625 AAAAAAAAATTC
1 AAAAAAAAATTC
61575637 AAAAAAAAATTC
1 AAAAAAAAATTC
61575649 GAAAAGAAAA
1 -AAAA-AAAA
61575659 CAAAATCTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
12 24 0.75
13 4 0.12
14 4 0.12
ACGTcount: A:0.76, C:0.07, G:0.04, T:0.13
Consensus pattern (12 bp):
AAAAAAAAATTC
Found at i:61576615 original size:15 final size:15
Alignment explanation
Indices: 61576587--61576642 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
61576577 AAGAGAAAAC
61576587 AAAGAAAAGAAAGAA
1 AAAGAAAAGAAAGAA
61576602 AAAGCAAAAG-AAGAA
1 AAAG-AAAAGAAAGAA
*
61576617 AAA-AAAATGAAATAA
1 AAAGAAAA-GAAAGAA
61576632 AAAGAAAAGAA
1 AAAGAAAAGAA
61576643 GGCAAGAGGC
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
13 4 0.11
14 1 0.03
15 22 0.61
16 9 0.25
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.04
Consensus pattern (15 bp):
AAAGAAAAGAAAGAA
Found at i:61576717 original size:12 final size:12
Alignment explanation
Indices: 61576709--61576733 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
61576699 TTTGAAAAGC
61576709 AAAAAGAAAATG
1 AAAAAGAAAATG
61576721 AAAAAGAAAATG
1 AAAAAGAAAATG
61576733 A
1 A
61576734 GATTGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:61576730 original size:18 final size:18
Alignment explanation
Indices: 61576703--61576758 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
61576693 AAAGCCTTTG
61576703 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAAAGAAAATGA
* * *
61576722 AAAAGAAAATGAGATTGA
1 AAAAGAAAAAGAAAATGA
* *
61576740 AAAAGAGAACGAAAA-GA
1 AAAAGAAAAAGAAAATGA
61576757 AA
1 AA
61576759 TTTGAGAGTG
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.70, C:0.04, G:0.20, T:0.07
Consensus pattern (18 bp):
AAAAGAAAAAGAAAATGA
Found at i:61576743 original size:30 final size:31
Alignment explanation
Indices: 61576709--61576790 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
61576699 TTTGAAAAGC
*
61576709 AAAAAGAAAATGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
* * *
61576739 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAATGAAAAAGAAATATGAGAGTG
*
61576769 AAAAAGAAGATGAAAAAGAAAT
1 AAAAAGAAAATGAAAAAGAAAT
61576791 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 8 0.19
30 26 0.60
31 9 0.21
ACGTcount: A:0.65, C:0.01, G:0.22, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAATGAAAAAGAAATATGAGAGTG
Found at i:61578925 original size:30 final size:30
Alignment explanation
Indices: 61578891--61578986 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
61578881 AGCTCACTCC
61578891 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
61578921 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* *
61578951 CAGCTCAACTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
61578980 TAGCTCA
1 TAGCTCA
61578987 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
29 19 0.37
30 33 0.63
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:61589314 original size:27 final size:28
Alignment explanation
Indices: 61589284--61589383 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
61589274 ATAGTGAGTC
61589284 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
61589311 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
61589339 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
61589370 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61589384 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:61590240 original size:7 final size:7
Alignment explanation
Indices: 61590230--61590254 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
61590220 TCATCACCAC
61590230 AACATCA
1 AACATCA
61590237 AACATCA
1 AACATCA
61590244 AACATCA
1 AACATCA
61590251 AACA
1 AACA
61590255 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:61593525 original size:40 final size:40
Alignment explanation
Indices: 61593480--61593649 Score: 216
Period size: 40 Copynumber: 4.2 Consensus size: 40
61593470 CGGAATACAA
*
61593480 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
61593520 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
61593560 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * *
61593600 CCGGATGTAGTCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
61593640 CCGGATATAA
1 CCGGATATAA
61593650 TTTCCAGCAT
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:61593664 original size:40 final size:40
Alignment explanation
Indices: 61593480--61593686 Score: 174
Period size: 40 Copynumber: 5.2 Consensus size: 40
61593470 CGGAATACAA
*
61593480 CCGGATATAACCA-CATGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCA-GCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
61593520 CCGGATAGAA-CGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAATC-ACCAGCACAATTGCCTTCGGGTCTTAGC
* **
61593560 CCGGATTTAA-CAACTTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATC-ACCAGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
61593600 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
61593640 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
61593679 CCGGATAT
1 CCGGATAT
61593687 CATTCAATTT
Statistics
Matches: 141, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
39 18 0.13
40 120 0.85
41 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:61602714 original size:27 final size:28
Alignment explanation
Indices: 61602684--61602783 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
61602674 ATAGTGAGTC
61602684 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
61602711 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
61602739 CGCACACTTAGTGCTGTACAAATTTAAATCC
1 CGCACACTTAGTGCTATA-AAA-TCAAA-CT
61602770 CGCACACTTAGTGC
1 CGCACACTTAGTGC
61602784 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
30 4 0.06
31 15 0.24
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:61603638 original size:7 final size:7
Alignment explanation
Indices: 61603628--61603652 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
61603618 TCATCACCAC
61603628 AACATCA
1 AACATCA
61603635 AACATCA
1 AACATCA
61603642 AACATCA
1 AACATCA
61603649 AACA
1 AACA
61603653 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:61607798 original size:28 final size:27
Alignment explanation
Indices: 61607759--61607812 Score: 90
Period size: 28 Copynumber: 2.0 Consensus size: 27
61607749 TCTGGTATTG
*
61607759 ATTCTTTATTGGGCTTAGGCCCACCTA
1 ATTCTTTATTGGGCTAAGGCCCACCTA
61607786 ATTCTATTATTGGGCTAAGGCCCACCT
1 ATTCT-TTATTGGGCTAAGGCCCACCT
61607813 GATACTGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 5 0.20
28 20 0.80
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (27 bp):
ATTCTTTATTGGGCTAAGGCCCACCTA
Found at i:61609138 original size:53 final size:53
Alignment explanation
Indices: 61609057--61609165 Score: 173
Period size: 53 Copynumber: 2.1 Consensus size: 53
61609047 ACGAAGGAAC
* * *
61609057 AAAGTTTTTCATCCCATCTACTATGCAAGTCAAACTTTGATAGGAGATCAACT
1 AAAGTTTTTCATCCCATCTACTACGCAAGTCAAACTATGACAGGAGATCAACT
* *
61609110 AAAGTTTTTCATCCCATCTACTACGCAAGTCGAACTATGACAGGAGCTCAACT
1 AAAGTTTTTCATCCCATCTACTACGCAAGTCAAACTATGACAGGAGATCAACT
61609163 AAA
1 AAA
61609166 TTATACAGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (53 bp):
AAAGTTTTTCATCCCATCTACTACGCAAGTCAAACTATGACAGGAGATCAACT
Found at i:61618092 original size:18 final size:18
Alignment explanation
Indices: 61618069--61618153 Score: 118
Period size: 18 Copynumber: 4.7 Consensus size: 18
61618059 CTTGGTCCAT
*
61618069 TGCAGTAACAATAGA-CAG
1 TGCAGTAACAGTA-ATCAG
*
61618087 TGCAGTAATAGTAATCAG
1 TGCAGTAACAGTAATCAG
61618105 TGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAATCAG
*
61618123 TGTAGTAACAGTAATCAG
1 TGCAGTAACAGTAATCAG
*
61618141 TGCAGTAATAGTA
1 TGCAGTAACAGTA
61618154 TACAAGTCCT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
17 1 0.02
18 59 0.98
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (18 bp):
TGCAGTAACAGTAATCAG
Found at i:61618506 original size:27 final size:27
Alignment explanation
Indices: 61618471--61618645 Score: 244
Period size: 27 Copynumber: 6.5 Consensus size: 27
61618461 CACATTGGGA
*
61618471 AAAACAGTCATCTTACCACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
* * *
61618498 AAAATAGTCATTTTACCACACAAGGGA
1 AAAACAGTCATTTTACCACATAAGGGC
*
61618525 AAAACAGTCATTTTACCACATAAGGGT
1 AAAACAGTCATTTTACCACATAAGGGC
* *
61618552 AAATCAGTCATTTTACCATATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
61618579 AAAACAGTCATTTTACCACGTAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
*
61618606 AAACCAGTCATTTTACCACAT-AGGGC
1 AAAACAGTCATTTTACCACATAAGGGC
* *
61618632 AAAAGAATCATTTT
1 AAAACAGTCATTTT
61618646 GATCAATCAG
Statistics
Matches: 130, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 16 0.12
27 114 0.88
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACATAAGGGC
Found at i:61620814 original size:27 final size:26
Alignment explanation
Indices: 61620787--61620963 Score: 106
Period size: 27 Copynumber: 6.6 Consensus size: 26
61620777 GTTTACCAAT
61620787 TTACTGAAATACCCCCAGTTGTAAAA
1 TTACTGAAATACCCCCAGTTGTAAAA
* * * *
61620813 TTAC-CAAAGTTCCCCCGGTTTATAAAA
1 TTACTGAAA-TACCCCCAG-TTGTAAAA
** * * *
61620840 TTACCCAAATATCCTCGATTTGTAAAA
1 TTACTGAAATA-CCCCCAGTTGTAAAA
* * *
61620867 TTACCGAAATACCCTCAGTTTGCAAAA
1 TTACTGAAATACCCCCAG-TTGTAAAA
* * *
61620894 TTACTAAAATACCCTCGATTTGTAAAA
1 TTACTGAAATACCC-CCAGTTGTAAAA
* * *
61620921 TTACTGAAATACTCTCGACTTGTAAAA
1 TTACTGAAATAC-CCCCAGTTGTAAAA
*
61620948 TTA-TCAAAGTACCCCC
1 TTACTGAAA-TACCCCC
61620964 GATTTACAGA
Statistics
Matches: 115, Mismatches: 28, Indels: 16
0.72 0.18 0.10
Matches are distributed among these distances:
25 3 0.03
26 20 0.17
27 83 0.72
28 9 0.08
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.30
Consensus pattern (26 bp):
TTACTGAAATACCCCCAGTTGTAAAA
Found at i:61620868 original size:54 final size:54
Alignment explanation
Indices: 61620805--61620932 Score: 159
Period size: 54 Copynumber: 2.4 Consensus size: 54
61620795 ATACCCCCAG
* * * * *
61620805 TTGTAAAATTACC-AAAGTTCCCCCGGTTTATAAAATTACCCAAATATCCTCGAT
1 TTGTAAAATTACCGAAA-TACCCCCAGTTTACAAAATTACCAAAATACCCTCGAT
* * *
61620859 TTGTAAAATTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTCGAT
1 TTGTAAAATTACCGAAATACCCCCAGTTTACAAAATTACCAAAATACCCTCGAT
*
61620913 TTGTAAAATTACTGAAATAC
1 TTGTAAAATTACCGAAATAC
61620933 TCTCGACTTG
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 61 0.95
55 3 0.05
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TTGTAAAATTACCGAAATACCCCCAGTTTACAAAATTACCAAAATACCCTCGAT
Found at i:61620931 original size:81 final size:80
Alignment explanation
Indices: 61620787--61620963 Score: 196
Period size: 81 Copynumber: 2.2 Consensus size: 80
61620777 GTTTACCAAT
* * * * *
61620787 TTACTGAAATACCCCCAGTTGTAAAATTACCAAAGTTCCCCCGGTTTATAAAATTACCCAAATA-
1 TTACCGAAATACCCCCAGTTGCAAAATTACCAAAATACCCCCGATTTATAAAATTACCCAAATAC
*
61620851 TCCTCGATTTGTAAAA
66 T-CTCGACTTGTAAAA
* * * * **
61620867 TTACCGAAATACCCTCAGTTTGCAAAATTACTAAAATACCCTCGATTTGTAAAATTACTGAAATA
1 TTACCGAAATACCCCCAG-TTGCAAAATTACCAAAATACCCCCGATTTATAAAATTACCCAAATA
61620932 CTCTCGACTTGTAAAA
65 CTCTCGACTTGTAAAA
*
61620948 TTATC-AAAGTACCCCC
1 TTACCGAAA-TACCCCC
61620964 GATTTACAGA
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
80 19 0.24
81 60 0.75
82 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.30
Consensus pattern (80 bp):
TTACCGAAATACCCCCAGTTGCAAAATTACCAAAATACCCCCGATTTATAAAATTACCCAAATAC
TCTCGACTTGTAAAA
Found at i:61620948 original size:54 final size:54
Alignment explanation
Indices: 61620787--61620968 Score: 156
Period size: 54 Copynumber: 3.4 Consensus size: 54
61620777 GTTTACCAAT
* * * * * * * *
61620787 TTACTGAAATACCC-CCAGTTGTAAAATTACC-AAAGTTCCCCCGGTTTATAAAA
1 TTACTAAAATACCCTCGATTTGTAAAATTACCGAAA-TACCCTCAGCTTGTAAAA
** * * *
61620840 TTACCCAAATATCCTCGATTTGTAAAATTACCGAAATACCCTCAGTTTGCAAAA
1 TTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAGCTTGTAAAA
* *
61620894 TTACTAAAATACCCTCGATTTGTAAAATTACTGAAATACTCTC-GACTTGTAAAA
1 TTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAG-CTTGTAAAA
* *
61620948 TTA-TCAAAGTACCCCCGATTT
1 TTACT-AAAATACCCTCGATTT
61620969 ACAGAATTAT
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
53 13 0.12
54 90 0.85
55 3 0.03
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (54 bp):
TTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAGCTTGTAAAA
Found at i:61621014 original size:27 final size:27
Alignment explanation
Indices: 61620846--61621015 Score: 90
Period size: 27 Copynumber: 6.3 Consensus size: 27
61620836 AAAATTACCC
* ** ***
61620846 AAATATCCTCGATTTGTAAAATTACCG
1 AAATACCCTCGATTTACAAAATTATTA
* *
61620873 AAATACCCTC-AGTTTGCAAAATTACTA
1 AAATACCCTCGA-TTTACAAAATTATTA
** * *
61620900 AAATACCCTCGATTTGTAAAATTACTG
1 AAATACCCTCGATTTACAAAATTATTA
* * ** *
61620927 AAATACTCTCGACTTGTAAAATTATCA
1 AAATACCCTCGATTTACAAAATTATTA
* * * **
61620954 AAGTACCCCCGATTTACAGAATTATCG
1 AAATACCCTCGATTTACAAAATTATTA
*** *
61620981 TTTTACCCTTGATTTACAAAATTATTA
1 AAATACCCTCGATTTACAAAATTATTA
61621008 AAATACCC
1 AAATACCC
61621016 CTATAGGGTA
Statistics
Matches: 111, Mismatches: 30, Indels: 4
0.77 0.21 0.03
Matches are distributed among these distances:
26 1 0.01
27 109 0.98
28 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATACCCTCGATTTACAAAATTATTA
Found at i:61621732 original size:27 final size:27
Alignment explanation
Indices: 61621008--61621734 Score: 950
Period size: 27 Copynumber: 26.9 Consensus size: 27
61620998 AAAATTATTA
* *
61621008 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
61621035 AAACACCCTTGTAGGATAGAAATACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
*
61621062 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
61621089 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
61621116 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
61621143 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
61621170 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
61621197 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
61621224 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
61621251 AAATACCCTTGTAAGGTAGAAATACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
61621278 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
61621305 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
61621332 AAATACCCTTGTAAGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
61621359 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
*
61621386 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
61621413 AAATACCCTTGTAGGGTAGAAATATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
61621440 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
61621467 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
*
61621494 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
61621521 AAATACCCCTGTAGGGTAGAATTACTT
1 AAATACCCTTGTAGGGTAGAATTACCG
*
61621548 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
61621575 AAATACCCTTGTAGGGTAGAAATATCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
61621602 AAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCCTTGTAGGGTAGAATTACCG
* *
61621629 AAATACCCCTGTAGGATAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* **
61621656 AAATACCCTTGTAGGGTAGAAATATTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* ** *
61621683 AAATACCCCTACAGGATAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
61621710 AGATACCCTTATGGGGTAAAATTAC
1 AAATACCCTTGTAGGGTAGAATTAC
61621735 TGTGACAGCC
Statistics
Matches: 620, Mismatches: 80, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 620 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:61621734 original size:81 final size:81
Alignment explanation
Indices: 61621008--61621719 Score: 1055
Period size: 81 Copynumber: 8.8 Consensus size: 81
61620998 AAAATTATTA
* * * * * * * *
61621008 AAATACCCCTATAGGGTAGAATTACCGAAACACCCTTGTAGGATAGAAATACCAAAATACCCTTG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
61621073 TAGGGTAGAAATACCG
66 TAGGGTAGAAATACCG
* * *
61621089 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
61621154 TAGGGTAGAAATACCG
66 TAGGGTAGAAATACCG
61621170 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
61621235 TAGGGTAGAAATACCG
66 TAGGGTAGAAATACCG
* * * * *
61621251 AAATACCCTTGTAAGGTAGAAATACCAAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
* *
61621316 TAGGGTAGAATTACTG
66 TAGGGTAGAAATACCG
* * * **
61621332 AAATACCCTTGTAAGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCTTG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
61621397 TAGGGTAGAAATACCG
66 TAGGGTAGAAATACCG
* *
61621413 AAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
61621478 TAGGGTAGAAATACCG
66 TAGGGTAGAAATACCG
** *
61621494 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTTAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
*
61621559 TAGGGTAGAATTACCG
66 TAGGGTAGAAATACCG
* ** *
61621575 AAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTG
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
* *
61621640 TAGGATAGAATTACCG
66 TAGGGTAGAAATACCG
** ** * *
61621656 AAATACCCTTGTAGGGTAGAAATATTGAAATACCCCTACAGGATAGAATTACCGAGATACCCTT
1 AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTT
61621720 ATGGGGTAAA
Statistics
Matches: 582, Mismatches: 49, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 582 1.00
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
AAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTG
TAGGGTAGAAATACCG
Found at i:61623112 original size:28 final size:28
Alignment explanation
Indices: 61623051--61623148 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
61623041 TCACAAATTG
** * *
61623051 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
61623080 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
61623108 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
61623136 GCACTAAGTGTGC
1 GCACTAAGTGTGC
61623149 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:61630762 original size:28 final size:28
Alignment explanation
Indices: 61630701--61630798 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
61630691 TCACAAATTG
** * *
61630701 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
61630730 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
61630758 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
61630786 GCACTAAGTGTGC
1 GCACTAAGTGTGC
61630799 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:61637445 original size:93 final size:93
Alignment explanation
Indices: 61637333--61637504 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61637323 CGCCCATAAG
* *
61637333 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
61637398 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
61637426 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
61637491 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
61637505 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:61637501 original size:46 final size:46
Alignment explanation
Indices: 61637326--61637501 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
61637316 TGTAACCCGC
* * *
61637326 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
61637372 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
61637422 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
61637465 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
61637502 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:61640684 original size:54 final size:54
Alignment explanation
Indices: 61640617--61640789 Score: 161
Period size: 54 Copynumber: 3.2 Consensus size: 54
61640607 TTTAGTTTAC
*
61640617 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGTTTGTAAAATTACTGAAATACCCTCGATTTG
* * * * * *
61640671 TAAATTTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACTCTCGATTTA
1 TAAAATTACCGAAATACCCTTAG-TTTGTAAAATTACTGAAA-TACCCTCGATTTG
* *** * * * ***
61640725 TAGAATTACCGTTTTACCCTCAGTTTATAGAATTACTGTTTTACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGTTTGTAAAATTACTGAAATACCCTCGATTTG
61640779 TAAAATTACCG
1 TAAAATTACCG
61640790 TTTTACCCTC
Statistics
Matches: 91, Mismatches: 24, Indels: 8
0.74 0.20 0.07
Matches are distributed among these distances:
53 8 0.09
54 79 0.87
55 4 0.04
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGTTTGTAAAATTACTGAAATACCCTCGATTTG
Done.