Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 205 of 425
Found at i:62604979 original size:47 final size:47
Alignment explanation
Indices: 62604926--62605220 Score: 500
Period size: 47 Copynumber: 6.3 Consensus size: 47
62604916 ACAAGATATG
62604926 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
62604973 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
62605020 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
62605067 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
62605114 TATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
62605161 TATATGTGATAAGGCCAAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
62605208 TAAATGTGATAAG
1 TATATGTGATAAG
62605221 TCCCGAAGGG
Statistics
Matches: 231, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 231 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:62609329 original size:2 final size:2
Alignment explanation
Indices: 62609322--62609349 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
62609312 TTAAAACATA
62609322 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62609350 GGTCATCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62610151 original size:45 final size:45
Alignment explanation
Indices: 62610087--62610208 Score: 156
Period size: 45 Copynumber: 2.7 Consensus size: 45
62610077 GTTGAAATAT
*
62610087 GAGTAAGACCATAGCTGAAAGACGCTATGGAATCACGATTCAAAC
1 GAGTAAGACCATAGCTGAAAGATGCTATGGAATCACGATTCAAAC
* *
62610132 GAGTAAGACCATAGCTGAAAAATGCTAT-GACATCATGATTCAAAC
1 GAGTAAGACCATAGCTGAAAGATGCTATGGA-ATCACGATTCAAAC
* * ** *
62610177 GTGGAAGACCATATTTGAAAGATACTATGGAA
1 GAGTAAGACCATAGCTGAAAGATGCTATGGAA
62610209 ACAAGACGGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
44 2 0.03
45 62 0.94
46 2 0.03
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.21
Consensus pattern (45 bp):
GAGTAAGACCATAGCTGAAAGATGCTATGGAATCACGATTCAAAC
Found at i:62610331 original size:45 final size:44
Alignment explanation
Indices: 62610182--62610342 Score: 135
Period size: 45 Copynumber: 3.6 Consensus size: 44
62610172 CAAACGTGGA
* *
62610182 AGACCATATTTGAAAGATACTATGGAAACAAGACGGAAAATGAAT
1 AGACCATAGTTGAAAGACACTATGGAAACAAGAC-GAAAATGAAT
** ** * * *
62610227 AGGACCATAGTTGAAAGATGCTAT-GATAGTAGGATGGAAAATAAAT
1 A-GACCATAGTTGAAAGACACTATGGA-AACAAGA-CGAAAATGAAT
* * * * * *
62610273 AAAACATAATTGAAAGACACTATGGGAACATGACAAAAATGAAT
1 AGACCATAGTTGAAAGACACTATGGAAACAAGACGAAAATGAAT
62610317 ATGACCATAGTTGAAAGACACTATGG
1 A-GACCATAGTTGAAAGACACTATGG
62610343 CATTATGACG
Statistics
Matches: 89, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
44 9 0.10
45 45 0.51
46 35 0.39
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (44 bp):
AGACCATAGTTGAAAGACACTATGGAAACAAGACGAAAATGAAT
Found at i:62610351 original size:45 final size:45
Alignment explanation
Indices: 62610181--62610379 Score: 130
Period size: 45 Copynumber: 4.4 Consensus size: 45
62610171 TCAAACGTGG
* * * * * *
62610181 AAGACCATATTTGAAAGATACTATGGAAACAAGACGGAAAATGAAT
1 AAGACCATAGTTGAAAGACACTATGGCAACATGAC-AAAAATAAAT
* ** ** ** * **
62610227 AGGACCATAGTTGAAAGATGCTATGATAGTAGGATGGAAAATAAAT
1 AAGACCATAGTTGAAAGACACTATGGCAACATGA-CAAAAATAAAT
* * * *
62610273 AA-AACATAATTGAAAGACACTATGGGAACATGACAAAAATGAAT
1 AAGACCATAGTTGAAAGACACTATGGCAACATGACAAAAATAAAT
* ** **
62610317 ATGACCATAGTTGAAAGACACTATGGCATTATGACGGAAATAAAT
1 AAGACCATAGTTGAAAGACACTATGGCAACATGACAAAAATAAAT
* *
62610362 AAGATCATGGTTGAAAGA
1 AAGACCATAGTTGAAAGA
62610380 TGCTATGAAA
Statistics
Matches: 116, Mismatches: 35, Indels: 5
0.74 0.22 0.03
Matches are distributed among these distances:
44 9 0.08
45 71 0.61
46 36 0.31
ACGTcount: A:0.47, C:0.10, G:0.21, T:0.22
Consensus pattern (45 bp):
AAGACCATAGTTGAAAGACACTATGGCAACATGACAAAAATAAAT
Found at i:62610386 original size:90 final size:91
Alignment explanation
Indices: 62610186--62610386 Score: 226
Period size: 90 Copynumber: 2.2 Consensus size: 91
62610176 CGTGGAAGAC
* * **
62610186 CATATTTGAAAGATACTATGGAAACAAGACGGAAAATGAATAGGACCATAGTTGAAAGATGCTAT
1 CATAATTGAAAGATACTATGGAAACAAGACGAAAAATGAATAGGACCATAGTTGAAAGACACTAT
* *
62610251 GATAGTAGGATGGAAAATAAATAAAA
66 GACAGTAGGACGGAAAATAAATAAAA
* * * *
62610277 CATAATTGAAAGACACTATGGGAACATGAC-AAAAATGAATATGACCATAGTTGAAAGACACTAT
1 CATAATTGAAAGATACTATGGAAACAAGACGAAAAATGAATAGGACCATAGTTGAAAGACACTAT
* * * *
62610341 GGCATTATGACGG-AAATAAATAAGAT
66 GACAGTAGGACGGAAAATAAATAA-AA
** *
62610367 CATGGTTGAAAGATGCTATG
1 CATAATTGAAAGATACTATG
62610387 AAATTCTTTG
Statistics
Matches: 91, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
89 10 0.11
90 55 0.60
91 26 0.29
ACGTcount: A:0.46, C:0.10, G:0.21, T:0.23
Consensus pattern (91 bp):
CATAATTGAAAGATACTATGGAAACAAGACGAAAAATGAATAGGACCATAGTTGAAAGACACTAT
GACAGTAGGACGGAAAATAAATAAAA
Found at i:62610763 original size:21 final size:21
Alignment explanation
Indices: 62610734--62610782 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
62610724 GGGCTCACAT
* * *
62610734 GCCCATGTGACCTTGGGACAC
1 GCCCGTGTGACCCTAGGACAC
62610755 GCCCGTGTGACCCTAGGACAC
1 GCCCGTGTGACCCTAGGACAC
*
62610776 GTCCGTG
1 GCCCGTG
62610783 CTAGAGGCCG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.16, C:0.35, G:0.31, T:0.18
Consensus pattern (21 bp):
GCCCGTGTGACCCTAGGACAC
Found at i:62617524 original size:46 final size:46
Alignment explanation
Indices: 62617297--62617523 Score: 312
Period size: 46 Copynumber: 4.9 Consensus size: 46
62617287 TTTGACATGA
* * * * * *
62617297 TGCCATAGTGTCTTTCAACTATGATCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* *
62617343 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
62617389 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
62617435 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
62617481 TGCCATAGTATCTTTCAACCATGGTCTTACACACTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
62617524 GAAAGCACAC
Statistics
Matches: 166, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 162 0.98
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:62620646 original size:43 final size:43
Alignment explanation
Indices: 62620599--62620700 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
62620589 TCCCGAACGT
* * ** *
62620599 GGTCTTACATGTAATTCTGTTTTGATGCCTTTGTCCCAGACAG
1 GGTCTTACATGTAAATCAGTTACGATGCCTATGTCCCAGACAG
** *
62620642 GGTCTTACA-CAAAATCAGTTACGATGCCTATGTCCCAGACAT
1 GGTCTTACATGTAAATCAGTTACGATGCCTATGTCCCAGACAG
*
62620684 GATCTTACATGTAAATC
1 GGTCTTACATGTAAATC
62620701 TCAAATCGGG
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
42 33 0.70
43 14 0.30
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAGTTACGATGCCTATGTCCCAGACAG
Found at i:62635212 original size:12 final size:12
Alignment explanation
Indices: 62635195--62635226 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
62635185 ACAGCTTGGG
62635195 ACATGGCCTACC
1 ACATGGCCTACC
62635207 ACATGGCCTACC
1 ACATGGCCTACC
62635219 ACATGGCC
1 ACATGGCC
62635227 GTATGCAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.41, G:0.19, T:0.16
Consensus pattern (12 bp):
ACATGGCCTACC
Found at i:62638414 original size:46 final size:45
Alignment explanation
Indices: 62638364--62638539 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
62638354 TGGTTGAGCA
*
62638364 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * *
62638410 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
62638455 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
62638503 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
62638540 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:62638520 original size:93 final size:93
Alignment explanation
Indices: 62638361--62638532 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
62638351 GGATGGTTGA
* * *
62638361 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
62638426 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
62638454 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
62638519 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
62638533 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62645206 original size:40 final size:40
Alignment explanation
Indices: 62645158--62645402 Score: 415
Period size: 40 Copynumber: 6.2 Consensus size: 40
62645148 GGACTAAGAT
62645158 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
62645198 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
62645238 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
62645278 CCGAAGGCATTTGTGCTAGTG-CTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
62645317 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
62645357 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
62645396 CCGAAGG
1 CCGAAGG
62645403 TACTTGGGTT
Statistics
Matches: 197, Mismatches: 6, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
39 54 0.27
40 141 0.72
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:62645344 original size:79 final size:80
Alignment explanation
Indices: 62645158--62645402 Score: 431
Period size: 79 Copynumber: 3.1 Consensus size: 80
62645148 GGACTAAGAT
*
62645158 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCTA
62645223 TATCCGGGCTAAGTC
66 TATCCGGGCTAAGTC
*
62645238 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGCTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCTA
62645302 TATCCGGGCTAAGTC
66 TATCCGGGCTAAGTC
* *
62645317 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCTA
*
62645382 TATCC-GGCTAAATC
66 TATCCGGGCTAAGTC
62645396 CCGAAGG
1 CCGAAGG
62645403 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
79 90 0.57
80 68 0.43
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCTA
TATCCGGGCTAAGTC
Found at i:62645363 original size:119 final size:119
Alignment explanation
Indices: 62645158--62645402 Score: 429
Period size: 119 Copynumber: 2.1 Consensus size: 119
62645148 GGACTAAGAT
*
62645158 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
* *
62645223 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
66 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAATC
*
62645278 CCGAAGGCATTTGTGCTAGTG-CTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
*
62645342 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATC
66 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAATC
62645396 CCGAAGG
1 CCGAAGG
62645403 TACTTGGGTT
Statistics
Matches: 120, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
118 15 0.12
119 84 0.70
120 21 0.17
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (119 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
TATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAATC
Found at i:62652413 original size:40 final size:40
Alignment explanation
Indices: 62652365--62652609 Score: 397
Period size: 40 Copynumber: 6.2 Consensus size: 40
62652355 GGACTAAGAT
62652365 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
62652405 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
62652445 CC-AAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
62652484 CCGAAGGCATTTGTGCTAGTGGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
62652524 TCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
62652564 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
62652603 CCGAAGG
1 CCGAAGG
62652610 TACTTGGGTT
Statistics
Matches: 193, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 54 0.28
40 137 0.71
41 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:62652499 original size:79 final size:79
Alignment explanation
Indices: 62652353--62652609 Score: 399
Period size: 79 Copynumber: 3.2 Consensus size: 79
62652343 CGGATGATAA
* *
62652353 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAG-TCCCAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
62652418 TGCTAGTTACTATAT
65 TGCTAGTTGCTATAT
*
62652433 CCGGGCTAAGTCCCAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
62652498 GCTAGTGGCTATAT
66 GCTAGTTGCTATAT
* *
62652512 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTC-CCAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
62652577 TGCGAGTTGCTATAT
65 TGCTAGTTGCTATAT
*
62652592 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCC-AAGG
62652610 TACTTGGGTT
Statistics
Matches: 163, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
78 1 0.01
79 89 0.55
80 73 0.45
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (79 bp):
CCGGGCTAAGTCCCAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCTAGTTGCTATAT
Found at i:62652598 original size:119 final size:119
Alignment explanation
Indices: 62652365--62652609 Score: 411
Period size: 119 Copynumber: 2.1 Consensus size: 119
62652355 GGACTAAGAT
*
62652365 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
* *
62652430 TATCCGGGCTAAGTCCCAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
66 TATCCGGGCTAAGTCCCAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAATC
* * *
62652484 CCGAAGGCATTTGTGCTAGTGGCTATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGATTA
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
*
62652549 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
66 TATCCGGGCTAAGTCCC-AAGGCATTTGTGCGAGTTACTATATCCGGGCTAAATC
62652603 CCGAAGG
1 CCGAAGG
62652610 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
119 93 0.79
120 25 0.21
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (119 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA
TATCCGGGCTAAGTCCCAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAATC
Found at i:62656478 original size:53 final size:53
Alignment explanation
Indices: 62656393--62656599 Score: 144
Period size: 53 Copynumber: 3.8 Consensus size: 53
62656383 TTTATTTTTA
* ** * *
62656393 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATACCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * *
62656446 AACTCACCATTGCTATACCTTGGCATGGTCTTACATGGGATCTTTGCCTTATC
1 AACTCACCATTGCCATACCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * * ** * *** * *
62656499 ATAGTTTATCAATGCCATGTCTTGACATGCTCTTACATGATTTCCTTGCCTTGTAA
1 A-A-CTCACCATTGCCATACCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
* * * * * *
62656555 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTCACCATTGCCATACCTTGACATGGTCTTACATGGGATCCTT
62656600 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 45 0.38
54 36 0.30
55 37 0.31
56 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATACCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Found at i:62666620 original size:10 final size:10
Alignment explanation
Indices: 62666601--62666641 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
62666591 TTCTCAACTC
62666601 ATCA-ACCAA
1 ATCATACCAA
62666610 ATCATACCAA
1 ATCATACCAA
62666620 ATC-TAACCAAA
1 ATCAT-ACC-AA
62666631 ATCATACCAA
1 ATCATACCAA
62666641 A
1 A
62666642 ACATGTTCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
9 5 0.18
10 14 0.50
11 8 0.29
12 1 0.04
ACGTcount: A:0.54, C:0.29, G:0.00, T:0.17
Consensus pattern (10 bp):
ATCATACCAA
Found at i:62674860 original size:40 final size:40
Alignment explanation
Indices: 62674811--62674985 Score: 323
Period size: 40 Copynumber: 4.4 Consensus size: 40
62674801 CGGATGTAAC
*
62674811 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
62674851 AACCCGCACGAATGCCTTCGGGACTTAACCCAGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
62674891 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
62674931 AACCCGCATGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
62674971 AACCCGCACGAATGC
1 AACCCGCACGAATGC
62674986 TATGCACATA
Statistics
Matches: 130, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:62682971 original size:40 final size:40
Alignment explanation
Indices: 62682927--62683136 Score: 402
Period size: 40 Copynumber: 5.2 Consensus size: 40
62682917 GGATGTACCA
62682927 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
62682967 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
62683007 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
*
62683047 GCACGAATGCCTTTGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
*
62683087 GCATGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
62683127 GCACGAATGC
1 GCACGAATGC
62683137 TATGCACATA
Statistics
Matches: 166, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 166 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
Found at i:62692746 original size:49 final size:49
Alignment explanation
Indices: 62692557--62692751 Score: 196
Period size: 49 Copynumber: 3.9 Consensus size: 49
62692547 TCTATTGTGA
* * *
62692557 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T-T
* * * ** * * **
62692608 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCATATGGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
62692657 AGGT--CAGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCGCA-TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
62692706 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
62692752 GCTTTGGCTA
Statistics
Matches: 116, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
48 4 0.03
49 72 0.62
50 5 0.04
51 35 0.30
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:62697204 original size:47 final size:47
Alignment explanation
Indices: 62697135--62697304 Score: 313
Period size: 47 Copynumber: 3.6 Consensus size: 47
62697125 AACAGCTCGT
62697135 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62697182 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62697229 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
62697276 AGTGTATATATGTGGTAAAGCCGAATGGC
1 AGTGTATATATGTGATAAGGCCTAATGGC
62697305 TAATGTGAAA
Statistics
Matches: 120, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 120 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:62697311 original size:47 final size:48
Alignment explanation
Indices: 62697135--62697554 Score: 317
Period size: 48 Copynumber: 8.8 Consensus size: 48
62697125 AACAGCTCGT
* * * **
62697135 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
* * * **
62697182 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
* * * **
62697229 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-ATGA-ATGTGAA
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT-ACATGTGAA
**
62697276 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * **
62697325 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * **
62697373 A-TATGTATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * * *
62697421 A-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATACATGTGAA
* * * * * *
62697469 A-TGTGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGAT
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTG-AATAC--ATGTGAA
*
62697519 A-TG-A-ATATGTGGTAAAGCCGAATGGCTAATGAGAAT
1 AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAAT
62697555 GTTGTAACCT
Statistics
Matches: 342, Mismatches: 26, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 128 0.37
48 199 0.58
49 8 0.02
50 7 0.02
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
AGTGTATATATGTGGTAAAGCCGAATGGCTAATGTGAATACATGTGAA
Found at i:62697341 original size:48 final size:48
Alignment explanation
Indices: 62697282--62697549 Score: 428
Period size: 48 Copynumber: 5.6 Consensus size: 48
62697272 TGAAAGTGTA
62697282 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
62697330 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
62697378 TATATGTGGTAAAGCCGAATGGATAATGTGAAATACATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * *
62697426 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATGTG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
* * * * * *
62697474 TATATGTCGTAAAGCCGAATGGCGAATGTGAAATGCGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
*
62697522 AATATGTGGTAAAGCCGAATGGCTAATG
1 TATATGTGGTAAAGCCGAATGGCTAATG
62697550 AGAATGTTGT
Statistics
Matches: 205, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 205 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATG
Found at i:62697648 original size:37 final size:37
Alignment explanation
Indices: 62697598--62697683 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
62697588 GGAAATATAT
*
62697598 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
62697635 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
62697672 TCCGGGTAAGAC
1 TCCGGGTAAGAC
62697684 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:62699876 original size:15 final size:15
Alignment explanation
Indices: 62699856--62699920 Score: 66
Period size: 15 Copynumber: 4.4 Consensus size: 15
62699846 GTATCTTGGG
62699856 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
62699871 TTTCTTTATTCTAGG-
1 TTTCTTTATTCT-GGA
62699886 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
62699901 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
62699915 TTTCTT
1 TTTCTT
62699921 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
14 14 0.33
15 23 0.53
16 6 0.14
ACGTcount: A:0.11, C:0.14, G:0.12, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:62708394 original size:93 final size:93
Alignment explanation
Indices: 62708282--62708453 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
62708272 GCCCATAAGT
* *
62708282 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62708347 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
62708375 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
62708440 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
62708454 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:62708449 original size:46 final size:46
Alignment explanation
Indices: 62708274--62708449 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
62708264 TGTAACTCGC
* *
62708274 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
62708320 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
62708366 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
62708413 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
62708450 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:62712358 original size:23 final size:23
Alignment explanation
Indices: 62712331--62712377 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
62712321 CTTCACACCC
*
62712331 TTTTCTCACAATACTCATAGCTT
1 TTTTCTCACAATACTCAGAGCTT
62712354 TTTTCTCACAATACTCAGAGCTT
1 TTTTCTCACAATACTCAGAGCTT
62712377 T
1 T
62712378 CATTGAAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.43
Consensus pattern (23 bp):
TTTTCTCACAATACTCAGAGCTT
Found at i:62715713 original size:40 final size:44
Alignment explanation
Indices: 62715614--62715717 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 44
62715604 GAAGCTATAA
*
62715614 AATATCGCACACATAGTGCCATCATATTAAACCGAAACTATCTC
1 AATATCGCACACTTAGTGCCATCATATTAAACCGAAACTATCTC
*
62715658 AATATCGCACACTTAGTGCCA-CATA-T-AGCC-AAATCTAT-TCC
1 AATATCGCACACTTAGTGCCATCATATTAAACCGAAA-CTATCT-C
62715699 AAT-TCGCACACTTAGTGCC
1 AATATCGCACACTTAGTGCC
62715718 GAACATAGTC
Statistics
Matches: 56, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
40 20 0.36
41 11 0.20
42 1 0.02
43 4 0.07
44 20 0.36
ACGTcount: A:0.35, C:0.29, G:0.11, T:0.26
Consensus pattern (44 bp):
AATATCGCACACTTAGTGCCATCATATTAAACCGAAACTATCTC
Found at i:62716378 original size:20 final size:17
Alignment explanation
Indices: 62716343--62716385 Score: 50
Period size: 20 Copynumber: 2.4 Consensus size: 17
62716333 CATTGTAACG
62716343 ATCACAAAAACGTAAAA
1 ATCACAAAAACGTAAAA
62716360 ATCATCAAAAACCGATAAAA
1 ATCA-CAAAAA-CG-TAAAA
*
62716380 AACACA
1 ATCACA
62716386 TACCTAATTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.18
18 6 0.27
19 4 0.18
20 8 0.36
ACGTcount: A:0.63, C:0.21, G:0.05, T:0.12
Consensus pattern (17 bp):
ATCACAAAAACGTAAAA
Found at i:62719248 original size:2 final size:2
Alignment explanation
Indices: 62719241--62719268 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
62719231 CGAAATTACG
62719241 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
62719269 CACTAACATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:62719666 original size:39 final size:39
Alignment explanation
Indices: 62719640--62719797 Score: 253
Period size: 39 Copynumber: 4.1 Consensus size: 39
62719630 GTCCAGCACG
* *
62719640 TAGCCTGTGGACCTAAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
62719679 TAGCTTGCGGACATGAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
* *
62719718 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCACTTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
*
62719757 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCGTA
1 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
62719796 TA
1 TA
62719798 TATATTCACA
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (39 bp):
TAGCCTGCGGACCTGAAGTCCGGATATAATTCTCGCATA
Found at i:62726545 original size:43 final size:43
Alignment explanation
Indices: 62726461--62726618 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
62726451 TCTGTGACAT
* * * * *
62726461 CGTGTAAGACTATGTCTGGGACGTAGGCCTCGAT-TGAGATTTA
1 CGTGTAAGACCATGTCTGGGACATCGGCATCGATAT-TGATTTA
* *
62726504 CGTATAAGACCATGTCTAGGACATCGGCATCG-TATCTGATTT-
1 CGTGTAAGACCATGTCTGGGACATCGGCATCGATAT-TGATTTA
* * ** *
62726546 CGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACATCGGCATCGATATTGATTTA
* * *
62726589 CATGTAAGACCACGTCTGGGACTTCGGCAT
1 CGTGTAAGACCATGTCTGGGACATCGGCAT
62726619 TGTACTTGAT
Statistics
Matches: 90, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
42 32 0.36
43 58 0.64
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACATCGGCATCGATATTGATTTA
Found at i:62736833 original size:43 final size:44
Alignment explanation
Indices: 62736770--62736917 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 44
62736760 TGTGACATCG
** *
62736770 TGTAAGACTGTGTCTGGGACATAGGCCTCG-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACATAGGCATCGTATTGAGATTTACA
* * *
62736813 TATAAGACCATGTCTAGGACATCGGCATCGTATCT--GATTT-CA
1 TGTAAGACCATGTCTGGGACATAGGCATCGTAT-TGAGATTTACA
* *
62736855 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTACA
1 TGTAAGACCATGTCTGGGACATAGGCATCG-TATTGAGATTTACA
*
62736898 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGTCTGGGAC
62736918 GTCGGCATTG
Statistics
Matches: 86, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
42 30 0.35
43 53 0.62
44 2 0.02
45 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.28
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACATAGGCATCGTATTGAGATTTACA
Found at i:62736875 original size:42 final size:41
Alignment explanation
Indices: 62736770--62736936 Score: 140
Period size: 43 Copynumber: 3.9 Consensus size: 41
62736760 TGTGACATCG
** *
62736770 TGTAAGACTGTGTCTGGGACATAGGCCTCG-ATTGAGATTTACA
1 TGTAAGACCCTGTCTGGGACATAGGCATCGTATT--GATTT-CA
* * * *
62736813 TATAAGACCATGTCTAGGACATCGGCATCGTATCTGATTTCA
1 TGTAAGACCCTGTCTGGGACATAGGCATCGTAT-TGATTTCA
* *
62736855 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCCTGTCTGGGACATAGGCATCG-TATTG-ATTTCA
* * *
62736898 TGTAAGACCAC-GTCTGGGACGTCGGCATTGTACTTGATT
1 TGTAAGACC-CTGTCTGGGACATAGGCATCGTA-TTGATT
62736937 ATGAGCATCT
Statistics
Matches: 102, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
42 34 0.33
43 64 0.63
44 3 0.03
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (41 bp):
TGTAAGACCCTGTCTGGGACATAGGCATCGTATTGATTTCA
Found at i:62736936 original size:85 final size:85
Alignment explanation
Indices: 62736770--62736925 Score: 208
Period size: 85 Copynumber: 1.8 Consensus size: 85
62736760 TGTGACATCG
** * * *
62736770 TGTAAGACTGTGTCTGGGACATAGGCCTCGATTGAGATTTACATATAAGACCATGTCTAGGACAT
1 TGTAAGACCCTGTCTGGGACAGAGGCATCGATTGAGATTTACATATAAGACCACGTCTAGGACAT
62736835 CGGCATCGTATCTGATTTCA
66 CGGCATCGTATCTGATTTCA
* *
62736855 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCTGGGAC
1 TGTAAGACCCTGTCTGGGACAGAGGCATCG--ATTGAGATTTACATATAAGACCACGTCTAGGAC
*
62736918 GTCGGCAT
64 ATCGGCAT
62736926 TGTACTTGAT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 55 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (85 bp):
TGTAAGACCCTGTCTGGGACAGAGGCATCGATTGAGATTTACATATAAGACCACGTCTAGGACAT
CGGCATCGTATCTGATTTCA
Found at i:62740453 original size:43 final size:43
Alignment explanation
Indices: 62740405--62740502 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
62740395 CATTAGGATT
*
62740405 ATCGTTATGTGATTACGTGCAAGACCAT-GTCTAGGAC-ATTGGC
1 ATCGTTATGTGATTACATGCAAGACCATAG-CT-GGACTATTGGC
* * * *
62740448 ATCGTTATTTGATTTCATGTAAGACCATAGCTGGGCTATTGGC
1 ATCGTTATGTGATTACATGCAAGACCATAGCTGGACTATTGGC
*
62740491 ATCGATATGTGA
1 ATCGTTATGTGA
62740503 AACATGTAAG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 3 0.07
43 42 0.91
44 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
ATCGTTATGTGATTACATGCAAGACCATAGCTGGACTATTGGC
Found at i:62741394 original size:43 final size:43
Alignment explanation
Indices: 62741296--62741396 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 43
62741286 ACAGGCAGAG
* * *
62741296 ACACGGGCATGTGTCTCAACCGTGTGCAACACATGGTCATGCT
1 ACACGGGCGTGTGTCTCAACCGTGTCCAACACACGGTCATGCT
** *
62741339 ACACGGGCGTGTGTCTCAGTCGTGTCCGACACACGGTCATGCT
1 ACACGGGCGTGTGTCTCAACCGTGTCCAACACACGGTCATGCT
62741382 ACAC-GGCTGTGTGTC
1 ACACGGGC-GTGTGTC
62741397 CCCTGGTGTT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
42 3 0.06
43 48 0.94
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.24
Consensus pattern (43 bp):
ACACGGGCGTGTGTCTCAACCGTGTCCAACACACGGTCATGCT
Found at i:62742925 original size:13 final size:13
Alignment explanation
Indices: 62742909--62742941 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
62742899 TTTGATTAAA
*
62742909 TTAGTTAATTAGT
1 TTAGATAATTAGT
62742922 TTAGATAATTAGT
1 TTAGATAATTAGT
62742935 TTA-ATAA
1 TTAGATAA
62742942 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:62746339 original size:21 final size:21
Alignment explanation
Indices: 62746315--62746355 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
62746305 GTTCAGCCGT
*
62746315 GTACAACAATACACGGGCGTG
1 GTACAACAACACACGGGCGTG
* *
62746336 GTACCATAACACACGGGCGT
1 GTACAACAACACACGGGCGT
62746356 AGGAGAACCG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.15
Consensus pattern (21 bp):
GTACAACAACACACGGGCGTG
Found at i:62748227 original size:6 final size:6
Alignment explanation
Indices: 62748216--62748262 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
62748206 CTCTTATCTT
* * * *
62748216 TTTTTA TTTTTA TTTCTA TTTTGA TTTTGA TTTTTA TGTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
62748263 TATTATAAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.15, C:0.02, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:62749471 original size:26 final size:26
Alignment explanation
Indices: 62749435--62749490 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
62749425 GTTCTAGCTA
62749435 TTTGTTTGTGATTCAGTGATTAAGTT
1 TTTGTTTGTGATTCAGTGATTAAGTT
62749461 TTTGTTTGTGATTCAGTGATTAAGTT
1 TTTGTTTGTGATTCAGTGATTAAGTT
62749487 TTTG
1 TTTG
62749491 ATAGTGGGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.18, C:0.04, G:0.23, T:0.55
Consensus pattern (26 bp):
TTTGTTTGTGATTCAGTGATTAAGTT
Found at i:62751860 original size:18 final size:18
Alignment explanation
Indices: 62751818--62751860 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
62751808 CCTTGTTCAG
62751818 TTTT-TCTTTTGGTCATT
1 TTTTCTCTTTTGGTCATT
*
62751835 TTTCCTCTTTTGG-CATTT
1 TTTTCTCTTTTGGTCA-TT
62751853 TTTTCTCT
1 TTTTCTCT
62751861 GGCGGAATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.05, C:0.19, G:0.09, T:0.67
Consensus pattern (18 bp):
TTTTCTCTTTTGGTCATT
Found at i:62759676 original size:28 final size:28
Alignment explanation
Indices: 62759607--62759707 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
62759597 GACAAGATTG
* * * *
62759607 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
62759637 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
62759665 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
62759694 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
62759708 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:62768884 original size:13 final size:13
Alignment explanation
Indices: 62768868--62768893 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62768858 TAGCCTAAAA
62768868 TAATAGCTACCAT
1 TAATAGCTACCAT
62768881 TAATAGCTACCAT
1 TAATAGCTACCAT
62768894 GTCAGTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (13 bp):
TAATAGCTACCAT
Found at i:62775277 original size:20 final size:21
Alignment explanation
Indices: 62775238--62775277 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
62775228 CTCCAGCAAA
*
62775238 CTTGAGATCCAAATTAAGCTG
1 CTTGAGAGCCAAATTAAGCTG
*
62775259 CTTGAGAGCCTAA-TAAGCT
1 CTTGAGAGCCAAATTAAGCT
62775278 TTATGTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (21 bp):
CTTGAGAGCCAAATTAAGCTG
Found at i:62778878 original size:40 final size:39
Alignment explanation
Indices: 62778714--62778896 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
62778704 GAAATTGATG
* *
62778714 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * * *
62778753 ATAACCGGGTTAAGACCAGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
62778793 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
62778833 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
62778872 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
62778897 CTTGGTGCGG
Statistics
Matches: 111, Mismatches: 27, Indels: 11
0.74 0.18 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 15 0.14
40 90 0.81
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:62786665 original size:40 final size:39
Alignment explanation
Indices: 62786500--62786683 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
62786490 AAATTGAATG
* * *
62786500 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
62786540 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
62786580 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
62786620 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
62786659 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
62786684 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:62786708 original size:80 final size:81
Alignment explanation
Indices: 62786540--62786728 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
62786530 GCTGGAAATT
* * * *
62786540 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
62786605 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
62786621 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
62786684 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
62786700 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
62786729 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:62790565 original size:93 final size:93
Alignment explanation
Indices: 62790459--62790629 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
62790449 CGCCCATAAG
* *
62790459 CGAACTCGAACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAGCTCA
1 CGAACTCGAACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
62790524 ATGAGCTCGGATGTATAGTTACATCTCA
66 ACGAGCTCGGATGTATAGTTACATCTCA
* * *
62790552 CGAACTCGGACTCAACTCAACGAGTTCAGACGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
62790617 ACGAGTTCGGATG
66 ACGAGCTCGGATG
62790630 CCCAAATATC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCAGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGTATAGTTACATCTCA
Found at i:62790624 original size:46 final size:46
Alignment explanation
Indices: 62790452--62790621 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
62790442 TGTAACCCGC
* * *
62790452 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTTGCAT
* * * * * *
62790498 CCATAAGTGAACTCGGACTCAGCTCAATGAGCTCGGATGTATAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACG--T--TTGCAT
* *
62790548 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTTGCAT
*
62790591 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGCGAACTCGGACTCAACTCAACGAG
62790622 TTCGGATGCC
Statistics
Matches: 98, Mismatches: 19, Indels: 14
0.75 0.15 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 3 0.03
46 55 0.56
47 26 0.27
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGACGTTTGCAT
Found at i:62793380 original size:30 final size:29
Alignment explanation
Indices: 62793338--62793394 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
62793328 AAAGATAATA
62793338 AGAAAACCGAATAAAGAAATCCAAGATTG
1 AGAAAACCGAATAAAGAAATCCAAGATTG
* *
62793367 AGAAACCCAGAATAAAGAAATCTAAGAT
1 AGAAAACC-GAATAAAGAAATCCAAGAT
62793395 ACGATACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 7 0.28
30 18 0.72
ACGTcount: A:0.56, C:0.14, G:0.16, T:0.14
Consensus pattern (29 bp):
AGAAAACCGAATAAAGAAATCCAAGATTG
Found at i:62795806 original size:40 final size:40
Alignment explanation
Indices: 62795753--62795841 Score: 153
Period size: 40 Copynumber: 2.2 Consensus size: 40
62795743 CATAGATTAG
*
62795753 TTAG-CACATAAAGCATATGTGTTATCAAATATAATCTCGA
1 TTAGCCAC-TAAAGCATACGTGTTATCAAATATAATCTCGA
62795793 TTAGCCACTAAAGCATACGTGTTATCAAATATAATCTCGA
1 TTAGCCACTAAAGCATACGTGTTATCAAATATAATCTCGA
62795833 TTAGCCACT
1 TTAGCCACT
62795842 CCAATAGCTA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 44 0.94
41 3 0.06
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.31
Consensus pattern (40 bp):
TTAGCCACTAAAGCATACGTGTTATCAAATATAATCTCGA
Found at i:62796514 original size:92 final size:92
Alignment explanation
Indices: 62796408--62796577 Score: 261
Period size: 92 Copynumber: 1.8 Consensus size: 92
62796398 ACCCATAAGT
*
62796408 GAACTCGAACTCAACTCAACAAGCTCAGG-CGTTCGCATCCATAAGTGAACTCAGACTCGACTCA
1 GAACTCGAACTCAACTCAACAAGCTC-GGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
62796472 ATGAGCTCGGATGCTAGTTACATCTCAC
65 ACGAGCTCGGATGCTAGTTACATCTCAC
* * * *
62796500 GAACTCGGACTCAACTCAACGAGTTCGGACGTTCTCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGAACTCAACTCAACAAGCTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
62796565 CGAGTTCGGATGC
66 CGAGCTCGGATGC
62796578 CCAAATATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
91 2 0.03
92 68 0.97
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (92 bp):
GAACTCGAACTCAACTCAACAAGCTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCTAGTTACATCTCAC
Found at i:62796569 original size:46 final size:46
Alignment explanation
Indices: 62796400--62796574 Score: 164
Period size: 46 Copynumber: 3.8 Consensus size: 46
62796390 TGTAACCCAC
* *
62796400 CCATAAGTGAACTC-GAACTCAACTCAACAAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCAG-ACTCAACTCAACGAGCTC-GGACGTTCACAT
* *
62796446 CCATAAGTGAACTCAGACTCGACTCAATGAGCTCGGATGCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA--C--GTTCACAT
* * * * *
62796495 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCTCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACGTTCACAT
*
62796538 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGA
62796575 TGCCCAAATA
Statistics
Matches: 105, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 4 0.04
46 82 0.78
47 3 0.03
48 2 0.02
49 3 0.03
50 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGACGTTCACAT
Found at i:62798402 original size:55 final size:56
Alignment explanation
Indices: 62798237--62798452 Score: 353
Period size: 56 Copynumber: 3.9 Consensus size: 56
62798227 ACATGTAATT
* * *
62798237 ACATATCAATGCCAACGTACTAGACGTGGTCTTACTCGCACACATATATCGGAATC
1 ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGGAATC
*
62798293 ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATTGGAATC
1 ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGGAATC
*
62798349 ACATATCGATGCCAACGTATTAAA-GTGGTCTTACTTGCACACATATATCGGAATC
1 ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGGAATC
* * *
62798404 ACATATTGATGCCAACGTATTAAACGTGGTCTTAATCCCACACATATAT
1 ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATAT
62798453 TGATGCCATG
Statistics
Matches: 149, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
55 52 0.35
56 97 0.65
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (56 bp):
ACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGGAATC
Found at i:62798432 original size:111 final size:112
Alignment explanation
Indices: 62798237--62798454 Score: 366
Period size: 111 Copynumber: 2.0 Consensus size: 112
62798227 ACATGTAATT
*
62798237 ACATATCAATGCCAACGTACTAGACGTGGTCTTACTCGCACACATATATCGGAATCACATATCGA
1 ACATATCAATGCCAACGTACTAGAAGTGGTCTTACTCGCACACATATATCGGAATCACATATCGA
* *
62798302 TGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATTGGAATC
66 TGCCAACGTATTAAACGTGGTCTTAATCCCACACATATATTGGAATC
* * * *
62798349 ACATATCGATGCCAACGTATTA-AAGTGGTCTTACTTGCACACATATATCGGAATCACATATTGA
1 ACATATCAATGCCAACGTACTAGAAGTGGTCTTACTCGCACACATATATCGGAATCACATATCGA
62798413 TGCCAACGTATTAAACGTGGTCTTAATCCCACACATATATTG
66 TGCCAACGTATTAAACGTGGTCTTAATCCCACACATATATTG
62798455 ATGCCATGGT
Statistics
Matches: 99, Mismatches: 7, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
111 79 0.80
112 20 0.20
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (112 bp):
ACATATCAATGCCAACGTACTAGAAGTGGTCTTACTCGCACACATATATCGGAATCACATATCGA
TGCCAACGTATTAAACGTGGTCTTAATCCCACACATATATTGGAATC
Found at i:62811506 original size:26 final size:26
Alignment explanation
Indices: 62811470--62811523 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
62811460 AGGTGTTGAA
62811470 AGTATGTAAGTTGGTATGATAATAAT
1 AGTATGTAAGTTGGTATGATAATAAT
62811496 AGTATGTAAGTTGGTATGATAATAAT
1 AGTATGTAAGTTGGTATGATAATAAT
62811522 AG
1 AG
62811524 AGCAATAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (26 bp):
AGTATGTAAGTTGGTATGATAATAAT
Found at i:62815244 original size:18 final size:18
Alignment explanation
Indices: 62815221--62815269 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
62815211 CAGTAATATC
*
62815221 CATTTATTCAGTATCAGT
1 CATTTATTCAGTAACAGT
* **
62815239 CCTTTATTTTGTAACAGT
1 CATTTATTCAGTAACAGT
*
62815257 CAATTATTCAGTA
1 CATTTATTCAGTA
62815270 GCAGACAGTC
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (18 bp):
CATTTATTCAGTAACAGT
Found at i:62816622 original size:27 final size:27
Alignment explanation
Indices: 62816588--62816654 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
62816578 AAATGACAGC
62816588 TTTGCCCTTATGTGGTAAGATGACTAT
1 TTTGCCCTTATGTGGTAAGATGACTAT
* * *
62816615 TTTTCCCTTATATGGTAAGATGACTGT
1 TTTGCCCTTATGTGGTAAGATGACTAT
62816642 TTTGCCC-TATGTG
1 TTTGCCCTTATGTG
62816655 ATGTATATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
26 5 0.14
27 30 0.86
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.43
Consensus pattern (27 bp):
TTTGCCCTTATGTGGTAAGATGACTAT
Found at i:62826010 original size:38 final size:38
Alignment explanation
Indices: 62825952--62826059 Score: 182
Period size: 38 Copynumber: 2.8 Consensus size: 38
62825942 TCAATCATGC
62825952 ACTGGGCC-ATAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGA-AG-CCTTTTCATATTTCATATTTCATAAT
*
62825991 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
62826029 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
62826060 ACTGGGCCGA
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
38 55 0.83
39 10 0.15
40 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAT
Found at i:62826017 original size:31 final size:31
Alignment explanation
Indices: 62825975--62826076 Score: 132
Period size: 31 Copynumber: 3.1 Consensus size: 31
62825965 CCTTTTCATA
62825975 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
62826012 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
62826044 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
62826075 TT
1 TT
62826077 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
31 32 0.51
32 1 0.02
33 1 0.02
37 1 0.02
38 28 0.44
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:62826312 original size:23 final size:24
Alignment explanation
Indices: 62826267--62826384 Score: 152
Period size: 23 Copynumber: 5.0 Consensus size: 24
62826257 GCTTTATCAT
*
62826267 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
62826292 ATAACTGGGCCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
62826315 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
**
62826338 ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTA
62826362 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62826385 TCACTTCCTC
Statistics
Matches: 83, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
23 38 0.46
24 37 0.45
25 8 0.10
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:62826355 original size:47 final size:47
Alignment explanation
Indices: 62826267--62826384 Score: 168
Period size: 47 Copynumber: 2.5 Consensus size: 47
62826257 GCTTTATCAT
*
62826267 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGCCAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGCCAAAGCCCTTTCA
* *
62826315 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTCG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGCCA-AAGCCCTTTCA
62826362 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62826385 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
46 11 0.17
47 42 0.65
48 12 0.18
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGCCAAAGCCCTTTCA
Found at i:62826460 original size:20 final size:20
Alignment explanation
Indices: 62826435--62826474 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
62826425 TATGATTACC
62826435 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
62826455 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
62826475 CCATATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:62828220 original size:11 final size:11
Alignment explanation
Indices: 62828204--62828229 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
62828194 CAAATTTTAG
62828204 AAATTTACTTA
1 AAATTTACTTA
62828215 AAATTTACTTA
1 AAATTTACTTA
62828226 AAAT
1 AAAT
62828230 ATCAAGAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (11 bp):
AAATTTACTTA
Found at i:62834107 original size:31 final size:31
Alignment explanation
Indices: 62834065--62834163 Score: 144
Period size: 31 Copynumber: 3.1 Consensus size: 31
62834055 CCTTTTCATA
62834065 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
62834096 TTTCATGTTTCATATTTCATACTGGGCCGAAGCCT
1 TTTCATATTTCATA----ATACTGGGCCGAAGCCT
*
62834131 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
62834162 TT
1 TT
62834164 ACTGTAAACG
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
31 31 0.51
35 30 0.49
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:62834125 original size:35 final size:35
Alignment explanation
Indices: 62834042--62834163 Score: 162
Period size: 35 Copynumber: 3.5 Consensus size: 35
62834032 TCAATCATGC
*
62834042 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTTC---AT
*
62834081 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCAT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCAT
62834116 ACTGGGCCGAAGCCTTTTCATATTTCATA--T--T
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCAT
62834147 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
62834164 ACTGTAAACG
Statistics
Matches: 80, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
31 18 0.22
33 1 0.01
35 30 0.38
38 20 0.25
39 11 0.14
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCAT
Found at i:62834419 original size:24 final size:24
Alignment explanation
Indices: 62834355--62834472 Score: 170
Period size: 23 Copynumber: 5.0 Consensus size: 24
62834345 GCTTTATCAT
*
62834355 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
62834380 ATAACTGGGGCA-AAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
62834403 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
62834426 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
62834450 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62834473 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 3, Indels: 7
0.90 0.03 0.07
Matches are distributed among these distances:
23 40 0.46
24 39 0.45
25 8 0.09
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:62834444 original size:47 final size:47
Alignment explanation
Indices: 62834355--62834472 Score: 168
Period size: 47 Copynumber: 2.5 Consensus size: 47
62834345 GCTTTATCAT
*
62834355 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAGCCCTTTCA
**
62834403 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCA-AAGCCCTTTCA
62834450 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
62834473 TCACTTCCTC
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
46 12 0.18
47 41 0.63
48 12 0.18
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAGCCCTTTCA
Found at i:62834548 original size:20 final size:20
Alignment explanation
Indices: 62834523--62834582 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
62834513 TATGATTACC
62834523 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
62834543 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
62834563 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
62834583 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:62834553 original size:11 final size:11
Alignment explanation
Indices: 62834523--62834577 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
62834513 TATGATTACC
62834523 TCATGTGCATA
1 TCATGTGCATA
*
62834534 TCA--TACATA
1 TCATGTGCATA
62834543 TCATGTGCATA
1 TCATGTGCATA
* *
62834554 TCA--TACATT
1 TCATGTGCATA
62834563 TCATGTGCATA
1 TCATGTGCATA
62834574 TCAT
1 TCAT
62834578 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:62834657 original size:25 final size:25
Alignment explanation
Indices: 62834625--62834672 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62834615 ATACATAAAC
* * *
62834625 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
62834650 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
62834673 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:62836583 original size:28 final size:28
Alignment explanation
Indices: 62836522--62836619 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
62836512 TCACAAATTG
** * *
62836522 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
62836551 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
62836579 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
62836607 GCACTAAGTGTGC
1 GCACTAAGTGTGC
62836620 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:62844256 original size:28 final size:28
Alignment explanation
Indices: 62844195--62844292 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
62844185 TCACAAATTG
** * *
62844195 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
62844224 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
62844252 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
62844280 GCACTAAGTGTGC
1 GCACTAAGTGTGC
62844293 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:62851932 original size:28 final size:28
Alignment explanation
Indices: 62851871--62851968 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
62851861 TCACAAATTG
** * *
62851871 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
62851900 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
62851928 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
62851956 GCACTAAGTGTGC
1 GCACTAAGTGTGC
62851969 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:62855202 original size:29 final size:29
Alignment explanation
Indices: 62855169--62855357 Score: 229
Period size: 29 Copynumber: 6.5 Consensus size: 29
62855159 GTGACGAGAT
62855169 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
62855198 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
62855227 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
62855256 TGGTACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
62855285 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
62855314 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
62855343 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
62855358 GAAATCGAGT
Statistics
Matches: 138, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
28 2 0.01
29 135 0.98
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:62865873 original size:27 final size:27
Alignment explanation
Indices: 62865853--62866139 Score: 323
Period size: 27 Copynumber: 10.6 Consensus size: 27
62865843 AGGGTATTTT
*
62865853 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
62865880 AGTAATTCTGTAAATCTAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
62865907 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
62865934 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
62865961 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* *
62865988 -GATAATTCTATAAATCGAGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
62866015 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
62866042 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
62866069 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
62866096 AATAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
62866123 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
62866140 GGAGTACTTT
Statistics
Matches: 222, Mismatches: 28, Indels: 20
0.82 0.10 0.07
Matches are distributed among these distances:
26 4 0.02
27 213 0.96
28 5 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:62866139 original size:81 final size:81
Alignment explanation
Indices: 62865855--62866139 Score: 378
Period size: 81 Copynumber: 3.5 Consensus size: 81
62865845 GGTATTTTAG
* * * *
62865855 TAATTTTGTAAA-TCGAGGGTAAAACAGTAATTCTGTAAATCTAGGGTAAAACAGTAATTCTATA
1 TAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
*
62865919 AATCGAGGGTAAAACGA
65 AATCGAGGGTAAAACAA
* * * * * *
62865936 TAATTATGTAAA-TCGGGGGTAAAATGGTAATTATGTAAAT-TAGGGGTAAAACGATAATTCTAT
1 TAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTAT
* *
62865999 AAATCGAGGGTAAAATAG
64 AAATCGAGGGTAAAACAA
* *
62866017 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAA
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAA
62866082 ATCGAGGGTAAAACAA
66 ATCGAGGGTAAAACAA
*
62866098 TAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCG
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCG
62866140 GGAGTACTTT
Statistics
Matches: 180, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
80 2 0.01
81 176 0.98
82 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (81 bp):
TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAA
ATCGAGGGTAAAACAA
Found at i:62869779 original size:27 final size:27
Alignment explanation
Indices: 62869759--62870045 Score: 323
Period size: 27 Copynumber: 10.6 Consensus size: 27
62869749 AGGGTATTTT
*
62869759 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
62869786 AGTAATTCTGTAAATCTAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
62869813 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
62869840 -GATAATTATGTAAATCGGGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
62869867 GGTAATTATGTAAAT-TAGGGATAAAAC
1 AGTAATTCTGTAAATCGAGGG-TAAAAC
* *
62869894 -GATAATTCTATAAATCGAGGGTAAAAT
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
62869921 AGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
62869948 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * **
62869975 GGTAATTTTACAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
62870002 AATAATTCTATAAA-CTGAGGGTAAAAC
1 AGTAATTCTGTAAATC-GAGGGTAAAAC
*
62870029 GGTAATTCTGTAAATCG
1 AGTAATTCTGTAAATCG
62870046 GGAGTACTTT
Statistics
Matches: 222, Mismatches: 28, Indels: 20
0.82 0.10 0.07
Matches are distributed among these distances:
26 7 0.03
27 207 0.93
28 8 0.04
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:62870045 original size:81 final size:81
Alignment explanation
Indices: 62869761--62870045 Score: 378
Period size: 81 Copynumber: 3.5 Consensus size: 81
62869751 GGTATTTTAG
* * * *
62869761 TAATTTTGTAAA-TCGAGGGTAAAACAGTAATTCTGTAAATCTAGGGTAAAACAGTAATTCTATA
1 TAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATA
*
62869825 AATCGAGGGTAAAACGA
65 AATCGAGGGTAAAACAA
* * * * * *
62869842 TAATTATGTAAA-TCGGGGGTAAAATGGTAATTATGTAAAT-TAGGGATAAAACGATAATTCTAT
1 TAATTCTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAATCGAGGG-TAAAACGGTAATTCTAT
* *
62869905 AAATCGAGGGTAAAATAG
64 AAATCGAGGGTAAAACAA
* *
62869923 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAA
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAA
62869988 ATCGAGGGTAAAACAA
66 ATCGAGGGTAAAACAA
*
62870004 TAATTCTATAAACTGAGGGTAAAACGGTAATTCTGTAAATCG
1 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCG
62870046 GGAGTACTTT
Statistics
Matches: 180, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
80 5 0.03
81 170 0.94
82 5 0.03
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (81 bp):
TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAA
ATCGAGGGTAAAACAA
Found at i:62873093 original size:84 final size:84
Alignment explanation
Indices: 62873000--62873179 Score: 229
Period size: 84 Copynumber: 2.1 Consensus size: 84
62872990 GTTCGCGGTA
* *
62873000 TTTTTTATAAAAGCGCCGCTAAAGAGCAAGACCTTTAGCG-GCACTCTTAAAAAACGCCGCCAAA
1 TTTTTTATAAAAGCGCCGCTAAAGACCAAGA-CTTTAGCGAGCACTCTTAAAAAACACCGCCAAA
* *
62873064 GACCAGGACCTTTAGCGGCG
65 GACCAAGAACTTTAGCGGCG
* ** * * *
62873084 TTTTTTATAAAAGCGCCGCTAAAGACCAGGACTTTAGCGACGCTTTTTTAAAAAACACCGCTATA
1 TTTTTTATAAAAGCGCCGCTAAAGACCAAGACTTTAGCGA-GCACTCTTAAAAAACACCGCCAAA
62873149 GACCAAGAACTTTAGCGGCG
65 GACCAAGAACTTTAGCGGCG
*
62873169 -CTTTTATAAAA
1 TTTTTTATAAAA
62873180 AACGCCACTA
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
83 8 0.10
84 39 0.47
85 36 0.43
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.24
Consensus pattern (84 bp):
TTTTTTATAAAAGCGCCGCTAAAGACCAAGACTTTAGCGAGCACTCTTAAAAAACACCGCCAAAG
ACCAAGAACTTTAGCGGCG
Found at i:62873110 original size:43 final size:43
Alignment explanation
Indices: 62873002--62873319 Score: 258
Period size: 43 Copynumber: 7.5 Consensus size: 43
62872992 TCGCGGTATT
* * * *
62873002 TTTTATAAAAGCGCCGCTAAAGAGCAAGACCTTTAGCGGC-AC
1 TTTTATAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGTC
* * *
62873044 TCTTA-AAAAACGCCGCCAAAGACCAGGACCTTTAGCGGCGTT
1 TTTTATAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGTC
* *
62873086 TTTTATAAAAGCGCCGCTAAAGACCAGGA-CTTTAGCGACG-C
1 TTTTATAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGTC
* * * * *
62873127 TTTTTTAAAAAACACCGCTATAGACCAAGAACTTTAGCGGCG-C
1 TTTTAT-AAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGTC
* * * * *
62873170 TTTTATAAAAAACGCCACTATAGACCTGTACTTTTAGCGGCG-C
1 TTTTAT-AAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGTC
* * * * *
62873213 ATTTATAAAAAACGCCGCTATAGACCTGTACTTTTAGCGGCG-C
1 TTTTAT-AAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGTC
* * * *
62873256 TTTTATAAAAAATGCCGCTATAA-ACCTGTACTTTTAGCGGCG-C
1 TTTTAT-AAAAACGCCGCTA-AAGACCAGGACCTTTAGCGGCGTC
*
62873299 TTTTTTAAAAAACGCCGCTAA
1 TTTTAT-AAAAACGCCGCTAA
62873320 TTTGCCCAGT
Statistics
Matches: 238, Mismatches: 33, Indels: 10
0.85 0.12 0.04
Matches are distributed among these distances:
41 35 0.15
42 38 0.16
43 164 0.69
44 1 0.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (43 bp):
TTTTATAAAAACGCCGCTAAAGACCAGGACCTTTAGCGGCGTC
Found at i:62873167 original size:85 final size:86
Alignment explanation
Indices: 62873002--62873318 Score: 324
Period size: 86 Copynumber: 3.7 Consensus size: 86
62872992 TCGCGGTATT
* * * * * * * *
62873002 TTTTAT-AAAAGCGCCGCTAAAGAGCAAGACCTTTAGC-G-GCACTCTTAAAAAACGCCGCCAAA
1 TTTTATAAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCATTTTTAAAAAACGCCGCTATA
* *
62873064 GACCAGGACCTTTAGCGGCG-
66 GACCAAGAACTTTAGCGGCGC
* * * * *
62873084 TTTTTTATAAAAGCGCCGCTAAAGACCAGGAC-TTTAGCGACGCTTTTTTAAAAAACACCGCTAT
1 TTTTATA-AAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCATTTTTAAAAAACGCCGCTAT
62873148 AGACCAAGAACTTTAGCGGCGC
65 AGACCAAGAACTTTAGCGGCGC
* * * * *
62873170 TTTTATAAAAAACGCCACTATAGACCTGTACTTTTAGCGGCGCATTTATAAAAAACGCCGCTATA
1 TTTTATAAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCATTTTTAAAAAACGCCGCTATA
* *
62873235 GACC-TGTACTTTTAGCGGCGC
66 GACCAAGAAC-TTTAGCGGCGC
* * * *
62873256 TTTTATAAAAAATGCCGCTATAA-ACCTGTACTTTTAGCGGCGCTTTTTTAAAAAACGCCGCTA
1 TTTTATAAAAAACGCCGCTA-AAGACCAGGACTTTTAGCGGCGCATTTTTAAAAAACGCCGCTA
62873319 ATTTGCCCAG
Statistics
Matches: 198, Mismatches: 29, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
82 5 0.03
83 6 0.03
84 22 0.11
85 58 0.29
86 106 0.54
87 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (86 bp):
TTTTATAAAAAACGCCGCTAAAGACCAGGACTTTTAGCGGCGCATTTTTAAAAAACGCCGCTATA
GACCAAGAACTTTAGCGGCGC
Found at i:62873238 original size:86 final size:86
Alignment explanation
Indices: 62873046--62873318 Score: 345
Period size: 86 Copynumber: 3.2 Consensus size: 86
62873036 AGCGGCACTC
* * * * * * *
62873046 TTAAAAAACGCCGCCAAAGACCAGGACCTTTAGCGGCG-TTTTTTATAAAAGCGCCGCTAAAGAC
1 TTAAAAAACGCCGCTATAGACCAAGAACTTTAGCGGCGCTTTTATA-AAAAACGCCGCTATAGAC
* * *
62873110 CAGGAC-TTTAGCGACGCTTTT
65 CTGTACTTTTAGCGGCGCTTTT
* *
62873131 TTAAAAAACACCGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCACTATAGACC
1 TTAAAAAACGCCGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACC
*
62873196 TGTACTTTTAGCGGCGCATTT
66 TGTACTTTTAGCGGCGCTTTT
* * * * *
62873217 ATAAAAAACGCCGCTATAGACC-TGTACTTTTAGCGGCGCTTTTATAAAAAATGCCGCTATAAAC
1 TTAAAAAACGCCGCTATAGACCAAGAAC-TTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGAC
62873281 CTGTACTTTTAGCGGCGCTTTT
65 CTGTACTTTTAGCGGCGCTTTT
62873303 TTAAAAAACGCCGCTA
1 TTAAAAAACGCCGCTA
62873319 ATTTGCCCAG
Statistics
Matches: 163, Mismatches: 22, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
85 55 0.34
86 108 0.66
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (86 bp):
TTAAAAAACGCCGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACC
TGTACTTTTAGCGGCGCTTTT
Found at i:62873659 original size:20 final size:21
Alignment explanation
Indices: 62873616--62873662 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
62873606 TCCTGTTCTG
62873616 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
62873637 CTCCGCCTCCCTCGCTG-TGC
1 CTCCGCCTCCCTCGCTGCTGC
62873657 CTCCGC
1 CTCCGC
62873663 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 9 0.35
21 17 0.65
ACGTcount: A:0.00, C:0.57, G:0.19, T:0.23
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:62874242 original size:18 final size:18
Alignment explanation
Indices: 62874210--62874247 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
62874200 TACAATATAG
62874210 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
62874229 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
62874246 TA
1 TA
62874248 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:62879823 original size:21 final size:21
Alignment explanation
Indices: 62879799--62879840 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
62879789 AAATTAATTC
*
62879799 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
62879820 ATACTTAAGTTGAACCAAATA
1 ATACTTAAGTTGAACCAAATA
62879841 TAAAAACTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.12, G:0.10, T:0.31
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:62880978 original size:461 final size:467
Alignment explanation
Indices: 62879440--62881618 Score: 3964
Period size: 471 Copynumber: 4.7 Consensus size: 467
62879430 TATTAATATA
62879440 ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
1 ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
62879505 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
66 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
62879570 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
131 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
62879635 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
196 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
62879700 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
261 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
**
62879765 AAGCAAGCTACATATATGGTAATAAAATTAATTCATACTTAA-GTTGAATCAAATAATACTTAAG
326 AAGCAAGCTACATATATGGTAATAAAATTAATTCATACAAAATGTTGAATCAAATAATACTTAAG
62879829 TTGAACC-AAATAT--AA-A-A-ACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGA
391 TTGAACCAAAATATAAAATATATACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGA
62879888 TAAAAATTAGTT
456 TAAAAATTAGTT
*
62879900 AC-AAATTTTAAAGATATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
1 ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
62879964 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
66 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
62880029 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
131 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
62880094 GATTCATCATACGTGGCGTTGTTACACCTA-GGAGGATCCATTATATCTTGCAGCTCGATATAAG
196 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
62880158 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
261 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
**
62880223 AAGCAAGCTACATATATGGTAATAAAATTAATTCATTGAAAATTGTTGAATCAAATAATACTTAA
326 AAGCAAGCTACATATATGGTAATAAAATTAATTCATACAAAA-TGTTGAATCAAATAATACTTAA
62880288 GTTGAACCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACTA
390 GTTGAACCAAAATAT-AAAA--TA-T-ATACTTATTCATACTTCAAATAATAATTAATAATACTA
62880353 TTTTGATAAAAATTAGTT
450 TTTTGATAAAAATTAGTT
* *
62880371 A-TAACTTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
1 ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
62880435 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
66 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
*
62880500 AAATTAAGATTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
131 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
62880565 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
196 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
62880630 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
261 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
**
62880695 AAGCAAGCTACATATATGGTAATAAAATTAATTCATACTTAA-GTTGAATCAAATAATACTTAAG
326 AAGCAAGCTACATATATGGTAATAAAATTAATTCATACAAAATGTTGAATCAAATAATACTTAAG
*
62880759 TTGAACCAACATAT-AAA-A-A-ACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGA
391 TTGAACCAAAATATAAAATATATACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGA
62880820 TAAAAATTAG-T
456 TAAAAATTAGTT
*
62880831 ACAAAATTTTAAAGATATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
1 ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
62880896 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
66 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
62880961 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
131 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
*
62881026 GATTCATCATACGTGGCGTTGTTACACCTAGGAAGGATCCATTATATCTTGCAGCTCGATATAAG
196 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
62881091 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
261 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
**
62881156 AAGCAAGCTACATATATGGTAATAAAATTAATTCATTGAAAATTGTTGAATCAAATAATACTTAA
326 AAGCAAGCTACATATATGGTAATAAAATTAATTCATACAAAA-TGTTGAATCAAATAATACTTAA
62881221 GTTGAACCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACTA
390 GTTGAACCAAAATAT-AAAA--TA-T-ATACTTATTCATACTTCAAATAATAATTAATAATACTA
62881286 TTTTGAT-AAAATTAGTT
450 TTTTGATAAAAATTAGTT
* *
62881303 A-TAACTTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
1 ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
62881367 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
66 AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
62881432 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
131 AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
62881497 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
196 GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
62881562 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTT-AAATAAGG
261 GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGG
62881619 TTGGAGAGAA
Statistics
Matches: 1664, Mismatches: 27, Indels: 46
0.96 0.02 0.03
Matches are distributed among these distances:
458 137 0.08
459 221 0.13
460 33 0.02
461 414 0.25
462 1 0.00
463 35 0.02
464 2 0.00
465 4 0.00
467 1 0.00
468 4 0.00
470 44 0.03
471 586 0.35
472 182 0.11
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (467 bp):
ACAAAATTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAAT
AGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAAT
AAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAA
GATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAG
GCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGAC
AAGCAAGCTACATATATGGTAATAAAATTAATTCATACAAAATGTTGAATCAAATAATACTTAAG
TTGAACCAAAATATAAAATATATACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGA
TAAAAATTAGTT
Found at i:62881401 original size:932 final size:930
Alignment explanation
Indices: 62879446--62881618 Score: 4280
Period size: 932 Copynumber: 2.3 Consensus size: 930
62879436 TATAACAAAA
62879446 TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTAAT
1 TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTAAT
62879511 TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
66 TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
62879576 AGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCA
131 AGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCA
62879641 TCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACC
196 TCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACC
62879706 CGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAA
261 CGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAA
62879771 GCTACATATATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACC
326 GCTACATATATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACC
62879836 AAATATAAAAACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAAAAATTAGTTA
391 AAATATAAAAACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAAAAATTAGTTA
62879901 CAAATTTTAAAGATATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAG
456 CAAATTTTAAAGATATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAG
62879966 TAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAA
521 TAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAA
62880031 ATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGA
586 ATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGA
62880096 TTCATCATACGTGGCGTTGTTACACCTAGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
651 TTCATCATACGTGGCGTTGTTACACCTAGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
62880161 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAG
716 ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAG
62880226 CAAGCTACATATATGGTAATAAAATTAATTCATTGAAAATTGTTGAATCAAATAATACTTAAGTT
781 CAAGCTACATATATGGTAATAAAATTAATTCATTGAAAATTGTTGAATCAAATAATACTTAAGTT
62880291 GAACCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACTATTT
846 GAACCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACTATTT
62880356 TGATAAAAATTAGTTATAAC
911 TGATAAAAATTAGTTATAAC
62880376 TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTAAT
1 TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTAAT
62880441 TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
66 TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
*
62880506 AGATTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCA
131 AGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCA
62880571 TCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACC
196 TCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACC
62880636 CGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAA
261 CGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAA
62880701 GCTACATATATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACC
326 GCTACATATATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACC
62880766 AACATATAAAAAACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAAAAATTAG-
391 AA-ATAT-AAAAACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAAAAATTAGT
62880830 TACAAAATTTTAAAGATATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAA
454 TAC-AAATTTTAAAGATATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAA
62880895 TAGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAA
518 TAGTAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAA
62880960 TAAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTA
583 TAAATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTA
62881025 AGATTCATCATACGTGGCGTTGTTACACCTAGGAAGGATCCATTATATCTTGCAGCTCGATATAA
648 AGATTCATCATACGTGGCGTTGTTACACCTAGG-AGGATCCATTATATCTTGCAGCTCGATATAA
62881090 GGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGA
712 GGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGA
62881155 CAAGCAAGCTACATATATGGTAATAAAATTAATTCATTGAAAATTGTTGAATCAAATAATACTTA
777 CAAGCAAGCTACATATATGGTAATAAAATTAATTCATTGAAAATTGTTGAATCAAATAATACTTA
62881220 AGTTGAACCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACT
842 AGTTGAACCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACT
62881285 ATTTTGAT-AAAATTAGTTATAAC
907 ATTTTGATAAAAATTAGTTATAAC
62881308 TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTAAT
1 TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTAAT
62881373 TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
66 TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
62881438 AGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCA
131 AGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCA
62881503 TCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACC
196 TCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACC
62881568 CGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTT-AAATAAGG
261 CGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGG
62881619 TTGGAGAGAA
Statistics
Matches: 1237, Mismatches: 2, Indels: 7
0.99 0.00 0.01
Matches are distributed among these distances:
930 391 0.32
931 15 0.01
932 597 0.48
933 234 0.19
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (930 bp):
TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTAAT
TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
AGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCA
TCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACC
CGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAA
GCTACATATATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACC
AAATATAAAAACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAAAAATTAGTTA
CAAATTTTAAAGATATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAG
TAATTTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAA
ATTAAGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGA
TTCATCATACGTGGCGTTGTTACACCTAGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCA
ACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAG
CAAGCTACATATATGGTAATAAAATTAATTCATTGAAAATTGTTGAATCAAATAATACTTAAGTT
GAACCAAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACTATTT
TGATAAAAATTAGTTATAAC
Found at i:62883538 original size:133 final size:133
Alignment explanation
Indices: 62883300--62883551 Score: 479
Period size: 133 Copynumber: 1.9 Consensus size: 133
62883290 GAATTCAACA
62883300 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
62883365 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
62883430 ATT
131 ATT
*
62883433 ATATAAAACGTGAGCAACAAGACAGCATTAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
62883498 TAAGTTGGATAGAAACAT-AAAATCAGACCAAAAGAACATCTAAATAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAA-CAGACCAAAAGAACATCTAAATAACCAAAAT
62883552 GGAATCACCA
Statistics
Matches: 117, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
132 4 0.03
133 113 0.97
ACGTcount: A:0.51, C:0.19, G:0.10, T:0.20
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Found at i:62886956 original size:10 final size:11
Alignment explanation
Indices: 62886935--62886985 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 11
62886925 ACTAAACCAC
62886935 TTTTCATATATA
1 TTTT-ATATATA
62886947 TATTTATATATA
1 T-TTTATATATA
*
62886959 TTTTAAAATAATA
1 TTTT-ATAT-ATA
62886972 TTTTATATATA
1 TTTTATATATA
62886983 TTT
1 TTT
62886986 ATCTTATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 9 0.26
12 15 0.44
13 10 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTATATATA
Found at i:62886994 original size:15 final size:15
Alignment explanation
Indices: 62886974--62887005 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
62886964 AAATAATATT
*
62886974 TTATATATATTTATC
1 TTATATACATTTATC
62886989 TTATATACATTTATC
1 TTATATACATTTATC
62887004 TT
1 TT
62887006 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:62887852 original size:14 final size:14
Alignment explanation
Indices: 62887833--62887872 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
62887823 ATTAAACCTG
* *
62887833 CTTAAACCATATAT
1 CTTAAACCATAAAC
62887847 CTTAAACCATAAAC
1 CTTAAACCATAAAC
*
62887861 CTTAAACTATAA
1 CTTAAACCATAA
62887873 TGATAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (14 bp):
CTTAAACCATAAAC
Found at i:62888171 original size:40 final size:41
Alignment explanation
Indices: 62888034--62888374 Score: 469
Period size: 41 Copynumber: 8.4 Consensus size: 41
62888024 GGTTATGGGA
62888034 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* *
62888075 TTTTTAGCGGCGTTTTACCTAAAGCGCTGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* *
62888116 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCT-A
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* *
62888156 TTTTTAGCGGCGTTTTACCGAAAGCGCGGCTAATGC-CAT-G
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-TGG
* * *
62888196 TTTTTAGCGGCATTTTA-TAGAAAGCGCCACTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCA-AAAGCGCCGCTAATGCTCTGG
* *
62888237 TTTTTAGCGGCGTTTTACCTAAAGCGCTGCTAATGCTCTGG
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* *
62888278 TTTTTAGCGGCGTTTTACCTAAAGCGTCGCTAATGCTCT-G
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* *
62888318 TTTTTAGCGGCGTTTTACCGAAAGTGCCGCTAATGCTCT-G
1 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* *
62888358 TTTCTAGCGGTGTTTTA
1 TTTTTAGCGGCGTTTTA
62888375 GTGAAAAGCG
Statistics
Matches: 269, Mismatches: 26, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.00
40 119 0.44
41 149 0.55
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.35
Consensus pattern (41 bp):
TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
Found at i:62888311 original size:162 final size:162
Alignment explanation
Indices: 62888034--62888367 Score: 546
Period size: 162 Copynumber: 2.1 Consensus size: 162
62888024 GGTTATGGGA
* *
62888034 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCTAAAG
1 TTTTTAGCGGCATTTTACCAAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTACCTAAAG
62888099 CGCTGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTATTTTTAGC
66 CGCTGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTATTTTTAGC
*
62888164 GGCGTTTTACCGAAAGCGCGGCTAATGC-CATG
131 GGCGTTTTACCGAAAGCGCCGCTAATGCTC-TG
*
62888196 TTTTTAGCGGCATTTTA-TAGAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTACCTAAA
1 TTTTTAGCGGCATTTTACCA-AAAGCGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTACCTAAA
* * * *
62888260 GCGCTGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCTAAAGCGTCGCTAATGCTCTGTTTTTAG
65 GCGCTGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTATTTTTAG
*
62888325 CGGCGTTTTACCGAAAGTGCCGCTAATGCTCTG
130 CGGCGTTTTACCGAAAGCGCCGCTAATGCTCTG
*
62888358 TTTCTAGCGG
1 TTTTTAGCGG
62888368 TGTTTTAGTG
Statistics
Matches: 160, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
161 1 0.01
162 158 0.99
163 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.24, T:0.34
Consensus pattern (162 bp):
TTTTTAGCGGCATTTTACCAAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTACCTAAAG
CGCTGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTATTTTTAGC
GGCGTTTTACCGAAAGCGCCGCTAATGCTCTG
Found at i:62888403 original size:81 final size:79
Alignment explanation
Indices: 62888034--62888414 Score: 412
Period size: 81 Copynumber: 4.7 Consensus size: 79
62888024 GGTTATGGGA
* * *
62888034 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTACCTAAAG
1 TTTTTAGCGGCGTTTTA-TAAAAGCGCCGCT-ATGCTCT-ATTTTTAGCGGCGTTTTACCGAAAG
62888099 CGCTGCTAATGCTCTGG
63 CGCTGCTAATGCTCTGG
* *
62888116 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTATTTTTAGCGGCGTTTTACCGAAAGC
1 TTTTTAGCGGCGTTTTA-TAAAAGCGCCGCT-ATGCTCTATTTTTAGCGGCGTTTTACCGAAAGC
*
62888181 GCGGCTAATGC-CAT-G
64 GCTGCTAATGCTC-TGG
* * * *
62888196 TTTTTAGCGGCATTTTATAGAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTACCTAAAG
1 TTTTTAGCGGCGTTTTATA-AAAGCGCCGCT-ATGCTCT-ATTTTTAGCGGCGTTTTACCGAAAG
62888261 CGCTGCTAATGCTCTGG
63 CGCTGCTAATGCTCTGG
* *
62888278 TTTTTAGCGGCGTTTTACCT-AAAGCGTCGCTAATGCTCTGTTTTTAGCGGCGTTTTACCGAAAG
1 TTTTTAGCGGCGTTTTA--TAAAAGCGCCGCT-ATGCTCTATTTTTAGCGGCGTTTTACCGAAAG
* *
62888342 TGCCGCTAATGCTCT-G
63 CGCTGCTAATGCTCTGG
* * * * *
62888358 TTTCTAGCGGTGTTTTAGTGAAAAGCGCCGTCGT-TGTTCTATTTTTACCGGTGTTTT
1 TTTTTAGCGGCGTTTTA-T-AAAAGCGCCG-C-TATGCTCTATTTTTAGCGGCGTTTT
62888415 TTTTAGAACG
Statistics
Matches: 263, Mismatches: 25, Indels: 23
0.85 0.08 0.07
Matches are distributed among these distances:
79 2 0.01
80 51 0.19
81 134 0.51
82 74 0.28
83 1 0.00
84 1 0.00
ACGTcount: A:0.19, C:0.22, G:0.24, T:0.36
Consensus pattern (79 bp):
TTTTTAGCGGCGTTTTATAAAAGCGCCGCTATGCTCTATTTTTAGCGGCGTTTTACCGAAAGCGC
TGCTAATGCTCTGG
Found at i:62890060 original size:50 final size:50
Alignment explanation
Indices: 62889985--62890084 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
62889975 AACACTAAGA
62889985 AAGATTTTAGATAAAACATGACTTCTCTAATAACGCTTCAATGTGACACG
1 AAGATTTTAGATAAAACATGACTTCTCTAATAACGCTTCAATGTGACACG
62890035 AAGATTTTAGATAAAACATGACTTCTCTAATAACGCTTCAATGTGACACG
1 AAGATTTTAGATAAAACATGACTTCTCTAATAACGCTTCAATGTGACACG
62890085 CCAGATTCTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (50 bp):
AAGATTTTAGATAAAACATGACTTCTCTAATAACGCTTCAATGTGACACG
Found at i:62891434 original size:42 final size:42
Alignment explanation
Indices: 62891375--62891466 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
62891365 TGGCCCTTAG
* * * *
62891375 GCCCATTTTAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATATCAATGAATGTATGCAA
62891417 GCCCATTTCAATATCACATGAAATATCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATATCAATGAATGTATGCAA
62891459 GCCCATTT
1 GCCCATTT
62891467 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATATCAATGAATGTATGCAA
Found at i:62891688 original size:26 final size:26
Alignment explanation
Indices: 62891611--62891759 Score: 212
Period size: 26 Copynumber: 5.8 Consensus size: 26
62891601 CCTCTTTAAT
62891611 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
62891636 AACTGGGGCA-AAACCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* *
62891661 AATTGGGGCATAAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
62891687 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
62891713 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
62891739 AACTGGGGCATAAGCCTTTTT
1 AACTGGGGCATAAGCCCTTTT
62891760 GCACTTCTTC
Statistics
Matches: 108, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
25 31 0.29
26 77 0.71
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:62891725 original size:52 final size:52
Alignment explanation
Indices: 62891611--62891759 Score: 248
Period size: 52 Copynumber: 2.9 Consensus size: 52
62891601 CCTCTTTAAT
*
62891611 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAACCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
* *
62891661 AATTGGGGCATAAGCCATTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
*
62891713 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCTTTTT
1 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
62891760 GCACTTCTTC
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 9 0.10
51 24 0.26
52 58 0.64
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (52 bp):
AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:62892591 original size:27 final size:27
Alignment explanation
Indices: 62892561--62892640 Score: 108
Period size: 27 Copynumber: 3.0 Consensus size: 27
62892551 GGGCATATTC
* *
62892561 GTCATTTTACTATACAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
62892588 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
*
62892615 GTCACTTTACCCTACAGGGGCTTTAC
1 GTCACTTTACCATACAGGGGCTTTAC
62892641 AGTCTTTTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:62892661 original size:27 final size:27
Alignment explanation
Indices: 62892573--62892644 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
62892563 CATTTTACTA
*
62892573 TACAGGGG-TATTACGGTCACTTTACCC
1 TACAGGGGCT-TTACAGTCACTTTACCC
*
62892600 TACAGGGGCTTTACGGTCACTTTACCC
1 TACAGGGGCTTTACAGTCACTTTACCC
62892627 TACAGGGGCTTTACAGTC
1 TACAGGGGCTTTACAGTC
62892645 TTTTTACCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 42 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (27 bp):
TACAGGGGCTTTACAGTCACTTTACCC
Found at i:62892726 original size:27 final size:27
Alignment explanation
Indices: 62892696--62892748 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
62892686 GGGTGTTTTG
62892696 GTAAATCTATAAACCAAGGGTATTTCA
1 GTAAATCTATAAACCAAGGGTATTTCA
* * * *
62892723 GTAATTTTGTAAACCAATGGTATTTC
1 GTAAATCTATAAACCAAGGGTATTTC
62892749 CATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (27 bp):
GTAAATCTATAAACCAAGGGTATTTCA
Found at i:62892754 original size:27 final size:27
Alignment explanation
Indices: 62892705--62893042 Score: 114
Period size: 27 Copynumber: 12.5 Consensus size: 27
62892695 GGTAAATCTA
62892705 TAAACCAAGGGTATTTCAGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
*
62892732 TAAACCAATGGTATTTCCA-TAATTTT-
1 TAAACCAAGGGTATTT-CAGTAATTTTG
* * *
62892758 TAGAAAGTCAAGGGTATTTCTGTAACTTTG
1 T--AAA-CCAAGGGTATTTCAGTAATTTTG
** * ** *
62892788 TAAATTAGGGGTATTTTGGTAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* *** * **
62892815 CAAATTGAGGGTATTTCGGTAATTTCA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* ** *
62892842 CAAACC-AGTGGTATTTTGGTAATTTTA
1 TAAACCAAG-GGTATTTCAGTAATTTTG
* * * ** *
62892869 CAAACTAGGGGTATTTTGGTAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* *** *
62892896 CAAATTGAGGGTATTTC-GATAATTTTA
1 TAAACCAAGGGTATTTCAG-TAATTTTG
* * * *
62892923 CAAACCAAGGGTATTTTAGCAATTTTA
1 TAAACCAAGGGTATTTCAGTAATTTTG
* * * *
62892950 CAGA-CTAGGGTATTT-AGGTAATTTTAC
1 TAAACCAAGGGTATTTCA-GTAATTTT-G
* * * **
62892977 T-GATCGAGGGTATTTTGGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
* * *
62893003 TAAACCGATGGTATTTTAGTAATTTTG
1 TAAACCAAGGGTATTTCAGTAATTTTG
*
62893030 TAAATCAAGGGTA
1 TAAACCAAGGGTA
62893043 AAACAGTAAT
Statistics
Matches: 250, Mismatches: 46, Indels: 30
0.77 0.14 0.09
Matches are distributed among these distances:
25 1 0.00
26 24 0.10
27 197 0.79
28 11 0.04
29 16 0.06
30 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
TAAACCAAGGGTATTTCAGTAATTTTG
Found at i:62892855 original size:54 final size:53
Alignment explanation
Indices: 62892796--62893028 Score: 225
Period size: 54 Copynumber: 4.3 Consensus size: 53
62892786 TGTAAATTAG
** * *
62892796 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAACCA
* **
62892849 GTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAATTGA
1 G-GGTATTTTGGTAATTTTACAAACCGA-GGGTATTTTGGTAATTTTACAAA-CCA
* * * * * * *
62892904 GGGTATTTCGATAATTTTACAAACCAAGGGTATTTTAGCAATTTTACAGACTA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAACCA
* ** * **
62892957 GGGTATTTAGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCGA
1 GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAACC-A
* *
62893011 TGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTT
62893029 GTAAATCAAG
Statistics
Matches: 146, Mismatches: 29, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
53 43 0.29
54 99 0.68
55 4 0.03
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACCGAGGGTATTTTGGTAATTTTACAAACCA
Found at i:62892888 original size:81 final size:81
Alignment explanation
Indices: 62892793--62893028 Score: 325
Period size: 81 Copynumber: 2.9 Consensus size: 81
62892783 CTTTGTAAAT
*
62892793 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTT
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTT
*
62892858 TGGTAATTTTACAAAC
66 TAGTAATTTTACAAAC
*
62892874 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTTACAAACCAAG-GGTATT
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACC-AGTGGTATT
* *
62892938 TTAGCAATTTTACAGAC
65 TTAGTAATTTTACAAAC
* ** * * **
62892955 TA-GGGTATTTAGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACC-GATGGTATT
1 TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAG-TGGTATT
62893018 TTAGTAATTTT
65 TTAGTAATTTT
62893029 GTAAATCAAG
Statistics
Matches: 138, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
80 60 0.43
81 75 0.54
82 2 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (81 bp):
TAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAACCAGTGGTATTT
TAGTAATTTTACAAAC
Found at i:62893050 original size:27 final size:27
Alignment explanation
Indices: 62893020--62893096 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
62893010 ATGGTATTTT
* * *
62893020 AGTAATTTTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
62893047 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
62893074 GGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTATAAATCGAGGGTA
62893097 CTTTGGTAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:62893104 original size:27 final size:27
Alignment explanation
Indices: 62892979--62893107 Score: 96
Period size: 27 Copynumber: 4.8 Consensus size: 27
62892969 AATTTTACTG
* * *
62892979 ATCGAGGGTATTTTGGTAATTTTGTAA
1 ATCGAGGGTAATTTGGTAATTCTATAA
* * * * * *
62893006 ACCGATGGTATTTTAGTAATTTTGTAA
1 ATCGAGGGTAATTTGGTAATTCTATAA
* ****
62893033 ATCAAGGGTAAAACAGTAATTCTATAA
1 ATCGAGGGTAATTTGGTAATTCTATAA
***
62893060 ATCGAGGGTAAAACGGTAATTCTATAA
1 ATCGAGGGTAATTTGGTAATTCTATAA
*
62893087 ATCGAGGGTACTTTGGTAATT
1 ATCGAGGGTAATTTGGTAATT
62893108 TTACAATTTG
Statistics
Matches: 84, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 84 1.00
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.36
Consensus pattern (27 bp):
ATCGAGGGTAATTTGGTAATTCTATAA
Found at i:62901945 original size:42 final size:41
Alignment explanation
Indices: 62901884--62901991 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 41
62901874 TAGCCTAGCT
* * *
62901884 ATGGTCTTACACGATTCTCATATA-GATGCCATGTCCCAAAC
1 ATGGTCTTACAAGAATCTCATA-ACGATGCCATATCCCAAAC
* *
62901925 ATGGTCTTACAAGAAATCTCATAACGATGCCATATCCCAGAT
1 ATGGTCTTACAAG-AATCTCATAACGATGCCATATCCCAAAC
* *
62901967 ATGGTCTTACATGTAAACTCATAAC
1 ATGGTCTTACAAG-AATCTCATAAC
62901992 CCTAATGTCA
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 13 0.23
42 44 0.77
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (41 bp):
ATGGTCTTACAAGAATCTCATAACGATGCCATATCCCAAAC
Found at i:62923527 original size:40 final size:39
Alignment explanation
Indices: 62923471--62923610 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 39
62923461 GGATATAGCG
* * *
62923471 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTAT-AA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGATT-TGAA
*
62923509 TAGCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGAA
1 -A-CTCGCACAAATGCCTTCGGGACATAACCCGGATTT-GAA
* ** * *
62923551 ACTCGCACAAATGCCTTC-GGATCTTAGTCTGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGA-CATAACCCGGATTT-GAA
62923591 ACTCGCACAAATGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
62923611 ATCTTAGTCC
Statistics
Matches: 87, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
39 4 0.05
40 77 0.89
41 4 0.05
42 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGATTTGAA
Found at i:62923611 original size:40 final size:40
Alignment explanation
Indices: 62923512--62923663 Score: 175
Period size: 40 Copynumber: 3.8 Consensus size: 40
62923502 GTTATAATAG
**
62923512 CTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTGGAAA
1 CTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTGGAAA
* *
62923552 CTCGCACAAATGCCTTCGGATCTTAGTCTGGATTTGGGAA
1 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTGGAAA
* **
62923592 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCA
1 CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTGGAAA
* *
62923632 CTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 C-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
62923664 CATCATTCGA
Statistics
Matches: 99, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 85 0.86
41 11 0.11
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTGGAAA
Found at i:62927266 original size:40 final size:40
Alignment explanation
Indices: 62927210--62927402 Score: 178
Period size: 40 Copynumber: 4.8 Consensus size: 40
62927200 CGATATAGCG
* * * **
62927210 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGGA
* * *
62927250 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGGA
* *
62927290 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGGA
* * **
62927330 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGGA
* *
62927370 ACTTAGCACAAA-GCCTTCGGGACATAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
62927403 CATCATTCGA
Statistics
Matches: 131, Mismatches: 18, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGGA
Found at i:62927402 original size:80 final size:78
Alignment explanation
Indices: 62927185--62927402 Score: 203
Period size: 80 Copynumber: 2.7 Consensus size: 78
62927175 GAATCACGTA
*
62927185 CCTTCGGATCTTATCC-GATATAGCGACTCGCTCAAAAGCCTTCGGGACATAGCCCGG-TTATAA
1 CCTTCGGATCTTATCCGGATATAGC-ACTCGCAC-AAAGCCTTCGGGACATAGCCCGGATTATAA
* *
62927248 TAGCTCGCACAAATG
64 GAACTCGCACAAATG
* * * * * *
62927263 CCTTCGGGA-CTTAACCCGGATTTGGGAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATT-
1 CCTTC-GGATCTT-ATCCGGATAT-AGCACTCGCACAAA-GCCTTCGGGA-CATAGCCCGGATTA
**
62927325 TGGGAACTCGCACAAATG
61 TAAGAACTCGCACAAATG
*
62927343 CCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACATAGCCCGGA
1 CCTTCGGATCTTA-TCCGGATATAG-CAC-TCGCACAAAGCCTTCGGGACATAGCCCGGA
62927403 CATCATTCGA
Statistics
Matches: 110, Mismatches: 18, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
78 8 0.07
79 17 0.15
80 71 0.65
81 14 0.13
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (78 bp):
CCTTCGGATCTTATCCGGATATAGCACTCGCACAAAGCCTTCGGGACATAGCCCGGATTATAAGA
ACTCGCACAAATG
Found at i:62938355 original size:47 final size:47
Alignment explanation
Indices: 62938292--62938679 Score: 618
Period size: 47 Copynumber: 8.3 Consensus size: 47
62938282 CCCTTCGGGA
* * *
62938292 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
62938339 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62938386 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62938432 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
62938479 CTTGTCACATATATACGCTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGGC
*
62938526 CTTATTACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
62938573 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62938620 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
62938667 CTTATCACATATA
1 CTTATCACATATA
62938680 CATATCTTGT
Statistics
Matches: 314, Mismatches: 24, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
46 44 0.14
47 269 0.86
48 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:62941793 original size:28 final size:28
Alignment explanation
Indices: 62941762--62941915 Score: 109
Period size: 28 Copynumber: 5.5 Consensus size: 28
62941752 CTGACCGATC
*
62941762 TCGCACACATAGTGCTCGGTTAAAGAAT
1 TCGCACACACAGTGCTCGGTTAAAGAAT
** * **
62941790 TCGCACACACAGTG-TCCACTGACCG-AT
1 TCGCACACACAGTGCT-CGGTTAAAGAAT
* **
62941817 CTTGCACACATTGTGCTCGGTTAAAGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGAAT
** * **
62941846 TCGCACACACAGTG-TCCACTGACCG-AT
1 TCGCACACACAGTGCT-CGGTTAAAGAAT
*
62941873 CTCGCACACATAGTGCTCGGTTAAAGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGAAT
62941902 TCGCACACACAGTG
1 TCGCACACACAGTG
62941916 TCTCAATTCA
Statistics
Matches: 89, Mismatches: 29, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
27 6 0.07
28 77 0.87
29 6 0.07
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACACAGTGCTCGGTTAAAGAAT
Found at i:62941824 original size:56 final size:56
Alignment explanation
Indices: 62941736--62941917 Score: 330
Period size: 56 Copynumber: 3.3 Consensus size: 56
62941726 AAATGAAATC
*
62941736 CGCACACA-AGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
1 CGCACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
* *
62941791 CGCACACACAGTGTCCACTGACCGATCTTGCACACATTGTGCTCGGTTAAAGAATT
1 CGCACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
62941847 CGCACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
1 CGCACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
62941903 CGCACACACAGTGTC
1 CGCACACACAGTGTC
62941918 TCAATTCATT
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
55 8 0.07
56 113 0.93
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (56 bp):
CGCACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
Done.