Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 203 of 425
Found at i:61892135 original size:33 final size:33
Alignment explanation
Indices: 61892093--61892160 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
61892083 CGGGTACCAA
61892093 ATACCCTAAATCAAATAGCAAAATTTCTTACGT
1 ATACCCTAAATCAAATAGCAAAATTTCTTACGT
61892126 ATACCCTAAATCAAATAGCAAAATTTCTTACGT
1 ATACCCTAAATCAAATAGCAAAATTTCTTACGT
61892159 AT
1 AT
61892161 CAGGTACACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.31
Consensus pattern (33 bp):
ATACCCTAAATCAAATAGCAAAATTTCTTACGT
Found at i:61901646 original size:5 final size:5
Alignment explanation
Indices: 61901636--61901660 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
61901626 AACCTTATTC
61901636 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
61901661 GAAGTGTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:61903933 original size:93 final size:93
Alignment explanation
Indices: 61903821--61903992 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
61903811 CGCCCATAAG
* *
61903821 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
61903886 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
61903914 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTTA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
61903979 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
61903993 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:61903989 original size:46 final size:46
Alignment explanation
Indices: 61903814--61903989 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
61903804 TCTAACCCGC
* * *
61903814 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
61903860 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
61903910 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
61903953 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
61903990 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:61905286 original size:7 final size:7
Alignment explanation
Indices: 61905274--61905299 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
61905264 TTAGGATATT
61905274 ACATGGA
1 ACATGGA
61905281 ACATGGA
1 ACATGGA
61905288 ACATGGA
1 ACATGGA
61905295 ACATG
1 ACATG
61905300 TGACATGTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.15, G:0.27, T:0.15
Consensus pattern (7 bp):
ACATGGA
Found at i:61907192 original size:39 final size:40
Alignment explanation
Indices: 61907092--61907282 Score: 185
Period size: 39 Copynumber: 4.8 Consensus size: 40
61907082 TCGAATGATG
* * *
61907092 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
61907132 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61907172 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
61907211 CCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
** *
61907251 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
61907283 CGTTATATCC
Statistics
Matches: 123, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 63 0.51
40 53 0.43
41 7 0.06
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61907298 original size:78 final size:78
Alignment explanation
Indices: 61907092--61907283 Score: 199
Period size: 79 Copynumber: 2.4 Consensus size: 78
61907082 TCGAATGATG
* * * * ** *
61907092 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTAAG-TCCGAAGGCATT
*
61907156 CGTGCGAGTTAATAAA
63 CGTGCGAGTCAATAAA
* *
61907172 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCGAAGGCATTCGT
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAGTCCGAAGGCATTCGT
*
61907237 GCGAGTCACTATAA
66 GCGAGTCAATA-AA
** *
61907251 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTC
61907284 GTTATATCCG
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
78 32 0.33
79 46 0.48
80 18 0.19
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAGTCCGAAGGCATTCGT
GCGAGTCAATAAA
Found at i:61911886 original size:5 final size:5
Alignment explanation
Indices: 61911876--61911900 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
61911866 ATACCAATTT
61911876 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
61911901 GAACACACAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:61920213 original size:35 final size:35
Alignment explanation
Indices: 61920167--61920237 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
61920157 CTTAGTAAGT
61920167 CTCAAGGAATATAATCAACTCTAATTACAGCAATA
1 CTCAAGGAATATAATCAACTCTAATTACAGCAATA
61920202 CTCAAGGAATATAATCAACTCTAATTACAGCAATA
1 CTCAAGGAATATAATCAACTCTAATTACAGCAATA
61920237 C
1 C
61920238 ATTCACATAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.45, C:0.21, G:0.08, T:0.25
Consensus pattern (35 bp):
CTCAAGGAATATAATCAACTCTAATTACAGCAATA
Found at i:61920671 original size:80 final size:79
Alignment explanation
Indices: 61920571--61920794 Score: 247
Period size: 80 Copynumber: 2.8 Consensus size: 79
61920561 CCGCACCAAG
* * * * *
61920571 GCCTACGGGACTTTACCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTA
1 GCCTTCGGGTCTTAACCCGGATAT-ACAATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
*
61920636 ACAACTTGCACGAA-T
65 ACAACTAGCAC-AATT
* * * *
61920651 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA
1 GCCTTCGGGTCTTAACCCGGATAT-ACAATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
* *
61920716 GCTACTAGCACAATT
65 ACAACTAGCACAATT
* *
61920731 GCCTTCGGGTCTTAACCCGGATATA-AATTT-CAGCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCCTTCGGGTCTTAACCCGGATATACAATTTGCA-CA-AA-TGCCTTCGGGTCTTAGCCCGGATA
61920794 T
63 T
61920795 CATTCAATTT
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
77 2 0.02
78 5 0.04
79 5 0.04
80 109 0.90
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (79 bp):
GCCTTCGGGTCTTAACCCGGATATACAATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
CAACTAGCACAATT
Found at i:61920753 original size:40 final size:40
Alignment explanation
Indices: 61920586--61920756 Score: 236
Period size: 40 Copynumber: 4.3 Consensus size: 40
61920576 CGGGACTTTA
* * * *
61920586 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAG
*
61920626 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAG
*
61920666 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAG
* * * *
61920706 CCCGGATATAGCTACTAGCAC-AATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACGAA-TGCCTTCGGGTCTTAG
61920746 CCCGGATATAA
1 CCCGGATATAA
61920757 ATTTCAGCAT
Statistics
Matches: 119, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.02
40 117 0.98
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAG
Found at i:61920771 original size:40 final size:40
Alignment explanation
Indices: 61920603--61920794 Score: 210
Period size: 40 Copynumber: 4.8 Consensus size: 40
61920593 ATCACGATTT
* * * *
61920603 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
61920643 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
61920683 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
61920723 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAAT-TTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACT-A
* * *
61920763 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
61920795 CATTCAATTT
Statistics
Matches: 137, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 132 0.96
41 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:61928336 original size:80 final size:79
Alignment explanation
Indices: 61928236--61928459 Score: 247
Period size: 80 Copynumber: 2.8 Consensus size: 79
61928226 CCGCACCAAG
* * * * *
61928236 GCCTACGGGACTTTACCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATTTA
1 GCCTTCGGGTCTTAACCCGGATAT-ACAATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
*
61928301 ACAACTTGCACGAA-T
65 ACAACTAGCAC-AATT
* * * *
61928316 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATA
1 GCCTTCGGGTCTTAACCCGGATAT-ACAATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
* *
61928381 GCTACTAGCACAATT
65 ACAACTAGCACAATT
* *
61928396 GCCTTCGGGTCTTAACCCGGATATA-AATTT-CAGCATAATTGTCTTCGGGGCTTAGCCCGGATA
1 GCCTTCGGGTCTTAACCCGGATATACAATTTGCA-CA-AA-TGCCTTCGGGTCTTAGCCCGGATA
61928459 T
63 T
61928460 CATTCAATTT
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
77 2 0.02
78 5 0.04
79 5 0.04
80 109 0.90
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (79 bp):
GCCTTCGGGTCTTAACCCGGATATACAATTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAA
CAACTAGCACAATT
Found at i:61928418 original size:40 final size:40
Alignment explanation
Indices: 61928251--61928421 Score: 236
Period size: 40 Copynumber: 4.3 Consensus size: 40
61928241 CGGGACTTTA
* * * *
61928251 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAG
*
61928291 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAG
*
61928331 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAG
* * * *
61928371 CCCGGATATAGCTACTAGCAC-AATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACGAA-TGCCTTCGGGTCTTAG
61928411 CCCGGATATAA
1 CCCGGATATAA
61928422 ATTTCAGCAT
Statistics
Matches: 119, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.02
40 117 0.98
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAG
Found at i:61928436 original size:40 final size:40
Alignment explanation
Indices: 61928268--61928459 Score: 210
Period size: 40 Copynumber: 4.8 Consensus size: 40
61928258 ATCACGATTT
* * * *
61928268 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
61928308 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATTTAACAACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
*
61928348 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCTACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
* * *
61928388 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAAT-TTCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACT-A
* * *
61928428 GCATAATTGTCTTCGGGGCTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
61928460 CATTCAATTT
Statistics
Matches: 137, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 132 0.96
41 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAACTACTA
Found at i:61930726 original size:38 final size:35
Alignment explanation
Indices: 61930667--61930784 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
61930657 TCAATCATGC
*
61930667 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
61930706 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
61930737 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
61930768 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
61930785 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:61930728 original size:31 final size:31
Alignment explanation
Indices: 61930690--61930784 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
61930680 CCTTTTCATA
*
61930690 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
61930721 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
61930752 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
61930783 TT
1 TT
61930785 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:61931054 original size:23 final size:24
Alignment explanation
Indices: 61930975--61931116 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
61930965 GCTTTATCAT
* *
61930975 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
61931000 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
61931024 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
61931047 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
61931071 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
61931094 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
61931117 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 46 0.42
24 51 0.47
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:61931116 original size:47 final size:47
Alignment explanation
Indices: 61930975--61931116 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
61930965 GCTTTATCAT
* * *
61930975 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
61931024 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
61931071 ATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
61931117 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
46 16 0.18
47 50 0.57
48 9 0.10
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:61931191 original size:20 final size:20
Alignment explanation
Indices: 61931166--61931226 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
61931156 TTATGATTAC
61931166 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
61931186 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
61931206 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
61931226 A
1 A
61931227 CCATATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:61931301 original size:25 final size:25
Alignment explanation
Indices: 61931269--61931316 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61931259 ATACATAAAC
* * *
61931269 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
61931294 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
61931317 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:61932574 original size:27 final size:27
Alignment explanation
Indices: 61932554--61933090 Score: 629
Period size: 27 Copynumber: 19.9 Consensus size: 27
61932544 AGGGTATTTT
*
61932554 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
61932581 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
61932608 AGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
61932635 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
61932662 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
61932689 -GATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* * *
61932716 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* * *
61932743 GGTAATTCTATAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
61932770 AGTAATTCTGTAAA-CTGAGGGTAAAAT
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
61932797 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
61932824 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
61932851 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
61932878 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
61932905 AATAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* * *
61932932 GGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
61932959 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
* *
61932986 GGTAACTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
61933013 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
61933040 -GATAATTCTATAAATCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * **
61933067 GGTAATTTTACAAATCGAGGGTAA
1 AGTAATTCTGTAAATCGAGGGTAA
61933091 CTGAGGGTAA
Statistics
Matches: 453, Mismatches: 44, Indels: 26
0.87 0.08 0.05
Matches are distributed among these distances:
26 6 0.01
27 441 0.97
28 6 0.01
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:61933103 original size:64 final size:64
Alignment explanation
Indices: 61933029--61933151 Score: 167
Period size: 64 Copynumber: 1.9 Consensus size: 64
61933019 TTTACAAATC
61933029 GAGGGTAAAACGATAATTCTATAAATCGAGG-GTAAAACGGTAATTTTACAAATCGAGGGTAACT
1 GAGGGTAAAACGATAATTCTATAAATCG-GGAGTAAAACGGTAATTTTACAAATCGAGGGTAACT
* * **** *
61933093 GAGGGTAAAACGGTAATTCTGTAAATCGGGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 GAGGGTAAAACGATAATTCTATAAATCGGGAGTAAAACGGTAATTTTACAAATCGAGGG
61933152 CATTTCAGTA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
63 2 0.04
64 49 0.96
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.27
Consensus pattern (64 bp):
GAGGGTAAAACGATAATTCTATAAATCGGGAGTAAAACGGTAATTTTACAAATCGAGGGTAACT
Found at i:61936003 original size:25 final size:25
Alignment explanation
Indices: 61935975--61936069 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
61935965 GAGGAAGTGC
* * *
61935975 AAAAGGGCTATGCCCTAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
61936000 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
61936025 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
61936050 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
61936070 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:61936082 original size:24 final size:25
Alignment explanation
Indices: 61935974--61936082 Score: 93
Period size: 25 Copynumber: 4.4 Consensus size: 25
61935964 GGAGGAAGTG
* * * *
61935974 CAAAAG-GGCTATGCCCTAATTTAC
1 CAAAAGAGGCTTTGCCCCAGTTTAT
*
61935998 CGAAAAG-GGCTTTGCCCCAGTTTAC
1 C-AAAAGAGGCTTTGCCCCAGTTTAT
61936023 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAGTTTAT
*
61936048 CAAAA-AGGGCTTTGCCCTAG-TTAT
1 CAAAAGA-GGCTTTGCCCCAGTTTAT
*
61936072 TAAAAGAGGCT
1 CAAAAGAGGCT
61936083 AGGCCTCCAG
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
24 17 0.23
25 58 0.77
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:61936093 original size:50 final size:50
Alignment explanation
Indices: 61935975--61936094 Score: 118
Period size: 50 Copynumber: 2.4 Consensus size: 50
61935965 GAGGAAGTGC
* * * * *
61935975 AAAAGGGCTATGCCCTAATTTACCGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTAGGCCCCAGTTTATCAAAAAGGGCTTTGCCCCAGTTTACCG
** * **
61936025 AAAAGGGCTTTGCCCCAGTTTATCAAAAAGGGCTTTGCCCTAG-TTA-TT
1 AAAAGGGCTAGGCCCCAGTTTATCAAAAAGGGCTTTGCCCCAGTTTACCG
61936073 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTAGGCC-CCAGTT
61936095 ATATGTTAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
48 5 0.09
49 10 0.17
50 43 0.74
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTAGGCCCCAGTTTATCAAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:61936332 original size:31 final size:31
Alignment explanation
Indices: 61936289--61936361 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
61936279 TTGTTACAGT
61936289 AAAGGCTTCGGCCCAGCGATATGAATAATGA
1 AAAGGCTTCGGCCCAGCGATATGAATAATGA
* * *
61936320 AAAGACTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGCGATATGAATAATGA
61936351 AAAGGCTTCGG
1 AAAGGCTTCGG
61936362 ATTCCTACCT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGCGATATGAATAATGA
Found at i:61937407 original size:30 final size:31
Alignment explanation
Indices: 61937373--61937435 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
61937363 CCTTTTCATA
61937373 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
61937403 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
61937434 TT
1 TT
61937436 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:61937677 original size:24 final size:24
Alignment explanation
Indices: 61937626--61937768 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
61937616 GCTTTATCAT
*
61937626 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
61937651 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
61937675 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
61937698 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
61937722 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
61937746 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
61937769 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:61937705 original size:47 final size:48
Alignment explanation
Indices: 61937626--61937767 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
61937616 GCTTTATCAT
* *
61937626 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
61937675 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
61937722 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
61937768 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:61937726 original size:71 final size:72
Alignment explanation
Indices: 61937625--61937768 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
61937615 TGCTTTATCA
*
61937625 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
61937690 GCCCTTT
66 GCCCTTT
* * **
61937697 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
61937760 AGCCCTTT
65 AGCCCTTT
61937768 T
1 T
61937769 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:61937849 original size:11 final size:11
Alignment explanation
Indices: 61937819--61937872 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
61937809 TATGATTACC
61937819 TCATGTGCATA
1 TCATGTGCATA
*
61937830 TCA--TACATA
1 TCATGTGCATA
61937839 TCATGTGCATA
1 TCATGTGCATA
*
61937850 TCA--TACAT-
1 TCATGTGCATA
61937858 TCATGTGCATA
1 TCATGTGCATA
61937869 TCAT
1 TCAT
61937873 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:61937863 original size:19 final size:20
Alignment explanation
Indices: 61937819--61937877 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
61937809 TATGATTACC
61937819 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
61937839 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
61937858 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
61937878 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:61937952 original size:25 final size:25
Alignment explanation
Indices: 61937920--61937967 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61937910 ATACATAAAC
* * *
61937920 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
61937945 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
61937968 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:61945504 original size:30 final size:31
Alignment explanation
Indices: 61945470--61945533 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 31
61945460 GCCCTTTTCA
61945470 TTTTCATA-TTCATAACACTGGGCCGAAGCC
1 TTTTCATATTTCATAACACTGGGCCGAAGCC
**
61945500 TTTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTTCATATTTCATAACACTGGGCCGAAGCC
61945531 TTT
1 TTT
61945534 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 8 0.26
31 23 0.74
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTTCATATTTCATAACACTGGGCCGAAGCC
Found at i:61945776 original size:24 final size:24
Alignment explanation
Indices: 61945725--61945843 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
61945715 GCTTTATCAT
*
61945725 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
61945750 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
61945774 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
61945797 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
61945821 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
61945844 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
23 23 0.26
24 52 0.60
25 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:61945804 original size:47 final size:48
Alignment explanation
Indices: 61945725--61945843 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
61945715 GCTTTATCAT
*
61945725 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCA
* **
61945774 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
61945821 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
61945844 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 44 0.68
48 9 0.14
49 12 0.18
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCA
Found at i:61945924 original size:11 final size:11
Alignment explanation
Indices: 61945894--61945947 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
61945884 TATGATTACC
61945894 TCATGTGCATA
1 TCATGTGCATA
*
61945905 TCA--TACATA
1 TCATGTGCATA
61945914 TCATGTGCATA
1 TCATGTGCATA
*
61945925 TCA--TACAT-
1 TCATGTGCATA
61945933 TCATGTGCATA
1 TCATGTGCATA
61945944 TCAT
1 TCAT
61945948 ACATACCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 3 0.09
9 12 0.35
10 4 0.12
11 15 0.44
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:61945938 original size:19 final size:20
Alignment explanation
Indices: 61945894--61945952 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
61945884 TATGATTACC
61945894 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
61945914 TCATGTGCATATCATACAT-
1 TCATGTGCATATCATACATA
61945933 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
61945953 CCATATTTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:61946027 original size:25 final size:25
Alignment explanation
Indices: 61945995--61946042 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
61945985 ATACATAAAC
* * *
61945995 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
61946020 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
61946043 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:61954601 original size:25 final size:25
Alignment explanation
Indices: 61954573--61954662 Score: 126
Period size: 25 Copynumber: 3.6 Consensus size: 25
61954563 GAGGAAGTGC
* *
61954573 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCG
* *
61954598 AAAAGGGCTTTGCCTCAGTTTATTG
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
61954623 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCG
*
61954648 AAAAGGTCTTTGCCC
1 AAAAGGGCTTTGCCC
61954663 TTGTAACACC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 57 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCG
Found at i:61956114 original size:28 final size:27
Alignment explanation
Indices: 61956051--61956120 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
61956041 ATAGTGAGTC
*
61956051 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
61956078 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
61956106 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61956121 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:61964052 original size:28 final size:27
Alignment explanation
Indices: 61963989--61964058 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
61963979 ATAGTGAGTC
*
61963989 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
61964016 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
61964044 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
61964059 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:61965998 original size:31 final size:31
Alignment explanation
Indices: 61965960--61966029 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
61965950 TTGTTACAGT
*
61965960 AAAGGCTTTGGCCCAGCGATATGAATAATGA
1 AAAGGCTTTGGCCCAACGATATGAATAATGA
* *
61965991 AAAGGCTTTGGCCCAATGATATGAATAATGT
1 AAAGGCTTTGGCCCAACGATATGAATAATGA
61966022 AAAGGCTT
1 AAAGGCTT
61966030 CGGTCCAGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (31 bp):
AAAGGCTTTGGCCCAACGATATGAATAATGA
Found at i:61970378 original size:44 final size:44
Alignment explanation
Indices: 61970315--61970403 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
61970305 ATTAGCATAG
61970315 TAAATGGGATGGAAAATTCTATTCATTCATTGTCCTAACACAGC
1 TAAATGGGATGGAAAATTCTATTCATTCATTGTCCTAACACAGC
61970359 TAAATGGGATGGAAAATTCTATTCATTCATTGTCCTAACACAGC
1 TAAATGGGATGGAAAATTCTATTCATTCATTGTCCTAACACAGC
61970403 T
1 T
61970404 CCTATTGCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.33
Consensus pattern (44 bp):
TAAATGGGATGGAAAATTCTATTCATTCATTGTCCTAACACAGC
Found at i:61973621 original size:27 final size:27
Alignment explanation
Indices: 61973583--61973636 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
61973573 CCACAGAGTA
61973583 AATATATTCGGGATTGGGTGGACATTC
1 AATATATTCGGGATTGGGTGGACATTC
61973610 AATATATTCGGGATTGGGTGGACATTC
1 AATATATTCGGGATTGGGTGGACATTC
61973637 TTCAAATGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.11, G:0.30, T:0.33
Consensus pattern (27 bp):
AATATATTCGGGATTGGGTGGACATTC
Found at i:61974051 original size:36 final size:36
Alignment explanation
Indices: 61974004--61974075 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
61973994 GAATTTTATG
61974004 ATGAGAGCATTTATATAATAACTCCTTAAATCGTTC
1 ATGAGAGCATTTATATAATAACTCCTTAAATCGTTC
61974040 ATGAGAGCATTTATATAATAACTCCTTAAATCGTTC
1 ATGAGAGCATTTATATAATAACTCCTTAAATCGTTC
61974076 TTATGCATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (36 bp):
ATGAGAGCATTTATATAATAACTCCTTAAATCGTTC
Found at i:61974627 original size:20 final size:20
Alignment explanation
Indices: 61974602--61974646 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
61974592 GAAAATCATG
* **
61974602 AAAAATAATGAAGTTAAAAT
1 AAAAATAATAAAAATAAAAT
61974622 AAAAATAATAAAAATAAAAT
1 AAAAATAATAAAAATAAAAT
61974642 AAAAA
1 AAAAA
61974647 CAAACCAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (20 bp):
AAAAATAATAAAAATAAAAT
Found at i:61978449 original size:55 final size:53
Alignment explanation
Indices: 61978320--61978616 Score: 314
Period size: 55 Copynumber: 5.5 Consensus size: 53
61978310 AACTTACCAT
* * * *
61978320 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGG-AACCTTGCCTTATAGAACTCATCAA
* *
61978373 CGTCATGCCTTG-CAATGGTCTTACATGGAACCTTCGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGAC-ATGGTCTTACATGGAACCTT-GCCTTATAG-AACTCATCAA
* * * *
61978428 TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGG-AACCTTGCCTTATAGAACTCATCAA
* * * *
61978481 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCTTCAA
1 TGCCATGCCTTGACATGGTCTTACATGGAACC-TTGCCTTAT-AGAACTCATCAA
* * * *
61978536 TGCCATGTCTTGACATGGTCTTACAT-GATTTCATTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGA--ACCTTGCCTTATAGAACTCATCAA
*
61978590 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
61978617 ATATCCTTAT
Statistics
Matches: 202, Mismatches: 30, Indels: 22
0.80 0.12 0.09
Matches are distributed among these distances:
52 7 0.03
53 73 0.36
54 36 0.18
55 80 0.40
56 6 0.03
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGAACCTTGCCTTATAGAACTCATCAA
Found at i:61978514 original size:108 final size:108
Alignment explanation
Indices: 61978320--61978616 Score: 452
Period size: 108 Copynumber: 2.7 Consensus size: 108
61978310 AACTTACCAT
* * * *
61978320 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAACGTCATGCCTT-
1 TGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTATGAACTCACCAATGCCATGCCTTG
*
61978384 GCAATGGTCTTACATGGAACCTTCGCCTTATAGTAACTCATCAA
66 GC-ATGGTCTTACATGGAACCTTCGCCTTATAATAACTCATCAA
*
61978428 TGCCATGTCTTGACATGGTCTTACATGGTATCTTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTATGAACTCACCAATGCCATGCCTTG
* * *
61978493 GCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCTTCAA
66 GCATGGTCTTACATGGAACCTTCGCCTTATAATAACTCATCAA
* * * *
61978536 TGCCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTAT-GAACTCACCAATGCCATGCCTT
61978601 GGCATGGTCTTACATG
65 GGCATGGTCTTACATG
61978617 ATATCCTTAT
Statistics
Matches: 174, Mismatches: 13, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
108 136 0.78
109 38 0.22
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTATGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATGGAACCTTCGCCTTATAATAACTCATCAA
Found at i:61978656 original size:47 final size:47
Alignment explanation
Indices: 61978603--61978724 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
61978593 CATGCCTTGG
* *
61978603 CATGGTCTTACATGATATCCTTATCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
61978650 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
61978697 CATGGTCTTACATGATATCCTTGTCTTA
1 CATGGTCTTACATGATATCCTTGTCTTA
61978725 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:61978800 original size:47 final size:47
Alignment explanation
Indices: 61978728--61978860 Score: 121
Period size: 45 Copynumber: 2.9 Consensus size: 47
61978718 TGTCTTAGTG
* ** * * *
61978728 CCAATGCCATATCTTGATGTAGTCTTACATGGAGTCCTTAATCAATG
1 CCAATGCCATGTCTTGACATGGTCTTACATGGAGTCCTTAAGCAATA
** * **
61978775 CTGATGCCATGTCTTGACATGGTCTTACACGG-GATCCTT--GCCTTA
1 CCAATGCCATGTCTTGACATGGTCTTACATGGAG-TCCTTAAGCAATA
61978820 CCAATGCCATGTCTTGACATGGTCTTACATGGTA-TCCTTAA
1 CCAATGCCATGTCTTGACATGGTCTTACATGG-AGTCCTTAA
61978861 CCGTCAATTC
Statistics
Matches: 67, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
45 36 0.54
46 1 0.01
47 30 0.45
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (47 bp):
CCAATGCCATGTCTTGACATGGTCTTACATGGAGTCCTTAAGCAATA
Found at i:61982265 original size:40 final size:39
Alignment explanation
Indices: 61982156--61982379 Score: 173
Period size: 40 Copynumber: 5.6 Consensus size: 39
61982146 ATGATTTTAC
* * * * *
61982156 AAGCCGTGTATCAACAAAGCTCCTCC-GTGAGCTAAGGAT
1 AAGCTGTGTATCAGCGAAGCTCC-CCTATGAGCTATGGAT
** * ** *
61982195 AAATTGTGCATCAATGAAGCTCCCCTATGAGTCTATGGAC
1 AAGCTGTGTATCAGCGAAGCTCCCCTATGAG-CTATGGAT
61982235 AAGCTGTGTATCAGCGAAGCTCCCCTATGAGCTTATGGAT
1 AAGCTGTGTATCAGCGAAGCTCCCCTATGAGC-TATGGAT
*** * * *
61982275 AAGCTGTGTATCAAAAAAGCTCCTCTTTGAGCTAAGGAT
1 AAGCTGTGTATCAGCGAAGCTCCCCTATGAGCTATGGAT
* * *
61982314 AAGCTATGTATTAGCGAAGCTCCCC-ACGTGAGCTTAAGTGAT
1 AAGCTGTGTATCAGCGAAGCTCCCCTA--TGAGC-TATG-GAT
*
61982356 GAAGCTGTGTATTAGCGAAGCTCC
1 -AAGCTGTGTATCAGCGAAGCTCC
61982380 TCATGCGAGC
Statistics
Matches: 148, Mismatches: 29, Indels: 12
0.78 0.15 0.06
Matches are distributed among these distances:
38 2 0.01
39 47 0.32
40 70 0.47
41 4 0.03
42 3 0.02
43 22 0.15
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (39 bp):
AAGCTGTGTATCAGCGAAGCTCCCCTATGAGCTATGGAT
Found at i:61982318 original size:79 final size:82
Alignment explanation
Indices: 61982211--61982367 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 82
61982201 TGCATCAATG
* * *
61982211 AAGCTCCCCTATGAGTCTATGGACAAGCTGTGTATCAGCGAAGCTCCCCTA-TGAGCTTATG-GA
1 AAGCTCCCCTATGAGTCTAAGGACAAGCTATGTATCAGCGAAGCTCCCC-ACTGAGCTTAAGTGA
61982274 T-AAGCTGTGTATCAAAA
65 TGAAGCTGTGTATCAAAA
* * * *
61982291 AAGCTCCTCTTTGAG-CTAAGGATAAGCTATGTATTAGCGAAGCTCCCCACGTGAGCTTAAGTGA
1 AAGCTCCCCTATGAGTCTAAGGACAAGCTATGTATCAGCGAAGCTCCCCAC-TGAGCTTAAGTGA
61982355 TGAAGCTGTGTAT
65 TGAAGCTGTGTAT
61982368 TAGCGAAGCT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 1 0.02
79 29 0.44
80 22 0.33
81 3 0.05
82 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (82 bp):
AAGCTCCCCTATGAGTCTAAGGACAAGCTATGTATCAGCGAAGCTCCCCACTGAGCTTAAGTGAT
GAAGCTGTGTATCAAAA
Found at i:61985335 original size:39 final size:39
Alignment explanation
Indices: 61985281--61985359 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
61985271 AATGTGTATG
61985281 TTTATTATGAGGTTTGAAATGATTGATTGATTGTGGTAA
1 TTTATTATGAGGTTTGAAATGATTGATTGATTGTGGTAA
*
61985320 TTTATTATGAGGTTTGAAATGATTGGTTGATTGTGGTAA
1 TTTATTATGAGGTTTGAAATGATTGATTGATTGTGGTAA
61985359 T
1 T
61985360 CGATTATAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (39 bp):
TTTATTATGAGGTTTGAAATGATTGATTGATTGTGGTAA
Found at i:61987960 original size:40 final size:40
Alignment explanation
Indices: 61987909--61988153 Score: 334
Period size: 40 Copynumber: 6.1 Consensus size: 40
61987899 GGATGATAAT
*
61987909 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATA
* * *
61987948 TTCCGGGCTAAGTCCCGAAGGCACTTATGCTAGTGACTA-A
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATA
*
61987988 TTCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATA
* *
61988029 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATA
* *
61988069 TCCGGGCTAAGTCCCGAAGACATTTGTGCGAACT-ACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACTATA
* * *
61988109 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATA
61988149 TCCGG
1 TCCGG
61988154 TTAAAGCCCG
Statistics
Matches: 187, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 2 0.01
40 182 0.97
41 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATA
Found at i:61997314 original size:27 final size:27
Alignment explanation
Indices: 61997284--61997425 Score: 157
Period size: 27 Copynumber: 5.2 Consensus size: 27
61997274 GTGATGAAGT
*
61997284 CACCGGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATATTGTGGCAGAGC
*
61997311 CACCAGA-ACAGACATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
*
61997338 CACCAGAT-CAGATAATTGTGGCATAGC
1 CACCAGATACAGAT-ATTGTGGCAGAGC
*
61997365 CACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGATAT-TGTGGCAGAGC
* *
61997392 CACCAGAT-TAGATAAATTGTGGCATAGC
1 CACCAGATACAGAT--ATTGTGGCAGAGC
61997420 CACCAG
1 CACCAG
61997426 GACGCTTCCT
Statistics
Matches: 98, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
26 9 0.09
27 69 0.70
28 18 0.18
29 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CACCAGATACAGATATTGTGGCAGAGC
Found at i:61997376 original size:54 final size:54
Alignment explanation
Indices: 61997284--61997428 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
61997274 GTGATGAAGT
* * *
61997284 CACCGGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGACATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGACATATGTGGCAGAGC
*
61997338 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGACATATGTGGCAGAGC
*
61997392 CACCAGATTAGATAAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAGGAC
61997429 GCTTCCTCCA
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
53 5 0.06
54 56 0.67
55 23 0.27
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGACATATGTGGCAGAGC
Found at i:61999057 original size:26 final size:26
Alignment explanation
Indices: 61999021--61999180 Score: 311
Period size: 26 Copynumber: 6.2 Consensus size: 26
61999011 TGAAATTCTC
61999021 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
61999047 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
61999073 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
61999099 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
61999125 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
61999151 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
61999177 ATCA
1 ATCA
61999181 ATTTGTATCA
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 132 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:62019764 original size:46 final size:46
Alignment explanation
Indices: 62019697--62019874 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
62019687 TGTAACCCGC
* *
62019697 CCATAAGTGAACTCGGACTCAAATCAACGAGCTCGGGTGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCACAT
* **
62019743 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTC-ACAT
* *** * ** *
62019789 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCACAT
* *
62019836 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
62019875 CTCAACCATC
Statistics
Matches: 106, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
45 1 0.01
46 71 0.67
47 33 0.31
48 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCACAT
Found at i:62019820 original size:93 final size:93
Alignment explanation
Indices: 62019705--62019875 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
62019695 GCCCATAAGT
*** *
62019705 GAACTCGGACTCAAATCAACGAGCTCGGGTGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
62019770 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
62019798 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
*
62019863 CGAGTTCGGATGC
66 CGAGCTCGGATGC
62019876 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:62022298 original size:15 final size:15
Alignment explanation
Indices: 62022259--62022314 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
62022249 CAAGGAAACT
*
62022259 GAATAAAGAAATTCA
1 GAATAAAGAAATCCA
*
62022274 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
62022289 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
62022304 GAATAAAGAAA
1 GAATAAAGAAA
62022315 CCTAAGATAC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
14 1 0.03
15 34 0.94
16 1 0.03
ACGTcount: A:0.61, C:0.09, G:0.16, T:0.14
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:62025380 original size:93 final size:93
Alignment explanation
Indices: 62025268--62025438 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
62025258 GCCCATAAGT
* *
62025268 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62025333 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
62025361 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
62025426 CGAGTTCGGATGC
66 CGAGCTCGGATGC
62025439 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:62025435 original size:46 final size:46
Alignment explanation
Indices: 62025260--62025435 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
62025250 TGTAACCCGC
* * *
62025260 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
62025306 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
62025352 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
62025399 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
62025436 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:62027592 original size:55 final size:54
Alignment explanation
Indices: 62027484--62027738 Score: 265
Period size: 55 Copynumber: 4.8 Consensus size: 54
62027474 ATTAGGGTTT
*
62027484 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGA
* * * *
62027539 AAGGATATCATGTAAGACCATGTCAAGACATGACATTGATAAGTTTCTATAAGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGG-A
* * * * *
62027595 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCACAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGA
* * * *
62027647 AAGGATACCATATAAGACCATGTCGAGACATGGCAATGGTAAGTTTC---A--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGA
* * *
62027696 AAGGATACCATGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
62027739 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 26, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 4 0.02
53 41 0.24
54 13 0.08
55 66 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGA
Found at i:62027690 original size:108 final size:110
Alignment explanation
Indices: 62027491--62027740 Score: 304
Period size: 108 Copynumber: 2.4 Consensus size: 110
62027481 TTTAAGGATA
* * *
62027491 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGAAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCCAAGGAAAGGATACCATATAAGA
*
62027556 CCATGTCAAGACATGACATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
* *
62027601 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCACAAGGTAAGGATACCATATAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-CAAGGAAAGGATACCATATAAG
* * * * *
62027663 ACCATGTCGAGACATGGCAATGGTAAGTTTC-AAAAGG---A--TA
65 ACCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
* *
62027703 CCATGTAAGACCATGACAAGTCATGGCAA-TGGTAAGGT
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGT
62027741 ACCCGTGTAT
Statistics
Matches: 122, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
102 31 0.25
103 2 0.02
104 1 0.01
107 8 0.07
108 46 0.38
109 7 0.06
110 27 0.22
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCCAAGGAAAGGATACCATATAAGA
CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:62032668 original size:43 final size:43
Alignment explanation
Indices: 62032578--62032675 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 43
62032568 TGTGATTATT
* * *
62032578 TGTAAGACCATGTCTAGGACATTGGCATCATTATGAGATTACG
1 TGTAAGACCATATATAGGACATTGGCATCATTATGAGATTACA
* ** ** *
62032621 TGTAAGACCATATATGGGACATTGGCATTGTTATTTGATTTCA
1 TGTAAGACCATATATAGGACATTGGCATCATTATGAGATTACA
62032664 TGTAAGACCATA
1 TGTAAGACCATA
62032676 GCTGGGCTAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATATATAGGACATTGGCATCATTATGAGATTACA
Found at i:62034110 original size:71 final size:71
Alignment explanation
Indices: 62034026--62034189 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
62034016 CGATTTGTCT
62034026 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62034091 CTTTCA
66 CTTTCA
62034097 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62034162 CTTTCA
66 CTTTCA
62034168 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
62034190 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:62034227 original size:71 final size:70
Alignment explanation
Indices: 62034026--62034223 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
62034016 CGATTTGTCT
* * * *
62034026 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62034091 CTTTCA
65 CTTTCA
* * * *
62034097 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62034162 CTTTCA
65 CTTTCA
* *
62034168 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
62034224 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:62041680 original size:71 final size:71
Alignment explanation
Indices: 62041596--62041759 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
62041586 CGATTTGTCT
62041596 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62041661 CTTTCA
66 CTTTCA
62041667 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
62041732 CTTTCA
66 CTTTCA
62041738 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
62041760 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:62041797 original size:71 final size:70
Alignment explanation
Indices: 62041596--62041793 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
62041586 CGATTTGTCT
* * * *
62041596 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62041661 CTTTCA
65 CTTTCA
* * * *
62041667 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
62041732 CTTTCA
65 CTTTCA
* *
62041738 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
62041794 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:62045545 original size:43 final size:43
Alignment explanation
Indices: 62045455--62045551 Score: 113
Period size: 43 Copynumber: 2.3 Consensus size: 43
62045445 TGTGATTTTG
*** * *
62045455 TGTAAGACCATGTCTGGGACATTTGCATCGATATCAGATTACG
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATATCAGATAACA
* **
62045498 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATGTGATAACA
1 TGTAAGACCATGTCTGGGACAGAGGCATCGATATCAGATAACA
*
62045541 TGTAAGGCCAT
1 TGTAAGACCAT
62045552 ATCTAGGATA
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGAGGCATCGATATCAGATAACA
Found at i:62046262 original size:20 final size:20
Alignment explanation
Indices: 62046225--62046263 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
62046215 TGGCTATTTG
*
62046225 ATGATGAAAATTAGTTTGGA
1 ATGATGAAAATTACTTTGGA
*
62046245 ATGATGAAAATTTCTTTGG
1 ATGATGAAAATTACTTTGG
62046264 TCATTTTGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (20 bp):
ATGATGAAAATTACTTTGGA
Found at i:62063571 original size:40 final size:40
Alignment explanation
Indices: 62063526--62063693 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
62063516 CGGAATATAA
62063526 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
62063566 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
62063606 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
62063646 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
62063686 CCGGATAT
1 CCGGATAT
62063694 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:62063676 original size:80 final size:80
Alignment explanation
Indices: 62063542--62063691 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
62063532 ATAACCACGT
* *
62063542 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
62063607 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
62063622 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
62063685 CCCGGAT
64 CCCGGAT
62063692 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:62066656 original size:43 final size:42
Alignment explanation
Indices: 62066594--62066712 Score: 143
Period size: 42 Copynumber: 2.8 Consensus size: 42
62066584 CTAGTACCAT
* * *
62066594 TGCCATA-CACTAGATATGGTCTTACATGTAATCTCGTATTGA
1 TGCCATAGC-CTAGATATGGTCTTACACGTAATCTCCTATCGA
* *
62066636 TGCCAATAGCCTAGTTATGGTCTTACACG-AGTCTCCTATCGA
1 TGCC-ATAGCCTAGATATGGTCTTACACGTAATCTCCTATCGA
* *
62066678 TGCCATATCCCAGATATGGTCTTACACGTAATCTC
1 TGCCATAGCCTAGATATGGTCTTACACGTAATCTC
62066713 AGTAACCCTA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
41 21 0.32
42 23 0.35
43 20 0.31
44 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (42 bp):
TGCCATAGCCTAGATATGGTCTTACACGTAATCTCCTATCGA
Found at i:62066703 original size:41 final size:43
Alignment explanation
Indices: 62066605--62066712 Score: 139
Period size: 41 Copynumber: 2.6 Consensus size: 43
62066595 GCCATACACT
* * * *
62066605 AGATATGGTCTTACATGTAATCTCGTATTGATGCCAATAGCCT
1 AGATATGGTCTTACACGTAATCTCCTATCGATGCCAATAGCCC
* * *
62066648 AGTTATGGTCTTACACG-AGTCTCCTATCGATGCC-ATATCCC
1 AGATATGGTCTTACACGTAATCTCCTATCGATGCCAATAGCCC
62066689 AGATATGGTCTTACACGTAATCTC
1 AGATATGGTCTTACACGTAATCTC
62066713 AGTAACCCTA
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
41 21 0.38
42 19 0.35
43 15 0.27
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (43 bp):
AGATATGGTCTTACACGTAATCTCCTATCGATGCCAATAGCCC
Found at i:62073712 original size:28 final size:28
Alignment explanation
Indices: 62073672--62073731 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
62073662 CTTCGAATGT
* *
62073672 AAAATCGACGAAATGAGTCAATTAGTCC
1 AAAAACGACGAAACGAGTCAATTAGTCC
**
62073700 AAAAACGACGAAACGAGTTGATTAGTCC
1 AAAAACGACGAAACGAGTCAATTAGTCC
62073728 AAAA
1 AAAA
62073732 CCTTATTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.18
Consensus pattern (28 bp):
AAAAACGACGAAACGAGTCAATTAGTCC
Found at i:62083937 original size:27 final size:27
Alignment explanation
Indices: 62083919--62083991 Score: 103
Period size: 28 Copynumber: 2.7 Consensus size: 27
62083909 ATAGTGAGTC
*
62083919 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAGTCAACT
*
62083946 TGCACACTTAGTGCTATAT-GATCAAACT
1 CGCACACTTAGTGCTATATAG-TC-AACT
62083974 CGCACACTTAGTGCTATA
1 CGCACACTTAGTGCTATA
62083992 CAAATTTTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 20 0.49
28 21 0.51
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAGTCAACT
Found at i:62083982 original size:28 final size:27
Alignment explanation
Indices: 62083919--62083991 Score: 119
Period size: 27 Copynumber: 2.7 Consensus size: 27
62083909 ATAGTGAGTC
62083919 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
* *
62083946 TGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
62083974 CGCACACTTAGTGCTATA
1 CGCACACTTAGTGCTATA
62083992 CAAATTTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.50
28 21 0.50
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:62106403 original size:39 final size:39
Alignment explanation
Indices: 62106351--62106478 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
62106341 TATCAGATTG
62106351 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * *
62106390 AAAATATCCGGACATGAGATCCGCAGACTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * *
62106429 AATATATCCGGACTTGAGGTCCGCAGGCTATGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
62106468 AAAATATCCGG
1 AAAATATCCGG
62106479 GTTAAAGACC
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:62111776 original size:29 final size:29
Alignment explanation
Indices: 62111734--62111864 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
62111724 AAAATTGTAC
62111734 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
62111763 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
62111792 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
62111821 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
62111850 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
62111865 GATTCACTAT
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 99 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:62116645 original size:39 final size:39
Alignment explanation
Indices: 62116593--62116718 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
62116583 TATGAGATTG
62116593 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
62116632 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * * *
62116671 AATATATCTGGACTTGAGGTCCGCAGGCTATGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
62116710 AAAATATCC
1 AAAATATCC
62116719 AGGTTAAAGA
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:62116737 original size:78 final size:76
Alignment explanation
Indices: 62116592--62116746 Score: 195
Period size: 78 Copynumber: 2.0 Consensus size: 76
62116582 GTATGAGATT
* * *
62116592 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATAAGACCCACA
*
62116657 GGCTATATGCTA
66 GGCT-TACGCTA
* * * **
62116669 GAAATATATCTGGACTTGAGGTCCGCAGGCTATGTGCTGGAAAAATATCCAGGTTA-AAGACCCA
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCC-GGACATAAGACCCA
62116733 CAGGCTTACGCTA
64 CAGGCTTACGCTA
62116746 G
1 G
62116747 TAATGTATTC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 11 0.16
78 53 0.79
79 3 0.04
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.22
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATAAGACCCACA
GGCTTACGCTA
Found at i:62119639 original size:39 final size:39
Alignment explanation
Indices: 62119595--62119826 Score: 360
Period size: 39 Copynumber: 6.0 Consensus size: 39
62119585 ATTATATTAT
* *
62119595 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
62119634 CAGCACGAAGCCTGCGGGACTTT-GTCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAG-CCCGGATACATTTC
* * * *
62119673 CAGCACGAAGCCTGC-GGACTTTGGTCCAGATTCATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
62119711 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
62119750 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
62119789 CAACACGAAGCCTGTGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
62119827 TCAGTGTCTT
Statistics
Matches: 177, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 33 0.19
39 144 0.81
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:62119723 original size:77 final size:78
Alignment explanation
Indices: 62119595--62119826 Score: 360
Period size: 77 Copynumber: 3.0 Consensus size: 78
62119585 ATTATATTAT
* *
62119595 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT-GT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAG-
62119659 CCCGGATACATTTC
65 CCCGGATACATTTC
* * * *
62119673 CAGCACGAAGCCTGC-GGACTTTGGTCCAGATTCATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
*
62119737 CCGGATATATTTC
66 CCGGATACATTTC
* *
62119750 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAACACGAAGCCTGTGGGACTTTAGC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
62119815 CCGGATACATTT
66 CCGGATACATTT
62119827 TCAGTGTCTT
Statistics
Matches: 138, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
77 69 0.50
78 69 0.50
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (78 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
CCGGATACATTTC
Found at i:62119755 original size:116 final size:117
Alignment explanation
Indices: 62119595--62119811 Score: 366
Period size: 116 Copynumber: 1.9 Consensus size: 117
62119585 ATTATATTAT
62119595 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT-GT
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAG-
*
62119659 CCCGGATACATTTCCAGCACGAAGCCTG-CGGACTTTGGTCCAGATTCATTTC
65 CCCGGATACATTTCCAACACGAAGCCTGTCGGACTTTGGTCCAGATTCATTTC
* * *
62119711 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTCCAGCACGAAGCCTGCGGGACTTTAGC
1 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
*
62119776 CCGGATACATTTCCAACACGAAGCCTGTGGGACTTT
66 CCGGATACATTTCCAACACGAAGCCTGTCGGACTTT
62119812 AGCCCGGATA
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
116 86 0.91
117 8 0.09
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (117 bp):
CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGC
CCGGATACATTTCCAACACGAAGCCTGTCGGACTTTGGTCCAGATTCATTTC
Found at i:62130730 original size:27 final size:27
Alignment explanation
Indices: 62130699--62130790 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
62130689 CCCCAATATT
* *
62130699 GGTAAAATTACCGAAATACCCTTGTAG
1 GGTAAAATGACCGAAATACCCCTGTAG
* *
62130726 TGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGAAATACCCCTGTAG
*
62130753 GGTAAAATGACC-ATAATACCCCTGTAA
1 GGTAAAATGACCGA-AATACCCCTGTAG
*
62130780 GGTAGAATGAC
1 GGTAAAATGAC
62130791 GATTATGACC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTGTAG
Found at i:62131047 original size:22 final size:22
Alignment explanation
Indices: 62131022--62131068 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
62131012 CTGCGATATT
* * *
62131022 TACGGCCTTTAGCTGTCCTGTC
1 TACGGCATTGAGCCGTCCTGTC
62131044 TACGGCATTGAGCCGTCCTGTC
1 TACGGCATTGAGCCGTCCTGTC
62131066 TAC
1 TAC
62131069 TTCGCCGTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.13, C:0.32, G:0.23, T:0.32
Consensus pattern (22 bp):
TACGGCATTGAGCCGTCCTGTC
Found at i:62132101 original size:13 final size:13
Alignment explanation
Indices: 62132083--62132107 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62132073 TTGGATTCAT
62132083 ACCAAAACAATCA
1 ACCAAAACAATCA
62132096 ACCAAAACAATC
1 ACCAAAACAATC
62132108 GTGAAACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.32, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:62134523 original size:47 final size:48
Alignment explanation
Indices: 62134459--62134676 Score: 215
Period size: 47 Copynumber: 4.6 Consensus size: 48
62134449 GGTAAGGTGC
62134459 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTTAA-GG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATCTTAATGG
* * * *
62134506 CAATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGT-A-GT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCT--TAATGG
** * * * *
62134554 CGATG-CATGTCCTTGACAT-GTCTTACACTAGCTCTCGTCTCAATGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTTAATGG
62134600 CGATGCCATGTCCCAGACATGGTCTTACACTGG--CTC-TCTTAATGTGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTTAA--TGG
62134647 TCGATG-CATGTCCCAGACAT-GTCTTACACT
1 -CGATGCCATGTCCCAGACATGGTCTTACACT
62134677 AGCCAATAAT
Statistics
Matches: 143, Mismatches: 18, Indels: 21
0.79 0.10 0.12
Matches are distributed among these distances:
45 6 0.04
46 37 0.26
47 77 0.54
48 22 0.15
49 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTTAATGG
Found at i:62134626 original size:94 final size:94
Alignment explanation
Indices: 62134459--62134679 Score: 277
Period size: 94 Copynumber: 2.3 Consensus size: 94
62134449 GGTAAGGTGC
* * * * *
62134459 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTTAA-GGCAATGCCATGTCCCAG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGACGATGCCATGTCCCAG
*
62134522 ACATGGTCTTACACTGACTATCAT-CTCGTAGT
63 ACATGGTCTTACACTGACTATCATAAT-GTAGT
**
62134554 CGATGCATGTCCTTGACATGTCTTACACTAGCTCTCGTCTCAATGACGATGCCATGTCCCAGACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGACGATGCCATGTCCCAGACA
* * * *
62134619 TGGTCTTACACTGGCTCTCTTAATGTGGT
66 TGGTCTTACACTGACTATCATAATGTAGT
62134648 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
62134680 CAATAATAAC
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
92 1 0.01
93 19 0.17
94 83 0.76
95 6 0.06
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGACGATGCCATGTCCCAGACA
TGGTCTTACACTGACTATCATAATGTAGT
Found at i:62136323 original size:30 final size:30
Alignment explanation
Indices: 62136281--62136338 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
62136271 AATTTAGGAT
62136281 TTATTTTCATTTATCTT-CATTTATCTTTAA
1 TTATTTTCATTTAT-TTGCATTTATCTTTAA
*
62136311 TTATCTTT-ATTTATTTGTATTTATCTTT
1 TTAT-TTTCATTTATTTGCATTTATCTTT
62136339 TAGAAGTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 2 0.08
30 20 0.80
31 3 0.12
ACGTcount: A:0.21, C:0.10, G:0.02, T:0.67
Consensus pattern (30 bp):
TTATTTTCATTTATTTGCATTTATCTTTAA
Found at i:62136338 original size:20 final size:19
Alignment explanation
Indices: 62136279--62136338 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 19
62136269 TAAATTTAGG
*
62136279 ATTTATTTTCATTTATCTTC
1 ATTTATTTT-ATTTATCTTT
*
62136299 ATTTATCTTTAATTATCTTT
1 ATTTAT-TTTATTTATCTTT
62136319 ATTTATTTGTATTTATCTTT
1 ATTTATTT-TATTTATCTTT
62136339 TAGAAGTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.06
20 30 0.86
21 3 0.09
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.67
Consensus pattern (19 bp):
ATTTATTTTATTTATCTTT
Found at i:62139271 original size:42 final size:42
Alignment explanation
Indices: 62139224--62139425 Score: 147
Period size: 42 Copynumber: 4.6 Consensus size: 42
62139214 TGTGGTTTCG
*
62139224 TGTAAGACCATAACTGGGATATGGCCTCGATATGTGATCTCA
1 TGTAAGACCATAACTGGGATATGGCATCGATATGTGATCTCA
* *
62139266 TGTAAGACCATATA-TGGGATATGGCATTGGCATCAAGATGTGATTTCA
1 TGTAAGACCATA-ACTGGGATATGGCA-TCG-AT----ATGTGATCTCA
* ** * * * **
62139314 TGTAAGGCCATATTTGGGACATGACATCGATATGAGA-CATTG
1 TGTAAGACCATAACTGGGATATGGCATCGATATGTGATC-TCA
* * * *
62139356 TGTAAGACCATAGCTGGGCTATTGGCATCGATATATGATCCCA
1 TGTAAGACCATAACTGGGATA-TGGCATCGATATGTGATCTCA
* * *
62139399 TGTAATACCATATCTAGGATATGGCAT
1 TGTAAGACCATAACTGGGATATGGCAT
62139426 TGGCATCTTA
Statistics
Matches: 122, Mismatches: 27, Indels: 22
0.71 0.16 0.13
Matches are distributed among these distances:
42 51 0.42
43 33 0.27
44 3 0.02
46 2 0.02
47 2 0.02
48 31 0.25
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATAACTGGGATATGGCATCGATATGTGATCTCA
Found at i:62145614 original size:15 final size:15
Alignment explanation
Indices: 62145596--62145627 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
62145586 TTTAATTTAG
62145596 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
62145611 AAGATAAATATATAT
1 AAGATAAATATAAAT
62145626 AA
1 AA
62145628 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:62146476 original size:37 final size:37
Alignment explanation
Indices: 62146434--62146552 Score: 118
Period size: 37 Copynumber: 3.1 Consensus size: 37
62146424 AATCTCCCTA
62146434 TGCATTACAACCCATCTCCTCCATCGCCTTCTCCCCG
1 TGCATTACAACCCATCTCCTCCATCGCCTTCTCCCCG
* *
62146471 TGCATTGCGAA-CCATC-CCTTCCATCGCCTT-TGCACCG
1 TGCATTAC-AACCCATCTCC-TCCATCGCCTTCT-CCCCG
* * *
62146508 TTCATCACAACCCATCTCGGCCTCCATCGCCTTCGCCCCG
1 TGCATTACAACCCATCT---CCTCCATCGCCTTCTCCCCG
62146548 TGCAT
1 TGCAT
62146553 CTGCTGCATA
Statistics
Matches: 65, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
36 5 0.08
37 37 0.57
38 2 0.03
40 19 0.29
41 2 0.03
ACGTcount: A:0.16, C:0.45, G:0.13, T:0.26
Consensus pattern (37 bp):
TGCATTACAACCCATCTCCTCCATCGCCTTCTCCCCG
Found at i:62149617 original size:14 final size:13
Alignment explanation
Indices: 62149594--62149623 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
62149584 ATTACTATAA
62149594 TAATTATATGAAG
1 TAATTATATGAAG
62149607 TAATATATATGAAG
1 TAAT-TATATGAAG
62149621 TAA
1 TAA
62149624 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:62152253 original size:46 final size:46
Alignment explanation
Indices: 62152200--62152351 Score: 168
Period size: 46 Copynumber: 3.3 Consensus size: 46
62152190 TATTTGGGCA
62152200 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
62152246 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
62152293 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
62152339 -CCTGAGCTCGTTG
1 TCC-GAACTCGTTG
62152352 TGTAACACCC
Statistics
Matches: 87, Mismatches: 11, Indels: 16
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 43 0.49
47 32 0.37
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:62154150 original size:27 final size:27
Alignment explanation
Indices: 62154120--62154178 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
62154110 TTAACACCCT
62154120 AGGGGCAAAAT-GGTAATTCTACCCTAC
1 AGGGG-AAAATCGGTAATTCTACCCTAC
* ** *
62154147 AGGGGTATTTCGGTAATTTTACCCTAC
1 AGGGGAAAATCGGTAATTCTACCCTAC
62154174 AGGGG
1 AGGGG
62154179 TATTTTAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 2 0.07
27 25 0.93
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (27 bp):
AGGGGAAAATCGGTAATTCTACCCTAC
Found at i:62154179 original size:27 final size:27
Alignment explanation
Indices: 62154131--62154193 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
62154121 GGGGCAAAAT
*
62154131 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
*
62154158 GGTAATTTTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
*
62154185 AGTAATTTT
1 GGTAATTTT
62154194 GCAAACCATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:62154233 original size:27 final size:26
Alignment explanation
Indices: 62154176--62154272 Score: 68
Period size: 27 Copynumber: 3.6 Consensus size: 26
62154166 TACCCTACAG
* * * * *
62154176 GGGTATTTTAGTAATTTTGCAAACCA
1 GGGTAATTTGGTAATTCTGTAAATCA
* *
62154202 TGGGTATTTTGGTAATTCTGTAAATTGA
1 -GGGTAATTTGGTAATTCTGTAAA-TCA
***
62154230 GGGTAAAACGGTAATTCTGTAAATCA
1 GGGTAATTTGGTAATTCTGTAAATCA
*
62154256 GGAGTACTTTGGTAATT
1 GG-GTAATTTGGTAATT
62154273 TTACAAGTCG
Statistics
Matches: 54, Mismatches: 14, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
26 4 0.07
27 49 0.91
28 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.38
Consensus pattern (26 bp):
GGGTAATTTGGTAATTCTGTAAATCA
Found at i:62157881 original size:40 final size:40
Alignment explanation
Indices: 62157819--62157993 Score: 201
Period size: 40 Copynumber: 4.4 Consensus size: 40
62157809 GAGCATTTGA
* *
62157819 ATCATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTG
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG
* * * *
62157859 ATTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG
*
62157899 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TG
* * * * *
62157939 ACCAAATCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTG
1 ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG
* *
62157979 GTTATATCC-GGCTAA
1 ATCATATCCGGGCTAA
62157994 ATTCCGAAGA
Statistics
Matches: 113, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 6 0.05
40 106 0.94
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG
Found at i:62160480 original size:21 final size:21
Alignment explanation
Indices: 62160454--62160501 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
62160444 TCAACTTAGA
*
62160454 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAAGGAG
*
62160475 GCGGAGGCAGTAGCGAAGGAG
1 GCGGAGGCAGCAGCGAAGGAG
62160496 GCGGAG
1 GCGGAG
62160502 CAGAACAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.25, C:0.17, G:0.56, T:0.02
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAAGGAG
Found at i:62160868 original size:43 final size:42
Alignment explanation
Indices: 62160794--62160911 Score: 112
Period size: 43 Copynumber: 2.8 Consensus size: 42
62160784 ACTGGGCAAA
* * * *
62160794 TTAGCGGCGCTTTTATAAAAAGCACCACTAAAGACCAGGACAT
1 TTAGTGGCGCTTTTTTAAAAAGCGCCGCTAAAGACCAGGAC-T
* * * **
62160837 TTAGTGGCGCTTTTTTAAAAAACGCCGCTAAAAGTCCTGTTCT
1 TTAGTGGCGCTTTTTTAAAAAGCGCCGCT-AAAGACCAGGACT
*
62160880 TTAATGGCG-TTTTTTATAAAAGCGCCGCTAAA
1 TTAGTGGCGCTTTTTTA-AAAAGCGCCGCTAAA
62160912 AGTCCTGGTC
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
42 10 0.16
43 44 0.71
44 8 0.13
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (42 bp):
TTAGTGGCGCTTTTTTAAAAAGCGCCGCTAAAGACCAGGACT
Found at i:62160912 original size:43 final size:43
Alignment explanation
Indices: 62160836--62161052 Score: 280
Period size: 43 Copynumber: 5.1 Consensus size: 43
62160826 GACCAGGACA
* * *
62160836 TTTAGTGGCGCTTTTTTA-AAAAACGCCGCTAAAAGTCCTGTTC
1 TTTAGTGGCG-TTTTTTATACAAGCGCCGCTAAAAGTCCTGGTC
* *
62160879 TTTAATGGCGTTTTTTATAAAAGCGCCGCTAAAAGTCCTGGTC
1 TTTAGTGGCGTTTTTTATACAAGCGCCGCTAAAAGTCCTGGTC
* * **
62160922 TTTAGCGGCG-ATTTTATACAAGCGTTGCTAAAAGTCCTGGTC
1 TTTAGTGGCGTTTTTTATACAAGCGCCGCTAAAAGTCCTGGTC
* *
62160964 TTTAGCGGC--ATTTTATACAAGCGCCGCTAAAAGTCCTGGTC
1 TTTAGTGGCGTTTTTTATACAAGCGCCGCTAAAAGTCCTGGTC
* *
62161005 TTTAGTGGCGTTTTTTATACAAGCGCTGCTAAAACTCCTGGTC
1 TTTAGTGGCGTTTTTTATACAAGCGCCGCTAAAAGTCCTGGTC
62161048 TTTAG
1 TTTAG
62161053 CTGCGTTACA
Statistics
Matches: 156, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
41 38 0.24
42 44 0.28
43 74 0.47
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (43 bp):
TTTAGTGGCGTTTTTTATACAAGCGCCGCTAAAAGTCCTGGTC
Found at i:62162010 original size:20 final size:20
Alignment explanation
Indices: 62161985--62162023 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
62161975 AAGCTCCAGT
62161985 GTTAGTACAACCAGAACCGG
1 GTTAGTACAACCAGAACCGG
62162005 GTTAGTACAACCAGAACCG
1 GTTAGTACAACCAGAACCG
62162024 AGTAAAGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.15
Consensus pattern (20 bp):
GTTAGTACAACCAGAACCGG
Found at i:62170852 original size:48 final size:48
Alignment explanation
Indices: 62170771--62170894 Score: 133
Period size: 48 Copynumber: 2.6 Consensus size: 48
62170761 CGATACTATG
* * * * * * *
62170771 TCCCAGACATGGTCTTATACGAAATCACTTATCAATACTGAAGCTATA
1 TCCCAGACATGGTCTTACACGAGATCTCGTATCAACACCGAAGCCATA
* * * *
62170819 TCCCTGATATGGTCTTACACGAGATCTCGTATCAACACCGATGCCATG
1 TCCCAGACATGGTCTTACACGAGATCTCGTATCAACACCGAAGCCATA
62170867 TCCCAGACATGGTCTTACAC-AGGATCTC
1 TCCCAGACATGGTCTTACACGA-GATCTC
62170895 ATCAATCATG
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
47 1 0.02
48 61 0.98
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (48 bp):
TCCCAGACATGGTCTTACACGAGATCTCGTATCAACACCGAAGCCATA
Found at i:62178335 original size:42 final size:42
Alignment explanation
Indices: 62178253--62178361 Score: 130
Period size: 42 Copynumber: 2.6 Consensus size: 42
62178243 GGGTGCTAAA
* * *
62178253 GCCATGTCTCAGACATGGTCTTACATGGAACTACACATCAAT
1 GCCATATCCCAGACATGGTCTTATATGGAACTACACATCAAT
* * *
62178295 GTCATATCCCAGATATGGTCTTATATGGAACCT-CATATCAAT
1 GCCATATCCCAGACATGGTCTTATATGGAA-CTACACATCAAT
* *
62178337 GCCATGTCCTAGACATGGTCTTATA
1 GCCATATCCCAGACATGGTCTTATA
62178362 CGAAATCATT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 54 0.96
43 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
GCCATATCCCAGACATGGTCTTATATGGAACTACACATCAAT
Found at i:62181286 original size:68 final size:70
Alignment explanation
Indices: 62181214--62181411 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
62181204 ACACCCTGTA
* * * *
62181214 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
62181276 ATAAAT
65 ATAAAT
*
62181282 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
62181347 ATAAAT
65 ATAAAT
*
62181353 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
62181412 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:62181325 original size:41 final size:41
Alignment explanation
Indices: 62181280--62181397 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
62181270 TGAAAGATAA
62181280 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
62181321 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
62181351 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
62181392 ATGTAG
1 ATGTAG
62181398 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:62181337 original size:71 final size:71
Alignment explanation
Indices: 62181248--62181411 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
62181238 GAGATGTATC
62181248 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
62181313 AGGACA
66 AGGACA
62181319 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
62181384 AGGACA
66 AGGACA
62181390 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
62181412 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:62186548 original size:18 final size:18
Alignment explanation
Indices: 62186507--62186548 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
62186497 CATCTAAAAA
62186507 ACTTTCAAGAAAAAAAATC
1 ACTTT-AAGAAAAAAAATC
* *
62186526 A-TTTAAGAAAAATAATT
1 ACTTTAAGAAAAAAAATC
62186543 ACTTTA
1 ACTTTA
62186549 CGTTTTCTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 12 0.60
18 7 0.35
19 1 0.05
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.31
Consensus pattern (18 bp):
ACTTTAAGAAAAAAAATC
Found at i:62193872 original size:22 final size:22
Alignment explanation
Indices: 62193836--62193896 Score: 88
Period size: 21 Copynumber: 2.8 Consensus size: 22
62193826 ATAAAACACC
62193836 ATAAAAAGTAGCACCAAAACAGT
1 ATAAAAA-TAGCACCAAAACAGT
*
62193859 ATCAAAATAGCACC-AAACAGT
1 ATAAAAATAGCACCAAAACAGT
*
62193880 ATAAAAATAACACCAAA
1 ATAAAAATAGCACCAAA
62193897 TAGCAGAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 19 0.56
22 9 0.26
23 6 0.18
ACGTcount: A:0.59, C:0.20, G:0.08, T:0.13
Consensus pattern (22 bp):
ATAAAAATAGCACCAAAACAGT
Found at i:62193906 original size:21 final size:21
Alignment explanation
Indices: 62193862--62193907 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
62193852 AAACAGTATC
* * *
62193862 AAAATAGCACCAAACAGTATA
1 AAAATAACACCAAACAGCAGA
*
62193883 AAAATAACACCAAATAGCAGA
1 AAAATAACACCAAACAGCAGA
62193904 AAAA
1 AAAA
62193908 ACATCACCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.63, C:0.17, G:0.09, T:0.11
Consensus pattern (21 bp):
AAAATAACACCAAACAGCAGA
Found at i:62196263 original size:50 final size:50
Alignment explanation
Indices: 62196048--62196263 Score: 229
Period size: 50 Copynumber: 4.3 Consensus size: 50
62196038 GCTAAATGAC
* * * * *
62196048 CTTGAATATTCGGTCACATAGGTATGTACATATGTGATGTTATATTGGAT
1 CTTGTATATTCGGCCACATAGGTATGCACATATGTGATATTATATTTGAT
** * * * *
62196098 CTTGTATATTCGGATATAAAGGTATGCAAAAATGTGATATTATATTTGAAT
1 CTTGTATATTCGGCCACATAGGTATGCACATATGTGATATTATATTTG-AT
* * * *
62196149 -TTGTATATTCAGCCATATAAGTAAGCACATATGTGATATTATATTTGAT
1 CTTGTATATTCGGCCACATAGGTATGCACATATGTGATATTATATTTGAT
* * *
62196198 CTTGCATATTTGGCCACATAGGTATGCATATATGTGATATTATATTTGAT
1 CTTGTATATTCGGCCACATAGGTATGCACATATGTGATATTATATTTGAT
*
62196248 CTCGCT-TATTCGGCCA
1 CTTG-TATATTCGGCCA
62196264 AATGAATGAT
Statistics
Matches: 135, Mismatches: 28, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
49 2 0.01
50 131 0.97
51 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.40
Consensus pattern (50 bp):
CTTGTATATTCGGCCACATAGGTATGCACATATGTGATATTATATTTGAT
Found at i:62197458 original size:25 final size:25
Alignment explanation
Indices: 62197388--62197449 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
62197378 GTAAGGAGGG
62197388 GATAA-GGAAGAAGATTTAGGAGCT
1 GATAAGGGAAGAAGATTTAGGAGCT
*
62197412 GATAAGGGGAGAAGATTTAGGAGCT
1 GATAAGGGAAGAAGATTTAGGAGCT
62197437 GATAAGGGAAGAA
1 GATAAGGGAAGAA
62197450 AATCAAGGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 5 0.14
25 30 0.86
ACGTcount: A:0.42, C:0.03, G:0.37, T:0.18
Consensus pattern (25 bp):
GATAAGGGAAGAAGATTTAGGAGCT
Found at i:62198927 original size:27 final size:26
Alignment explanation
Indices: 62198885--62198995 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
62198875 ACGAAGCGTC
* *
62198885 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
62198912 CTGATGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
62198939 CTGGTGGCTTTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
62198966 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
62198992 CTGG
1 CTGG
62198996 CAGTCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 16 0.22
27 56 0.76
28 2 0.03
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:62198977 original size:54 final size:53
Alignment explanation
Indices: 62198885--62198995 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
62198875 ACGAAGCGTC
*
62198885 CTGGTGGCTATGCCACAATTATCTGATCTGATGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCCACAT-TATCTGTT
* * * *
62198939 CTGGTGGCTTTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCCACATTATCTGTT
62198992 CTGG
1 CTGG
62198996 CAGTCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 12 0.23
54 40 0.77
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTGCCACATTATCTGTT
Found at i:62201332 original size:47 final size:48
Alignment explanation
Indices: 62201278--62201501 Score: 169
Period size: 49 Copynumber: 4.7 Consensus size: 48
62201268 TTACTTGTGT
*
62201278 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGACAATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGATAATGATA
* * * *
62201325 GCCAGTGTAAGACGTGTCTGGGACACGCATCGG-TTAAGAGT--TG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGA-TAATGATA
* * * * * *
62201369 GCTAGTGTAGGACATGTCTAGGACATGCATCAG--TACGTATAGACGACA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACG-ATA-ATGATA
* * * * *
62201417 GCTAGTATAAGACCATGTCTGGGACATGGTATCAGCCT-CGATGATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTACGATAATGATA
*
62201466 GCCAGTGTAAAACCATGTCTGGGACATGGCATCGGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
62201502 AACATATCCC
Statistics
Matches: 139, Mismatches: 26, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
43 4 0.03
44 28 0.20
45 1 0.01
46 4 0.03
47 33 0.24
48 10 0.07
49 48 0.35
50 8 0.06
51 2 0.01
52 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTACGATAATGATA
Done.