Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 206 of 425
Found at i:62941951 original size:25 final size:25
Alignment explanation
Indices: 62941900--62941954 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
62941890 CGGTTAAAGA
* *
62941900 ATTCGCACACACAGTGTCTCAATTC
1 ATTCGCACACACAGTGCCTCAAGTC
*
62941925 ATTCGCACACATAGTGCCT-ATAGTC
1 ATTCGCACACACAGTGCCTCA-AGTC
62941950 ATTCG
1 ATTCG
62941955 TTATTACACA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTCAAGTC
Found at i:62942167 original size:40 final size:40
Alignment explanation
Indices: 62942123--62942233 Score: 195
Period size: 40 Copynumber: 2.8 Consensus size: 40
62942113 CACATCATCG
* *
62942123 GCACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
62942163 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
*
62942203 GCACGAATGCTCTTCGGGACTTAACCCGGAT
1 GCACGAATGCTCTTCGGGACTTAGCCCGGAT
62942234 CATCGTCGAG
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACCA
Found at i:62942364 original size:38 final size:38
Alignment explanation
Indices: 62942315--62942403 Score: 115
Period size: 38 Copynumber: 2.3 Consensus size: 38
62942305 TGCACATAAC
* * * *
62942315 CATCGGATCTTTACCCGGGCATAATCTCCACATATAGT
1 CATCGGGTCTTTACCCAGACACAATCTCCACATATAGT
* * *
62942353 CATTGGGTCTTTACCCAGACACAATCTCTACTTATAGT
1 CATCGGGTCTTTACCCAGACACAATCTCCACATATAGT
62942391 CATCGGGTCTTTA
1 CATCGGGTCTTTA
62942404 AGCCCGGATT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.33
Consensus pattern (38 bp):
CATCGGGTCTTTACCCAGACACAATCTCCACATATAGT
Found at i:62944417 original size:47 final size:47
Alignment explanation
Indices: 62944354--62944742 Score: 625
Period size: 47 Copynumber: 8.3 Consensus size: 47
62944344 CCCTTCGGGA
* * *
62944354 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
62944401 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
62944448 CTTATCTCATATATACACTTTCACATTCATCACATTGACCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62944495 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
62944542 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
62944589 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
62944636 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
62944683 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
62944730 CTTATCACATATA
1 CTTATCACATATA
62944743 CATATCTTGT
Statistics
Matches: 314, Mismatches: 28, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 314 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:62946260 original size:43 final size:43
Alignment explanation
Indices: 62946210--62946483 Score: 332
Period size: 43 Copynumber: 6.3 Consensus size: 43
62946200 TTTTTTAGAA
** * * *
62946210 AAAAACGCCGCTAAAGACCAGGACCTTTAGTGACGCTTTTCCC
1 AAAAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCC
* * * *
62946253 ACAAACGCCGCTAAAAGTCATGACTTTTAGCGGCGCTTTTCCT
1 AAAAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCC
* *
62946296 AAAAACGCCGCTAAAAGGTCATGACCTGTAACGGCGCTTTTCCC
1 AAAAACGCCGCT-AAAGGTCATGACCTTTAGCGGCGCTTTTCCC
* * * *
62946340 ACAAACGCCGCTACAGGTCATGACTTTTAGCGGCGCTTTTCCT
1 AAAAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCC
* ** *
62946383 AAAAACGCCGCTAAAGGTCATGACCTGTAATGCCGCTTTTCCC
1 AAAAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCC
* * * *
62946426 ACAAACGCCACTAAAGGTCATGACTTTTAGCGGCGCTTTTCCT
1 AAAAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCC
62946469 AAAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
62946484 AATATGACCT
Statistics
Matches: 191, Mismatches: 39, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
43 154 0.81
44 37 0.19
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTCCC
Found at i:62946444 original size:86 final size:86
Alignment explanation
Indices: 62946210--62946483 Score: 440
Period size: 86 Copynumber: 3.2 Consensus size: 86
62946200 TTTTTTAGAA
** * * * *
62946210 AAAAACGCCGCTAAAGACCAGGACCTTTAGTGACGCTTTTCCCACAAACGCCGCTAAAAGTCATG
1 AAAAACGCCGCTAAAGGTCATGACCTGTAATGACGCTTTTCCCACAAACGCCGCTAAAGGTCATG
62946275 ACTTTTAGCGGCGCTTTTCCT
66 ACTTTTAGCGGCGCTTTTCCT
* * *
62946296 AAAAACGCCGCTAAAAGGTCATGACCTGTAACGGCGCTTTTCCCACAAACGCCGCTACAGGTCAT
1 AAAAACGCCGCT-AAAGGTCATGACCTGTAATGACGCTTTTCCCACAAACGCCGCTAAAGGTCAT
62946361 GACTTTTAGCGGCGCTTTTCCT
65 GACTTTTAGCGGCGCTTTTCCT
* *
62946383 AAAAACGCCGCTAAAGGTCATGACCTGTAATGCCGCTTTTCCCACAAACGCCACTAAAGGTCATG
1 AAAAACGCCGCTAAAGGTCATGACCTGTAATGACGCTTTTCCCACAAACGCCGCTAAAGGTCATG
62946448 ACTTTTAGCGGCGCTTTTCCT
66 ACTTTTAGCGGCGCTTTTCCT
62946469 AAAAACGCCGCTAAA
1 AAAAACGCCGCTAAA
62946484 AATATGACCT
Statistics
Matches: 174, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
86 97 0.56
87 77 0.44
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (86 bp):
AAAAACGCCGCTAAAGGTCATGACCTGTAATGACGCTTTTCCCACAAACGCCGCTAAAGGTCATG
ACTTTTAGCGGCGCTTTTCCT
Found at i:62948369 original size:43 final size:43
Alignment explanation
Indices: 62948308--62948403 Score: 185
Period size: 43 Copynumber: 2.3 Consensus size: 43
62948298 GGAAGGACTG
62948308 TTTTAACTGTAACACAAGCATAATGATTACTAGAACAATACTT
1 TTTTAACTGTAACACAAGCATAATGATTACTAGAACAATACTT
62948351 TTTTAACTGTAACACAAGCATAATGATTACTAGAACAATACTT
1 TTTTAACTGTAACACAAGCATAATGATTACTAGAACAATACTT
62948394 TTTTAA-TGTA
1 TTTTAACTGTA
62948404 TTAGCTAAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 4 0.08
43 49 0.92
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (43 bp):
TTTTAACTGTAACACAAGCATAATGATTACTAGAACAATACTT
Found at i:62952548 original size:7 final size:7
Alignment explanation
Indices: 62952538--62952567 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
62952528 ATAAAACATA
62952538 AACCCTT
1 AACCCTT
62952545 AACCCTT
1 AACCCTT
62952552 AACCCTT
1 AACCCTT
*
62952559 AAACCTT
1 AACCCTT
62952566 AA
1 AA
62952568 ACCCCAATAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.27
Consensus pattern (7 bp):
AACCCTT
Found at i:62952570 original size:22 final size:21
Alignment explanation
Indices: 62952506--62952613 Score: 67
Period size: 21 Copynumber: 5.0 Consensus size: 21
62952496 ATTCCTAGCT
*
62952506 CCTAACCCCTAAACCTTAAAC
1 CCTAACCCTTAAACCTTAAAC
** ** *
62952527 AATAAAACATAAACCCTT-AAC
1 CCTAACCCTTAAA-CCTTAAAC
62952548 CCTTAACCCTTAAACCTTAAACC
1 CC-TAACCCTTAAACCTTAAA-C
* *
62952571 CCAATACCC-TAAAACTTAAAC
1 CCTA-ACCCTTAAACCTTAAAC
* * *
62952592 CCTAACCTTTAACCCATAAAC
1 CCTAACCCTTAAACCTTAAAC
62952613 C
1 C
62952614 ATAAACCATA
Statistics
Matches: 64, Mismatches: 17, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
20 3 0.05
21 29 0.45
22 25 0.39
23 7 0.11
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (21 bp):
CCTAACCCTTAAACCTTAAAC
Found at i:62952595 original size:14 final size:14
Alignment explanation
Indices: 62952576--62952663 Score: 61
Period size: 14 Copynumber: 6.2 Consensus size: 14
62952566 AAACCCCAAT
*
62952576 ACCCTAAAACTTAA
1 ACCCTAAAACATAA
* * *
62952590 ACCCT-AACCTTTA
1 ACCCTAAAACATAA
*
62952603 ACCCATAAACCATAA
1 ACCC-TAAAACATAA
* *
62952618 ACCATAAATCATAA
1 ACCCTAAAACATAA
* *
62952632 ACCATAAATCATAA
1 ACCCTAAAACATAA
*
62952646 ACCCATAATACATAA
1 ACCC-TAAAACATAA
62952661 ACC
1 ACC
62952664 TTACAATAGT
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
13 10 0.16
14 32 0.52
15 20 0.32
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (14 bp):
ACCCTAAAACATAA
Found at i:62952615 original size:7 final size:7
Alignment explanation
Indices: 62952605--62952663 Score: 75
Period size: 7 Copynumber: 8.3 Consensus size: 7
62952595 AACCTTTAAC
62952605 CCATAAA
1 CCATAAA
62952612 CCATAAA
1 CCATAAA
62952619 CCATAAA
1 CCATAAA
*
62952626 TCATAAA
1 CCATAAA
62952633 CCATAAA
1 CCATAAA
*
62952640 TCATAAA
1 CCATAAA
62952647 CCCATAATA
1 -CCATAA-A
62952656 -CATAAA
1 CCATAAA
62952662 CC
1 CC
62952664 TTACAATAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
6 1 0.02
7 38 0.84
8 5 0.11
9 1 0.02
ACGTcount: A:0.54, C:0.27, G:0.00, T:0.19
Consensus pattern (7 bp):
CCATAAA
Found at i:62952630 original size:21 final size:22
Alignment explanation
Indices: 62952602--62952663 Score: 83
Period size: 21 Copynumber: 2.9 Consensus size: 22
62952592 CCTAACCTTT
62952602 AACCCATAAACCATAAACCATA
1 AACCCATAAACCATAAACCATA
* *
62952624 AA-TCATAAACCATAAATCATA
1 AACCCATAAACCATAAACCATA
62952645 AACCCATAATA-CATAAACC
1 AACCCATAA-ACCATAAACC
62952664 TTACAATAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
21 19 0.56
22 14 0.41
23 1 0.03
ACGTcount: A:0.55, C:0.27, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCCATAAACCATAAACCATA
Found at i:62952936 original size:40 final size:40
Alignment explanation
Indices: 62952876--62953111 Score: 135
Period size: 40 Copynumber: 5.6 Consensus size: 40
62952866 TTATTTTTGT
62952876 GGCGTTTTTGAAAAAA-CGCCGCTAAAGATCG-AGCAT-TAGC
1 GGCGTTTTT-AAAAAAGCGCCGCTAAAGAT-GTA-CATATAGC
* * *
62952916 GGCGTTTTTTAAAAAGCGCCGCTAAAGGTGTACTTATAGC
1 GGCGTTTTTAAAAAAGCGCCGCTAAAGATGTACATATAGC
* *
62952956 GGCGTTTCTTAAAAAAGCGCCGCTAAAGCCACTAAATTACAAAATTCTTTAGC
1 GGCGTTT-TTAAAAAAGCGCCGCTAAAG--A-T---GTAC---A---TATAGC
* * * * * *
62953009 GGCGCTTTCTAGAAAA-CGCCGCTAATGCTTTATC-TTTAGC
1 GGCG-TTTTTAAAAAAGCGCCGCTAAAGATGTA-CATATAGC
62953049 GGCGTTTTCT-AAAAAGCGCCGCTAAAGATGTACATATAGC
1 GGCGTTTT-TAAAAAAGCGCCGCTAAAGATGTACATATAGC
* *
62953089 GGCGTTTTT-AGAAAGTGCCGCTA
1 GGCGTTTTTAAAAAAGCGCCGCTA
62953112 CAGCCACCAA
Statistics
Matches: 155, Mismatches: 20, Indels: 43
0.71 0.09 0.20
Matches are distributed among these distances:
39 29 0.19
40 70 0.45
41 19 0.12
44 1 0.01
46 3 0.02
47 4 0.03
49 1 0.01
52 10 0.06
53 15 0.10
54 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (40 bp):
GGCGTTTTTAAAAAAGCGCCGCTAAAGATGTACATATAGC
Found at i:62955410 original size:27 final size:26
Alignment explanation
Indices: 62955362--62955421 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
62955352 GCGAAGCTGC
*
62955362 CAGATATTGTGACTAAGTCACCAGATA
1 CAGATATTGTGACTAAGCCACCAGA-A
* *
62955389 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACTAAGCCACCAGAA
*
62955415 TAGATAT
1 CAGATAT
62955422 ATATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (26 bp):
CAGATATTGTGACTAAGCCACCAGAA
Found at i:62956200 original size:27 final size:27
Alignment explanation
Indices: 62956170--62956369 Score: 249
Period size: 27 Copynumber: 7.4 Consensus size: 27
62956160 GGGGCAAAAT
* * *
62956170 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
62956197 GGTAATTCTATCCTAC-AGGAGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTC
*
62956224 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
62956251 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
62956278 GGTAATTTTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
62956305 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
62956332 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
62956359 GGTAATTCTAC
1 GGTAATTCTAC
62956370 AACTTATCCA
Statistics
Matches: 149, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.02
27 143 0.96
28 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:62956369 original size:54 final size:54
Alignment explanation
Indices: 62956170--62956369 Score: 274
Period size: 54 Copynumber: 3.7 Consensus size: 54
62956160 GGGGCAAAAT
* ** * * *
62956170 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTATCCTACAGGAGTATTTC
1 GGTAATTCTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
62956224 GGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* **
62956278 GGTAATTTTACCTTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
62956332 GGTAATTCTACCTTATAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCTTACAAGGGTATTTCGGTAATTCTAC
62956370 AACTTATCCA
Statistics
Matches: 130, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 130 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCTTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:62963605 original size:40 final size:40
Alignment explanation
Indices: 62963586--62963737 Score: 225
Period size: 40 Copynumber: 3.8 Consensus size: 40
62963576 TAGTAATTAC
62963586 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
62963626 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
* * * * *
62963666 ATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAGTT-ACCAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TAT
* *
62963706 ATCCGGGTTAAGACCCGAAGGCAATCGTGCGA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGA
62963738 ATCACTATAA
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 100 0.99
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
Found at i:62963677 original size:80 final size:80
Alignment explanation
Indices: 62963546--62963737 Score: 226
Period size: 80 Copynumber: 2.4 Consensus size: 80
62963536 TTGGAATGAT
* * ** * * *
62963546 ATCCGGGCTAAGTCTCGAAGGCAATTATGCTAG-TAATTACATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCAT
* * *
62963610 TCGTGCGAGTTGA-TAT
65 TCGTGCAAGTT-ACCAA
* *
62963626 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCCTT
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
*
62963691 TGTGCAAGTTACCAA
66 CGTGCAAGTTACCAA
*
62963706 ATCCGGGTTAAGACCCGAAGGCAATCGTGCGA
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGCGA
62963738 ATCACTATAA
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 92 0.97
81 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTACCAA
Found at i:62963752 original size:40 final size:40
Alignment explanation
Indices: 62963586--62963791 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
62963576 TAGTAATTAC
* *
62963586 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-ATCACTAT
* *
62963626 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-ATCACTAT
* * * * *
62963666 ATCCGGGCTAAGACCCGAAGGCCTTTGTGC-AAGTTACCAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAA-TCACTAT
* *
62963706 ATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATCACTAT
* * * * * * *
62963746 AACCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCACTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATCACTAT
62963786 ATCCGG
1 ATCCGG
62963792 TTAAATCCCG
Statistics
Matches: 142, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.02
40 137 0.96
41 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATCACTAT
Found at i:62963790 original size:80 final size:80
Alignment explanation
Indices: 62963588--62963805 Score: 228
Period size: 80 Copynumber: 2.7 Consensus size: 80
62963578 GTAATTACAT
* * *
62963588 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAG-TCACTATATCCGGGTTAAGACCCGAAGGCAATC
* * *
62963652 GTGCGAGTTGATATAT
65 GTGCGAGATCATATAA
* * * * * *
62963668 CCGGGCTAAGACCCGAAGGCCTTTGTGCAAGTTACCAAATCCGGGTTAAGACCCGAAGGCAATCG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
62963733 TGCGA-ATCACTATAA
66 TGCGAGATCA-TATAA
* * * * *
62963748 CCGGGCTAGGTCCCGAAGACAATCGAGCGAGTCACTATATCC-GGTTAA-ATCCCGAAGG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATCCGGGTTAAGA-CCCGAAGG
62963806 TACGTGATTC
Statistics
Matches: 113, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
78 1 0.01
79 18 0.16
80 94 0.83
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.20
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCACTATATCCGGGTTAAGACCCGAAGGCAATCG
TGCGAGATCATATAA
Found at i:62971837 original size:40 final size:40
Alignment explanation
Indices: 62971818--62971969 Score: 225
Period size: 40 Copynumber: 3.8 Consensus size: 40
62971808 TAGTAATTAC
62971818 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
62971858 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
* * * * *
62971898 ATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAGTT-ACCAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TAT
* *
62971938 ATCCGGGTTAAGACCCGAAGGCAATCGTGCGA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGA
62971970 ATCACTATAA
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 100 0.99
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATAT
Found at i:62971966 original size:80 final size:80
Alignment explanation
Indices: 62971778--62971969 Score: 226
Period size: 80 Copynumber: 2.4 Consensus size: 80
62971768 TTGGAATGAT
* * ** * * *
62971778 ATCCGGGCTAAGTCTCGAAGGCAATTATGCTAG-TAATTACATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGCAT
* * *
62971842 TCGTGCGAGTTGATAT
65 TCGTGCAAGTTGACAA
* *
62971858 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCCTT
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
*
62971923 TGTGCAAGTT-ACCAA
66 CGTGCAAGTTGA-CAA
*
62971938 ATCCGGGTTAAGACCCGAAGGCAATCGTGCGA
1 ATCCGGGCTAAGACCCGAAGGCAATCGTGCGA
62971970 ATCACTATAA
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 92 0.97
81 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGACAA
Found at i:62971984 original size:40 final size:40
Alignment explanation
Indices: 62971818--62972022 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
62971808 TAGTAATTAC
* *
62971818 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-ATCACTAT
* *
62971858 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGA-TAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-ATCACTAT
* * * * *
62971898 ATCCGGGCTAAGACCCGAAGGCCTTTGTGC-AAGTTACCAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAA-TCACTAT
* *
62971938 ATCCGGGTTAAGACCCGAAGGCAATCGTGCGAATCACTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATCACTAT
* ** * * * *
62971978 AACCGGGCT-AGGTCCGAAGACAATCGAGCGAGTCACTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATCACTAT
62972017 ATCCGG
1 ATCCGG
62972023 TTAAATCCCG
Statistics
Matches: 141, Mismatches: 21, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
39 33 0.23
40 106 0.75
41 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAATCACTAT
Found at i:62971984 original size:80 final size:80
Alignment explanation
Indices: 62971820--62971987 Score: 214
Period size: 80 Copynumber: 2.1 Consensus size: 80
62971810 GTAATTACAT
* * * *
62971820 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGACAAATCCGGGCTAAGACCCGAAGGCAATCG
* * *
62971885 TGCGAGTTGATATAT
66 TGCGAGATCATATAA
* * *
62971900 CCGGGCTAAGACCCGAAGGCCTTTGTGCAAGTT-ACCAAATCCGGGTTAAGACCCGAAGGCAATC
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGA-CAAATCCGGGCTAAGACCCGAAGGCAATC
62971964 GTGCGA-ATCACTATAA
65 GTGCGAGATCA-TATAA
62971980 CCGGGCTA
1 CCGGGCTA
62971988 GGTCCGAAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
79 3 0.04
80 73 0.96
ACGTcount: A:0.27, C:0.25, G:0.28, T:0.20
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGACAAATCCGGGCTAAGACCCGAAGGCAATCG
TGCGAGATCATATAA
Found at i:62972034 original size:39 final size:40
Alignment explanation
Indices: 62971938--62972035 Score: 103
Period size: 39 Copynumber: 2.5 Consensus size: 40
62971928 AAGTTACCAA
* *
62971938 ATCCGGGTTAAGA-CCCGAAGGCAATCGTGCGAATCACTAT
1 ATCCGGGTTAA-ATCCCGAAGACAATCGAGCGAATCACTAT
* * ** *
62971978 AACCGGGCTAGGT-CCGAAGACAATCGAGCGAGTCACTAT
1 ATCCGGGTTAAATCCCGAAGACAATCGAGCGAATCACTAT
62972017 ATCC-GGTTAAATCCCGAAG
1 ATCCGGGTTAAATCCCGAAG
62972036 GTACGTGATT
Statistics
Matches: 45, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
38 5 0.11
39 32 0.71
40 8 0.18
ACGTcount: A:0.31, C:0.26, G:0.26, T:0.18
Consensus pattern (40 bp):
ATCCGGGTTAAATCCCGAAGACAATCGAGCGAATCACTAT
Found at i:62985887 original size:28 final size:28
Alignment explanation
Indices: 62985855--62985953 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
62985845 GCAATAAGCC
*
62985855 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
62985883 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
62985911 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
62985940 CGCACACTTAGTGC
1 CGCACACTTAGTGC
62985954 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:62987627 original size:27 final size:27
Alignment explanation
Indices: 62987597--62987796 Score: 179
Period size: 27 Copynumber: 7.4 Consensus size: 27
62987587 GTGGCAAAAT
* *
62987597 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
62987624 GGTAATTCTACCCTAC-AGGGTTATTTT
1 GGTAATTTTACCCTACAAGGG-TATTTC
62987651 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* ** * *
62987678 GGTAATTCTGTCTTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
62987705 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
** * * *
62987732 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
62987759 AGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
62987786 GGTAATTTTAC
1 GGTAATTTTAC
62987797 AACTTATCCA
Statistics
Matches: 146, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.05
27 132 0.90
28 7 0.05
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:62987663 original size:54 final size:54
Alignment explanation
Indices: 62987598--62987792 Score: 246
Period size: 54 Copynumber: 3.6 Consensus size: 54
62987588 TGGCAAAATG
* * * * **
62987598 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGTTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* ** *
62987652 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTGTCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * ** *
62987706 GTAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
62987760 GTAATTCTACCTTACAAGGGTATTTCGGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATT
62987793 TTACAACTTA
Statistics
Matches: 117, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 117 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:62987741 original size:81 final size:81
Alignment explanation
Indices: 62987611--62987792 Score: 238
Period size: 81 Copynumber: 2.2 Consensus size: 81
62987601 ATTTTACCCC
* * *** *
62987611 ACAAGGGTATCTCGGTAATTCTACCCTACAGGGTTATTTTGGTATTTCTACCCTACAAGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATT
* **
62987676 TCGGTAATTCTGTCTT
66 TCAGTAATTCTACCTT
* * * * *
62987692 ACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATT
62987757 TCAGTAATTCTACCTT
66 TCAGTAATTCTACCTT
62987773 ACAAGGGTATTTCGGTAATT
1 ACAAGGGTATTTCGGTAATT
62987793 TTACAACTTA
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (81 bp):
ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATT
TCAGTAATTCTACCTT
Found at i:62991309 original size:39 final size:39
Alignment explanation
Indices: 62991225--62991387 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
62991215 TATGGTAACC
* *
62991225 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * * *
62991265 AGCACAATTGCCTTCGGGCTTAGCCTGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
62991304 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
62991343 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
62991382 CGCACA
1 CGCACA
62991388 TTCATTCACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 96 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:62994352 original size:27 final size:27
Alignment explanation
Indices: 62994314--62994366 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
62994304 ATCATCATTC
62994314 TACCATATAGGGGTATTACGATAATTA
1 TACCATATAGGGGTATTACGATAATTA
* *
62994341 TACCCTATAGGGGTATTACGGTAATT
1 TACCATATAGGGGTATTACGATAATT
62994367 TTACAAACTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (27 bp):
TACCATATAGGGGTATTACGATAATTA
Found at i:63002177 original size:11 final size:11
Alignment explanation
Indices: 63002161--63002190 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
63002151 GAAAACTAGT
63002161 AAATTAGAATA
1 AAATTAGAATA
*
63002172 AAATTAAAATA
1 AAATTAGAATA
63002183 AAATTAGA
1 AAATTAGA
63002191 TTGCAAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (11 bp):
AAATTAGAATA
Found at i:63014283 original size:25 final size:25
Alignment explanation
Indices: 63014254--63014301 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63014244 TTATAATATG
* * *
63014254 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63014279 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63014302 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63014370 original size:20 final size:20
Alignment explanation
Indices: 63014345--63014403 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
63014335 TAAATATGGT
63014345 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
63014365 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
63014385 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
63014404 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:63014385 original size:11 final size:11
Alignment explanation
Indices: 63014349--63014403 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
63014339 TATGGTATGT
63014349 ATGATATGCAC
1 ATGATATGCAC
* *
63014360 ATGAAATG--T
1 ATGATATGCAC
63014369 ATGATATGCAC
1 ATGATATGCAC
*
63014380 ATGATATG--T
1 ATGATATGCAC
63014389 ATGATATGCAC
1 ATGATATGCAC
63014400 ATGA
1 ATGA
63014404 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:63014481 original size:24 final size:24
Alignment explanation
Indices: 63014454--63014572 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
63014444 GAGGAAGTGA
*
63014454 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
63014478 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
63014501 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
63014525 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63014549 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63014573 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:63014523 original size:47 final size:48
Alignment explanation
Indices: 63014454--63014572 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
63014444 GAGGAAGTGA
63014454 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
63014501 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
63014549 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63014573 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:63014799 original size:31 final size:31
Alignment explanation
Indices: 63014764--63014843 Score: 142
Period size: 31 Copynumber: 2.5 Consensus size: 31
63014754 CGTTTACAGT
63014764 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63014795 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
63014826 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
63014844 GCATGATTGG
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
31 34 0.72
32 13 0.28
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63017333 original size:44 final size:43
Alignment explanation
Indices: 63017257--63017717 Score: 299
Period size: 42 Copynumber: 10.9 Consensus size: 43
63017247 GGAACGTTGA
* ** *
63017257 CATCAATCTGAGATATCGTGTAAGACTGTGTCTAGGACACAGG
1 CATCAATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGG
* * **
63017300 CCTCAATTTGAGATTTACGTGTAAGACCATGTCTGGGACATTGG
1 CATCAATCTGAGATTT-CGTGTAAGACCATGTCTGGGACACAGG
*
63017344 CATCGTATCT--GATTTCGTGTAAGACCATGTCTGGGACATC-GG
1 CATC-AATCTGAGATTTCGTGTAAGACCATGTCTGGGACA-CAGG
* * *
63017386 CATCGTATCT-A-ATTACGTGTAAGACCATGTTTGGGACATC-GG
1 CATC-AATCTGAGATTTCGTGTAAGACCATGTCTGGGACA-CAGG
* *
63017428 CATCGTATCT--GATTACGTGTAAGACCATGTCTGGGACATC-GG
1 CATC-AATCTGAGATTTCGTGTAAGACCATGTCTGGGACA-CAGG
* *
63017470 CATCGTATCT--GATTACGTGTAAGACCATGTCTGGGACATC-GG
1 CATC-AATCTGAGATTTCGTGTAAGACCATGTCTGGGACA-CAGG
* *
63017512 CATCGTATCT--GATTTCATGTAAGACCATGTCTGGGACATC-GG
1 CATC-AATCTGAGATTTCGTGTAAGACCATGTCTGGGACA-CAGG
* *
63017554 CATCGTATCT--GATTTCGTGTAAGAACATGTCTGGGACATC-GG
1 CATC-AATCTGAGATTTCGTGTAAGACCATGTCTGGGACA-CAGG
* * * *
63017596 CATCATAT-T-TGATTTTGTGTAAGACCATGTCTAGGATATC-GG
1 CATCA-ATCTGAGATTTCGTGTAAGACCATGTCTGGGACA-CAGG
* * * *
63017638 CATCGTATCT--GATTTCATGTAAGACCATGTCTGGGACGTC-GA
1 CATC-AATCTGAGATTTCGTGTAAGACCATGTCTGGGAC-ACAGG
* * *
63017680 CATCGTATCT--GATTTCGTGTAAGACCCTGTCTAGGACA
1 CATC-AATCTGAGATTTCGTGTAAGACCATGTCTGGGACA
63017718 AAGGTATTGA
Statistics
Matches: 373, Mismatches: 35, Indels: 22
0.87 0.08 0.05
Matches are distributed among these distances:
41 1 0.00
42 325 0.87
43 19 0.05
44 25 0.07
45 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (43 bp):
CATCAATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGG
Found at i:63017370 original size:42 final size:42
Alignment explanation
Indices: 63017311--63017717 Score: 643
Period size: 42 Copynumber: 9.7 Consensus size: 42
63017301 CTCAATTTGA
*
63017311 GATTTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCT
1 GATTT-CGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
63017354 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * *
63017396 AATTACGTGTAAGACCATGTTTGGGACATCGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
*
63017438 GATTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
*
63017480 GATTACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
*
63017522 GATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * *
63017564 GATTTCGTGTAAGAACATGTCTGGGACATCGGCATCATATTT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * *
63017606 GATTTTGTGTAAGACCATGTCTAGGATATCGGCATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* * *
63017648 GATTTCATGTAAGACCATGTCTGGGACGTCGACATCGTATCT
1 GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
* *
63017690 GATTTCGTGTAAGACCCTGTCTAGGACA
1 GATTTCGTGTAAGACCATGTCTGGGACA
63017718 AAGGTATTGA
Statistics
Matches: 336, Mismatches: 28, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
42 331 0.99
43 5 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT
Found at i:63018829 original size:13 final size:13
Alignment explanation
Indices: 63018811--63018835 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63018801 CTAAGTATCA
63018811 CACGGCCGTGTGC
1 CACGGCCGTGTGC
63018824 CACGGCCGTGTG
1 CACGGCCGTGTG
63018836 TAAAAGTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.36, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGCCGTGTGC
Found at i:63023421 original size:29 final size:30
Alignment explanation
Indices: 63023365--63023424 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
63023355 TTCCCGAGCC
*
63023365 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATACAAAAGTT
* * *
63023395 TAGGGGAAAAA-TGTAATTTTACTAAAGTT
1 TAGGGGAAAAAGTGTAAATATACAAAAGTT
63023424 T
1 T
63023425 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.43, C:0.03, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATACAAAAGTT
Found at i:63023999 original size:68 final size:63
Alignment explanation
Indices: 63023889--63024141 Score: 201
Period size: 68 Copynumber: 3.9 Consensus size: 63
63023879 ATACAGATGG
** ** * *
63023889 TATGTAGCTAGGTCACATGTATGGTGTTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTACG-G--
63023952 ATTA
61 A-TA
*
63023956 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC-GGATA
* * * * * *
63024021 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGTGA
1 TATGTAGCTAGGTCACATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACG-GA
63024086 TA
62 TA
* * *
63024088 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
63024142 CAAAATTATG
Statistics
Matches: 153, Mismatches: 23, Indels: 24
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 24 0.16
65 3 0.02
66 23 0.15
67 32 0.21
68 49 0.32
69 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (63 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGGATA
Found at i:63030543 original size:64 final size:65
Alignment explanation
Indices: 63030387--63030632 Score: 214
Period size: 68 Copynumber: 3.7 Consensus size: 65
63030377 TGGATGATAC
* ** * ** * *
63030387 AGATAATATGTAGCTAGGTCACATGTATGGTGCTGGGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGAT-ATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGCTAC
63030451 AAG
64 -AG
* *
63030454 ACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC
1 AGA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTAC
63030519 AG
64 AG
* * * *
63030521 -GATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTA
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTA
63030585 C-G
63 CAG
* * * *
63030587 AGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATG
1 AGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATG
63030633 CGTACAAAGA
Statistics
Matches: 147, Mismatches: 24, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
63 8 0.05
64 27 0.18
65 2 0.01
66 24 0.16
67 37 0.25
68 48 0.33
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.26
Consensus pattern (65 bp):
AGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACAG
Found at i:63030580 original size:67 final size:65
Alignment explanation
Indices: 63030438--63030618 Score: 206
Period size: 67 Copynumber: 2.7 Consensus size: 65
63030428 CATCATGTGT
* * * *
63030438 ACAAGAGAGCTACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC-AGAGA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGAGGACACCATG
63030503 TAG
63 TAG
* *
63030506 ACAAGAGAGCTACAG-GATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATG
1 ACAAGAGAGCTACAGAGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-AGGACACCATG
63030570 TAG
63 TAG
* * *
63030573 ACAAGAGAGCTAC-GAGATAAAT-TGGCTAGGTCACATGGGTGGTACT
1 ACAAGAGAGCTACAGAGATATATGTAGCTAGGTCGCATGGGTGGTACT
63030619 GAGTGTTCAC
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
64 26 0.27
65 2 0.02
66 24 0.24
67 33 0.34
68 13 0.13
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (65 bp):
ACAAGAGAGCTACAGAGATATATGTAGCTAGGTCGCATGGGTGGTACTATGAGGACACCATGTAG
Found at i:63031272 original size:21 final size:21
Alignment explanation
Indices: 63031243--63031297 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
63031233 AGCGATTTAT
*
63031243 TAAGCTCAAGTGGTATGACCC
1 TAAGGTCAAGTGGTATGACCC
63031264 TAAGGTCAAGTGGTATGACCC
1 TAAGGTCAAGTGGTATGACCC
63031285 TAAGGTCAAGTGG
1 TAAGGTCAAGTGG
63031298 GTTTAGAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (21 bp):
TAAGGTCAAGTGGTATGACCC
Found at i:63033756 original size:49 final size:49
Alignment explanation
Indices: 63033696--63033959 Score: 447
Period size: 49 Copynumber: 5.4 Consensus size: 49
63033686 TACATATATG
* * * *
63033696 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
63033745 TGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
63033794 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* *
63033843 TGTGATGAGGCCTACTGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
63033892 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
63033941 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
63033960 TAATGTAAAA
Statistics
Matches: 207, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 207 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:63034118 original size:37 final size:37
Alignment explanation
Indices: 63034061--63034144 Score: 143
Period size: 37 Copynumber: 2.3 Consensus size: 37
63034051 GGAATATGTT
*
63034061 CCGGGTGAGA-CCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
63034097 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
63034134 CCGGGTAAGAC
1 CCGGGTAAGAC
63034145 TTCTTTTATA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
36 9 0.20
37 36 0.80
ACGTcount: A:0.25, C:0.19, G:0.35, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:63036842 original size:78 final size:78
Alignment explanation
Indices: 63036629--63036861 Score: 351
Period size: 78 Copynumber: 3.0 Consensus size: 78
63036619 AAGACACTAA
* * * *
63036629 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCA
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCCGGCTAAAGTCCCGCA
63036694 GGCTTCGTGCTGG
66 GGCTTCGTGCTGG
*
63036707 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTAT-CCGGACTAAAGTCCCGC
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCCGG-CTAAAGTCCCGC
63036771 AGGCTTCGTGCTGG
65 AGGCTTCGTGCTGG
* * ** *
63036785 AAATGTATCCGGGCCAAAGTCCCGTAGGCTTCGTGCTGGAAATGTATCCCGGTTAAAGTATCGTA
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCCGGCTAAAGTCCCGCA
*
63036850 GGCTTTGTGCTG
66 GGCTTCGTGCTG
63036862 ATAATATAAT
Statistics
Matches: 141, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
77 3 0.02
78 134 0.95
79 4 0.03
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (78 bp):
AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCCGGCTAAAGTCCCGCA
GGCTTCGTGCTGG
Found at i:63036843 original size:117 final size:117
Alignment explanation
Indices: 63036629--63036861 Score: 367
Period size: 117 Copynumber: 2.0 Consensus size: 117
63036619 AAGACACTAA
*
63036629 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCA
1 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCA
* *
63036694 GGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
66 GGCTTCGTGCTGGAAATATATCCCGGCCAAAGTACCGCAGGCTTCGTGCTGG
* *
63036746 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCCAAAGTCCCGTA
1 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCA
* ** * * *
63036811 GGCTTCGTGCTGGAAATGTATCCCGGTTAAAGTATCGTAGGCTTTGTGCTG
66 GGCTTCGTGCTGGAAATATATCCCGGCCAAAGTACCGCAGGCTTCGTGCTG
63036862 ATAATATAAT
Statistics
Matches: 105, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
117 105 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (117 bp):
AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCA
GGCTTCGTGCTGGAAATATATCCCGGCCAAAGTACCGCAGGCTTCGTGCTGG
Found at i:63036861 original size:39 final size:39
Alignment explanation
Indices: 63036629--63036833 Score: 356
Period size: 39 Copynumber: 5.3 Consensus size: 39
63036619 AAGACACTAA
*
63036629 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
*
63036668 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
*
63036707 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
* *
63036746 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
*
63036785 AAATGTATCCGGGCCAAAGTCCCGTAGGCTTCGTGCTGG
1 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
63036824 AAATGTATCC
1 AAATGTATCC
63036834 CGGTTAAAGT
Statistics
Matches: 158, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 158 1.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.22
Consensus pattern (39 bp):
AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:63047740 original size:23 final size:24
Alignment explanation
Indices: 63047696--63047759 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 24
63047686 TGAGTATTTA
*
63047696 AATGTATAT-ATTTAATTGAATTG
1 AATGTATATGATTTAATTAAATTG
*
63047719 AATGTATATGATTTGA-TAAATTG
1 AATGTATATGATTTAATTAAATTG
63047742 AAT-TAT-TGA-TT-ATTAAAT
1 AATGTATATGATTTAATTAAAT
63047760 GCTTAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 1 0.03
20 7 0.19
21 3 0.08
22 3 0.08
23 18 0.49
24 5 0.14
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (24 bp):
AATGTATATGATTTAATTAAATTG
Found at i:63047963 original size:23 final size:23
Alignment explanation
Indices: 63047919--63048023 Score: 131
Period size: 23 Copynumber: 4.6 Consensus size: 23
63047909 TTAGCTTGTA
* *
63047919 AGAGCTTACTGTTTTCAACTCATT
1 AGAGCTTACTG-TTTCAGCTCAAT
*
63047943 GGAGCTTACTGTTTCAGCTCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
* *
63047966 AGAGCTTACT-ATTCAGCTCGAT
1 AGAGCTTACTGTTTCAGCTCAAT
* *
63047988 AGAGCTTACCGTTTCAGCCCAAT
1 AGAGCTTACTGTTTCAGCTCAAT
63048011 AGAGCTTACTGTT
1 AGAGCTTACTGTT
63048024 CATCAACTTA
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
22 19 0.28
23 40 0.58
24 10 0.14
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (23 bp):
AGAGCTTACTGTTTCAGCTCAAT
Found at i:63048237 original size:20 final size:20
Alignment explanation
Indices: 63048194--63048239 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
63048184 AGATATGTGT
* * *
63048194 TTATATAGATGAGCTACTAT
1 TTATATAGATGAACCACTAG
*
63048214 TTATATAGATGAACCACTGG
1 TTATATAGATGAACCACTAG
63048234 TTATAT
1 TTATAT
63048240 GAATGAACTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (20 bp):
TTATATAGATGAACCACTAG
Found at i:63052370 original size:8 final size:8
Alignment explanation
Indices: 63052357--63052385 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
63052347 CCGTGTGGCC
63052357 GATTTGGG
1 GATTTGGG
63052365 GATTTGGG
1 GATTTGGG
63052373 GATTTGGG
1 GATTTGGG
63052381 GATTT
1 GATTT
63052386 TATCGATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.45, T:0.41
Consensus pattern (8 bp):
GATTTGGG
Found at i:63052698 original size:21 final size:21
Alignment explanation
Indices: 63052674--63052732 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
63052664 ATCCCTAGTT
*
63052674 CACACGGGCGTGTGCCTATGC
1 CACACGGTCGTGTGCCTATGC
*
63052695 CACACGGTCATGTGCCTATGC
1 CACACGGTCGTGTGCCTATGC
*
63052716 CACAAGGTCGTGTGCCT
1 CACACGGTCGTGTGCCT
63052733 CCCTCCATAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22
Consensus pattern (21 bp):
CACACGGTCGTGTGCCTATGC
Found at i:63056123 original size:21 final size:21
Alignment explanation
Indices: 63056099--63056157 Score: 84
Period size: 21 Copynumber: 2.8 Consensus size: 21
63056089 GTCCCTAGTT
63056099 CACACGGGT-GTGTGCCTATGC
1 CACAC-GGTCGTGTGCCTATGC
* *
63056120 CACAAGGTCATGTGCCTATGC
1 CACACGGTCGTGTGCCTATGC
63056141 CACACGGTCGTGTGCCT
1 CACACGGTCGTGTGCCT
63056158 CCCTCCATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 3 0.09
21 30 0.91
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.24
Consensus pattern (21 bp):
CACACGGTCGTGTGCCTATGC
Found at i:63065887 original size:29 final size:29
Alignment explanation
Indices: 63065848--63065926 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
63065838 CTTAATAATC
* *
63065848 AACCACGCACACTTAGTTCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
63065878 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
63065907 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
63065927 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.14, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:63071674 original size:16 final size:16
Alignment explanation
Indices: 63071635--63071665 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63071625 AAATTAAATA
*
63071635 AATAAAATAAATAAAC
1 AATAAAATAAACAAAC
63071651 AATAAAATAAACAAA
1 AATAAAATAAACAAA
63071666 TAATTAAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.16
Consensus pattern (16 bp):
AATAAAATAAACAAAC
Found at i:63075075 original size:40 final size:39
Alignment explanation
Indices: 63074993--63075213 Score: 259
Period size: 40 Copynumber: 5.6 Consensus size: 39
63074983 TCGAATGATG
* * *
63074993 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
*
63075032 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
63075072 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
63075112 TCCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAA
*
63075151 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
63075192 -CTGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGT-CCGAAGGCAT
63075214 CTGAACGAGT
Statistics
Matches: 161, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
38 1 0.01
39 43 0.27
40 107 0.66
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:63075198 original size:79 final size:78
Alignment explanation
Indices: 63074993--63075213 Score: 275
Period size: 79 Copynumber: 2.8 Consensus size: 78
63074983 TCGAATGATG
* * * *
63074993 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-AAGTTACTATATCCGGGCTAAGCT-CGAAGGCATTG
63075057 GTGCGAGTTACTAAA
64 GTGCGAGTTACTAAA
*
63075072 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTA-ATTCCGGGCTAAGCTCGAAGGCATTG
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGGCTAAGCTCGAAGGCATTG
63075136 GTGCGAGTTACTAAA
64 GTGCGAGTTACTAAA
* * * * * *
63075151 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACTGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAG-CTCGAAGGCAT
63075214 CTGAACGAGT
Statistics
Matches: 124, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 77 0.62
80 39 0.31
81 7 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGCTCGAAGGCATTGGT
GCGAGTTACTAAA
Found at i:63075235 original size:119 final size:119
Alignment explanation
Indices: 63074993--63075219 Score: 266
Period size: 119 Copynumber: 1.9 Consensus size: 119
63074983 TCGAATGATG
* *
63074993 TCCGGGCTAAGTCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
* **
63075058 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAT
66 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATCTGAACAAGTTACTAAT
* * **
63075112 TCCGGGCTAAG-CTCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTC-CGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
63075174 TTGTGCGAGTTACTATAA-CTGGGCTATG-TCCCGAAGGCATCTGAAC
63 TTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATCTGAAC
63075220 GAGTAGCTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
118 3 0.03
119 80 0.88
120 8 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATCTGAACAAGTTACTAAT
Found at i:63075238 original size:79 final size:79
Alignment explanation
Indices: 63075005--63075249 Score: 207
Period size: 79 Copynumber: 3.1 Consensus size: 79
63074995 CGGGCTAAGT
* * * * **
63075005 CCGAAGGC-TTTGTGCTAAGTGACT-ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTAC
1 CCGAAGGCATTTGTGC-AAGTTACTAATA-CCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTAC
**
63075068 TAAATCCGGACTAAGAT-
63 TAAATCCGGGTTAA-ATC
* * **
63075085 CCGAAGGCATTTGTGCAAGTTACTAATTCCGGGCTAAGCTCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
63075150 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
63075164 CCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATCT-GAACGAG-TAG
1 CCGAAGGCATTTGTGCAAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCAT-TGGAACGAGTTA-
* *
63075226 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
63075243 CCGAAGG
1 CCGAAGG
63075250 TACGTGATTT
Statistics
Matches: 139, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
78 3 0.02
79 80 0.58
80 46 0.33
81 10 0.07
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:63083193 original size:40 final size:39
Alignment explanation
Indices: 63083136--63083357 Score: 234
Period size: 40 Copynumber: 5.6 Consensus size: 39
63083126 TCGAATGATG
* *
63083136 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-AAGTTACTAAA
* *
63083176 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTAAA
* * *
63083216 TCCGGACTAAGATCCGAAGGCATTTTTGCAAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTAAA
* *
63083256 TCCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCAAGTTACTAAA
* * *
63083295 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTA-AA
*
63083336 -CCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGT-CCGAAGGCAT
63083358 CTGAACGAGT
Statistics
Matches: 159, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 32 0.20
40 115 0.72
41 11 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:63083297 original size:79 final size:80
Alignment explanation
Indices: 63083136--63083357 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 80
63083126 TCGAATGATG
*
63083136 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATATCCGGACTAAGATCCGAAGGCATT
*
63083200 TGTGCGAGTTACTAAA
65 GGTGCGAGTTACTAAA
* * * *
63083216 TCCGGACTAAGAT-CCGAAGGCATTTTTGCAAGTTACTA-ATTCCGGGCTAAGCT-CGAAGGCAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTATA-TCCGGACTAAGATCCGAAGGCAT
63083278 TGGTGCGAGTTACTAAA
64 TGGTGCGAGTTACTAAA
* * * * * *
63083295 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGACTAAGAT-CCGAAGGCAT
63083358 CTGAACGAGT
Statistics
Matches: 122, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 2 0.02
79 66 0.54
80 47 0.39
81 7 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGACTAAGATCCGAAGGCATTG
GTGCGAGTTACTAAA
Found at i:63083379 original size:119 final size:120
Alignment explanation
Indices: 63083136--63083363 Score: 259
Period size: 119 Copynumber: 1.9 Consensus size: 120
63083126 TCGAATGATG
* *
63083136 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* ***
63083201 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTTTGCAAGTTACTAAT
66 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATCTGAACAAGTTACTAAT
* * * **
63083256 TCCGGGCTAAG-CTCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
63083318 TTGTGCGAGTTATTATAA-CCGGGCTATG-TCCCGAAGGCATCTGAAC
64 TTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATCTGAAC
63083364 GAGTAGCTAT
Statistics
Matches: 90, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
118 2 0.02
119 69 0.77
120 19 0.21
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATCTGAACAAGTTACTAAT
Found at i:63087591 original size:11 final size:11
Alignment explanation
Indices: 63087575--63087603 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
63087565 GCTGTAAACA
63087575 TTTAAAATAAT
1 TTTAAAATAAT
63087586 TTTAAAATAAT
1 TTTAAAATAAT
63087597 TTTAAAA
1 TTTAAAA
63087604 CCTCAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TTTAAAATAAT
Found at i:63092176 original size:21 final size:22
Alignment explanation
Indices: 63092126--63092225 Score: 123
Period size: 21 Copynumber: 4.4 Consensus size: 22
63092116 GAGGAAGTGA
63092126 AAAAGGGCTTATGCCCAGTTTAT
1 AAAAGGGCTTATGCCCAG-TTAT
63092149 CAAAAGGGCTT-TGCCCAGTTAT
1 -AAAAGGGCTTATGCCCAGTTAT
63092171 AAAAGGGCTTATG-CCAGTTAT
1 AAAAGGGCTTATGCCCAGTTAT
* *
63092192 TAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATG-CCCAGTTA-T
63092216 AAAAGAGGCT
1 AAAAG-GGCT
63092226 AGGCCTCCAG
Statistics
Matches: 68, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
21 29 0.43
22 6 0.09
23 14 0.21
24 15 0.22
25 4 0.06
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (22 bp):
AAAAGGGCTTATGCCCAGTTAT
Found at i:63092503 original size:29 final size:30
Alignment explanation
Indices: 63092422--63092513 Score: 159
Period size: 29 Copynumber: 3.1 Consensus size: 30
63092412 CGTTTACAGT
63092422 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGG-CCAGTAATATGAAATATGA
63092453 AAAGGCTTCGGCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCAGTAATATGAAATATGA
*
63092483 AAA-GCTTCGGCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCAGTAATATGAAATATGA
63092512 AA
1 AA
63092514 TATGAAAGGC
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
29 27 0.45
30 22 0.37
31 11 0.18
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTAATATGAAATATGA
Found at i:63100104 original size:20 final size:20
Alignment explanation
Indices: 63100079--63100137 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
63100069 TAAATATGGT
*
63100079 ATGTATGAGATGCACATGAC
1 ATGTATGATATGCACATGAC
*
63100099 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
63100119 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
63100138 GGTAATCATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:63100215 original size:24 final size:24
Alignment explanation
Indices: 63100188--63100329 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
63100178 GAGGAAGTGA
63100188 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
63100212 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
63100236 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
63100259 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
63100283 GAAAGGGCTT-TTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
63100306 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63100330 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
23 40 0.37
24 61 0.56
25 8 0.07
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:63100326 original size:71 final size:71
Alignment explanation
Indices: 63100188--63100330 Score: 209
Period size: 71 Copynumber: 2.0 Consensus size: 71
63100178 GAGGAAGTGA
*
63100188 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAGGCCCC
63100253 AGTTAT
66 AGTTAT
** * *
63100259 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTT-TTCCCCAGTTATTAAAAGAGGC-TAGGCCT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTAGGCC-
63100322 CCAGTTAT
64 CCAGTTAT
63100330 A
1 A
63100331 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
70 21 0.32
71 44 0.68
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTAGGCCCC
AGTTAT
Found at i:63100556 original size:31 final size:31
Alignment explanation
Indices: 63100521--63100615 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
63100511 CGTTTACAGT
63100521 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63100552 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
63100583 AAAGGCTTCGGCCCAGTATTATGAAGTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63100614 AA
1 AA
63100616 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63101741 original size:13 final size:13
Alignment explanation
Indices: 63101723--63101747 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63101713 TCAAATAATA
63101723 AAATTTTCACACG
1 AAATTTTCACACG
63101736 AAATTTTCACAC
1 AAATTTTCACAC
63101748 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:63105639 original size:27 final size:26
Alignment explanation
Indices: 63105603--63105713 Score: 102
Period size: 27 Copynumber: 4.2 Consensus size: 26
63105593 TAGCATGGCT
* *
63105603 ACCAGA-ACAGATAATGTGATAGAGTC
1 ACCAGATACAGATAATGTG-CAGAGCC
* *
63105629 ACTAGATACAGAAAATCGTGCAGAGCC
1 ACCAGATACAGATAAT-GTGCAGAGCC
63105656 ACCAGA-ACAGATATATGTGGCAGAGCC
1 ACCAGATACAGATA-ATGT-GCAGAGCC
*
63105683 ACCAGAT-CAGATAATTGTGGAGTAGCC
1 ACCAGATACAGATAA-TGTGCAG-AGCC
63105710 ACCA
1 ACCA
63105714 AGACACTTCC
Statistics
Matches: 71, Mismatches: 7, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
26 17 0.24
27 51 0.72
28 3 0.04
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (26 bp):
ACCAGATACAGATAATGTGCAGAGCC
Found at i:63105713 original size:54 final size:53
Alignment explanation
Indices: 63105603--63105713 Score: 134
Period size: 53 Copynumber: 2.1 Consensus size: 53
63105593 TAGCATGGCT
* * *
63105603 ACCAGAACAGATAATGTGATAGAGTCACTAGATACAGAAAATCGTGCAGAGCC
1 ACCAGAACAGATAATGTGACAGAGCCACCAGATACAGAAAATCGTGCAGAGCC
* * * *
63105656 ACCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGAGTAGCC
1 ACCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGAAAATCGTGCAG-AGCC
63105710 ACCA
1 ACCA
63105714 AGACACTTCC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
53 25 0.51
54 24 0.49
ACGTcount: A:0.39, C:0.21, G:0.23, T:0.17
Consensus pattern (53 bp):
ACCAGAACAGATAATGTGACAGAGCCACCAGATACAGAAAATCGTGCAGAGCC
Found at i:63113518 original size:28 final size:26
Alignment explanation
Indices: 63113468--63113579 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 26
63113458 AGCATGGCTG
*
63113468 CCAGAACAGATAATGTGACAGAGCCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
63113494 CCAGATACAAATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
63113522 CCAGAACAGATATATGTAGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
63113549 CCA-AATCAGATAATTGTGGC-GTAGCCA
1 CCAGAA-CAGATAA-TGTGGCAG-AGCCA
63113576 CCAG
1 CCAG
63113580 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 12
0.81 0.05 0.13
Matches are distributed among these distances:
26 9 0.12
27 47 0.64
28 18 0.24
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:63113532 original size:54 final size:54
Alignment explanation
Indices: 63113468--63113579 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
63113458 AGCATGGCTG
*
63113468 CCAGAACAGATA-ATGT-GACAGAGCCACCAGATACAAATAATCGTGGCAG-AGCCA
1 CCAGAACAGATATATGTAG-CAGAGCCACCAAAT-CAAATAATCGTGGC-GTAGCCA
* *
63113522 CCAGAACAGATATATGTAGCAGAGCCACCAAATCAGATAATTGTGGCGTAGCCA
1 CCAGAACAGATATATGTAGCAGAGCCACCAAATCAAATAATCGTGGCGTAGCCA
63113576 CCAG
1 CCAG
63113580 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
53 1 0.02
54 33 0.63
55 17 0.33
56 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.15
Consensus pattern (54 bp):
CCAGAACAGATATATGTAGCAGAGCCACCAAATCAAATAATCGTGGCGTAGCCA
Found at i:63117214 original size:53 final size:53
Alignment explanation
Indices: 63117139--63117294 Score: 179
Period size: 55 Copynumber: 2.9 Consensus size: 53
63117129 TTTTGAACTT
* *
63117139 ACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATAAAATC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAAATC
* * * * * *
63117192 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTGTATTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCC-T-TATAAAATC
* * *
63117247 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATA
63117295 GAACTTATCA
Statistics
Matches: 84, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.02
53 38 0.45
54 2 0.02
55 40 0.48
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAAAATC
Found at i:63117272 original size:55 final size:53
Alignment explanation
Indices: 63117134--63117309 Score: 192
Period size: 53 Copynumber: 3.3 Consensus size: 53
63117124 TTCCTTTTTG
* * *
63117134 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATA
* * * * *
63117187 AAATCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTGTATT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCC-T-TATA
* ***
63117242 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATA
*
63117295 GAACTTATCAATGCC
1 -AACTTACCAATGCC
63117310 TGATTTCCTT
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 41 0.41
54 16 0.16
55 40 0.40
56 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATA
Found at i:63117319 original size:33 final size:33
Alignment explanation
Indices: 63117277--63117375 Score: 198
Period size: 33 Copynumber: 3.0 Consensus size: 33
63117267 TGGTCTTACA
63117277 TGATTTCCTTGCCTTATAGAACTTATCAATGCC
1 TGATTTCCTTGCCTTATAGAACTTATCAATGCC
63117310 TGATTTCCTTGCCTTATAGAACTTATCAATGCC
1 TGATTTCCTTGCCTTATAGAACTTATCAATGCC
63117343 TGATTTCCTTGCCTTATAGAACTTATCAATGCC
1 TGATTTCCTTGCCTTATAGAACTTATCAATGCC
63117376 ATGCCTTGGC
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 66 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.39
Consensus pattern (33 bp):
TGATTTCCTTGCCTTATAGAACTTATCAATGCC
Found at i:63118833 original size:24 final size:24
Alignment explanation
Indices: 63118806--63118890 Score: 152
Period size: 24 Copynumber: 3.5 Consensus size: 24
63118796 TATTATGTTA
63118806 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCCATAGTAAATC
*
63118830 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCCATAGTAAATC
63118854 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCCATAGTAAATC
*
63118878 ACACACATAGTGC
1 GCACACATAGTGC
63118891 ATTTGAGATT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAATC
Found at i:63120582 original size:44 final size:44
Alignment explanation
Indices: 63120516--63120599 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
63120506 TCCTTAACCG
* * *
63120516 TCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTTCTA
1 TCAATTCCTCCTTAAATACCATGGTA-CAACCATGGACTTTTCTA
* *
63120560 TCAATTCTTCCTTAATTACCATGGTACAACCATGGACTTT
1 TCAATTCCTCCTTAAATACCATGGTACAACCATGGACTTT
63120600 GAGATATCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 32 0.94
ACGTcount: A:0.27, C:0.24, G:0.11, T:0.38
Consensus pattern (44 bp):
TCAATTCCTCCTTAAATACCATGGTACAACCATGGACTTTTCTA
Found at i:63126702 original size:13 final size:13
Alignment explanation
Indices: 63126684--63126708 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63126674 TCAAACGATA
63126684 AAATTTTCACACG
1 AAATTTTCACACG
63126697 AAATTTTCACAC
1 AAATTTTCACAC
63126709 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:63129039 original size:93 final size:93
Alignment explanation
Indices: 63128927--63129098 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63128917 CGCCCATAAG
* *
63128927 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63128992 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
63129020 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
63129085 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
63129099 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:63129095 original size:46 final size:46
Alignment explanation
Indices: 63128920--63129095 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
63128910 TGTAACCCGC
* * *
63128920 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
63128966 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
63129016 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
63129059 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
63129096 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:63133584 original size:92 final size:92
Alignment explanation
Indices: 63133472--63133641 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 92
63133462 GCCCATAAGC
* *
63133472 GAACTTGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTGGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
63133536 ACGAGCTCGGATGCCTAGTTACTCTCAT
65 ACGAGCTCGGATGCCTAGTTACTCTCAT
* *
63133564 GAACTGGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTGGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
63133629 CGAGTTCGGATGC
66 CGAGCTCGGATGC
63133642 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 2 0.03
92 70 0.97
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTGGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACTCTCAT
Found at i:63133638 original size:46 final size:45
Alignment explanation
Indices: 63133464--63133637 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
63133454 TGTAACCCGC
* * *
63133464 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
63133510 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* * *
63133556 ACTC-TCA-TGAACTGGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 -C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
63133602 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
63133638 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 5 0.05
46 87 0.82
47 3 0.03
48 5 0.05
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:63133657 original size:46 final size:45
Alignment explanation
Indices: 63133515--63133657 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 45
63133505 CGCATCCATA
* * * **
63133515 AGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTA-GTTACTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCAT-C-CT
* *
63133561 CA-TGAACTGGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
63133606 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
63133653 AGTGA
1 AGTGA
63133658 CATGTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 3 0.04
46 62 0.81
47 2 0.03
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:63153287 original size:27 final size:26
Alignment explanation
Indices: 63153247--63153347 Score: 114
Period size: 27 Copynumber: 3.7 Consensus size: 26
63153237 AGCATGGCTG
*
63153247 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGTCA
*
63153273 CCAGATACAAATAATCGTGGCAGA-TCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGT-CA
*
63153301 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGTCA
*
63153328 CCAGATCAGATAATTGTGGC
1 CCAGAACAGATAA-TGTGGC
63153348 GTAGCCACCA
Statistics
Matches: 64, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
26 6 0.09
27 42 0.66
28 16 0.25
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGTCA
Found at i:63153356 original size:54 final size:54
Alignment explanation
Indices: 63153247--63153357 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
63153237 AGCATGGCTG
* *
63153247 CCAGAACAGATAATGTGACAGAGTCACCAGATACAAATAATCGTGGCAGATCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
* * *
63153301 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGC-GTAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAAATAATCGTGGCAG-AGCCA
63153355 CCA
1 CCA
63153358 AGACGCTTCC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 1 0.02
54 31 0.62
55 18 0.36
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAAATAATCGTGGCAGAGCCA
Found at i:63161145 original size:27 final size:27
Alignment explanation
Indices: 63161114--63161218 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
63161104 CTGCCAGAAT
*
63161114 AGATAATGTGACAGAGCCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
*
63161141 AGATAATCGTGGCAAAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
63161168 AGATATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
*
63161195 AGATAATTCTGGC-GTAGCCACCAG
1 AGATAA-TGTGGCAG-AGCCACCAG
63161219 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
26 2 0.03
27 50 0.72
28 17 0.25
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:63161198 original size:54 final size:54
Alignment explanation
Indices: 63161107--63161218 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
63161097 AGCATGGCTG
*
63161107 CCAGAATAGATAATGTGACAGAGCCACCAGATACAGATAA-TCGTGGCAAAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATTC-TGGCAAAGCCA
* **
63161161 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTCTGGCGTAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATTCTGGCAAAGCCA
63161215 CCAG
1 CCAG
63161219 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
54 31 0.60
55 21 0.40
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATTCTGGCAAAGCCA
Found at i:63166952 original size:22 final size:21
Alignment explanation
Indices: 63166927--63166973 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
63166917 TAGAAAGAAT
63166927 AAAATAATGAAAAAAAAAAAGG
1 AAAAT-ATGAAAAAAAAAAAGG
** *
63166949 AAAATATGATGAAAACAAAGG
1 AAAATATGAAAAAAAAAAAGG
63166970 AAAA
1 AAAA
63166974 AAAAAGTGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.72, C:0.02, G:0.15, T:0.11
Consensus pattern (21 bp):
AAAATATGAAAAAAAAAAAGG
Found at i:63167213 original size:7 final size:7
Alignment explanation
Indices: 63167201--63167225 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
63167191 GTTGTCTTCT
63167201 TGTTTGA
1 TGTTTGA
63167208 TGTTTGA
1 TGTTTGA
63167215 TGTTTGA
1 TGTTTGA
63167222 TGTT
1 TGTT
63167226 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:63168155 original size:27 final size:28
Alignment explanation
Indices: 63168099--63168168 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
63168089 AAATTTGTAC
*
63168099 AGCACTAAGTGTGTGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
63168127 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
63168154 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63168169 GACTCACTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 23 0.61
28 15 0.39
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:63175076 original size:7 final size:7
Alignment explanation
Indices: 63175064--63175088 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
63175054 TCTTCTTGTT
63175064 TGTTTGA
1 TGTTTGA
63175071 TGTTTGA
1 TGTTTGA
63175078 TGTTTGA
1 TGTTTGA
63175085 TGTT
1 TGTT
63175089 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:63176016 original size:27 final size:28
Alignment explanation
Indices: 63175960--63176029 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
63175950 AAATTTGTAC
63175960 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
63175988 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
63176015 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
63176030 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:63197312 original size:68 final size:66
Alignment explanation
Indices: 63197240--63197389 Score: 169
Period size: 67 Copynumber: 2.2 Consensus size: 66
63197230 CATCATGTGT
* * * *
63197240 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
63197303 TGTAG
62 TGTAG
** * *
63197308 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
63197373 AG
65 AG
63197375 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
63197390 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 24 0.34
65 3 0.04
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.21
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:63197345 original size:64 final size:64
Alignment explanation
Indices: 63197264--63197447 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
63197254 AGACATTATG
* * *
63197264 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
63197328 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63197393 AA
63 AA
* * *
63197395 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
63197448 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 31 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63206165 original size:40 final size:40
Alignment explanation
Indices: 63206038--63206167 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
63206028 ATGCTGGAAA
* *
63206038 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
63206078 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63206118 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63206158 TTATATCCGG
1 TTATATCCGG
63206168 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63214228 original size:40 final size:40
Alignment explanation
Indices: 63214101--63214230 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
63214091 ATGCTGGAAA
* *
63214101 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
63214141 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
63214181 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
63214221 TTATATCCGG
1 TTATATCCGG
63214231 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:63226720 original size:40 final size:40
Alignment explanation
Indices: 63226673--63226832 Score: 196
Period size: 40 Copynumber: 4.0 Consensus size: 40
63226663 CTTGCACAAG
* *
63226673 GCCTTTGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTTGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
63226713 GCCTTTGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTTGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
63226753 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTTGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
63226793 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAA
1 GCCTTTGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAA
63226833 AACCTTCGGG
Statistics
Matches: 103, Mismatches: 14, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 93 0.90
41 9 0.09
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTTGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:63226794 original size:80 final size:81
Alignment explanation
Indices: 63226673--63226857 Score: 205
Period size: 80 Copynumber: 2.3 Consensus size: 81
63226663 CTTGCACAAG
* * * *
63226673 GCCTTTGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGCCTTTGGGA-CTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCC-TTCGGATCTTAGCCCGGATAT
* *
63226737 AGTC-GCTAGCACAAAT
65 AGTCACCTAGCACAAAA
* * * *
63226753 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGATCTTAGCCCGGATAT
63226817 AGTCACCTAGCACAAAA
65 AGTCACCTAGCACAAAA
* * * *
63226834 ACCTTCGGGACTTAGTCTGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
63226858 CATTCGAATA
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
79 6 0.07
80 52 0.59
81 30 0.34
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (81 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGCCCGGATATA
GTCACCTAGCACAAAA
Found at i:63235767 original size:33 final size:33
Alignment explanation
Indices: 63235730--63235842 Score: 86
Period size: 33 Copynumber: 3.3 Consensus size: 33
63235720 GTAACTAAAT
63235730 TGTGTTTATTTTATGCTTGAATTGAGTGTGGTA
1 TGTGTTTATTTTATGCTTGAATTGAGTGTGGTA
** ** * **
63235763 TGTGTTTATATGAATTATAT-AAGTTCA-TGTAACTAAA
1 TGTGTTTAT-TTTATGCT-TGAA-TTGAGTGT-GGT--A
63235800 TTGTGTTTATTTTATGCTTGAATTGAGTGTGGTA
1 -TGTGTTTATTTTATGCTTGAATTGAGTGTGGTA
63235834 TGTGTTTAT
1 TGTGTTTAT
63235843 ATGAATTATA
Statistics
Matches: 57, Mismatches: 14, Indels: 18
0.64 0.16 0.20
Matches are distributed among these distances:
33 18 0.32
34 10 0.18
35 5 0.09
36 5 0.09
37 10 0.18
38 9 0.16
ACGTcount: A:0.24, C:0.04, G:0.22, T:0.50
Consensus pattern (33 bp):
TGTGTTTATTTTATGCTTGAATTGAGTGTGGTA
Found at i:63235812 original size:71 final size:71
Alignment explanation
Indices: 63235711--63235855 Score: 290
Period size: 71 Copynumber: 2.0 Consensus size: 71
63235701 TTTATTGAGG
63235711 TAAGTTCATGTAACTAAATTGTGTTTATTTTATGCTTGAATTGAGTGTGGTATGTGTTTATATGA
1 TAAGTTCATGTAACTAAATTGTGTTTATTTTATGCTTGAATTGAGTGTGGTATGTGTTTATATGA
63235776 ATTATA
66 ATTATA
63235782 TAAGTTCATGTAACTAAATTGTGTTTATTTTATGCTTGAATTGAGTGTGGTATGTGTTTATATGA
1 TAAGTTCATGTAACTAAATTGTGTTTATTTTATGCTTGAATTGAGTGTGGTATGTGTTTATATGA
63235847 ATTATA
66 ATTATA
63235853 TAA
1 TAA
63235856 ATGTTATAAA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.29, C:0.04, G:0.19, T:0.48
Consensus pattern (71 bp):
TAAGTTCATGTAACTAAATTGTGTTTATTTTATGCTTGAATTGAGTGTGGTATGTGTTTATATGA
ATTATA
Found at i:63237817 original size:2 final size:2
Alignment explanation
Indices: 63237810--63237837 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
63237800 CGGCTCTAGC
63237810 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63237838 GTTTGCACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63238645 original size:40 final size:40
Alignment explanation
Indices: 63238590--63238737 Score: 242
Period size: 40 Copynumber: 3.7 Consensus size: 40
63238580 TGAATGATAC
*
63238590 CCGGGTTAAGACTCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
63238630 CCGGGTTAAGACTCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
63238670 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
63238710 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGTTAAGACCCGAAGGCATTTGTGC
63238738 TTGTGGTTAT
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 101 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:63238727 original size:80 final size:80
Alignment explanation
Indices: 63238590--63238757 Score: 257
Period size: 80 Copynumber: 2.1 Consensus size: 80
63238580 TGAATGATAC
* * * * *
63238590 CCGGGTTAAGACTCGAAGGCATTTGTGCGAGTTGCTATATCCGGGTTAAGACTCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTG
*
63238655 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
63238670 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTG
**
63238735 TGCTTGTGGTTATAT
66 TGCGAGTGGTTATAT
63238750 CC-GGCTAA
1 CCGGGCTAA
63238758 ATTCCGAAGA
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 6 0.08
80 74 0.93
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTG
TGCGAGTGGTTATAT
Found at i:63241318 original size:23 final size:24
Alignment explanation
Indices: 63241292--63241336 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
63241282 CAGTACAATT
63241292 TTATA-TAATGAAATTCACAAGAC
1 TTATACTAATGAAATTCACAAGAC
* *
63241315 TTATACTAATTAAGTTCACAAG
1 TTATACTAATGAAATTCACAAG
63241337 CGTTAAACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.33
Consensus pattern (24 bp):
TTATACTAATGAAATTCACAAGAC
Found at i:63242512 original size:41 final size:41
Alignment explanation
Indices: 63242442--63242698 Score: 162
Period size: 41 Copynumber: 6.3 Consensus size: 41
63242432 AAACGCCGCA
* * * *
63242442 AAAAACTGAGCAATAGAGGCATTTTTGGTCCAAACCCCGCT
1 AAAAACTGAGCAATAGAGGCATGTCTGGTCCAAACACCACT
** *
63242483 AAAATTTGAGCAATAGCGGCATGTCTGGTCCAAACACCACT
1 AAAAACTGAGCAATAGAGGCATGTCTGGTCCAAACACCACT
* * * * * *
63242524 AAAAACTGAGCAATAGTGGCCT-TTTAGGTACAAACGCCATT
1 AAAAACTGAGCAATAGAGGCATGTCT-GGTCCAAACACCACT
* * * * *
63242565 AAAAACTGAGCAATAGCA-GCGTTTTTGGTCCAAACGCCATT
1 AAAAACTGAGCAATAG-AGGCATGTCTGGTCCAAACACCACT
* * * ** * *
63242606 CAAAACTAAGCAATAGCGGTGTTTTTGGTCCAAACA-CAGCT
1 AAAAACTGAGCAATAGAGGCATGTCTGGTCCAAACACCA-CT
* * * * * * *
63242647 AAAAACTAAGCAATAGTGGCGT-TTTTGTCCAAACGCCACA
1 AAAAACTGAGCAATAGAGGCATGTCTGGTCCAAACACCACT
*
63242687 AAAAATTGAGCA
1 AAAAACTGAGCA
63242699 GCCATTTTCG
Statistics
Matches: 178, Mismatches: 32, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
40 26 0.15
41 149 0.84
42 3 0.02
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (41 bp):
AAAAACTGAGCAATAGAGGCATGTCTGGTCCAAACACCACT
Found at i:63242651 original size:123 final size:122
Alignment explanation
Indices: 63242432--63242698 Score: 315
Period size: 123 Copynumber: 2.2 Consensus size: 122
63242422 CGTTTGCAAT
* * * *
63242432 AAACGCCGCAAAAAACTGAGCAATAGAGGCATTTTTGGTCCAAACCCCGCTAAAATTTGAGCAAT
1 AAACGCCACAAAAAACTGAGCAATAGAGGCATTTTTGGTCCAAACCCCACTAAAATCTAAGCAAT
*
63242497 AGCGGCATGTCTGGTCCAAACACCACTAAAAACTGAGCAATAGTGGCCTTTTAGGTAC
66 AGCGGCATGTCTGGTCCAAACACCACTAAAAACTAAGCAATAGTGGCCTTTT-GGTAC
** * * *
63242555 AAACGCCATTAAAAACTGAGCAATAGCA-GCGTTTTTGGTCCAAACGCCATTCAAAA-CTAAGCA
1 AAACGCCACAAAAAACTGAGCAATAG-AGGCATTTTTGGTCCAAACCCCACT-AAAATCTAAGCA
** * * * * *
63242618 ATAGCGGTGTTTTTGGTCCAAACA-CAGCTAAAAACTAAGCAATAGTGGCGTTTTTGTCC
64 ATAGCGGCATGTCTGGTCCAAACACCA-CTAAAAACTAAGCAATAGTGGCCTTTTGGTAC
*
63242677 AAACGCCACAAAAAATTGAGCA
1 AAACGCCACAAAAAACTGAGCA
63242699 GCCATTTTCG
Statistics
Matches: 121, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
122 24 0.20
123 92 0.76
124 5 0.04
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (122 bp):
AAACGCCACAAAAAACTGAGCAATAGAGGCATTTTTGGTCCAAACCCCACTAAAATCTAAGCAAT
AGCGGCATGTCTGGTCCAAACACCACTAAAAACTAAGCAATAGTGGCCTTTTGGTAC
Found at i:63242669 original size:82 final size:82
Alignment explanation
Indices: 63242432--63242698 Score: 277
Period size: 82 Copynumber: 3.3 Consensus size: 82
63242422 CGTTTGCAAT
* * * **
63242432 AAACGCCGCAAAAAACTGAGCAATAGAGGCATTTTTGGTCCAAACCCCGCTAAAATTTGAGCAAT
1 AAACGCCACTAAAAACTGAGCAATAGAGGCATTTTTGGTCCAAACCCAGCTAAAAACTGAGCAAT
* * *
63242497 AGCGGCATGTCTGGTCC
66 AGCGGCGTTTTTGGTCC
* * * * * *
63242514 AAACACCACTAAAAACTGAGCAATAGTGGCCTTTTAGGTACAAACGCCA-TTAAAAACTGAGCAA
1 AAACGCCACTAAAAACTGAGCAATAGAGGCATTTTTGGTCCAAAC-CCAGCTAAAAACTGAGCAA
*
63242578 TAGCAGCGTTTTTGGTCC
65 TAGCGGCGTTTTTGGTCC
* * * * ** * *
63242596 AAACGCCATTCAAAACTAAGCAATAGCGGTGTTTTTGGTCCAAACACAGCTAAAAACTAAGCAAT
1 AAACGCCACTAAAAACTGAGCAATAGAGGCATTTTTGGTCCAAACCCAGCTAAAAACTGAGCAAT
*
63242661 AGTGGCGTTTTT-GTCC
66 AGCGGCGTTTTTGGTCC
* *
63242677 AAACGCCACAAAAAATTGAGCA
1 AAACGCCACTAAAAACTGAGCA
63242699 GCCATTTTCG
Statistics
Matches: 149, Mismatches: 34, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
81 23 0.15
82 124 0.83
83 2 0.01
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (82 bp):
AAACGCCACTAAAAACTGAGCAATAGAGGCATTTTTGGTCCAAACCCAGCTAAAAACTGAGCAAT
AGCGGCGTTTTTGGTCC
Found at i:63247967 original size:27 final size:26
Alignment explanation
Indices: 63247919--63247970 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
63247909 GCGAGGCTGC
*
63247919 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
63247945 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
63247971 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:63248597 original size:26 final size:27
Alignment explanation
Indices: 63248568--63248629 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
63248558 TCACACAAGT
*
63248568 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
63248594 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
*
63248621 TAGTAATTT
1 TAGTCATTT
63248630 TACCCCACAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.29
27 22 0.71
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:63248655 original size:27 final size:27
Alignment explanation
Indices: 63248624--63248844 Score: 169
Period size: 27 Copynumber: 8.2 Consensus size: 27
63248614 GGCAAAATAG
* *
63248624 TAATTTTACCCCACAAGGGTATCTCAGA
1 TAATTCTACCCTACAAGGGTATCTC-GA
* * *
63248652 -AATTCTGCCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATCTCGA
* * *
63248678 TAATTCTACCTTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATCTCGA
* * * * *
63248705 TAATTCTATCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATCTCGA
*
63248732 TAATTCTACCCTACAAGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATCTCGA
* * * *
63248758 GTAATTCTATCCTATAGGGGTATTTC-A
1 -TAATTCTACCCTACAAGGGTATCTCGA
* * *
63248785 GTAATTCTACCCTACAGGGGTATTTCAA
1 -TAATTCTACCCTACAAGGGTATCTCGA
* * * *
63248813 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATCTCGA
63248840 TAATT
1 TAATT
63248845 TACAACTTAT
Statistics
Matches: 165, Mismatches: 25, Indels: 7
0.84 0.13 0.04
Matches are distributed among these distances:
26 2 0.01
27 162 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATCTCGA
Found at i:63248682 original size:54 final size:54
Alignment explanation
Indices: 63248624--63248844 Score: 266
Period size: 54 Copynumber: 4.1 Consensus size: 54
63248614 GGCAAAATAG
* * * *
63248624 TAATTTTACCCCACAAGGGTATCTCAGAAATTCTGCCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCAGAAATTCTACCCTACAGGGGTATTTCGA
* * * * * *
63248678 TAATTCTACCTTACAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCAGAAATTCTACCCTACAGGGGTATTTCGA
* * *
63248732 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTATCCTATAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCAGAAATTCTACCCTACAGGGGTATTTCGA
* * *
63248785 GTAATTCTACCCTACAGGGGTATTTCA-ATAATTCTACCCTATAGGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCAGA-AATTCTACCCTACAGGGGTATTTCGA
63248840 TAATT
1 TAATT
63248845 TACAACTTAT
Statistics
Matches: 145, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
54 145 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (54 bp):
TAATTCTACCCTACAAGGGTATTTCAGAAATTCTACCCTACAGGGGTATTTCGA
Found at i:63248745 original size:81 final size:81
Alignment explanation
Indices: 63248622--63248844 Score: 263
Period size: 81 Copynumber: 2.8 Consensus size: 81
63248612 GGGGCAAAAT
* * * * *
63248622 AGTAATTTTACCCCACAAGGGTATCTCAGA-AATTCTGCCCTACAGGGGTATTTCGATAATTCTA
1 AGTAATTCTACCCTACAGGGGTATTTCA-ATAATTCTACCCTACAGGGGTATTTCGATAATTCTA
63248686 -CCTTACAAGGGTATTTC
65 TCC-TACAAGGGTATTTC
* * *** *
63248703 GGTAATTCTATCCTACAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTC-AGTAATTCTA
1 AGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGA-TAATTCTA
* *
63248767 TCCTATAGGGGTATTTC
65 TCCTACAAGGGTATTTC
* *
63248784 AGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGGTAATT
1 AGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGATAATT
63248845 TACAACTTAT
Statistics
Matches: 117, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
80 1 0.01
81 114 0.97
82 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (81 bp):
AGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGATAATTCTAT
CCTACAAGGGTATTTC
Found at i:63250370 original size:27 final size:27
Alignment explanation
Indices: 63250327--63250554 Score: 339
Period size: 27 Copynumber: 8.4 Consensus size: 27
63250317 GAATCGTTAC
63250327 GTGATAAAATGACGATTTTGCCCTTAT
1 GTGATAAAATGACGATTTTGCCCTTAT
* *
63250354 GCGATAAAATGATGATTTTGCCCTTAT
1 GTGATAAAATGACGATTTTGCCCTTAT
* *
63250381 GTGATAAAATGACGATTTTGCTCTCAT
1 GTGATAAAATGACGATTTTGCCCTTAT
* * * *
63250408 GTGATAAAATGAAGATTTTTCTCTCAT
1 GTGATAAAATGACGATTTTGCCCTTAT
* * *
63250435 GTGATAAAATGACAATTTTTCCCATAT
1 GTGATAAAATGACGATTTTGCCCTTAT
*
63250462 GTGATAAAATGACGATTTCGCCCTTAT
1 GTGATAAAATGACGATTTTGCCCTTAT
63250489 GTGATAAAATGACGATTTTGCCCTTAT
1 GTGATAAAATGACGATTTTGCCCTTAT
*
63250516 GTGATAAAATGACTATTTTGCCCTTAT
1 GTGATAAAATGACGATTTTGCCCTTAT
63250543 GTGATAAAATGA
1 GTGATAAAATGA
63250555 TCGAAATACC
Statistics
Matches: 182, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 182 1.00
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (27 bp):
GTGATAAAATGACGATTTTGCCCTTAT
Found at i:63250587 original size:26 final size:26
Alignment explanation
Indices: 63250547--63250644 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 26
63250537 CCTTATGTGA
*
63250547 TAAAATGATCGAAATACCCTCATAGG
1 TAAAATGACCGAAATACCCTCATAGG
* *
63250573 TAAAATGACCAAAATACCCCTACA-GGG
1 TAAAATGACCGAAATA-CCCT-CATAGG
* *
63250600 TAGAATGACCGAAATACCACT-GTAGAG
1 TAAAATGACCGAAATACC-CTCATAG-G
* *
63250627 TAAAATGACTGTAATACC
1 TAAAATGACCGAAATACC
63250645 TCGGTAAGGT
Statistics
Matches: 57, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
26 17 0.30
27 38 0.67
28 2 0.04
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.20
Consensus pattern (26 bp):
TAAAATGACCGAAATACCCTCATAGG
Done.