Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 207 of 425
Found at i:63251061 original size:18 final size:18
Alignment explanation
Indices: 63251005--63251063 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
63250995 TCTGCTTGCA
*
63251005 TACTGCACTGATTACTGT
1 TACTGCACTGATAACTGT
* * * *
63251023 TTCTGCATTGATCATTGT
1 TACTGCACTGATAACTGT
*
63251041 TACTGCACTGATAACTAT
1 TACTGCACTGATAACTGT
63251059 TACTG
1 TACTG
63251064 AAATGGGCTA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (18 bp):
TACTGCACTGATAACTGT
Found at i:63252154 original size:9 final size:9
Alignment explanation
Indices: 63252140--63252204 Score: 78
Period size: 9 Copynumber: 7.0 Consensus size: 9
63252130 CATATCATAT
63252140 CATAACTTA
1 CATAACTTA
63252149 CATAACTTA
1 CATAACTTA
63252158 CATAACTTA
1 CATAACTTA
63252167 -ATAACTTA
1 CATAACTTA
* *
63252175 TATATATCATA
1 CATA-A-CTTA
63252186 TCATAACTTA
1 -CATAACTTA
63252196 CATAACTTA
1 CATAACTTA
63252205 ATTATACTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
8 8 0.16
9 30 0.61
10 4 0.08
11 4 0.08
12 3 0.06
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:63255766 original size:29 final size:28
Alignment explanation
Indices: 63255720--63255775 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
63255710 CTAATGAGAT
63255720 TGCAAATTAGGGGCT-AAATAGTGAAATG
1 TGCAAATTAGGGGCTAAAAT-GTGAAATG
*
63255748 TGCAAATTTAGGGGTTAAAATGTGAAAT
1 TGCAAA-TTAGGGGCTAAAATGTGAAAT
63255776 AAATGAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 6 0.24
29 15 0.60
30 4 0.16
ACGTcount: A:0.39, C:0.05, G:0.27, T:0.29
Consensus pattern (28 bp):
TGCAAATTAGGGGCTAAAATGTGAAATG
Found at i:63259835 original size:28 final size:28
Alignment explanation
Indices: 63259801--63259982 Score: 125
Period size: 28 Copynumber: 6.5 Consensus size: 28
63259791 ACTTGATATT
63259801 TCACACACTAAGTGCCATACCCAACGTC
1 TCACACACTAAGTGCCATACCCAACGTC
** ** *
63259829 TTGCACACTAAGTGCCATATTCAATGTC
1 TCACACACTAAGTGCCATACCCAACGTC
* *
63259857 TCACACACTAAGTGCCATGATCGATA--TC
1 TCACACACTAAGTGCCAT-ACCCA-ACGTC
* * * *** *
63259885 TCACGCACTAAGTGTCACAATAAATGTC
1 TCACACACTAAGTGCCATACCCAACGTC
* * ** *
63259913 TCACACATTAAGTGTCATAATCAATGTC
1 TCACACACTAAGTGCCATACCCAACGTC
** *
63259941 TCACACACTAAGTGCCATAATCAATGTC
1 TCACACACTAAGTGCCATACCCAACGTC
*
63259969 TCGCACACTAAGTG
1 TCACACACTAAGTG
63259983 TCGTACATAG
Statistics
Matches: 128, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 2 0.02
28 121 0.95
29 3 0.02
30 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
TCACACACTAAGTGCCATACCCAACGTC
Found at i:63259984 original size:56 final size:56
Alignment explanation
Indices: 63259801--63259982 Score: 220
Period size: 56 Copynumber: 3.2 Consensus size: 56
63259791 ACTTGATATT
** * ** *
63259801 TCACACACTAAGTGCCATACCCAACGTCTTGCACACTAAGTGCCATATTCAATGTC
1 TCACACACTAAGTGCCATAATCAATGTCTCACACACTAAGTGCCATAATCAATGTC
* * * * * * *
63259857 TCACACACTAAGTGCCATGATCGATATCTCACGCACTAAGTGTCACAATAAATGTC
1 TCACACACTAAGTGCCATAATCAATGTCTCACACACTAAGTGCCATAATCAATGTC
* *
63259913 TCACACATTAAGTGTCATAATCAATGTCTCACACACTAAGTGCCATAATCAATGTC
1 TCACACACTAAGTGCCATAATCAATGTCTCACACACTAAGTGCCATAATCAATGTC
*
63259969 TCGCACACTAAGTG
1 TCACACACTAAGTG
63259983 TCGTACATAG
Statistics
Matches: 102, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
56 102 1.00
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (56 bp):
TCACACACTAAGTGCCATAATCAATGTCTCACACACTAAGTGCCATAATCAATGTC
Found at i:63263274 original size:13 final size:13
Alignment explanation
Indices: 63263256--63263282 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63263246 ATTTTAAAAG
63263256 CTTGAATTTTGAA
1 CTTGAATTTTGAA
63263269 CTTGAATTTTGAA
1 CTTGAATTTTGAA
63263282 C
1 C
63263283 CTATGGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (13 bp):
CTTGAATTTTGAA
Found at i:63264003 original size:20 final size:21
Alignment explanation
Indices: 63263974--63264022 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
63263964 ATATTTTATA
*
63263974 ATTA-TTTAATTAGATAA-AT
1 ATTATTTTAATGAGATAATAT
* *
63263993 ATTATTTTAATGATATAATTT
1 ATTATTTTAATGAGATAATAT
63264014 ATTATTTTA
1 ATTATTTTA
63264023 TTATTATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 4 0.16
20 11 0.44
21 10 0.40
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (21 bp):
ATTATTTTAATGAGATAATAT
Found at i:63264442 original size:10 final size:10
Alignment explanation
Indices: 63264427--63264466 Score: 62
Period size: 10 Copynumber: 3.8 Consensus size: 10
63264417 TATGTTAGTG
63264427 AAGAGAAAAT
1 AAGAGAAAAT
63264437 AAGAGAAAAGT
1 AAGAGAAAA-T
63264448 GAAGAGAAAAT
1 -AAGAGAAAAT
63264459 AAGAGAAA
1 AAGAGAAA
63264467 GTGATGAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
10 17 0.61
11 2 0.07
12 9 0.32
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (10 bp):
AAGAGAAAAT
Found at i:63264451 original size:22 final size:21
Alignment explanation
Indices: 63264423--63264477 Score: 92
Period size: 22 Copynumber: 2.6 Consensus size: 21
63264413 TTGATATGTT
63264423 AGTGAAGAGAAAATAAGAGAAA
1 AGTGAAGAGAAAATAAGAG-AA
63264445 AGTGAAGAGAAAATAAGAGAA
1 AGTGAAGAGAAAATAAGAGAA
*
63264466 AGTGATGAGAAA
1 AGTGAAGAGAAA
63264478 TAGTGTAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 13 0.41
22 19 0.59
ACGTcount: A:0.60, C:0.00, G:0.29, T:0.11
Consensus pattern (21 bp):
AGTGAAGAGAAAATAAGAGAA
Found at i:63264477 original size:11 final size:11
Alignment explanation
Indices: 63264423--63264477 Score: 60
Period size: 11 Copynumber: 5.1 Consensus size: 11
63264413 TTGATATGTT
63264423 AGTGAAGAGAA
1 AGTGAAGAGAA
*
63264434 AAT-AAGAGAAA
1 AGTGAAGAG-AA
63264445 AGTGAAGAGAA
1 AGTGAAGAGAA
*
63264456 AAT-AAGAGAA
1 AGTGAAGAGAA
*
63264466 AGTGATGAGAA
1 AGTGAAGAGAA
63264477 A
1 A
63264478 TAGTGTAGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
10 14 0.39
11 17 0.47
12 5 0.14
ACGTcount: A:0.60, C:0.00, G:0.29, T:0.11
Consensus pattern (11 bp):
AGTGAAGAGAA
Found at i:63265943 original size:46 final size:46
Alignment explanation
Indices: 63265883--63266039 Score: 151
Period size: 46 Copynumber: 3.4 Consensus size: 46
63265873 ATGAAATGTG
* * *
63265883 TAAGACCATGGTTGAAAAATACCGTGGTAGGATGACGGTAAATGAA
1 TAAGACCATGGTTGAAAGATACCGTGGAAAGATGACGGTAAATGAA
* * *
63265929 TAAGACCATGGTTGAAAGATACTGTGGCAACG-TGAC-ATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCGTGG-AAAGATGACGGT-AAATGAA
* * * *
63265975 AAAGACCATGGTTGAAAGATATCC-TGGCAACATGACAGG-AAATGAG
1 TAAGACCATGGTTGAAAGATA-CCGTGGAAAGATGAC-GGTAAATGAA
*
63266021 TAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGA
63266040 CACTATGTGT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
45 2 0.02
46 86 0.95
47 3 0.03
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.20
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCGTGGAAAGATGACGGTAAATGAA
Found at i:63266937 original size:20 final size:20
Alignment explanation
Indices: 63266912--63266957 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
63266902 ATTGGGCCTT
63266912 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
63266932 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
63266951 GCCCATA
1 GCCCATA
63266958 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:63266966 original size:19 final size:20
Alignment explanation
Indices: 63266924--63266967 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
63266914 CCATATTAAC
** *
63266924 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
63266944 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
63266963 ACAGT
1 ACAGT
63266968 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:63268205 original size:27 final size:27
Alignment explanation
Indices: 63268175--63268462 Score: 230
Period size: 27 Copynumber: 10.7 Consensus size: 27
63268165 TTAGTTTACC
63268175 AAATTACCAAAATACCCCTTGTTTGTA
1 AAATTACCAAAATACCCCTTGTTTGTA
* * * *
63268202 AAATTACTAAAACACCCTTTGTTTTTA
1 AAATTACCAAAATACCCCTTGTTTGTA
*
63268229 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTTGTTTGTA
*
63268256 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTTGTTTGTA
** *
63268283 AAATTGTCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTTGTTTGTA
* *
63268310 AAATTACCTAAATA-CCCTCGATTTGTA
1 AAATTACCAAAATACCCCTTG-TTTGTA
* * *
63268337 AAATTACTAAAATGCCCCTATAG--GGTA
1 AAATTACCAAAATACCCCT-T-GTTTGTA
* * **
63268364 GAATTACTAAAATACCCC-TGTAGGGTA
1 AAATTACCAAAATACCCCTTGT-TTGTA
* * **
63268391 GAATTACCGAAATACCCC-TGTAGGATA
1 AAATTACCAAAATACCCCTTGTTTG-TA
* * **
63268418 GAATTACCGAAATA-CCC-TGTAGGGTA
1 AAATTACCAAAATACCCCTTGT-TTGTA
*
63268444 GAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
63268463 GTAAGGTAGA
Statistics
Matches: 221, Mismatches: 29, Indels: 21
0.82 0.11 0.08
Matches are distributed among these distances:
24 1 0.00
25 1 0.00
26 28 0.13
27 186 0.84
28 4 0.02
30 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTTGTTTGTA
Found at i:63268470 original size:27 final size:27
Alignment explanation
Indices: 63268346--63268621 Score: 410
Period size: 27 Copynumber: 10.3 Consensus size: 27
63268336 AAAATTACTA
* * **
63268346 AAATGCCCCTATAGGGTAGAATTACTA
1 AAATACCCCTGTAGGGTAGAATTACCG
63268373 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
63268400 AAATACCCCTGTAGGATAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
63268427 AAATA-CCCTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
63268453 AAATACCCCTGTAAGGTAGAATTTCTG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
63268480 AAATACCCCAGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
63268507 AAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
63268534 TAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
63268561 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
63268588 AAATACCCCTGTAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
63268615 AGATACC
1 AAATACC
63268622 TTTGGTAAAA
Statistics
Matches: 224, Mismatches: 24, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
26 24 0.11
27 200 0.89
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.24
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:63269115 original size:22 final size:22
Alignment explanation
Indices: 63269063--63269127 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
63269053 TTAAAGCCTT
*
63269063 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
63269085 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
63269107 CTGATTATGGCTATGTGCCAA
1 CTGATTATGGCTTTGTGCCAA
63269128 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:63269316 original size:27 final size:27
Alignment explanation
Indices: 63269286--63269387 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
63269276 ATTCTGTTAA
* *
63269286 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
63269313 GTGGCTATGCTACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
63269340 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
63269367 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
63269388 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:63269550 original size:6 final size:6
Alignment explanation
Indices: 63269519--63269606 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
63269509 CTGCATTCAC
* *
63269519 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
63269568 -TCACCTA ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
63269607 AATGTTTCTT
Statistics
Matches: 66, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
5 4 0.06
6 54 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:63269557 original size:31 final size:31
Alignment explanation
Indices: 63269519--63269597 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
63269509 CTGCATTCAC
* * * *
63269519 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
*
63269550 ATTCTGATTCTGATTCTGTCACCTAATTCTA
1 ATTCTGATTCTGATTCTGTCACCTAATACTA
63269581 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
63269598 AGTTCTGATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTA
Found at i:63270070 original size:20 final size:20
Alignment explanation
Indices: 63270001--63270070 Score: 52
Period size: 20 Copynumber: 3.2 Consensus size: 20
63269991 GATCCAACAT
63270001 ATCACCAACATATATTCACA
1 ATCACCAACATATATTCACA
* *
63270021 ATCACAATCACAGTCAAGTCATTCA-T
1 ATCACCA--ACA-T--A-T-ATTCACA
63270047 ATCACCAACATATATTCACA
1 ATCACCAACATATATTCACA
63270067 ATCA
1 ATCA
63270071 AATCCGTCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 16
0.66 0.07 0.28
Matches are distributed among these distances:
19 5 0.13
20 11 0.29
21 1 0.03
22 3 0.08
23 2 0.05
24 3 0.08
25 1 0.03
26 7 0.18
27 5 0.13
ACGTcount: A:0.43, C:0.29, G:0.03, T:0.26
Consensus pattern (20 bp):
ATCACCAACATATATTCACA
Found at i:63270238 original size:27 final size:27
Alignment explanation
Indices: 63270168--63270533 Score: 436
Period size: 27 Copynumber: 13.6 Consensus size: 27
63270158 TGCCCCACGA
* *
63270168 GGGTATCTCGGTAATTCTACCCTACA-
1 GGGTATTTCGATAATTCTACCCTACAG
* *
63270194 GGGTATTTC-AGTATTTCTACCCTACAA
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
63270221 GTGTATTTCGATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
63270248 GGGTATTTC-AGTAATTCTACCCTATAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
63270275 GGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
63270302 GGGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
* * *
63270329 GGGTATTTCGGTAATTTTACCTTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
63270356 GGGTATTTCAATCATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
63270383 GGGTATTTCGGTAATTCTACCATACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
63270410 GAGTATTTCAATAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
63270437 GGGTATTTCGATAATTTTACCTTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
63270464 GAGTATTTC-AGTAATTCCACCCTACAA
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
63270491 GGGTATTTCGATAATTCTACCTTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
63270518 GGGTATTTCGGTAATT
1 GGGTATTTCGATAATT
63270534 TTACAAATCA
Statistics
Matches: 286, Mismatches: 45, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
26 25 0.09
27 258 0.90
28 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:63270560 original size:54 final size:54
Alignment explanation
Indices: 63270168--63270533 Score: 518
Period size: 54 Copynumber: 6.8 Consensus size: 54
63270158 TGCCCCACGA
* * * * * *
63270168 GGGTATCTCGGTAATTCTACCCTACA-GGGTATTTCAGTATTTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTATAG
* *
63270221 GTGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTATAG
*
63270275 GGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTATAG
* * * *
63270329 GGGTATTTCGGTAATTTTACCTTACAGGGGTATTTCAATCATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTATAG
* * * *
63270383 GGGTATTTCGGTAATTCTACCATACAGGAGTATTTCAATAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTATAG
* * * * *
63270437 GGGTATTTCGATAATTTTACCTTACAGGAGTATTTCAGTAATTCCACCCTACAA
1 GGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTATAG
*
63270491 GGGTATTTCGATAATTCTACCTTACAGGGGTATTTCGGTAATT
1 GGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATT
63270534 TTACAAATCA
Statistics
Matches: 284, Mismatches: 28, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
53 23 0.08
54 261 0.92
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTATAG
Found at i:63270561 original size:27 final size:27
Alignment explanation
Indices: 63270518--63270615 Score: 135
Period size: 27 Copynumber: 3.6 Consensus size: 27
63270508 TACCTTACAG
* * *
63270518 GGGTATTTCGGTAATTTTACAAATC-A
1 GGGTATTTTGGTAATTTTGCTAATCGA
63270544 GGGGTATTTTGGTAATTTTGCTAATCGA
1 -GGGTATTTTGGTAATTTTGCTAATCGA
* *
63270572 AGGTATTTTGGAAATTTTGCTAATCGA
1 GGGTATTTTGGTAATTTTGCTAATCGA
63270599 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
63270616 GGTAAACTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
27 62 0.98
28 1 0.02
ACGTcount: A:0.26, C:0.07, G:0.24, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTGCTAATCGA
Found at i:63282597 original size:28 final size:28
Alignment explanation
Indices: 63282546--63282724 Score: 180
Period size: 28 Copynumber: 6.4 Consensus size: 28
63282536 CGATATTTTG
** *
63282546 CACACTAAGTGCCATGCT-AGATGTCTCG
1 CACACTAAGTGCCATAATCA-ATGTCTCA
** * **
63282574 CACACTAAGTTTCATATTCAATGTCTTG
1 CACACTAAGTGCCATAATCAATGTCTCA
63282602 CACACTAAGTGCCATAATCAATGTCTCA
1 CACACTAAGTGCCATAATCAATGTCTCA
** * * * *
63282630 TGCATTAAATGTCACAATCAATGTCTCA
1 CACACTAAGTGCCATAATCAATGTCTCA
* *
63282658 CGCACTAAGTGCCATAATCAATGTCGCA
1 CACACTAAGTGCCATAATCAATGTCTCA
*
63282686 CACACTAAGTGCCATAATCAATGTCTCG
1 CACACTAAGTGCCATAATCAATGTCTCA
*
63282714 TACACTAAGTG
1 CACACTAAGTG
63282725 TCGTACATAG
Statistics
Matches: 124, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
28 123 0.99
29 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.28
Consensus pattern (28 bp):
CACACTAAGTGCCATAATCAATGTCTCA
Found at i:63285300 original size:28 final size:29
Alignment explanation
Indices: 63285215--63285304 Score: 146
Period size: 29 Copynumber: 3.1 Consensus size: 29
63285205 GAAAGCATGT
63285215 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
63285244 ATACGAATGTGATTTGGGCCTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
63285273 ATATGAATGAGA-TTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
63285301 ATAT
1 ATAT
63285305 ACATGTATGT
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 19 0.34
29 37 0.66
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:63290510 original size:26 final size:27
Alignment explanation
Indices: 63290459--63290510 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
63290449 CTGCCTGGTG
* *
63290459 GCTTTGCCACGTTTACTGTTATTAGCA
1 GCTTTGCCACGTTTACTATTAGTAGCA
*
63290486 GCTTTGCTACG-TTACTATTAGTAGC
1 GCTTTGCCACGTTTACTATTAGTAGC
63290511 TTCACTGCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.40
Consensus pattern (27 bp):
GCTTTGCCACGTTTACTATTAGTAGCA
Found at i:63292009 original size:36 final size:35
Alignment explanation
Indices: 63291962--63292034 Score: 119
Period size: 36 Copynumber: 2.1 Consensus size: 35
63291952 CTCATGCATC
*
63291962 TTTAATTATTATTACTATAAGTTCATTTGAAGTATG
1 TTTAATTATTATTACTATAAGTTCATCTGAA-TATG
*
63291998 TTTAATTATTATTACTATATGTTCATCTGAATATG
1 TTTAATTATTATTACTATAAGTTCATCTGAATATG
63292033 TT
1 TT
63292035 CATATAAGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
35 6 0.17
36 29 0.83
ACGTcount: A:0.32, C:0.07, G:0.10, T:0.52
Consensus pattern (35 bp):
TTTAATTATTATTACTATAAGTTCATCTGAATATG
Found at i:63295256 original size:35 final size:35
Alignment explanation
Indices: 63295217--63295289 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
63295207 GGTATGTGAT
63295217 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
63295252 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
63295287 ATA
1 ATA
63295290 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:63296756 original size:43 final size:43
Alignment explanation
Indices: 63296686--63296998 Score: 413
Period size: 43 Copynumber: 7.2 Consensus size: 43
63296676 GCATGAAACT
63296686 CGGTGATGTGTATT-GGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
63296728 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
63296771 C--TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
63296812 C-ATGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * *
63296854 C-ATGATGTGTATT-GGGCCTTCGTGCCGGTGATATGTATTCGGGCCTTCATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCC-----TA-G----CAGG-CTTCGTGC
*
63296906 CGGTGATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* **
63296949 CGGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
63296992 CGGTGAT
1 CGGTGAT
63296999 TCGAGCAAGG
Statistics
Matches: 246, Mismatches: 10, Indels: 29
0.86 0.04 0.10
Matches are distributed among these distances:
41 54 0.22
42 67 0.27
43 82 0.33
44 3 0.01
46 2 0.01
47 1 0.00
48 1 0.00
49 2 0.01
51 3 0.01
52 8 0.03
53 10 0.04
54 13 0.05
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:63296831 original size:83 final size:84
Alignment explanation
Indices: 63296688--63296998 Score: 410
Period size: 83 Copynumber: 3.6 Consensus size: 84
63296678 ATGAAACTCG
63296688 GTGATGTGTATTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGT
1 GTGATGTGTATTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGT
63296753 GCCTAGCAGGCTTCGTGCC
66 GCCTAGCAGGCTTCGTGCC
*
63296772 -TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC-ATGATGTGTATTCGGGCCTTCG
1 GTGATGTGTATT-GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCG
63296835 TGCCTAGCAGGCTTCGTGCC
65 TGCCTAGCAGGCTTCGTGCC
* * * *
63296855 ATGATGTGTATTGGGCCTTCGTGCCGGTGATATGTATTCGGGCCTTCATGCCGGTGATATGTATT
1 GTGATGTGTATTGGGCCTTCGTGCC-----TA-G----CAGG-CTTCGTGCCGGTGATGTGTATT
63296920 CGGGCCTTCGTGCCTAGCAGGCTTCGTGCC
55 CGGGCCTTCGTGCCTAGCAGGCTTCGTGCC
* **
63296950 GGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGCTTAATGCCGGTGAT
1 -GTGATGTGTATT-GGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGAT
63296999 TCGAGCAAGG
Statistics
Matches: 202, Mismatches: 9, Indels: 30
0.84 0.04 0.12
Matches are distributed among these distances:
83 65 0.32
84 40 0.20
86 14 0.07
87 3 0.01
88 2 0.01
89 1 0.00
91 1 0.00
92 2 0.01
93 3 0.01
94 8 0.04
95 40 0.20
96 11 0.05
97 12 0.06
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.32
Consensus pattern (84 bp):
GTGATGTGTATTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGT
GCCTAGCAGGCTTCGTGCC
Found at i:63296906 original size:27 final size:27
Alignment explanation
Indices: 63296846--63296933 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
63296836 GCCTAGCAGG
* *
63296846 CTTCGTGCC-ATGATGTGTATT-GGGC
1 CTTCGTGCCGGTGATATGTATTCGGGC
63296871 CTTCGTGCCGGTGATATGTATTCGGGC
1 CTTCGTGCCGGTGATATGTATTCGGGC
*
63296898 CTTCATGCCGGTGATATGTATTCGGGC
1 CTTCGTGCCGGTGATATGTATTCGGGC
63296925 CTTCGTGCC
1 CTTCGTGCC
63296934 TAGCAGGCTT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
25 9 0.16
26 10 0.18
27 38 0.67
ACGTcount: A:0.11, C:0.24, G:0.31, T:0.34
Consensus pattern (27 bp):
CTTCGTGCCGGTGATATGTATTCGGGC
Found at i:63297255 original size:29 final size:28
Alignment explanation
Indices: 63297155--63297312 Score: 115
Period size: 29 Copynumber: 5.5 Consensus size: 28
63297145 ATGATTAGAG
* *
63297155 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCGAATT-CTTTAACCGA
** **
63297184 GCACTATGTGTGCGAGA-TCAGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
63297212 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCGAATT-CTTTAACCGA
** **
63297242 GCACTATGTGTGCGAGA-TCGGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
* * *
63297270 GGCACTGTGTGTGC-AGTTCTTCAACCGA
1 -GCACTATGTGTGCGAATTCTTTAACCGA
63297298 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
63297313 GATCGGTCAG
Statistics
Matches: 97, Mismatches: 24, Indels: 17
0.70 0.17 0.12
Matches are distributed among these distances:
27 12 0.12
28 21 0.22
29 56 0.58
30 8 0.08
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:63297305 original size:56 final size:58
Alignment explanation
Indices: 63297152--63297319 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 58
63297142 CGAATGATTA
*
63297152 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
*
63297210 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* *
63297268 GAGGCACTGTGTGTGC-AGTT-CTTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
63297320 CAGTGGGCAC
Statistics
Matches: 106, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
56 31 0.29
57 3 0.03
58 72 0.68
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.29
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:63301308 original size:35 final size:35
Alignment explanation
Indices: 63301269--63301341 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
63301259 GGTATGTGAT
63301269 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
63301304 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
63301339 ATA
1 ATA
63301342 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:63304418 original size:34 final size:34
Alignment explanation
Indices: 63304370--63304467 Score: 144
Period size: 34 Copynumber: 2.9 Consensus size: 34
63304360 GCGGATACAT
* *
63304370 TCTGGGCCTAAGCCCATATCAGTAAC-GATAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAG-TAGCAG
63304404 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
* *
63304438 TCTGGGCTTTAGCCCATTTCAGTAATAGTA
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTA
63304468 ATTAGTGCAG
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
34 58 0.98
35 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (34 bp):
TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
Found at i:63311925 original size:46 final size:45
Alignment explanation
Indices: 63311874--63312001 Score: 154
Period size: 46 Copynumber: 2.8 Consensus size: 45
63311864 ATGGTTGAGC
*
63311874 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA--GAT-CAACAGG
* * *
63311921 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATCAAC-AGG
63311965 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
63312002 GGGCGGGTTA
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
42 2 0.03
43 3 0.04
44 2 0.03
45 2 0.03
46 58 0.83
47 3 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGATCAACAGG
Found at i:63312262 original size:19 final size:20
Alignment explanation
Indices: 63312225--63312262 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
63312215 ATAAGGTGGT
63312225 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
63312245 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
63312263 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:63315803 original size:23 final size:23
Alignment explanation
Indices: 63315754--63315803 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
63315744 ACCCCATGCA
*
63315754 ATGCAACATAGTATTATACATGG
1 ATGCAACATAATATTATACATGG
63315777 ATGCAACATACATA-TA-ACATGG
1 ATGCAACATA-ATATTATACATGG
63315799 CATGC
1 -ATGC
63315804 TCAAATATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 6 0.25
23 16 0.67
24 2 0.08
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (23 bp):
ATGCAACATAATATTATACATGG
Found at i:63315884 original size:27 final size:27
Alignment explanation
Indices: 63315839--63315958 Score: 118
Period size: 27 Copynumber: 4.5 Consensus size: 27
63315829 AACAAATCTG
* * * *
63315839 TCATTTTACCTTACCGGGGTATTACAA
1 TCATTTTACCCTACAGGGGTATTTCGA
* *
63315866 TCATTTTACCCTACAGGGGTATTTTGG
1 TCATTTTACCCTACAGGGGTATTTCGA
* * *
63315893 TCATTCTACCCTA-TGAGGGTATTTCGG
1 TCATTTTACCCTACAG-GGGTATTTCGA
* *
63315920 TCATTTTACCCTATA-GGGTATTTCTA
1 TCATTTTACCCTACAGGGGTATTTCGA
63315946 TCATTTTACCCTA
1 TCATTTTACCCTA
63315959 TGAGGTTATT
Statistics
Matches: 78, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
26 23 0.29
27 55 0.71
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTTCGA
Found at i:63315958 original size:53 final size:54
Alignment explanation
Indices: 63315866--63315980 Score: 153
Period size: 53 Copynumber: 2.1 Consensus size: 54
63315856 GGTATTACAA
*
63315866 TCATTTTACCCTACAGGGGTATTTTGGTCATTCTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTACAGGGGTATTTTGATCATTCTACCCTATGAGGGTATTTCGG
* * * *
63315920 TCATTTTACCCTATA-GGGTATTTCT-ATCATTTTACCCTATGAGGTTATTTTGG
1 TCATTTTACCCTACAGGGGTATTT-TGATCATTCTACCCTATGAGGGTATTTCGG
*
63315973 TTATTTTA
1 TCATTTTA
63315981 TCACATAAGG
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
53 39 0.72
54 15 0.28
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.45
Consensus pattern (54 bp):
TCATTTTACCCTACAGGGGTATTTTGATCATTCTACCCTATGAGGGTATTTCGG
Found at i:63315978 original size:27 final size:27
Alignment explanation
Indices: 63315866--63315980 Score: 137
Period size: 27 Copynumber: 4.3 Consensus size: 27
63315856 GGTATTACAA
*
63315866 TCATTTTACCCTA-CAGGGGTATTTTGG
1 TCATTTTACCCTATGA-GGGTATTTTGG
* *
63315893 TCATTCTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTTGG
*
63315920 TCATTTTACCCTAT-AGGGTATTTCT-A
1 TCATTTTACCCTATGAGGGTATTT-TGG
*
63315946 TCATTTTACCCTATGAGGTTATTTTGG
1 TCATTTTACCCTATGAGGGTATTTTGG
*
63315973 TTATTTTA
1 TCATTTTA
63315981 TCACATAAGG
Statistics
Matches: 75, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
26 24 0.32
27 50 0.67
28 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.45
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTTGG
Found at i:63316016 original size:54 final size:54
Alignment explanation
Indices: 63315972--63316080 Score: 168
Period size: 54 Copynumber: 2.0 Consensus size: 54
63315962 GGTTATTTTG
63315972 GTTATTTTATCA-CATAAGGAC-AAAATCGTCATTTTATCACATGAGGGCAAAATC
1 GTTATTTTAT-AGCATAAGG-CTAAAATCGTCATTTTATCACATGAGGGCAAAATC
* *
63316026 GTTATTTTATAGCCTAAGGCTAAAATCGTCATTTTATCACATGAGGGTAAAATC
1 GTTATTTTATAGCATAAGGCTAAAATCGTCATTTTATCACATGAGGGCAAAATC
63316080 G
1 G
63316081 CCATTTCATC
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
53 2 0.04
54 49 0.96
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.33
Consensus pattern (54 bp):
GTTATTTTATAGCATAAGGCTAAAATCGTCATTTTATCACATGAGGGCAAAATC
Found at i:63316100 original size:27 final size:27
Alignment explanation
Indices: 63315975--63316100 Score: 146
Period size: 27 Copynumber: 4.7 Consensus size: 27
63315965 TATTTTGGTT
* **
63315975 ATTTTATCACATAAGGACAAAATCGTC
1 ATTTTATCACATGAGGGTAAAATCGTC
* *
63316002 ATTTTATCACATGAGGGCAAAATCGTT
1 ATTTTATCACATGAGGGTAAAATCGTC
* * *
63316029 ATTTTAT-AGCCTAAGGCTAAAATCGTC
1 ATTTTATCA-CATGAGGGTAAAATCGTC
*
63316056 ATTTTATCACATGAGGGTAAAATCGCC
1 ATTTTATCACATGAGGGTAAAATCGTC
*
63316083 ATTTCATCACATGAGGGT
1 ATTTTATCACATGAGGGT
63316101 TCAAGTATGC
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 82 0.98
28 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (27 bp):
ATTTTATCACATGAGGGTAAAATCGTC
Found at i:63322701 original size:40 final size:40
Alignment explanation
Indices: 63322656--63322785 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
63322646 CGGAATATAA
*
63322656 CCGGATATAACCATGTACACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATCTACACAAATGCCTTCGGGTCTTAGC
* ** * *
63322696 CCGGATAGAA-TGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCATCT-ACACAAATGCCTTCGGGTCTTAGC
* * * *
63322736 CCGGATGTAGCCA-CTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCATCTA-CACAAATGCCTTCGGGTCTTAGC
63322776 CCGGATATAA
1 CCGGATATAA
63322786 TTTCCAGCAT
Statistics
Matches: 70, Mismatches: 17, Indels: 6
0.75 0.18 0.06
Matches are distributed among these distances:
39 2 0.03
40 68 0.97
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCATCTACACAAATGCCTTCGGGTCTTAGC
Found at i:63322800 original size:40 final size:40
Alignment explanation
Indices: 63322673--63322823 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
63322663 TAACCATGTA
* * *
63322673 CACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-G
1 CACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CAG
* ** * *
63322713 CACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAG
1 CAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCAG
* *
63322753 CACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCAG
1 CACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCAG
* *
63322793 CATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 CACAATTGCCTTCGGG-TCTTAGCCCGGATAT
63322824 CATTCAATTT
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 85 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCAG
Found at i:63322806 original size:80 final size:80
Alignment explanation
Indices: 63322673--63322821 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
63322663 TAACCATGTA
*
63322673 CACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGCC
1 CACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGCC
63322737 CGGATGTAGCCACTAG
65 CGGATGTAGCCACTAG
* * * * *
63322753 CACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAGC
1 CACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAGC
63322816 CCGGAT
64 CCGGAT
63322822 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (80 bp):
CACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCCC
GGATGTAGCCACTAG
Found at i:63324611 original size:13 final size:13
Alignment explanation
Indices: 63324595--63324624 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
63324585 CGGTCTGGCC
*
63324595 ACACGGCCGTGTG
1 ACACGACCGTGTG
63324608 ACACGACCGTGTG
1 ACACGACCGTGTG
63324621 ACAC
1 ACAC
63324625 TAAATTGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.33, G:0.30, T:0.13
Consensus pattern (13 bp):
ACACGACCGTGTG
Found at i:63345972 original size:40 final size:40
Alignment explanation
Indices: 63345914--63346122 Score: 228
Period size: 40 Copynumber: 5.2 Consensus size: 40
63345904 TGAATGATAC
* *
63345914 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
63345954 CCGGGCTAAGACCTGAAGGCATTCGTG-TGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCT-AG-TGATTATAT
* *
63345994 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
63346034 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * *
63346074 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GATTATAT
63346115 CC-GGCTAA
1 CCGGGCTAA
63346123 ATTCCGAAGA
Statistics
Matches: 143, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
39 2 0.01
40 133 0.93
41 8 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:63347646 original size:52 final size:52
Alignment explanation
Indices: 63347517--63347648 Score: 180
Period size: 50 Copynumber: 2.6 Consensus size: 52
63347507 ATGTGTTCTG
* *
63347517 CATTTAATAAAGTCATGCATTATGTAACT-CTCATGTTAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCTCATGTTAGTTAAGTTTGCAT
* *
63347568 CA-TAAATTATGACATGCATTATGTAACTCCT-ATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCTCATGTTAGTT-AAGTTTGCAT
* *
63347619 CATTAAATTAAGTCAAGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
63347649 ATTTGTTCAT
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
50 31 0.44
51 16 0.23
52 23 0.33
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (52 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCTCATGTTAGTTAAGTTTGCAT
Found at i:63347665 original size:51 final size:52
Alignment explanation
Indices: 63347533--63347655 Score: 153
Period size: 52 Copynumber: 2.4 Consensus size: 52
63347523 ATAAAGTCAT
* * *
63347533 GCATTATGTAACTC-TCATGTTAGTT-AAGTTTGCATCA-TAAATTATGACAT
1 GCATTAAGTAACTCAT-ATGTTAGTTAAAGTTTGCATCATTAAATTAAGACAA
* * *
63347583 GCATTATGTAACTCCTATGTTAGTTAAAGTTTGCATCATTAAATTAAGTCAA
1 GCATTAAGTAACTCATATGTTAGTTAAAGTTTGCATCATTAAATTAAGACAA
*
63347635 GCATTAAGTAACTCATTTGTT
1 GCATTAAGTAACTCATATGTT
63347656 CATTTAGTTT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
50 23 0.36
51 13 0.20
52 28 0.44
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.40
Consensus pattern (52 bp):
GCATTAAGTAACTCATATGTTAGTTAAAGTTTGCATCATTAAATTAAGACAA
Found at i:63349112 original size:29 final size:29
Alignment explanation
Indices: 63349077--63349134 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
63349067 ATCCTTAAAT
63349077 ATTGAGTGTGACGATCATAAGCAAATGAA
1 ATTGAGTGTGACGATCATAAGCAAATGAA
*
63349106 ATTGAGTGTGACGATCTTAAGCAAATGAA
1 ATTGAGTGTGACGATCATAAGCAAATGAA
63349135 CTCACACCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (29 bp):
ATTGAGTGTGACGATCATAAGCAAATGAA
Found at i:63351744 original size:5 final size:5
Alignment explanation
Indices: 63351734--63351758 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
63351724 ACTAATTATG
63351734 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
63351759 TACAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:63356980 original size:40 final size:40
Alignment explanation
Indices: 63356852--63356982 Score: 142
Period size: 40 Copynumber: 3.3 Consensus size: 40
63356842 TATGCTGGAA
* *
63356852 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTA-GTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
** * * * *
63356892 GCTACATCTGGGCTAAGACCCGAAGGCATTCGTG--CGAG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTG
63356930 ATATACTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTG
1 AT-TA-TATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTG
63356972 ATTATATCCGG
1 ATTATATCCGG
63356983 TTATATTCCG
Statistics
Matches: 72, Mismatches: 14, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
38 2 0.03
39 2 0.03
40 61 0.85
41 2 0.03
42 5 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTG
Found at i:63358401 original size:47 final size:47
Alignment explanation
Indices: 63358347--63358987 Score: 1066
Period size: 47 Copynumber: 13.6 Consensus size: 47
63358337 GGGTGTTACA
* *
63358347 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATCTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63358394 ATGAATGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63358441 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
* *
63358488 ATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63358535 ATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63358582 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63358629 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
* *
63358676 ATGAATGTGAAAGTGTATATATGTGATAATGCCTAATGGCCAATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63358723 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
* *
63358770 ATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63358817 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
* * * *
63358864 ATGAATGTGAAAGTGTATATATGAGATAAGACTTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
* * *
63358911 ATGGATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
* *
63358958 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
63358988 TCCCGAAGGG
Statistics
Matches: 555, Mismatches: 39, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 555 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
Found at i:63360995 original size:38 final size:38
Alignment explanation
Indices: 63360944--63361056 Score: 138
Period size: 38 Copynumber: 3.0 Consensus size: 38
63360934 AATTCGGGCT
*
63360944 TAAAGACCCGATGACTATAAGTAGAGATTGTGTCCGGG
1 TAAAGACCCGATGACTATAAGTAGAGATTATGTCCGGG
* *
63360982 TAAAGACCCGATGACTATATA-TGGAGATTATGCCCGGG
1 TAAAGACCCGATGACTATA-AGTAGAGATTATGTCCGGG
* * ** *
63361020 TAAAGATCCGATGGCTATGTGCAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATAAGTAGAGATTATGTCCGG
63361057 ATTAAAATTC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
38 62 0.98
39 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (38 bp):
TAAAGACCCGATGACTATAAGTAGAGATTATGTCCGGG
Found at i:63361085 original size:38 final size:38
Alignment explanation
Indices: 63360944--63361086 Score: 108
Period size: 38 Copynumber: 3.8 Consensus size: 38
63360934 AATTCGGGCT
* * ** * * *
63360944 TAAAGACCCGATGACTATAAGTAGAGATTGTGTCCGGG
1 TAAAGATCCGATGGCTATGTGTGGAGATTATGCCCGGG
* * * *
63360982 TAAAGACCCGATGACTATATATGGAGATTATGCCCGGG
1 TAAAGATCCGATGGCTATGTGTGGAGATTATGCCCGGG
** * *
63361020 TAAAGATCCGATGGCTATGTGCAGAGATTATGTCCGGAT
1 TAAAGATCCGATGGCTATGTGTGGAGATTATGCCCGG-G
* * *
63361059 TAAA-ATTCGCTGGCTTTGTGTGGAGATT
1 TAAAGATCCGATGGCTATGTGTGGAGATT
63361087 TCATCCGAGC
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
38 82 0.95
39 4 0.05
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (38 bp):
TAAAGATCCGATGGCTATGTGTGGAGATTATGCCCGGG
Found at i:63361173 original size:40 final size:40
Alignment explanation
Indices: 63361114--63361260 Score: 258
Period size: 40 Copynumber: 3.7 Consensus size: 40
63361104 CTCGACGATG
* *
63361114 ATCCGGGTTAAGTCTCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
63361154 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
63361194 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
* *
63361234 ATCCGGGCTAAGTCCTGAAGGGCATTC
1 ATCCGGGCTAAGTCCCGAAGAGCATTC
63361261 TTGCCGATGA
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAC
Found at i:63361465 original size:24 final size:25
Alignment explanation
Indices: 63361433--63361486 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
63361423 TGTGTAATAA
*
63361433 CGAATGAATT-AGGCACTATGTGTG
1 CGAATGAATTGAGACACTATGTGTG
*
63361457 CGAATGAATTGAGACACTGTGTGTG
1 CGAATGAATTGAGACACTATGTGTG
63361482 CGAAT
1 CGAAT
63361487 TCTTTAACCG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.28
Consensus pattern (25 bp):
CGAATGAATTGAGACACTATGTGTG
Found at i:63365219 original size:29 final size:29
Alignment explanation
Indices: 63365158--63365256 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
63365148 ACAGTAAGTC
63365158 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
63365186 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
63365215 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
63365243 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63365257 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:63371502 original size:28 final size:28
Alignment explanation
Indices: 63371441--63371538 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
63371431 TCACAAATTG
** * *
63371441 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
63371470 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
63371498 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
63371526 GCACTAAGTGTGC
1 GCACTAAGTGTGC
63371539 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:63375814 original size:29 final size:29
Alignment explanation
Indices: 63375753--63375851 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
63375743 ACAGTAAGTC
63375753 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
63375781 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
63375810 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
63375838 CGCACACTTAGTGC
1 CGCACACTTAGTGC
63375852 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:63378182 original size:47 final size:47
Alignment explanation
Indices: 63378129--63378893 Score: 1287
Period size: 47 Copynumber: 16.3 Consensus size: 47
63378119 ACAAGATATG
*
63378129 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
63378176 TATATGTGACAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
63378223 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
63378270 TATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
63378317 CATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
63378364 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
63378411 CATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
63378458 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* **
63378505 TATATGTGACAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
63378552 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
63378599 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
63378646 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
63378693 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
63378740 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
63378787 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
63378834 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
*
63378881 TAAATGTGATAAG
1 TATATGTGATAAG
63378894 TCCCGAAGGG
Statistics
Matches: 670, Mismatches: 48, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 670 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:63378395 original size:22 final size:22
Alignment explanation
Indices: 63378367--63378442 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
63378357 AAGTGTATAT
63378367 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* *** **
63378389 ATGTGATGAATGTGAAAGTGTACA
1 ATGTGAT-AAGGCCTAA-TGGCCA
63378413 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
63378436 ATGTGAT
1 ATGTGAT
63378443 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 12, Indels: 6
0.68 0.21 0.11
Matches are distributed among these distances:
22 14 0.36
23 9 0.23
24 9 0.23
25 7 0.18
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:63378489 original size:22 final size:22
Alignment explanation
Indices: 63378367--63378489 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
63378357 AAGTGTATAT
*
63378367 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
63378389 ATGTGATGAATG-TGAAAGTGTACA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
*
63378413 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * ***
63378436 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
63378460 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
63378483 ATGTGAT
1 ATGTGAT
63378490 GAATGTGAAA
Statistics
Matches: 70, Mismatches: 21, Indels: 20
0.63 0.19 0.18
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:63378583 original size:22 final size:22
Alignment explanation
Indices: 63378555--63378677 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
63378545 AAGTGTATAT
63378555 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
63378577 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
*
63378601 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * ***
63378624 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
63378648 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
63378671 ATGTGAT
1 ATGTGAT
63378678 GAATGTGAAA
Statistics
Matches: 69, Mismatches: 22, Indels: 20
0.62 0.20 0.18
Matches are distributed among these distances:
22 22 0.32
23 16 0.23
24 16 0.23
25 15 0.22
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:63381059 original size:18 final size:19
Alignment explanation
Indices: 63381001--63381070 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
63380991 AAACTTTTAA
* *
63381001 TTTTATAACTTTCTAATAAT
1 TTTTATAA-TTTTTAACAAT
*
63381021 TTTTATAATATTTAACAAT
1 TTTTATAATTTTTAACAAT
* *
63381040 TTTTATACTTTTTATC-AT
1 TTTTATAATTTTTAACAAT
*
63381058 TTTAATAATTTTT
1 TTTTATAATTTTT
63381071 CTATATATAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
18 13 0.31
19 21 0.50
20 8 0.19
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTATAATTTTTAACAAT
Found at i:63381060 original size:9 final size:9
Alignment explanation
Indices: 63381001--63381070 Score: 59
Period size: 9 Copynumber: 7.4 Consensus size: 9
63380991 AAACTTTTAA
63381001 TTTTATAACT
1 TTTTATAA-T
*
63381011 TTCTAATAAT
1 TT-TTATAAT
63381021 TTTTATAAT
1 TTTTATAAT
* *
63381030 ATTTAACAAT
1 -TTTTATAAT
*
63381040 TTTTATACT
1 TTTTATAAT
*
63381049 TTTTATCAT
1 TTTTATAAT
*
63381058 TTTAATAAT
1 TTTTATAAT
63381067 TTTT
1 TTTT
63381071 CTATATATAA
Statistics
Matches: 46, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
9 29 0.63
10 12 0.26
11 5 0.11
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (9 bp):
TTTTATAAT
Found at i:63382418 original size:14 final size:14
Alignment explanation
Indices: 63382399--63382428 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
63382389 TCGTGCCAAG
63382399 TGGTGCGACTCGAT
1 TGGTGCGACTCGAT
63382413 TGGTGCGACTCGAT
1 TGGTGCGACTCGAT
63382427 TG
1 TG
63382429 CACCATCTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.20, G:0.37, T:0.30
Consensus pattern (14 bp):
TGGTGCGACTCGAT
Found at i:63389099 original size:34 final size:34
Alignment explanation
Indices: 63389034--63389099 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
63389024 AAAAATCGTA
* *
63389034 CCTAATTGAGTCAAAATAGCATGGCCGAAAGAAT
1 CCTAATTGAGTCAAAATAGCATGGACAAAAGAAT
63389068 CCTAATTGAGTCAAAATAGCATGGACAAAAGA
1 CCTAATTGAGTCAAAATAGCATGGACAAAAGA
63389100 TGATAGAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.20
Consensus pattern (34 bp):
CCTAATTGAGTCAAAATAGCATGGACAAAAGAAT
Found at i:63390890 original size:26 final size:26
Alignment explanation
Indices: 63390861--63390912 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
63390851 TCCTCTCTCA
*
63390861 AGCCATATAATAG-GAAGCTCACAAAG
1 AGCCAT-TAATAGAGAAGCTCAAAAAG
*
63390887 AGCCATTAATCGAGAAGCTCAAAAAG
1 AGCCATTAATAGAGAAGCTCAAAAAG
63390913 GGCCTATCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.46, C:0.19, G:0.19, T:0.15
Consensus pattern (26 bp):
AGCCATTAATAGAGAAGCTCAAAAAG
Found at i:63392394 original size:42 final size:42
Alignment explanation
Indices: 63392348--63392510 Score: 202
Period size: 42 Copynumber: 3.9 Consensus size: 42
63392338 TATCATACAA
* * *
63392348 ATGCCATATCCCAGATATGGTCTTCCATGTATTCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
* * * *
63392390 ATGCCA-ATGGCCCGGCTATGGTCTTACACGAAGTCTCATATCA
1 ATGCCATAT--CCCAGATATGGTCTTACACGTAGTCTCATATCG
* * *
63392433 ATGCCATATCCTAGACATGGTCTTACACGTAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
*
63392475 ATGCCATATCCCAGATATAGTCTTACACGTAGTCTC
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTC
63392511 GTTAACCCTA
Statistics
Matches: 101, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.02
42 65 0.64
43 32 0.32
44 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATCG
Found at i:63392472 original size:85 final size:84
Alignment explanation
Indices: 63392347--63392510 Score: 213
Period size: 85 Copynumber: 1.9 Consensus size: 84
63392337 GTATCATACA
* * * * * * *
63392347 AATGCCATATCCCAGATATGGTCTTCCATGTATTCTCATATCGATGCCA-ATGGCCCGGCTATGG
1 AATGCCATATCCCAGACATGGTCTTACACGTAGTCTCATATCGATGCCATAT--CCCAGATATAG
63392411 TCTTACACGAAGTCTCATATC
64 TCTTACACGAAGTCTCATATC
* *
63392432 AATGCCATATCCTAGACATGGTCTTACACGTAGTCTCATATTGATGCCATATCCCAGATATAGTC
1 AATGCCATATCCCAGACATGGTCTTACACGTAGTCTCATATCGATGCCATATCCCAGATATAGTC
*
63392497 TTACACGTAGTCTC
66 TTACACGAAGTCTC
63392511 GTTAACCCTA
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 23 0.34
85 43 0.63
86 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.31
Consensus pattern (84 bp):
AATGCCATATCCCAGACATGGTCTTACACGTAGTCTCATATCGATGCCATATCCCAGATATAGTC
TTACACGAAGTCTCATATC
Found at i:63393916 original size:65 final size:65
Alignment explanation
Indices: 63393847--63393971 Score: 160
Period size: 65 Copynumber: 1.9 Consensus size: 65
63393837 AAAACTTATG
* * *
63393847 TTTGTGTCTACAGCATATACAGGATCACAACTGATCATAAAACAGGACACTCACAAAGAGTTGCA
1 TTTGTGTCTACAACATATACAGGATCACAACCGATAATAAAACAGGACACTCACAAAGAGTTGCA
* ** * * **
63393912 TTTGTGTCTACAATATATGTAGGATCACAACCGATAATATAATAGGATGCTCACAAAGAG
1 TTTGTGTCTACAACATATACAGGATCACAACCGATAATAAAACAGGACACTCACAAAGAG
63393972 CTACGGTAGT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
65 50 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (65 bp):
TTTGTGTCTACAACATATACAGGATCACAACCGATAATAAAACAGGACACTCACAAAGAGTTGCA
Found at i:63408029 original size:27 final size:26
Alignment explanation
Indices: 63407997--63408091 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 26
63407987 CTACGTCATA
*
63407997 ATTATCTGATCTGGTGGCTCTGGCAC
1 ATTATCTGATCTGGTGGCTCTGCCAC
* *
63408023 ATATATCTGTTCTGGTGGCTTTGCCAC
1 AT-TATCTGATCTGGTGGCTCTGCCAC
* *
63408050 GATTATCTGTATCTGGTGACTCTGTCAC
1 -ATTATCTG-ATCTGGTGGCTCTGCCAC
* *
63408078 CTTATCTGTTCTGG
1 ATTATCTGATCTGG
63408092 CAGCCATGCT
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
26 7 0.12
27 34 0.60
28 16 0.28
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTATCTGATCTGGTGGCTCTGCCAC
Found at i:63415839 original size:27 final size:26
Alignment explanation
Indices: 63415783--63415890 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
63415773 AGGAAGCGTC
* * *
63415783 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
*
63415810 CTGGTGGCTCTGCTACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
63415837 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
63415865 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
63415891 TTGGCTGCCA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 3 0.04
27 51 0.72
28 17 0.24
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:63415887 original size:54 final size:54
Alignment explanation
Indices: 63415783--63415890 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
63415773 AGGAAGCGTC
* *
63415783 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTCTGCTACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCTACATATATCTGTT
* *
63415837 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTG-TCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCT-ACATATATCTGTT
63415891 TTGGCTGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
54 31 0.65
55 17 0.35
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCTACATATATCTGTT
Found at i:63418606 original size:40 final size:40
Alignment explanation
Indices: 63418557--63418653 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
63418547 ACTCAATATC
*** **
63418557 TCGCACACTAAGTGTTGTACATAGTTGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* * *
63418597 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
63418637 TCGCACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
63418654 CAAATAACCG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
Found at i:63418676 original size:40 final size:40
Alignment explanation
Indices: 63418583--63418664 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
63418573 GTACATAGTT
* * * * *
63418583 GAAGCTATCTCAAATCGCACACTAAGTGCCATATATAGCC
1 GAAGCTATATCGAATCGCACACTAAGTGCCACAAATAACC
*
63418623 GAAGCTATGTCGAATCGCACACTAAGTGCCACAAATAACC
1 GAAGCTATATCGAATCGCACACTAAGTGCCACAAATAACC
63418663 GA
1 GA
63418665 TTTATCATCG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.37, C:0.27, G:0.17, T:0.20
Consensus pattern (40 bp):
GAAGCTATATCGAATCGCACACTAAGTGCCACAAATAACC
Found at i:63421494 original size:111 final size:111
Alignment explanation
Indices: 63421300--63421522 Score: 392
Period size: 111 Copynumber: 2.0 Consensus size: 111
63421290 AGTGTATGAG
63421300 AATTGTATGTGTATTTGTGTAATAAGTTCAGTAATGCTCCATAACCCTATTCTAGAGTTGAATAC
1 AATTGTATGTGTATTTGTGTAATAAGTTCAGTAATGCTCCATAACCCTATTCTAGAGTTGAATAC
*
63421365 GGGTGAGGGGTGTTACATTCTTAATGTGAATTACCAAATTATTCCT
66 GGATGAGGGGTGTTACATTCTTAATGTGAATTACCAAATTATTCCT
* * *
63421411 AATTGTATGTGTATTTGTGTAATAAGTTCAGTAATGCTCCGTAACCCTATTTTGGAGTTGAATAC
1 AATTGTATGTGTATTTGTGTAATAAGTTCAGTAATGCTCCATAACCCTATTCTAGAGTTGAATAC
* *
63421476 GGATGAGGGGTGTTACATTCTTAATGTGAATTTCCAAATTGTTCCT
66 GGATGAGGGGTGTTACATTCTTAATGTGAATTACCAAATTATTCCT
63421522 A
1 A
63421523 CAATTAATGT
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 106 1.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.39
Consensus pattern (111 bp):
AATTGTATGTGTATTTGTGTAATAAGTTCAGTAATGCTCCATAACCCTATTCTAGAGTTGAATAC
GGATGAGGGGTGTTACATTCTTAATGTGAATTACCAAATTATTCCT
Found at i:63422791 original size:23 final size:23
Alignment explanation
Indices: 63422761--63422807 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
63422751 GTCTACATTA
63422761 TGATAGGAAAGATGTATGAAAAT
1 TGATAGGAAAGATGTATGAAAAT
63422784 TGATAGGAAAGATGTATGAAAAT
1 TGATAGGAAAGATGTATGAAAAT
63422807 T
1 T
63422808 TTGATAAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.47, C:0.00, G:0.26, T:0.28
Consensus pattern (23 bp):
TGATAGGAAAGATGTATGAAAAT
Found at i:63425587 original size:93 final size:93
Alignment explanation
Indices: 63425475--63425644 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
63425465 CCCTTAAGTG
*
63425475 AACTCGGACTCAACTCAACGAGCTC-AGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGCTCGA-ACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
*
63425539 CGAGTTTGGATGCCTAGTTACATCTCACA
65 CGAGTTCGGATGCCTAGTTACATCTCACA
* * * *
63425568 AACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTGAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
63425633 GAGTTCGGATGC
66 GAGTTCGGATGC
63425645 TCAACCATCC
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 69 0.99
94 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACA
Found at i:63425639 original size:46 final size:46
Alignment explanation
Indices: 63425469--63425639 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
63425459 AAACCGCCCT
* *
63425469 TAAGTGAACTCGGACTCAACTCAACGAGCTC-AGGCATTCACATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCACATCC
* *
63425514 ATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT-C
1 -TAAGTGAACTCGGACTCAACTCAACGAG-TTCGA-GAC-A-TTCACATCC
* ** *
63425563 TCA-CAAACTCGGACTCAACTCAACGAGTTCGA-ACATTCGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCACATCC
*
63425607 GTAAGTGAACTCGGACTGAACTCAACGAGTTCG
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCG
63425640 GATGCTCAAC
Statistics
Matches: 103, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 57 0.55
47 23 0.22
48 3 0.03
49 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGAGACATTCACATCC
Found at i:63427283 original size:2 final size:2
Alignment explanation
Indices: 63427276--63427302 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
63427266 ATATGGAAAG
63427276 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
63427303 GAAAATCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63430533 original size:26 final size:26
Alignment explanation
Indices: 63430504--63430555 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
63430494 GCTTATGACT
*
63430504 TAATCTAAAATGTACATATTAAAACA
1 TAATCCAAAATGTACATATTAAAACA
63430530 TAATCCAAAATGTACATATTAAAACA
1 TAATCCAAAATGTACATATTAAAACA
63430556 ATTTATTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.54, C:0.13, G:0.04, T:0.29
Consensus pattern (26 bp):
TAATCCAAAATGTACATATTAAAACA
Found at i:63441386 original size:49 final size:49
Alignment explanation
Indices: 63441310--63441547 Score: 235
Period size: 50 Copynumber: 4.8 Consensus size: 49
63441300 TAGCCAAAGC
* ** * *
63441310 TATCTGGTACGCACAGTAGCCTACACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* *
63441359 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* ** * * *
63441409 CATCTAATACACGTAGTAGCCTGCAATTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * *
63441460 TATCGGGTACGCATAGTA-CCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * * * *
63441508 AACCCGGTATATGTAGTAGCATGCACTTAGTACTACACAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACAC
63441548 ATGACCTCAC
Statistics
Matches: 153, Mismatches: 32, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
48 12 0.08
49 62 0.41
50 66 0.43
51 13 0.08
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:63441482 original size:50 final size:49
Alignment explanation
Indices: 63441310--63441553 Score: 229
Period size: 49 Copynumber: 4.9 Consensus size: 49
63441300 TAGCCAAAGC
* * * * *
63441310 TATCTGGTACGCACAGTAGCCTACACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
63441359 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* ** * * *
63441409 CATCTAATACACGTAGTAGCCTGCAATTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-T
* * * *
63441460 TATCGGGTACGCATAGTA-CCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * * ** * *
63441508 AACCCGGTATATGTAGTAGCATGCACTTAGTACTACACACATGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
63441554 TCACAATAGA
Statistics
Matches: 157, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
48 12 0.08
49 66 0.42
50 66 0.42
51 13 0.08
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:63441524 original size:99 final size:98
Alignment explanation
Indices: 63441324--63441547 Score: 247
Period size: 99 Copynumber: 2.3 Consensus size: 98
63441314 TGGTACGCAC
* * * *
63441324 AGTAGCCTACACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCACTTAG
1 AGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTAG
*
63441389 TACTACACACGTGACCTAACCATCTAATACACGT
66 TACTACACACGCGACCTAACCA-CTAATACACGT
* * * *
63441423 AGTAGCCTGCAATTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTA-CCTGCACTT
1 AGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTGCACTT
* ** * *
63441487 AGTACTACACATGCGACCAATAACC-C-GGTATATGT
64 AGTACTACACACGCGACC--TAACCACTAATACACGT
*
63441522 AGTAGCATGCACTTAGTACTACACAC
1 AGTAGCCTGCACTTAGTACTACACAC
63441548 ATGACCTCAC
Statistics
Matches: 105, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
99 55 0.52
100 29 0.28
101 16 0.15
102 5 0.05
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (98 bp):
AGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTGCACTTAG
TACTACACACGCGACCTAACCACTAATACACGT
Found at i:63448393 original size:15 final size:15
Alignment explanation
Indices: 63448373--63448403 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63448363 ATTAATTTCA
63448373 TTTACATAGCAACAT
1 TTTACATAGCAACAT
*
63448388 TTTACATAGGAACAT
1 TTTACATAGCAACAT
63448403 T
1 T
63448404 ACAATAACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.35
Consensus pattern (15 bp):
TTTACATAGCAACAT
Found at i:63457807 original size:42 final size:41
Alignment explanation
Indices: 63457662--63457813 Score: 117
Period size: 42 Copynumber: 3.7 Consensus size: 41
63457652 AATCATGCCA
* * * * **
63457662 ATGCCATATTCCAAATATGGTCTTACATGGGATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACA-AGAATCTCATAACG
* * * * *
63457704 ATGCCA-ATAGCCAGCTATGGTCTTACAAGATTCTTATATCG
1 ATGCCATAT-CCCAGATATGGTCTTACAAGAATCTCATAACG
* * *
63457745 ATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAACG
1 ATGCCATATCCCAGATATGGTCTTACAAG-AATCTCATAACG
* * *
63457787 ATGTCATATCCCATATATGGTATTACA
1 ATGCCATATCCCAGATATGGTCTTACA
63457814 TGTAAACTCA
Statistics
Matches: 86, Mismatches: 21, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
41 33 0.38
42 53 0.62
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACAAGAATCTCATAACG
Found at i:63462297 original size:44 final size:44
Alignment explanation
Indices: 63462247--63462335 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
63462237 ATATAAAAAG
*
63462247 CTAGCTTCGAGCTCAGGGGCTGTCTAGGATCATCTTTACACTAT
1 CTAGCTTCGAGCTCAGGGACTGTCTAGGATCATCTTTACACTAT
63462291 CTAGCTTCGAGCTCAGGGACTGTCTAGGATCATCTTTACACTAT
1 CTAGCTTCGAGCTCAGGGACTGTCTAGGATCATCTTTACACTAT
63462335 C
1 C
63462336 GACCATTATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.31
Consensus pattern (44 bp):
CTAGCTTCGAGCTCAGGGACTGTCTAGGATCATCTTTACACTAT
Found at i:63467457 original size:40 final size:40
Alignment explanation
Indices: 63467402--63467651 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
63467392 AACATTGGAA
63467402 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63467442 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63467482 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
63467522 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
63467562 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
63467601 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
63467642 CTATATCCGG
1 ATATATCCGG
63467652 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:63471608 original size:42 final size:41
Alignment explanation
Indices: 63471459--63471609 Score: 196
Period size: 42 Copynumber: 3.6 Consensus size: 41
63471449 ATACCAATGT
63471459 CATATCCCAGATATGGTCTTACATGGGA-TCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACAT--GATTCTCATATCGATGC
* * * *
63471501 CAATAGCCTAGCTATGGTCTTACACGATTCTCATATCGATGC
1 C-ATATCCCAGATATGGTCTTACATGATTCTCATATCGATGC
* * *
63471543 CATGTCCCAGACATGGTCTTACATGAATTCTCATAACGATGC
1 CATATCCCAGATATGGTCTTACATG-ATTCTCATATCGATGC
63471585 CATATCCCAGATATGGTCTTACATG
1 CATATCCCAGATATGGTCTTACATG
63471610 TAAATTCATA
Statistics
Matches: 93, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
41 20 0.22
42 54 0.58
43 19 0.20
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (41 bp):
CATATCCCAGATATGGTCTTACATGATTCTCATATCGATGC
Found at i:63489480 original size:26 final size:26
Alignment explanation
Indices: 63489415--63489498 Score: 104
Period size: 26 Copynumber: 3.3 Consensus size: 26
63489405 CTGGAGGCCT
63489415 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
63489439 AGCCC-TTTCGGTAAACTAGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
63489464 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
63489490 AGCCCTTTT
1 AGCCCTTTT
63489499 TCACTTCCTC
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
22 3 0.06
23 2 0.04
24 13 0.26
25 6 0.12
26 26 0.52
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:63489575 original size:20 final size:20
Alignment explanation
Indices: 63489550--63489602 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
63489540 ATGAATACAA
*
63489550 CATGTGCATTTCATA-CATAT
1 CATGTGCATATCATATCA-AT
63489570 CATGTGCATATCATATCAAT
1 CATGTGCATATCATATCAAT
63489590 CATGT--ATATCATA
1 CATGTGCATATCATA
63489603 GCCCACGTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 8 0.26
20 21 0.68
21 2 0.06
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (20 bp):
CATGTGCATATCATATCAAT
Found at i:63489658 original size:25 final size:25
Alignment explanation
Indices: 63489630--63489677 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
63489620 ATAATTAAAC
* * *
63489630 CCTAAGGGTATAATGGTCATTTTTA
1 CCTAAGGGCAAAATAGTCATTTTTA
*
63489655 CCTAGGGGCAAAATAGTCATTTT
1 CCTAAGGGCAAAATAGTCATTTT
63489678 CATACTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (25 bp):
CCTAAGGGCAAAATAGTCATTTTTA
Found at i:63491470 original size:40 final size:39
Alignment explanation
Indices: 63491353--63491635 Score: 381
Period size: 40 Copynumber: 7.2 Consensus size: 39
63491343 AAACCAAGTA
* * * *
63491353 CCTTCGGGATTTAACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGATATAG-TAACTCGCACAAATG
* *
63491392 TCTTCGGGAC-TAGCCCAGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
* *
63491431 CCTTCGGGACTTAACCCGATTATAGTAACTCGCAGAAATG
1 CCTTCGGGACTTAGCCCGA-TATAGTAACTCGCACAAATG
63491471 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
* * *
63491511 ACTTCAGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
*
63491551 CCTTCGGGACTTAGCTCGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATG
*
63491590 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATG
63491630 CCTTCG
1 CCTTCG
63491636 TTATCATCCG
Statistics
Matches: 217, Mismatches: 21, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
38 5 0.02
39 74 0.34
40 136 0.63
41 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATG
Found at i:63491589 original size:119 final size:119
Alignment explanation
Indices: 63491353--63491634 Score: 417
Period size: 119 Copynumber: 2.4 Consensus size: 119
63491343 AAACCAAGTA
* * * * * *
63491353 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATGTCTTCGGGACTAGCCCAGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGACTTCAGGACTAGCCCAGATATAG
*
63491416 TAACTCGCACAAATGCCTTCGGGACTTAACCCGATTATAGTAACTCGCAGAAATG
65 TAACTCGCACAAATGCCTTCGGGACTTAACCCGATTATAGTAACTCGCACAAATG
*
63491471 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGACTTCAGGACCTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGACTTCAGGA-CTAGCCCAGATATAG
* *
63491536 TAACTCGCACAAATGCCTTCGGGACTTAGCTCGA-TATAGTAACTCGCACAAATG
65 TAACTCGCACAAATGCCTTCGGGACTTAACCCGATTATAGTAACTCGCACAAATG
* *
63491590 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTC
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGACTTC
63491635 GTTATCATCC
Statistics
Matches: 149, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
118 13 0.09
119 91 0.61
120 45 0.30
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGACTTCAGGACTAGCCCAGATATAGT
AACTCGCACAAATGCCTTCGGGACTTAACCCGATTATAGTAACTCGCACAAATG
Found at i:63491612 original size:79 final size:80
Alignment explanation
Indices: 63491353--63491635 Score: 396
Period size: 79 Copynumber: 3.6 Consensus size: 80
63491343 AAACCAAGTA
* * * * *
63491353 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATGTCTTCGGGAC-TAGCCCAGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATA
63491415 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
* * *
63491431 CCTTCGGGACTTAACCC-GATTATAGTAACTCGCAGAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATA
63491495 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
* * * *
63491511 ACTTCAGGACCTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTC-GATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
63491575 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
63491590 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCG
63491636 TTATCATCCG
Statistics
Matches: 183, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
78 15 0.08
79 91 0.50
80 75 0.41
81 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGATATAG
TAACTCGCACAAATG
Found at i:63500560 original size:40 final size:40
Alignment explanation
Indices: 63500467--63500683 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
63500457 AAGCCAAGTA
* * *
63500467 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
63500505 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63500545 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
63500585 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
63500625 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
63500665 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63500684 TTATCATCCA
Statistics
Matches: 162, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 12 0.07
39 17 0.10
40 133 0.82
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63502601 original size:79 final size:80
Alignment explanation
Indices: 63502445--63502700 Score: 358
Period size: 79 Copynumber: 3.2 Consensus size: 80
63502435 TCACATAGCT
* * * * * *
63502445 ACTCGCTCAAATGTCTTCGAGAC-TAACCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
* *
63502509 AACCCGGTTATAGTA
66 AGCCCGGATATAGTA
**
63502524 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGAATTCGGGAC-T
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
63502588 AGCCCGGATATAGTA
66 AGCCCGGATATAGTA
*
63502603 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
*
63502667 AGCCCGGA-ATTAGTC
66 AGCCCGGATA-TAGTA
*
63502682 ACTAGCACAAATGCCTTCG
1 ACTCGCACAAATGCCTTCG
63502701 TTATCATCCG
Statistics
Matches: 158, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
78 5 0.03
79 119 0.75
80 34 0.22
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGATATAGTA
Found at i:63502656 original size:119 final size:118
Alignment explanation
Indices: 63502445--63502694 Score: 367
Period size: 119 Copynumber: 2.1 Consensus size: 118
63502435 TCACATAGCT
* ** *
63502445 ACTCGCTCAAATGTCTTCGAGACTAACCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTA
1 ACTCGCACAAATGAATTCGAGACTAACCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTA
*
63502510 ACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
66 ACCCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGGAAT-TAGTA
* * **
63502564 ACTCGCACAAATGAATTCGGGACTAGCCCGGATATAGTAACTCGTACAAATGCCTTCGGGACTTA
1 ACTCGCACAAATGAATTCGAGACTAACCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTA
* *
63502629 GCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGAATTAGTC
66 ACCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGAATTAGTA
*
63502682 ACTAGCACAAATG
1 ACTCGCACAAATG
63502695 CCTTCGTTAT
Statistics
Matches: 118, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
118 29 0.25
119 89 0.75
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (118 bp):
ACTCGCACAAATGAATTCGAGACTAACCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTA
ACCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGAATTAGTA
Found at i:63502695 original size:39 final size:40
Alignment explanation
Indices: 63502445--63502700 Score: 358
Period size: 40 Copynumber: 6.5 Consensus size: 40
63502435 TCACATAGCT
* * * * *
63502445 ACTCGCTCAAATGTCTTCGAGAC-TAACCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
63502484 ACTCACACAAATGCCTTCGGGACTTAACCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
63502524 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
**
63502564 ACTCGCACAAATGAATTCGGGAC-TAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
63502603 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
63502643 ACTCGCACAAATGCCTTC-GGACTTAGCCCGGA-ATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
*
63502682 ACTAGCACAAATGCCTTCG
1 ACTCGCACAAATGCCTTCG
63502701 TTATCATCCG
Statistics
Matches: 198, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 90 0.45
40 107 0.54
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:63509419 original size:40 final size:40
Alignment explanation
Indices: 63509336--63509488 Score: 152
Period size: 40 Copynumber: 3.8 Consensus size: 40
63509326 TCGAATGATG
* *
63509336 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
63509376 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
63509416 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* *
63509457 -CCGGGCTAAGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
63509489 CGCTATATCC
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
39 2 0.02
40 82 0.86
41 11 0.12
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:63509500 original size:80 final size:80
Alignment explanation
Indices: 63509336--63509488 Score: 186
Period size: 80 Copynumber: 1.9 Consensus size: 80
63509326 TCGAATGATG
*
63509336 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
*
63509401 GTGCGAGTTCCCAAA
66 GAGCGAGTTCCCAAA
* * ** * *
63509416 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGCT-ATTATAACCGGGCTAAG-TCCCGAAGGCT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATAACCGGACTAAGAT-CCGAAGGCA
63509478 TTTGAGCGAGT
63 TTTGAGCGAGT
63509489 CGCTATATCC
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
79 1 0.02
80 53 0.85
81 8 0.13
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAGCGAGTTCCCAAA
Found at i:63516455 original size:40 final size:40
Alignment explanation
Indices: 63516372--63516524 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
63516362 TCGAATGATG
* *
63516372 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
63516412 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
63516452 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
63516493 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
63516525 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:63520290 original size:64 final size:64
Alignment explanation
Indices: 63520187--63520315 Score: 240
Period size: 64 Copynumber: 2.0 Consensus size: 64
63520177 ACTTATTCGA
63520187 GTATGACCATGCATTTCTAGTCTTACTCCATCAAAAGGACTAAGATATTGCTCCCATTATGTAG
1 GTATGACCATGCATTTCTAGTCTTACTCCATCAAAAGGACTAAGATATTGCTCCCATTATGTAG
* *
63520251 GTATGACCATGCATTTCTAGTCTTACTCTATCAAGAGGACTAAGATATTGCTCCCATTATGTAG
1 GTATGACCATGCATTTCTAGTCTTACTCCATCAAAAGGACTAAGATATTGCTCCCATTATGTAG
63520315 G
1 G
63520316 AGGATAAATC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (64 bp):
GTATGACCATGCATTTCTAGTCTTACTCCATCAAAAGGACTAAGATATTGCTCCCATTATGTAG
Found at i:63534732 original size:2 final size:2
Alignment explanation
Indices: 63534725--63534758 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
63534715 GCTCTTGCAC
*
63534725 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
63534759 GTTTGCACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:63535568 original size:40 final size:40
Alignment explanation
Indices: 63535470--63535638 Score: 182
Period size: 40 Copynumber: 4.2 Consensus size: 40
63535460 TCGAATGATC
* * *
63535470 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTACA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTATA
* *
63535511 TCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTAACTATA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACTATA
* * *
63535551 TCCGGGCTAAGTCCCGAAGGCATTTATACTAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
* * * **
63535591 TCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGTGGTTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
63535630 TCC-GGCTAA
1 TCCGGGCTAA
63535639 ACCCCAAAGA
Statistics
Matches: 108, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 6 0.06
39 15 0.14
40 60 0.56
41 26 0.24
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
Found at i:63552542 original size:45 final size:45
Alignment explanation
Indices: 63552471--63552565 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
63552461 ATTGTTTATC
* *
63552471 GAAATATGATATCGGGCTTCGGGCCTAGCAGGCTATGATGCCGGT
1 GAAATATGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGT
* *
63552516 GAAATATTAT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGT
1 GAAATATGATATCGGG-CTTCGAGCCTAGCAGGCTATAATGCCGGT
63552561 GAAAT
1 GAAAT
63552566 GAAATGTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 5 0.11
45 40 0.89
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (45 bp):
GAAATATGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGT
Found at i:63552942 original size:45 final size:45
Alignment explanation
Indices: 63552878--63553454 Score: 878
Period size: 45 Copynumber: 12.9 Consensus size: 45
63552868 GTTGATTTGA
63552878 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
63552923 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
63552968 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
* * *
63553013 TTATTCAGGCTTTTGAGCCTAGCAGGCTATAATGACGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
63553058 TTATTCAGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
1 TTATTC-GGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
* *
63553103 TTATTCCGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAAG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
* *
63553148 TTATTCCGGCCTTTGAGCATAGCAGGCTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
63553193 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
* *
63553238 TTATTCGAGCCTTTGAGCCTAGTAGG-TATAATGCCGGTGAAATG
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
* * * *
63553282 TTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCTGTGAGATA
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
** * *
63553327 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTTGGTGAGATA
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
* * *
63553372 CTATTCGGG-CTTTCGAGCCTAACAGACTATAATGCCGGTGAAATG
1 TTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAAATG
* * **
63553417 ATA-TCGGGCC-TCGAGCCTAGCAGGAGA-AATGCCGGTGA
1 TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
63553455 TTTGAGAAAA
Statistics
Matches: 490, Mismatches: 37, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
42 11 0.02
43 11 0.02
44 53 0.11
45 413 0.84
46 2 0.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (45 bp):
TTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATG
Found at i:63554015 original size:39 final size:39
Alignment explanation
Indices: 63553964--63554041 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
63553954 ACGCTATTGG
63553964 TGTAAGTAAATCCTAGTATTTCAAGTCTATGGCATGTAT
1 TGTAAGTAAATCCTAGTATTTCAAGTCTATGGCATGTAT
63554003 TGTAAGTAAATCCTAGTATTTCAAGTCTATGGCATGTAT
1 TGTAAGTAAATCCTAGTATTTCAAGTCTATGGCATGTAT
63554042 AGGGTTTGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (39 bp):
TGTAAGTAAATCCTAGTATTTCAAGTCTATGGCATGTAT
Found at i:63554028 original size:19 final size:19
Alignment explanation
Indices: 63553967--63554028 Score: 56
Period size: 19 Copynumber: 3.2 Consensus size: 19
63553957 CTATTGGTGT
63553967 AAGTAAATCCTAGTATTTC
1 AAGTAAATCCTAGTATTTC
** *
63553986 AAGTCTATGGC-ATGTATTGT-
1 AAGTAAAT-CCTA-GTATT-TC
63554006 AAGTAAATCCTAGTATTTC
1 AAGTAAATCCTAGTATTTC
63554025 AAGT
1 AAGT
63554029 CTATGGCATG
Statistics
Matches: 32, Mismatches: 6, Indels: 10
0.67 0.12 0.21
Matches are distributed among these distances:
18 1 0.03
19 17 0.53
20 13 0.41
21 1 0.03
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (19 bp):
AAGTAAATCCTAGTATTTC
Found at i:63555886 original size:40 final size:40
Alignment explanation
Indices: 63555841--63556065 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
63555831 CTTGCACAAG
* * *
63555841 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
63555881 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
63555921 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
63555961 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
63556001 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
63556042 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
63556066 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:63563967 original size:40 final size:40
Alignment explanation
Indices: 63563921--63564144 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
63563911 CTTGCACAAG
* * *
63563921 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
63563961 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
63564001 GCCTTCGGG-CTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTC-TTAGCCCGGATATAGTCACTAGCACAAAT
* *
63564041 GCCTTCGGGTCTTAG-CCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
63564080 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
63564121 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
63564145 CATTCGAATA
Statistics
Matches: 159, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 33 0.21
40 95 0.60
41 30 0.19
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:63564017 original size:80 final size:80
Alignment explanation
Indices: 63563885--63564144 Score: 296
Period size: 80 Copynumber: 3.3 Consensus size: 80
63563875 CTCAAGTAAT
* * * * * * *
63563885 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
63563948 CACTAGCATAAATGC
66 CACTAGCACAAATGC
*
63563963 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGG-CTTTAGCCCGGATATA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTC-TTAGCCCGGATATA
* *
63564026 ATCGCTAGCACAAATGC
64 GTCACTAGCACAAATGC
* * * * * *
63564043 CTTCGGGTCTTAG-CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
63564107 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
63564123 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
63564145 CATTCGAATA
Statistics
Matches: 153, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 13 0.08
79 57 0.37
80 75 0.49
81 8 0.05
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:63565931 original size:14 final size:13
Alignment explanation
Indices: 63565907--63565936 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
63565897 CACTGTTTAT
63565907 TAAACTAATTAAC
1 TAAACTAATTAAC
63565920 TAAACATAATTAAC
1 TAAAC-TAATTAAC
63565934 TAA
1 TAA
63565937 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:63572202 original size:18 final size:18
Alignment explanation
Indices: 63572166--63572202 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
63572156 CATTGTAACA
* *
63572166 TCGTGATTTTTGGGTTTT
1 TCGTGATTTTTGAGATTT
63572184 TCGTGATTTTTGAGATTT
1 TCGTGATTTTTGAGATTT
63572202 T
1 T
63572203 GGTAAAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.05, G:0.24, T:0.59
Consensus pattern (18 bp):
TCGTGATTTTTGAGATTT
Found at i:63573965 original size:9 final size:9
Alignment explanation
Indices: 63573948--63574012 Score: 67
Period size: 9 Copynumber: 6.8 Consensus size: 9
63573938 TGGGATTTTA
*
63573948 ATATACATG
1 ATATGCATG
63573957 ATATGCATG
1 ATATGCATG
63573966 ATATGCACATG
1 ATATG--CATG
*
63573977 ATATGTATG
1 ATATGCATG
63573986 ATATGCACATG
1 ATATG--CATG
*
63573997 ATATGTATG
1 ATATGCATG
63574006 ATATGCA
1 ATATGCA
63574013 CATGATGTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
9 30 0.64
11 17 0.36
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (9 bp):
ATATGCATG
Found at i:63573977 original size:20 final size:20
Alignment explanation
Indices: 63573952--63574018 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
63573942 ATTTTAATAT
*
63573952 ACATGATATGCATGATATGC
1 ACATGATATGTATGATATGC
63573972 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63573992 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63574012 ACATGAT
1 ACATGAT
63574019 GTATTCATAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63574032 original size:40 final size:39
Alignment explanation
Indices: 63573952--63574032 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 39
63573942 ATTTTAATAT
*
63573952 ACATGATATGCATGATATGCACATGATATGTATGATATGC
1 ACATGATATGCATGATATGCACATGA-ATGTATCATATGC
*
63573992 ACATGATATGTATGATATGCACATG-ATGTATTCATAATGC
1 ACATGATATGCATGATATGCACATGAATGTA-TCAT-ATGC
63574032 A
1 A
63574033 TTGGGTTAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
38 5 0.14
39 3 0.08
40 29 0.78
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (39 bp):
ACATGATATGCATGATATGCACATGAATGTATCATATGC
Done.