Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 208 of 425
Found at i:63574098 original size:25 final size:24
Alignment explanation
Indices: 63574064--63574122 Score: 84
Period size: 24 Copynumber: 2.4 Consensus size: 24
63574054 GGAGGAAGTG
63574064 CAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTTGCCCCAG-TTAT
63574089 CAAAAGGGC-TTTGCCCCAGTTAT
1 CAAAAGGGCTTTTGCCCCAGTTAT
*
63574112 TAAAAGAGGCT
1 CAAAAG-GGCT
63574123 AGGCCTCCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 9 0.29
24 13 0.42
25 9 0.29
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTTTGCCCCAGTTAT
Found at i:63574106 original size:24 final size:23
Alignment explanation
Indices: 63574064--63574136 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 23
63574054 GGAGGAAGTG
63574064 CAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGC-TTTGCCCCAG-TTAT
63574089 CAAAAGGGCTTTGCCCCAGTTAT
1 CAAAAGGGCTTTGCCCCAGTTAT
* **
63574112 TAAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAG-GGCTTTGCC-CCAGTTAT
63574137 ATGATAAAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
23 9 0.21
24 17 0.40
25 17 0.40
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (23 bp):
CAAAAGGGCTTTGCCCCAGTTAT
Found at i:63581999 original size:9 final size:9
Alignment explanation
Indices: 63581977--63582043 Score: 53
Period size: 9 Copynumber: 7.0 Consensus size: 9
63581967 CATGGGATTT
*
63581977 TGATATACA
1 TGATATGCA
*
63581986 CGATATGCA
1 TGATATGCA
63581995 TGATATGCACA
1 TGATATG--CA
*
63582006 TGATATGTA
1 TGATATGCA
63582015 TGATATGCACA
1 TGATATG--CA
*
63582026 TGATATGTA
1 TGATATGCA
*
63582035 CGATATGCA
1 TGATATGCA
63582044 CATGATGTAT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
9 29 0.63
11 17 0.37
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (9 bp):
TGATATGCA
Found at i:63582009 original size:11 final size:11
Alignment explanation
Indices: 63581993--63582049 Score: 68
Period size: 11 Copynumber: 5.5 Consensus size: 11
63581983 ACACGATATG
63581993 CATGATATGCA
1 CATGATATGCA
63582004 CATGATATG--
1 CATGATATGCA
*
63582013 TATGATATGCA
1 CATGATATGCA
*
63582024 CATGATATGTA
1 CATGATATGCA
63582035 C--GATATGCA
1 CATGATATGCA
63582044 CATGAT
1 CATGAT
63582050 GTATTCATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.42
11 22 0.58
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (11 bp):
CATGATATGCA
Found at i:63582012 original size:20 final size:20
Alignment explanation
Indices: 63581987--63582049 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
63581977 TGATATACAC
*
63581987 GATATGCATGATATGCACAT
1 GATATGTATGATATGCACAT
63582007 GATATGTATGATATGCACAT
1 GATATGTATGATATGCACAT
*
63582027 GATATGTACGATATGCACAT
1 GATATGTATGATATGCACAT
63582047 GAT
1 GAT
63582050 GTATTCATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (20 bp):
GATATGTATGATATGCACAT
Found at i:63582063 original size:40 final size:39
Alignment explanation
Indices: 63581987--63582063 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 39
63581977 TGATATACAC
* *
63581987 GATATGCATGATATGCACATGATATGTATGATATGCACAT
1 GATATGCACGATATGCACATGA-ATGTATCATATGCACAT
*
63582027 GATATGTACGATATGCACATG-ATGTATTCATAATGCA
1 GATATGCACGATATGCACATGAATGTA-TCAT-ATGCA
63582064 TTGGTTTGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 5 0.16
39 3 0.09
40 24 0.75
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (39 bp):
GATATGCACGATATGCACATGAATGTATCATATGCACAT
Found at i:63582165 original size:24 final size:25
Alignment explanation
Indices: 63582095--63582177 Score: 134
Period size: 25 Copynumber: 3.4 Consensus size: 25
63582085 GGAGGAAGTG
63582095 CAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGCTTTTGCCCCAGTTTAT
*
63582120 CAAAAGGGCTTTTGCCCTAGTTTAT
1 CAAAAGGGCTTTTGCCCCAGTTTAT
63582145 CAAAAGGGC-TTTGCCCCAG-TTAT
1 CAAAAGGGCTTTTGCCCCAGTTTAT
*
63582168 TAAAAGGGCT
1 CAAAAGGGCT
63582178 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 12 0.22
24 9 0.17
25 33 0.61
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (25 bp):
CAAAAGGGCTTTTGCCCCAGTTTAT
Found at i:63582187 original size:24 final size:23
Alignment explanation
Indices: 63582108--63582191 Score: 78
Period size: 25 Copynumber: 3.5 Consensus size: 23
63582098 AAGGGCTTTT
**
63582108 GCCCCAGTTTATCAAAAGGGCTTTT
1 GCCCCAG-TTATCAAAAGGGC-TAG
* **
63582133 GCCCTAGTTTATCAAAAGGGCTTT
1 GCCCCAG-TTATCAAAAGGGCTAG
*
63582157 GCCCCAGTTATTAAAAGGGCTAG
1 GCCCCAGTTATCAAAAGGGCTAG
63582180 GCCTCCAGTTAT
1 GCC-CCAGTTAT
63582192 ATGATAAAGC
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
23 16 0.30
24 17 0.32
25 20 0.38
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (23 bp):
GCCCCAGTTATCAAAAGGGCTAG
Found at i:63582421 original size:31 final size:31
Alignment explanation
Indices: 63582386--63582449 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
63582376 CGTTTACAGT
63582386 AAAGGCTTCGGCCCAGTGATATGAAATATGA
1 AAAGGCTTCGGCCCAGTGATATGAAATATGA
*
63582417 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTGATATGAAATATGA
63582448 AA
1 AA
63582450 TATGAGAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAAATATGA
Found at i:63583495 original size:40 final size:40
Alignment explanation
Indices: 63583412--63583586 Score: 228
Period size: 40 Copynumber: 4.4 Consensus size: 40
63583402 TTCTAGCGCA
* * *
63583412 AGCCTACGGGTCTTTAA-CCCGGATACCATTCCAGCACGA-
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-TAT
* * *
63583451 AGCCTGCGGGTCTTTATGCTCAGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
* *
63583491 AGCCTGCAGGCCTTTAAGCCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
** *
63583531 AGCCTATGGGTCTTTAAGCCCGGATACACTTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
63583571 AGCCTGCGGGTCTTTA
1 AGCCTGCGGGTCTTTA
63583587 TACCTGGATA
Statistics
Matches: 116, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 16 0.14
40 100 0.86
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
Found at i:63584878 original size:21 final size:21
Alignment explanation
Indices: 63584853--63584893 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63584843 CGGCAATTTC
63584853 AATTCATACCTTT-CAACCATG
1 AATTCA-ACCTTTACAACCATG
*
63584874 AATTCAACTTTTACAACCAT
1 AATTCAACCTTTACAACCAT
63584894 CATTTAAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (21 bp):
AATTCAACCTTTACAACCATG
Found at i:63591267 original size:40 final size:40
Alignment explanation
Indices: 63591195--63591369 Score: 246
Period size: 40 Copynumber: 4.4 Consensus size: 40
63591185 TTCTAGCGCA
* * *
63591195 AGCCTACGGGTCTTTAA-CCCGGATACCATTCCAGCACGA-
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCA-TAT
*
63591234 AGCCTGCGGGTCTTTATGCCCGGATACAATTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
* *
63591274 AGCCTGCGGGTCTTTAAGCCCAGATACAATTCTAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
* *
63591314 AGCCTGCGGGTCTTTAAGCTCGGATACACTTCCAGCATAT
1 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
*
63591354 AGCCTGCGGGTTTTTA
1 AGCCTGCGGGTCTTTA
63591370 TACCCGTATA
Statistics
Matches: 122, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.13
40 106 0.87
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCATAT
Found at i:63594329 original size:30 final size:30
Alignment explanation
Indices: 63594293--63594393 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
63594283 GACAAGATTG
* * *
63594293 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
63594323 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
63594351 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
63594380 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63594394 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:63594405 original size:29 final size:28
Alignment explanation
Indices: 63594322--63594397 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
63594312 AAAATTGTAC
* *
63594322 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
63594350 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
63594379 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
63594398 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:63596593 original size:40 final size:40
Alignment explanation
Indices: 63596497--63596608 Score: 143
Period size: 40 Copynumber: 2.8 Consensus size: 40
63596487 CGAATGGTAT
* * * * *
63596497 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAAA
* * *
63596538 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAA
63596578 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
63596609 CTATTATAAC
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 37 0.61
41 24 0.39
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAAA
Found at i:63596620 original size:40 final size:38
Alignment explanation
Indices: 63596497--63596642 Score: 134
Period size: 40 Copynumber: 3.7 Consensus size: 38
63596487 CGAATGGTAT
* *
63596497 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAA
* *
63596537 TCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 -CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAG-TA-CTAAA
* *
63596578 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTA-AA
*
63596618 CCGGGCTATA-TCCCGAAGGCTTTTG
1 CCGGGCTA-AGTCCCGAAGGCATTTG
63596643 AGTGAGTCGC
Statistics
Matches: 89, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
39 1 0.01
40 57 0.64
41 31 0.35
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (38 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
Found at i:63598993 original size:21 final size:21
Alignment explanation
Indices: 63598968--63599008 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
63598958 CGACAATTTC
63598968 AATTCATACCTTT-CAACCATG
1 AATTCA-ACCTTTACAACCATG
*
63598989 AATTCAACTTTTACAACCAT
1 AATTCAACCTTTACAACCAT
63599009 CATTTAAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.37, C:0.27, G:0.02, T:0.34
Consensus pattern (21 bp):
AATTCAACCTTTACAACCATG
Found at i:63611467 original size:34 final size:34
Alignment explanation
Indices: 63611398--63611467 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
63611388 GTATTTCTGT
*
63611398 TACTGTTACTGAGATGGGCTAAGGCCCACATTGA
1 TACTGTTACTGAGATGGGCTAAGGCCCACACTGA
***
63611432 TACTGTTACTGTTTTGGGCTAAGGCCCTA-ACTGA
1 TACTGTTACTGAGATGGGCTAAGGCCC-ACACTGA
63611466 TA
1 TA
63611468 TTGAACTGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 30 0.97
35 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (34 bp):
TACTGTTACTGAGATGGGCTAAGGCCCACACTGA
Found at i:63618286 original size:19 final size:19
Alignment explanation
Indices: 63618245--63618286 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
63618235 GCTATTTTGC
*
63618245 ATAAGTTGTAAAATAGATT
1 ATAAGTTGTAAAATAGATG
*
63618264 ATAAGTGTGTGAAATAG-TG
1 ATAAGT-TGTAAAATAGATG
63618283 ATAA
1 ATAA
63618287 TTTGGAGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.33
Consensus pattern (19 bp):
ATAAGTTGTAAAATAGATG
Found at i:63618875 original size:47 final size:44
Alignment explanation
Indices: 63618762--63618887 Score: 137
Period size: 47 Copynumber: 2.7 Consensus size: 44
63618752 TCACTTATGC
* *
63618762 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCAG-C-CATTAAGA
* *
63618808 GAGCTAATGTAAGACCATGTCTGGGACCTGGCATCAG-CATTAAGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCATTAAGA
*
63618853 CGAGCGCTAGTGTAAGATATGTCTGGGACATGCAT
1 -GA--GCTAGTGTAAGACATGTCTGGGACATGCAT
63618888 TGGCTACAAG
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
45 7 0.10
46 19 0.28
47 25 0.37
48 17 0.25
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATTAAGA
Found at i:63621266 original size:180 final size:179
Alignment explanation
Indices: 63620964--63621506 Score: 739
Period size: 180 Copynumber: 3.0 Consensus size: 179
63620954 TCCGAGATCT
* * * * ** *
63620964 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCGGATCTGTCAGACAGTGAAACAGGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGAACTATTGGACAGTGAAACAAGGGTA
* * * *
63621029 TCTTTAATGAATAAACCGTACTAATTCGCTAAACCAAAAATT-TTGAAAATTTTATGGTAAGAAT
66 TCTTTAATGAATAAACTGTATTAATTGGCTAAA-TAAAAATTCTT-AAAATTTTATGGTAAGAAT
*
63621093 ATATGTGAGTCTAGTTT-TGGGGAAAATTAGTGGTTCTTAATTTGGAGTCCC
129 ATATGTGAGTCTAGTTTCT-AGGAAAATTAGTGGTTCTTAATTTGGAGTCCC
* * *
63621144 GTACCATGAGTTAAATAATTTTTAGTGAAGAGAGGTCGGACCTATTGGACAGTGAAATAAGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGAACTATTGGACAGTGAAACAAGGGTA
** *
63621209 AATTTAATGAATAAACTATATTAATTGGCTAAATAAAAAATTCTTAAAATTTTATGGTAAGAATA
66 TCTTTAATGAATAAACTGTATTAATTGGCTAAAT-AAAAATTCTTAAAATTTTATGGTAAGAATA
* * * * *
63621274 TATGTGAGTTTGGTTTCTTGAAAAATTAGTGGTTCTTAATTTGGAGTCCT
130 TATGTGAGTCTAGTTTCTAGGAAAATTAGTGGTTCTTAATTTGGAGTCCC
* * * *
63621324 GTACCATGAGATAAATAATATTTAGTGAAGAGAGGTCGAAACTTTTGGACAATGAAACAAGGGTA
1 GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGAACTATTGGACAGTGAAACAAGGGTA
*
63621389 TCTTTAATGAATAAACTGTATTAATTGGCTAAACTAAAAATTCTAAAAATTTTATGGTAAGAATA
66 TCTTTAATGAATAAACTGTATTAATTGGCTAAA-TAAAAATTCTTAAAATTTTATGGTAAGAATA
* * * *
63621454 TATGTGAGTCTAGTTTCTAAGAAAATTAATGGATCTTAATTTGGAGTTCC
130 TATGTGAGTCTAGTTTCTAGGAAAATTAGTGGTTCTTAATTTGGAGTCCC
63621504 GTA
1 GTA
63621507 GCTCCAGCTA
Statistics
Matches: 318, Mismatches: 41, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
180 314 0.99
181 4 0.01
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (179 bp):
GTACCATGAGATAAATAATTTTTAGTGAAGAGAGGTCGGAACTATTGGACAGTGAAACAAGGGTA
TCTTTAATGAATAAACTGTATTAATTGGCTAAATAAAAATTCTTAAAATTTTATGGTAAGAATAT
ATGTGAGTCTAGTTTCTAGGAAAATTAGTGGTTCTTAATTTGGAGTCCC
Found at i:63629102 original size:38 final size:37
Alignment explanation
Indices: 63629051--63629125 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 37
63629041 TGTTGGAAAG
63629051 GCTTACCGATTTATTAAATGAACTTACTAGCTTTATTC
1 GCTTACCGATTTATTAAATGAACTTACTAGC-TTATTC
*
63629089 GCTTACCGATTTATTAAGTGAACTTACTAGCTTATTC
1 GCTTACCGATTTATTAAATGAACTTACTAGCTTATTC
63629126 AAGCATACCT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 6 0.17
38 30 0.83
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.41
Consensus pattern (37 bp):
GCTTACCGATTTATTAAATGAACTTACTAGCTTATTC
Found at i:63630379 original size:40 final size:40
Alignment explanation
Indices: 63630314--63630410 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
63630304 CGGTTATTTG
* *
63630314 TGGCACTTAGTATGCGATACGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATACAACATAGCTTCGGCTATATA
* * * *
63630354 TGGCACTTAGTGTGTGATTCAACATAGCTTTGGCTATGTA
1 TGGCACTTAGTGTGCGATACAACATAGCTTCGGCTATATA
* *
63630394 CGACACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
63630411 GATATCGAGT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATACAACATAGCTTCGGCTATATA
Found at i:63630435 original size:28 final size:28
Alignment explanation
Indices: 63630395--63630450 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
63630385 GGCTATGTAC
*
63630395 GACACTTAGTGTGCGAGATATCGAGTAT
1 GACACTTAGTGTGCGAGACATCGAGTAT
* *
63630423 GACACTTAGTGTGTGAGACATTGAGTAT
1 GACACTTAGTGTGCGAGACATCGAGTAT
63630451 TCAACAGCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (28 bp):
GACACTTAGTGTGCGAGACATCGAGTAT
Found at i:63631706 original size:21 final size:18
Alignment explanation
Indices: 63631668--63631722 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 18
63631658 GGAAGAATAA
63631668 AGAAATGAAAAAAAAAAG
1 AGAAATGAAAAAAAAAAG
63631686 AGAATATGAAGAAAAACAAAG
1 AGAA-ATGAA-AAAAA-AAAG
63631707 A-AAA-GAAAAAAAAAAG
1 AGAAATGAAAAAAAAAAG
63631723 TGTTCATTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.12
17 5 0.15
18 7 0.21
19 6 0.18
20 7 0.21
21 5 0.15
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.05
Consensus pattern (18 bp):
AGAAATGAAAAAAAAAAG
Found at i:63632914 original size:29 final size:29
Alignment explanation
Indices: 63632881--63632963 Score: 141
Period size: 29 Copynumber: 2.9 Consensus size: 29
63632871 GTGACGAGAT
63632881 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
63632910 TGGCACTAAGTGTG-GATGCTGGAAATATA
1 TGGCACTAAGTGTGCG-TGCTGGAAATATA
*
63632939 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCGTGCTGGAAA
63632964 AAAATACGGC
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
28 1 0.02
29 50 0.98
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:63633004 original size:60 final size:58
Alignment explanation
Indices: 63632877--63633014 Score: 145
Period size: 60 Copynumber: 2.4 Consensus size: 58
63632867 TACGGTGACG
* * * *
63632877 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGGATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGGATGCTCGAA
* **
63632934 ATATATGGCACTAAGTGTGCATGCTGGAAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG--AAAAATACGGCACTAAGTGTG-GATGCTCGAA
* * *
63632994 GGGTATGGCACTATGTGTGCA
1 AGATATGGCACTAAGTGTGCA
63633015 GGCTTAAATC
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
57 3 0.05
58 21 0.32
60 40 0.61
61 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.33, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGGATGCTCGAA
Found at i:63649115 original size:39 final size:39
Alignment explanation
Indices: 63649061--63649139 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
63649051 ATGGGTTAAA
63649061 ATGCAAAGTTCCCTAAATATGTGTTCATGGATTATTTTG
1 ATGCAAAGTTCCCTAAATATGTGTTCATGGATTATTTTG
63649100 ATGCAAAGTTCCCTAAATATGTGTTCATGGATTATTTTG
1 ATGCAAAGTTCCCTAAATATGTGTTCATGGATTATTTTG
63649139 A
1 A
63649140 ATGAAATGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.41
Consensus pattern (39 bp):
ATGCAAAGTTCCCTAAATATGTGTTCATGGATTATTTTG
Found at i:63649498 original size:44 final size:43
Alignment explanation
Indices: 63649436--63649562 Score: 134
Period size: 44 Copynumber: 3.0 Consensus size: 43
63649426 GACATTGATC
* * *
63649436 TGAGATATCGTGTAAGACCGTGTCTAGGACACAGGCCTCGATT
1 TGAGATTTCGTGTAAGACCATGTCTAGGACACAGGCATCGATT
*
63649479 TGAGATTTACGTGTAAGACCATGTC-AGGGACATAGGCATCGTATT
1 TGAGATTT-CGTGTAAGACCATGTCTA-GGACACAGGCATCG-ATT
* * * *
63649524 T-A-ATTTTGTGTAAGACCCTGTCTGGGACAGAGGCATCGA
1 TGAGATTTCGTGTAAGACCATGTCTAGGACACAGGCATCGA
63649563 AGCTGAATTA
Statistics
Matches: 72, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.38
43 12 0.17
44 28 0.39
45 4 0.06
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (43 bp):
TGAGATTTCGTGTAAGACCATGTCTAGGACACAGGCATCGATT
Found at i:63649551 original size:42 final size:44
Alignment explanation
Indices: 63649436--63649562 Score: 136
Period size: 42 Copynumber: 3.0 Consensus size: 44
63649426 GACATTGATC
* * * *
63649436 TGAGATAT-CGTGTAAGACCGTGTCTAGGACACAGGCCTCGATT
1 TGAGATTTACGTGTAAGACCATGTCTGGGACACAGGCATCGATT
* *
63649479 TGAGATTTACGTGTAAGACCATGTCAGGGACATAGGCATCGTATT
1 TGAGATTTACGTGTAAGACCATGTCTGGGACACAGGCATCG-ATT
* * *
63649524 T-A-ATTT-TGTGTAAGACCCTGTCTGGGACAGAGGCATCGA
1 TGAGATTTACGTGTAAGACCATGTCTGGGACACAGGCATCGA
63649563 AGCTGAATTA
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
41 1 0.01
42 28 0.39
43 11 0.15
44 28 0.39
45 4 0.06
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (44 bp):
TGAGATTTACGTGTAAGACCATGTCTGGGACACAGGCATCGATT
Found at i:63653955 original size:12 final size:12
Alignment explanation
Indices: 63653934--63653963 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
63653924 ATTGTGCCAC
*
63653934 TTCTTGGATATG
1 TTCTTTGATATG
63653946 TTCTTTGATATG
1 TTCTTTGATATG
63653958 TTCTTT
1 TTCTTT
63653964 ACCCAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.10, G:0.17, T:0.60
Consensus pattern (12 bp):
TTCTTTGATATG
Found at i:63655647 original size:16 final size:16
Alignment explanation
Indices: 63655626--63655662 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
63655616 GACTGAATTG
63655626 AATAATGTGTGTATTA
1 AATAATGTGTGTATTA
63655642 AATAATGTGTGTATTA
1 AATAATGTGTGTATTA
63655658 AATAA
1 AATAA
63655663 GCTAAATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.41
Consensus pattern (16 bp):
AATAATGTGTGTATTA
Found at i:63660180 original size:21 final size:23
Alignment explanation
Indices: 63660135--63660183 Score: 75
Period size: 21 Copynumber: 2.2 Consensus size: 23
63660125 ATGATGTATG
63660135 ATTTGGTTATAAAATGGTTGAGA
1 ATTTGGTTATAAAATGGTTGAGA
*
63660158 ATTTGG-TATAAAAT-GTTGTGA
1 ATTTGGTTATAAAATGGTTGAGA
63660179 ATTTG
1 ATTTG
63660184 ATGCTAGTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 11 0.44
22 8 0.32
23 6 0.24
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (23 bp):
ATTTGGTTATAAAATGGTTGAGA
Found at i:63666879 original size:42 final size:42
Alignment explanation
Indices: 63666833--63666947 Score: 133
Period size: 42 Copynumber: 2.7 Consensus size: 42
63666823 ATATATGTTA
*
63666833 TCGTGTAAGACCATGTCTAGGACATTGGCATC-ATACTTGATT
1 TCGTGTAAGACCATGTCTGGGAC-TTGGCATCGATACTTGATT
* * * *
63666875 TCGTGTAAGACCCTGTTTGGGACTTGGCAACGATATTTGATT
1 TCGTGTAAGACCATGTCTGGGACTTGGCATCGATACTTGATT
* * *
63666917 ACGTATAAGACCACGTCTGGGACGTTGGCAT
1 TCGTGTAAGACCATGTCTGGGAC-TTGGCAT
63666948 TGTACGAGCT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 7 0.12
42 47 0.78
43 6 0.10
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACTTGGCATCGATACTTGATT
Found at i:63672636 original size:18 final size:16
Alignment explanation
Indices: 63672605--63672638 Score: 50
Period size: 18 Copynumber: 2.0 Consensus size: 16
63672595 TGATTGGGTA
63672605 TTTGGTGGGAATGAAG
1 TTTGGTGGGAATGAAG
63672621 TTTGAGTGGTGAATGAAG
1 TTTG-GTGG-GAATGAAG
63672639 GAATTAGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 4 0.25
18 8 0.50
ACGTcount: A:0.26, C:0.00, G:0.41, T:0.32
Consensus pattern (16 bp):
TTTGGTGGGAATGAAG
Found at i:63673107 original size:29 final size:30
Alignment explanation
Indices: 63673050--63673107 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
63673040 CTTTTGAAAA
* * *
63673050 TATTTACAAAAAGAGGCATCTAATTTTTAT
1 TATTTACAAAAAGAGGCAACAAAATTTTAT
63673080 TATTTACAAAAAGA-GCAACAAAATTTTA
1 TATTTACAAAAAGAGGCAACAAAATTTTA
63673108 AAAATAATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.47, C:0.10, G:0.09, T:0.34
Consensus pattern (30 bp):
TATTTACAAAAAGAGGCAACAAAATTTTAT
Found at i:63677150 original size:13 final size:12
Alignment explanation
Indices: 63677134--63677180 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 12
63677124 ATGATAATAG
63677134 AATAATATGAAGT
1 AATAATAT-AAGT
63677147 AATAATATAA-T
1 AATAATATAAGT
63677158 AA-AATATAAGT
1 AATAATATAAGT
63677169 AAATAATTATAA
1 -AATAA-TATAA
63677181 AATATATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 7 0.23
11 4 0.13
12 4 0.13
13 10 0.33
14 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (12 bp):
AATAATATAAGT
Found at i:63677188 original size:23 final size:22
Alignment explanation
Indices: 63677137--63677186 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
63677127 ATAATAGAAT
63677137 AATATGAAGTAATAATATAATAA
1 AATAT-AAGTAATAATATAATAA
63677160 AATATAAGTAAATAAT-T-ATAA
1 AATATAAGT-AATAATATAATAA
63677181 AATATA
1 AATATA
63677187 TATAATACGT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 10 0.38
22 5 0.19
23 11 0.42
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (22 bp):
AATATAAGTAATAATATAATAA
Found at i:63679285 original size:206 final size:206
Alignment explanation
Indices: 63679016--63681013 Score: 3366
Period size: 206 Copynumber: 9.7 Consensus size: 206
63679006 AAATCTGCTT
* * * * * *
63679016 CTTCAATTTGTTCTCTGCCAATACAAAGATGCCAACTCATCTTAGATTTGTTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
63679081 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
63679146 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
63679211 GAGACGCCAAA
196 GAGACGCCAAA
* * *
63679222 TTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGGGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
63679287 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* *
63679352 GGATCTGCTTTAGTCTAATCATCAGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
63679417 GAGACGCCAAA
196 GAGACGCCAAA
63679428 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
63679493 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
63679558 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
63679623 GAGACGCCAAA
196 GAGACGCCAAA
* *
63679634 CTTCTATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAT
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* * * * *
63679699 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * ** * * *
63679764 GGATCTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTGTCTACTCTCCGTCAAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
*
63679829 GAGATGCCAAA
196 GAGACGCCAAA
* *
63679840 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
*
63679905 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCATTGTAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* *
63679970 GGATCTGCTTCAGTCTAATCATCTAAAGGTTAGATCTGCTATGTGTCTACCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
*
63680035 GAGATGCCAAA
196 GAGACGCCAAA
* * *
63680046 CTTCAATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
*
63680111 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTATAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
*
63680176 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
63680241 GAGACGCCAAA
196 GAGACGCCAAA
*
63680252 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* *
63680317 GCGAAAACCAAATCAGCTATGTCTTTGATTTCCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* *
63680382 GGATCTACTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCATCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
*
63680447 GAGACACCAAA
196 GAGACGCCAAA
* *
63680458 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACATGCTTCAGCCTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
63680523 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* *
63680588 GGATCTGCTTCAGTCTAATCATCAGAAGGTTCGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
63680653 GAGACGCCAAA
196 GAGACGCCAAA
63680664 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* * * *
63680729 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
* * * ** * * *
63680794 GGATTTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAACATG
131 GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
63680859 GAGACGCCAAA
196 GAGACGCCAAA
* * * *
63680870 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCATCGTACGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
* * * *
63680935 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
63681000 GGATCTTGCTTCAG
131 GGATC-TGCTTCAG
63681014 CCAAATCTGC
Statistics
Matches: 1688, Mismatches: 103, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
206 1680 1.00
207 8 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAGCGTAAGCAC
GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGGATACCAAACCATCTT
GGATCTGCTTCAGTCTAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCCCTCCGTCGAATATG
GAGACGCCAAA
Found at i:63693297 original size:89 final size:93
Alignment explanation
Indices: 63693102--63693303 Score: 202
Period size: 89 Copynumber: 2.2 Consensus size: 93
63693092 AATAATGTGA
* *
63693102 ATAATATACCTAAGAAATAT-ATATAATAGATAATAATATGAAATAATATATGGTTAAAATGTAC
1 ATAATATA-ATAA-AAATATAATATAATAGATAATAATATGAAATAATATATGGTTAAAATATAC
*
63693166 AATAATATAATAATATAAAAATATATAAAT
64 AATAATATAATAATAGAAAAATATATAAAT
* * * * * * * *
63693196 ATTATGTGATAAAAATATAATATAATAGATAAT-A-A-GTAATGATATAT-GTTAAATTATATAT
1 ATAATATAATAAAAATATAATATAATAGATAATAATATGAAATAATATATGGTTAAAATATACAA
* **
63693257 TAATATGATAATAGAAAAATATGA-AGTT
66 TAATATAATAATAGAAAAATAT-ATAAAT
63693285 ATAATATAAT-AAAATATAA
1 ATAATATAATAAAAATATAA
63693304 GTAAATAATT
Statistics
Matches: 89, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
88 9 0.10
89 39 0.44
90 11 0.12
91 1 0.01
92 7 0.08
93 17 0.19
94 5 0.06
ACGTcount: A:0.56, C:0.01, G:0.08, T:0.35
Consensus pattern (93 bp):
ATAATATAATAAAAATATAATATAATAGATAATAATATGAAATAATATATGGTTAAAATATACAA
TAATATAATAATAGAAAAATATATAAAT
Found at i:63693311 original size:23 final size:20
Alignment explanation
Indices: 63693272--63693323 Score: 59
Period size: 23 Copynumber: 2.4 Consensus size: 20
63693262 TGATAATAGA
*
63693272 AAAATATGAAGTTATAATATAAT
1 AAAATAT-AAGTAATAAT-T-AT
63693295 AAAATATAAGTAAATAATTAT
1 AAAATATAAGT-AATAATTAT
63693316 AAAATATA
1 AAAATATA
63693324 TATAATACGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 10 0.37
22 5 0.19
23 12 0.44
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33
Consensus pattern (20 bp):
AAAATATAAGTAATAATTAT
Found at i:63696650 original size:27 final size:27
Alignment explanation
Indices: 63696620--63696817 Score: 227
Period size: 27 Copynumber: 7.3 Consensus size: 27
63696610 TACTGAAATG
* *
63696620 CCCTTGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
63696647 CCCTTGATTTGTAGAATTACCGTTTCA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
63696674 CCCTCGATTTACAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
63696701 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
63696728 CCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* *
63696755 CCCTCGATTTAAAAAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * * *
63696782 CCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTATAGAATTACCATTTTA
63696809 CCCTCGATT
1 CCCTCGATT
63696818 GTGAAATTAC
Statistics
Matches: 151, Mismatches: 18, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:63696692 original size:54 final size:54
Alignment explanation
Indices: 63696634--63696817 Score: 271
Period size: 54 Copynumber: 3.4 Consensus size: 54
63696624 TGATTTGTAG
* * * * *
63696634 AATTACCATTTTACCCTTGATTTGTAGAATTACCGTTTCACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
*
63696688 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
* *
63696742 AATTACCGTTTTACCCTCGATTTAAAAAATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAA
*
63696796 AATTATCGTTTTACCCTCGATT
1 AATTACCGTTTTACCCTCGATT
63696818 GTGAAATTAC
Statistics
Matches: 119, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
53 1 0.01
54 118 0.99
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (54 bp):
AATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAA
Found at i:63696737 original size:81 final size:81
Alignment explanation
Indices: 63696620--63696817 Score: 272
Period size: 81 Copynumber: 2.4 Consensus size: 81
63696610 TACTGAAATG
* * * **
63696620 CCCTTGATTTGTAGAATTACCATTTTACCCTTGATTTGTAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
* *
63696685 CAAAATTACCGTTTTA
66 AAAAATTACCATTTTA
*
63696701 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
1 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
63696766 AAAAATTACCATTTTA
66 AAAAATTACCATTTTA
* * * *
63696782 CCCTC-AGTTTACAAAATTATCGTTTTACCCTCGATT
1 CCCTCGA-TTTATAGAATTACCATTTTACCCTCGATT
63696818 GTGAAATTAC
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 1 0.01
81 103 0.99
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTA
AAAAATTACCATTTTA
Found at i:63696839 original size:27 final size:26
Alignment explanation
Indices: 63696809--63696999 Score: 147
Period size: 27 Copynumber: 7.1 Consensus size: 26
63696799 TATCGTTTTA
* *
63696809 CCCTCGATTGTGAAATTACTAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
*
63696836 CCCTG-TAGGATAAAATTACCAAAATAC
1 CCCTGAT-TG-TAAAATTACCAAAATAC
*
63696863 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
63696890 CCCTAGTTTGTAAAATTACCGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * * * *
63696917 CACTGGTTTGTGAAATTATCGAAATA-
1 CCCT-GATTGTAAAATTACCAAAATAC
*
63696943 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTAAAATTACCAAAATAC
63696971 CCCTGATT-TACAAAATTA-CAGAAATAC
1 CCCTGATTGT--AAAATTACCA-AAATAC
63696998 CC
1 CC
63697000 TTGACTTTCT
Statistics
Matches: 138, Mismatches: 17, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
25 2 0.01
26 9 0.07
27 120 0.87
28 6 0.04
29 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:63696890 original size:54 final size:52
Alignment explanation
Indices: 63696816--63696999 Score: 181
Period size: 54 Copynumber: 3.4 Consensus size: 52
63696806 TTACCCTCGA
* * **
63696816 TTGTGAAATTACTAAAATACCCCTGTAGGATAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTGTTTG-TAAAATTACCAAAATACCCCT-GT
* *
63696870 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTACCAAAATACCCCT-GT
* * * **
63696924 TTGTGAAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCC-CTGTTTGTAAAATTACCAAAATACCCCTG-T
**
63696978 TTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCA-AAATACCC
63697000 TTGACTTTCT
Statistics
Matches: 108, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
53 2 0.02
54 102 0.94
55 4 0.04
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.29
Consensus pattern (52 bp):
TTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTACCAAAATACCCCTGT
Found at i:63696942 original size:81 final size:81
Alignment explanation
Indices: 63696848--63696998 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
63696838 CTGTAGGATA
* ** *
63696848 AAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCG
1 AAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACAG
63696911 AAATACCACTGGTTTGTG
64 AAATACCACTGGTTTGTG
* *
63696929 AAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAA
63696994 ATACC
66 ATACC
63696999 CTTGACTTTC
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
81 60 0.97
82 2 0.03
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (81 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAA
ATACCACTGGTTTGTG
Found at i:63697050 original size:27 final size:27
Alignment explanation
Indices: 63696846--63697065 Score: 181
Period size: 27 Copynumber: 8.1 Consensus size: 27
63696836 CCCTGTAGGA
* *
63696846 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCGAAATACCCCTGGTTTG
* *
63696873 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCGAAATACCCCTGGTTTG
*
63696900 TAAAATTACCGAAATACCACTGGTTTG
1 TAAAATTACCGAAATACCCCTGGTTTG
* * **
63696927 TGAAATTATCGAAATA-CCCTCAATTTG
1 TAAAATTACCGAAATACCCCT-GGTTTG
* * *
63696954 TAAAATTACCAAAATACCCCTGATTTA
1 TAAAATTACCGAAATACCCCTGGTTTG
* * * * *
63696981 CAAAATTACAGAAATACCCTTGACTTTC
1 TAAAATTACCGAAATACCCCTG-GTTTG
** ** *
63697009 TAAAAATTATGGAAATACCATTGGTTTA
1 T-AAAATTACCGAAATACCCCTGGTTTG
* * *
63697037 TAAAATTACTGAAATATCCTTGGTTTG
1 TAAAATTACCGAAATACCCCTGGTTTG
63697064 TA
1 TA
63697066 GATTTACCAA
Statistics
Matches: 159, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.02
27 127 0.80
28 11 0.07
29 18 0.11
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCCTGGTTTG
Found at i:63697995 original size:25 final size:25
Alignment explanation
Indices: 63697957--63698026 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
63697947 AGGAAGTGCT
* *
63697957 AAAAGGGCTCTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCA
* * *
63697982 AAAATGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTACCA
63698007 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCTAGTT
63698027 ATTAAAGGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:63698221 original size:42 final size:42
Alignment explanation
Indices: 63698174--63698309 Score: 245
Period size: 42 Copynumber: 3.2 Consensus size: 42
63698164 TAGTCTCCCC
63698174 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
63698216 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
* *
63698258 AAATGGTCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
63698300 ACATGGGCTT
1 AAATGGGCTT
63698310 AAGGGCCATA
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:63698366 original size:31 final size:31
Alignment explanation
Indices: 63698331--63698445 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
63698321 CGTTTACAGT
*
63698331 AAAGGTTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
63698362 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
63698393 AAAGGCTTTGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
63698424 GAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
63698446 TCAAGACTAA
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
30 5 0.06
31 72 0.94
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:63699408 original size:2 final size:2
Alignment explanation
Indices: 63699401--63699433 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
63699391 GGTGTCAACT
63699401 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
63699434 GTTAAGCTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:63702452 original size:40 final size:40
Alignment explanation
Indices: 63702403--63702569 Score: 194
Period size: 40 Copynumber: 4.2 Consensus size: 40
63702393 TCTTCGGAAT
* * *
63702403 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
63702442 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
63702482 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
63702522 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
63702562 TTAGCCCG
1 TTAGCCCG
63702570 TGTATCATTC
Statistics
Matches: 106, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 3 0.03
40 102 0.96
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:63706756 original size:27 final size:27
Alignment explanation
Indices: 63706726--63706778 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
63706716 GCATCTAATA
*
63706726 CTGATTCTA-TATTGGGCTTAGGCCCAC
1 CTGATTCTATTAATGGGC-TAGGCCCAC
63706753 CTGATTCTATTAATGGGCTAGGCCCA
1 CTGATTCTATTAATGGGCTAGGCCCA
63706779 ACTGTAACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGATTCTATTAATGGGCTAGGCCCAC
Found at i:63710565 original size:27 final size:27
Alignment explanation
Indices: 63710534--63710586 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
63710524 GCATCTGATA
*
63710534 CTGATTCTG-TATTGGGCTCAGGCCCAC
1 CTGATTCTGTTAATGGGCT-AGGCCCAC
63710561 CTGATTCTGTTAATGGGCTAGGCCCA
1 CTGATTCTGTTAATGGGCTAGGCCCA
63710587 ACTGTAATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.17, C:0.26, G:0.26, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTTAATGGGCTAGGCCCAC
Found at i:63712695 original size:40 final size:40
Alignment explanation
Indices: 63712640--63712807 Score: 248
Period size: 40 Copynumber: 4.2 Consensus size: 40
63712630 CAATTGAATG
*
63712640 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
63712680 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
63712720 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
** *
63712760 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
63712800 ATATCCGG
1 ATATCCGG
63712808 TTGTATCCGA
Statistics
Matches: 118, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 3 0.03
40 115 0.97
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:63716158 original size:27 final size:26
Alignment explanation
Indices: 63716121--63716231 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 26
63716111 AGCATGGCTG
* *
63716121 CCAGAACAGATGATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGTCA
63716147 CCAGATACAGATAATCGTGGCAGA-TCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGT-CA
*
63716175 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGTCA
* * *
63716202 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGTCA
63716229 CCA
1 CCA
63716232 AGACGCTTCC
Statistics
Matches: 74, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGTCA
Found at i:63716212 original size:54 final size:54
Alignment explanation
Indices: 63716121--63716231 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 54
63716111 AGCATGGCTG
* *
63716121 CCAGAACAGATGATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGATCCA
1 CCAGAACAGATGATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * *
63716175 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAT-GATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
63716229 CCA
1 CCA
63716232 AGACGCTTCC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATGATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:63718811 original size:27 final size:27
Alignment explanation
Indices: 63718773--63718832 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
63718763 AGTTGGGCAA
*
63718773 AATGACCGTAATACCCCTATATGGTAG
1 AATGACCGTAATACCCCTATATGATAG
63718800 AATGACCGTAATACCCCTATATGATAG
1 AATGACCGTAATACCCCTATATGATAG
63718827 AATGAC
1 AATGAC
63718833 GATTATGCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.25
Consensus pattern (27 bp):
AATGACCGTAATACCCCTATATGATAG
Found at i:63726292 original size:14 final size:14
Alignment explanation
Indices: 63726273--63726300 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63726263 TTGTAGCCCT
63726273 TTTTAATATGTACA
1 TTTTAATATGTACA
63726287 TTTTAATATGTACA
1 TTTTAATATGTACA
63726301 AAATAACCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (14 bp):
TTTTAATATGTACA
Found at i:63727574 original size:30 final size:30
Alignment explanation
Indices: 63727538--63727595 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
63727528 GTAGTGATAT
*
63727538 ACTCATACATCAAAGCTTCTGCACGTGGAC
1 ACTCATACATCAAAGCCTCTGCACGTGGAC
*
63727568 ACTCATACATCAGAGCCTCTGCACGTGG
1 ACTCATACATCAAAGCCTCTGCACGTGG
63727596 TAGGGTGTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (30 bp):
ACTCATACATCAAAGCCTCTGCACGTGGAC
Found at i:63729385 original size:46 final size:46
Alignment explanation
Indices: 63729281--63729404 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
63729271 GGTCATTTGT
* * *
63729281 GAGAGCTAGTGTAAGACCATGTCTGGGACACGGCACCAGCATTGAGAC
1 GAGAGCTAGTGTAAGA-CATGTCGGGGACA-TGCACCAGCATCGAGAC
* * *
63729329 GAGTGCTAGTGTAAGACATGTCGGGGACATGCATCAGCCTCGAGAC
1 GAGAGCTAGTGTAAGACATGTCGGGGACATGCACCAGCATCGAGAC
63729375 GTA-AGCTAGTGTAAGACATGT-GTGGGACAT
1 G-AGAGCTAGTGTAAGACATGTCG-GGGACAT
63729405 ACGTTGGCTA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
45 1 0.01
46 38 0.57
47 13 0.19
48 15 0.22
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.20
Consensus pattern (46 bp):
GAGAGCTAGTGTAAGACATGTCGGGGACATGCACCAGCATCGAGAC
Found at i:63730282 original size:74 final size:74
Alignment explanation
Indices: 63730161--63730311 Score: 293
Period size: 74 Copynumber: 2.0 Consensus size: 74
63730151 GTAAGTAAGG
63730161 GTGGTAAAAAGGCTTGGTAAATAGCCTGATCTTGTCCACACGGGTAGACACATGGGCGTGTGTCT
1 GTGGTAAAAAGGCTTGGTAAATAGCCTGATCTTGTCCACACGGGTAGACACATGGGCGTGTGTCT
*
63730226 AGGCCGTGT
66 AGGACGTGT
63730235 GTGGTAAAAAGGCTTGGTAAATAGCCTGATCTTGTCCACACGGGTAGACACATGGGCGTGTGTCT
1 GTGGTAAAAAGGCTTGGTAAATAGCCTGATCTTGTCCACACGGGTAGACACATGGGCGTGTGTCT
63730300 AGGACGTGT
66 AGGACGTGT
63730309 GTG
1 GTG
63730312 ACACACGGCC
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (74 bp):
GTGGTAAAAAGGCTTGGTAAATAGCCTGATCTTGTCCACACGGGTAGACACATGGGCGTGTGTCT
AGGACGTGT
Found at i:63730452 original size:13 final size:13
Alignment explanation
Indices: 63730434--63730458 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63730424 TGGCCTTGCG
63730434 AAGGACACAGGCC
1 AAGGACACAGGCC
63730447 AAGGACACAGGC
1 AAGGACACAGGC
63730459 GTGTGCCAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.28, G:0.32, T:0.00
Consensus pattern (13 bp):
AAGGACACAGGCC
Found at i:63736300 original size:46 final size:46
Alignment explanation
Indices: 63736200--63736364 Score: 149
Period size: 46 Copynumber: 3.5 Consensus size: 46
63736190 TGTGAGAGCT
* * * * *
63736200 AGTGTAAGACTATGTTTGGGACACGACATCTGC-ATTGAGATGAGT-GCT
1 AGTGTAAGAC-ATGTCTGGGACATG-CATCGGCTA-TGAGACGA-TAGCC
*
63736248 AGTGTAAGACATGTCTAGGACATGCATCGGCCT-TGAGACG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGACGAT-AGCC
* * * *
63736294 AGTGTAAGACATGTCTGGGACATGCGTTGGCTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGACGATAGCC
63736340 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
63736365 GCTTTGACTT
Statistics
Matches: 99, Mismatches: 11, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 58 0.59
47 28 0.28
48 10 0.10
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.26
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGACGATAGCC
Found at i:63736378 original size:47 final size:48
Alignment explanation
Indices: 63736248--63736419 Score: 178
Period size: 47 Copynumber: 3.7 Consensus size: 48
63736238 GATGAGTGCT
* * * **
63736248 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCT-TGAGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCAT-TGACTATGAGATATAAGCC
* * *
63736294 AGTGTAAGA-CATGTCTGGGACAT-GCGTTGGCTATGAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGACTATGAGAT-ATAAGCC
*
63736340 AGTGTAAGACCATGTCTGGGACATGGCTTTGACT-TGAGATATAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGACTATGAGATATAAGCC
* *
63736387 AGTGTAAAACCGTGTCTGGGACATGGCATTGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGAC
63736420 ACCTTACCCC
Statistics
Matches: 108, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
45 3 0.03
46 44 0.41
47 54 0.50
48 7 0.06
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGACTATGAGATATAAGCC
Found at i:63737370 original size:21 final size:22
Alignment explanation
Indices: 63737312--63737371 Score: 95
Period size: 22 Copynumber: 2.8 Consensus size: 22
63737302 GGTGGAGGAG
63737312 ATGGGCGTGTTGCCCCTCCCAC
1 ATGGGCGTGTTGCCCCTCCCAC
* *
63737334 ACGGGCATGTTGCCCCTCCCAC
1 ATGGGCGTGTTGCCCCTCCCAC
63737356 ATGGGCGTG-TGCCCCT
1 ATGGGCGTGTTGCCCCT
63737372 GTGCCTCGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 7 0.21
22 27 0.79
ACGTcount: A:0.10, C:0.40, G:0.28, T:0.22
Consensus pattern (22 bp):
ATGGGCGTGTTGCCCCTCCCAC
Found at i:63738936 original size:39 final size:39
Alignment explanation
Indices: 63738892--63738968 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
63738882 TTTTTCTCCA
*
63738892 AAACATTGATCTCTAATTCTTTTTCTTAAATCCAATTGT
1 AAACATTAATCTCTAATTCTTTTTCTTAAATCCAATTGT
63738931 AAACATTAATCTCTAATTCTTTTTCTTAAATCCAATTG
1 AAACATTAATCTCTAATTCTTTTTCTTAAATCCAATTG
63738969 CATCTCTTCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.32, C:0.18, G:0.04, T:0.45
Consensus pattern (39 bp):
AAACATTAATCTCTAATTCTTTTTCTTAAATCCAATTGT
Found at i:63740452 original size:16 final size:16
Alignment explanation
Indices: 63740433--63740463 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63740423 CTTCTTCACG
63740433 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
63740449 TACTTACTTACTTAA
1 TACTCACTTACTTAA
63740464 TAAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:63740783 original size:53 final size:54
Alignment explanation
Indices: 63740662--63740908 Score: 226
Period size: 55 Copynumber: 4.6 Consensus size: 54
63740652 ACCTTACCGT
* * *
63740662 TGCCATGACTT-ATCATGGTCTTACTTGGTATCC-T---TT-TGAAACTTACCAC
1 TGCCATGCCTTGA-CATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAA
* *
63740711 TGCCATGTCTTGACATGGTCTTACATGGTATGCTTGCCTTATG-AA-TTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTT-ACCAA
* * * * *
63740764 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTGTAGTAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTTACCAA
* * * *
63740819 TGCCATGTCTTGACATGGTCTTACATGATTTCCGTGCCTTA-GAAACCTTACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTTACCAA
* *
63740873 TTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
63740909 AAACCCTAAT
Statistics
Matches: 159, Mismatches: 25, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
49 28 0.18
50 2 0.01
52 3 0.02
53 46 0.29
54 10 0.06
55 66 0.42
56 4 0.03
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAA
Found at i:63740845 original size:108 final size:109
Alignment explanation
Indices: 63740701--63740898 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 109
63740691 ATCCTTTTGA
* * * *
63740701 AACTTACCACTGCCATGTCTTGACATGGTCTTACATGGTATGCTTGCCTTATG-AA-TTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCGTGCCTTA-GAAACTT-ACCAA
63740764 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTGTAGT
64 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTGTAGT
* *
63740809 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCGTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCGTGCCTTAGAAA-CTTACCAAT
63740874 TGCCATGCCTTGGCATGGTCTTACA
65 TGCCATGCCTTGGCATGGTCTTACA
63740899 CGGTATCCTT
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
107 1 0.01
108 47 0.59
109 5 0.06
110 27 0.34
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCGTGCCTTAGAAACTTACCAATT
GCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTGTAGT
Found at i:63747957 original size:16 final size:16
Alignment explanation
Indices: 63747938--63747968 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
63747928 CTTCTTCACT
63747938 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
63747954 TACTTACTTACTTAA
1 TACTCACTTACTTAA
63747969 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:63747974 original size:20 final size:20
Alignment explanation
Indices: 63747935--63747974 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
63747925 AAACTTCTTC
* *
63747935 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
63747955 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
63747975 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:63748287 original size:53 final size:54
Alignment explanation
Indices: 63748160--63748413 Score: 231
Period size: 53 Copynumber: 4.8 Consensus size: 54
63748150 ACGCGGGTAC
* * * * *
63748160 CTTACCATTTCCATGACTTGTCATGGTCTTACATGGTA---TT--CTTTTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
63748209 CTTACCATTGCCATGTCTTGACATGGTATTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
63748262 CTCACCAATGCCATGCCTTGGCATGGTCTTACATAGG-A-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACAT-GGTATCC-TTGCCTTAT-GAAA
* * * * *
63748317 CTTATCAATGCCATGTCTTGACATGGTC-TACATGATTTCCTTACCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
63748369 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
63748414 AAACCCTAAT
Statistics
Matches: 167, Mismatches: 24, Indels: 22
0.78 0.11 0.10
Matches are distributed among these distances:
49 34 0.20
52 7 0.04
53 49 0.29
54 37 0.22
55 40 0.24
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:63748377 original size:108 final size:109
Alignment explanation
Indices: 63748207--63748404 Score: 285
Period size: 108 Copynumber: 1.8 Consensus size: 109
63748197 ATTCTTTTGA
* * * *
63748207 AACTTACCATTGCCATGTCTTGACATGGTATTACATGGTATCCTTGCCTTATGAACTCACCAA-T
1 AACTTACCAATGCCATGTCTTGACATGGTACTACATGATATCCTTACCTTATGAACTCACCAATT
63748271 GCCATGCCTTGGCATGGTCTTACATAGGACCTTTGCCTTATAGT
66 GCCATGCCTTGGCATGGTCTTACATAGGACCTTTGCCTTATAGT
* * *
63748315 AACTTATCAATGCCATGTCTTGACATGGT-CTACATGATTTCCTTACCTTA-GAAACCTTACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTACTACATGATATCCTTACCTTATG-AA-CTCACCAA
*
63748378 TTTCCATGCCTTGGCATGGTCTTACAT
64 TTGCCATGCCTTGGCATGGTCTTACAT
63748405 GGTATCCTTA
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
106 1 0.01
107 19 0.24
108 34 0.43
109 25 0.32
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (109 bp):
AACTTACCAATGCCATGTCTTGACATGGTACTACATGATATCCTTACCTTATGAACTCACCAATT
GCCATGCCTTGGCATGGTCTTACATAGGACCTTTGCCTTATAGT
Found at i:63751482 original size:20 final size:20
Alignment explanation
Indices: 63751457--63751524 Score: 127
Period size: 20 Copynumber: 3.4 Consensus size: 20
63751447 TGAGGGGCAG
63751457 GGGCGTGTCCCCAAGCACAC
1 GGGCGTGTCCCCAAGCACAC
*
63751477 GGGCGTGTCCCCAAGCACAT
1 GGGCGTGTCCCCAAGCACAC
63751497 GGGCGTGTCCCCAAGCACAC
1 GGGCGTGTCCCCAAGCACAC
63751517 GGGCGTGT
1 GGGCGTGT
63751525 GCTTTGCCTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.18, C:0.35, G:0.34, T:0.13
Consensus pattern (20 bp):
GGGCGTGTCCCCAAGCACAC
Found at i:63755178 original size:40 final size:39
Alignment explanation
Indices: 63755101--63755321 Score: 257
Period size: 40 Copynumber: 5.6 Consensus size: 39
63755091 AAACCAAGTA
* * * * *
63755101 CCTTCGGAATTTAGCCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCGGTTATAG-TAACTCGCACAAATG
63755140 CCTTCGGGACTTAGTCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGTTATAGTAACTCGCACAAATG
* *
63755180 CCTTTGGGACTTAGCTCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGC-CGGTTATAGTAACTCGCACAAATG
*
63755220 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGTTATAGTAACTCGCACAAATG
* ** * *
63755260 CCTTCGGG-CTTAGCCCGAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCGGTTA-TAGTAACTCGCACAAATG
63755299 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAG-CCGGTTAT
63755322 CATCCGAATA
Statistics
Matches: 158, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 5 0.03
39 43 0.27
40 105 0.66
41 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGTTATAGTAACTCGCACAAATG
Found at i:63755312 original size:119 final size:119
Alignment explanation
Indices: 63755101--63755321 Score: 295
Period size: 119 Copynumber: 1.9 Consensus size: 119
63755091 AAACCAAGTA
* * * * **
63755101 CCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGTCCGGTTATAGT
1 CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGT
* * *
63755166 AACTCGCACAAATGCCTTTGGGACTTAGCTCGGTTATAGTAACTCACACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
*
63755220 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGAA-ATT
1 CCTTCGGAACTTAG-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATA-T
*
63755282 AGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63755322 CATCCGAATA
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
118 1 0.01
119 58 0.66
120 29 0.33
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (119 bp):
CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATG
Found at i:63763158 original size:40 final size:40
Alignment explanation
Indices: 63763114--63763300 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
63763104 GCTACTTGCT
63763114 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
63763154 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
63763194 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
63763234 CAAATGCCTTCGGG-CTTAGCCCGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
63763272 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
63763301 CATCCGAATA
Statistics
Matches: 137, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
38 24 0.18
39 21 0.15
40 92 0.67
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:63764832 original size:40 final size:40
Alignment explanation
Indices: 63764787--63764953 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
63764777 CGGAATATAA
63764787 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
63764827 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
63764867 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
63764907 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
63764946 CCGGATAT
1 CCGGATAT
63764954 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:63771710 original size:39 final size:39
Alignment explanation
Indices: 63771653--63771899 Score: 306
Period size: 39 Copynumber: 6.3 Consensus size: 39
63771643 AAGCCAAGTA
* * * *
63771653 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCGAATG
1 CCTTCGGGACTTAGCCGGATATAGCTACTCGCACAAATG
* *
63771692 CCTTCGGGACATAGCCGGATATAG-TAACTCGCACCAATG
1 CCTTCGGGACTTAGCCGGATATAGCT-ACTCGCACAAATG
*
63771731 CCTT-GGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGCTACTCGCACAAATG
*
63771770 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGCTACTCGCACAAATG
63771810 CCTTCGGGACTTAGCCGGATATAG-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGCT-ACTCGCACAAATG
* * *
63771849 CCTTCGGGACTTAGCCCGA-ACTAG-TCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCGGATA-TAGCT-ACTCGCACAAATG
63771888 CCTTCGGGACTT
1 CCTTCGGGACTT
63771900 GCCCGGTTAT
Statistics
Matches: 189, Mismatches: 13, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
38 10 0.05
39 130 0.69
40 49 0.26
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGCTACTCGCACAAATG
Found at i:63771832 original size:79 final size:79
Alignment explanation
Indices: 63771653--63771899 Score: 333
Period size: 79 Copynumber: 3.2 Consensus size: 79
63771643 AAGCCAAGTA
* * * * * * *
63771653 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAG-CCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGC
*
63771717 AACTCGCACCAATG
66 AACTCGCACAAATG
63771731 CCTT-GGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
63771795 CAACTCGCACAAATG
65 CAACTCGCACAAATG
*
63771810 CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GA-ACTAG
1 CCTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAG
* *
63771873 TC-ACTAGCGCAAATG
65 -CAACTCGCACAAATG
63771888 CCTTCGGGACTT
1 CCTTCGGGACTT
63771900 GCCCGGTTAT
Statistics
Matches: 153, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
77 8 0.05
78 67 0.44
79 69 0.45
80 9 0.06
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGC
AACTCGCACAAATG
Found at i:63771886 original size:118 final size:118
Alignment explanation
Indices: 63771653--63771905 Score: 363
Period size: 118 Copynumber: 2.2 Consensus size: 118
63771643 AAGCCAAGTA
* * * * *
63771653 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGCCGGATATAGT
* *
63771717 AACTCGCACCAATGCCTTGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
66 AACTCGCACAAATGCCTTGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
63771770 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAGT
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGCCGGATATAGT
*
63771835 AACTCGCACAAATGCCTTCGGGACTTAGCCC-GA-ACTAGTC-ACTAGCGCAAATG
66 AACTCGCACAAATGCCTT-GGGACTTAGCCCGGATA-TAG-CAACTAGCACAAATG
63771888 CCTTCGGGACTT-GCCCGG
1 CCTTCGGGACTTAGCCCGG
63771906 TTATCATCCA
Statistics
Matches: 123, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
117 19 0.15
118 91 0.74
119 13 0.11
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (118 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACATAGCCGGATATAGT
AACTCGCACAAATGCCTTGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:63779964 original size:40 final size:40
Alignment explanation
Indices: 63779894--63780151 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
63779884 AAGCCAAGTA
* * * *
63779894 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
63779933 CCTTCGGGACATAGCCCGAATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
63779973 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63780013 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
63780053 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
63780093 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATC
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
63780133 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63780152 TTATCATCCA
Statistics
Matches: 201, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.06
40 188 0.94
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:63786949 original size:64 final size:64
Alignment explanation
Indices: 63786868--63787051 Score: 176
Period size: 67 Copynumber: 2.8 Consensus size: 64
63786858 AGACATTCTG
* * *
63786868 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
63786932 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGATAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGAGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63786997 AA
63 AA
* * * *
63786999 ACTG--GCTAGGTCACATGAGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
63787052 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.17
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63789079 original size:41 final size:42
Alignment explanation
Indices: 63789018--63789170 Score: 193
Period size: 42 Copynumber: 3.6 Consensus size: 42
63789008 TAAGACTACC
* *
63789018 TGTAAGACCATATCTAGGATATGGCATCG-TATGGGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
*
63789059 TGTAAGACCATATCTGGGATATGGCGTCGATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * * *
63789101 TGTAAGACCATAGCT-GGACTATTTGCATAGATATGAGATTACA
1 TGTAAGACCATATCTGGGA-TA-TGGCATCGATATGAGATTTCA
* *
63789144 TGTAATACCATATTTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
63789171 TGGTATGGTA
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
41 30 0.31
42 32 0.33
43 31 0.32
44 3 0.03
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:63794609 original size:40 final size:40
Alignment explanation
Indices: 63794552--63794809 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
63794542 TGGATGATAA
* *
63794552 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAG-TGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTA-TAT
*
63794592 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
63794632 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
63794672 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
63794712 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * *
63794752 CCGGGCTATGTCCCGAAGGCATTCGAGCGAGTAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
63794792 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
63794810 TACTTGGCTT
Statistics
Matches: 202, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
39 14 0.07
40 186 0.92
41 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:63805905 original size:21 final size:20
Alignment explanation
Indices: 63805876--63805914 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
63805866 CGTACTTCGG
*
63805876 AAATAGGGCCTCGATGGGCCA
1 AAATAGGGCC-CAATGGGCCA
*
63805897 AAATTGGGCCCAATGGGC
1 AAATAGGGCCCAATGGGC
63805915 TTACGACCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.28, C:0.23, G:0.33, T:0.15
Consensus pattern (20 bp):
AAATAGGGCCCAATGGGCCA
Found at i:63809327 original size:23 final size:23
Alignment explanation
Indices: 63809301--63809348 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
63809291 TAATAGTATA
*
63809301 TATGTTAATTTTAAAGTTATAAT
1 TATGTAAATTTTAAAGTTATAAT
63809324 TATGTAAATTTTAAAGTTATAAT
1 TATGTAAATTTTAAAGTTATAAT
63809347 TA
1 TA
63809349 AGTGAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (23 bp):
TATGTAAATTTTAAAGTTATAAT
Found at i:63811951 original size:40 final size:40
Alignment explanation
Indices: 63811906--63812035 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
63811896 CGGAATACAA
63811906 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
63811946 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
63811986 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
63812026 CCGGATATAA
1 CCGGATATAA
63812036 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:63816632 original size:43 final size:43
Alignment explanation
Indices: 63816582--63816668 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
63816572 ATTTGTGATT
**
63816582 TCGATATGTGTTTACGA-GTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATGTGGCTAC-ATGTAAGACCGC-GTCTGGGAC-GTTGGCA
63816625 TCGATATGTGGCTACATGTAAGACCGCGTCTGGGACGTTGGCA
1 TCGATATGTGGCTACATGTAAGACCGCGTCTGGGACGTTGGCA
63816668 T
1 T
63816669 TGTACGATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 36 0.92
44 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.28
Consensus pattern (43 bp):
TCGATATGTGGCTACATGTAAGACCGCGTCTGGGACGTTGGCA
Found at i:63824941 original size:27 final size:26
Alignment explanation
Indices: 63824900--63824984 Score: 98
Period size: 27 Copynumber: 3.2 Consensus size: 26
63824890 GAGGAAGCGT
* *
63824900 TCTGATGGCTATGCCACAAATATCTGC
1 TCTGGTGGCTATGCCAC-AATATCTGA
*
63824927 TCTGGTGGCTCTGCCACAATATCTGTA
1 TCTGGTGGCTATGCCACAATATCTG-A
* * *
63824954 TCTGGTGACTTTGCCACAATATCTGT
1 TCTGGTGGCTATGCCACAATATCTGA
63824980 TCTGG
1 TCTGG
63824985 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 13 0.25
27 38 0.75
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (26 bp):
TCTGGTGGCTATGCCACAATATCTGA
Found at i:63832810 original size:27 final size:26
Alignment explanation
Indices: 63832738--63832852 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 26
63832728 TGGAGGAAGC
* *
63832738 GTTCTGATAGCTATGCCACAAATATCT
1 GTTCTGGTAGCTCTGCCAC-AATATCT
*
63832765 GTTTCTGGTGGCTAC-GCCACAAATATCT
1 G-TTCTGGTAGCT-CTGCCAC-AATATCT
63832793 GTTCTGGTAGCTCTGCCACAATATCT
1 GTTCTGGTAGCTCTGCCACAATATCT
* *
63832819 ATATCTGGT-GACTCTGTCACAATATCT
1 GT-TCTGGTAG-CTCTGCCACAATATCT
63832846 GTTCTGG
1 GTTCTGG
63832853 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 15 0.20
27 38 0.50
28 23 0.30
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (26 bp):
GTTCTGGTAGCTCTGCCACAATATCT
Found at i:63834204 original size:34 final size:34
Alignment explanation
Indices: 63834161--63834229 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
63834151 GTTTCTATGT
*
63834161 AGGCTATTATGATTTATATACATGAGTTAAGTTG
1 AGGCTATTATGATATATATACATGAGTTAAGTTG
63834195 AGGCTATTATGATATATATACATGAGTTAAGTTG
1 AGGCTATTATGATATATATACATGAGTTAAGTTG
63834229 A
1 A
63834230 TTACATGTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.06, G:0.20, T:0.39
Consensus pattern (34 bp):
AGGCTATTATGATATATATACATGAGTTAAGTTG
Found at i:63837713 original size:42 final size:42
Alignment explanation
Indices: 63837666--63837769 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 42
63837656 TGACATTAGG
* * *
63837666 GTTATGAG-TTTACGTGTTAGACCATATCTAGGATATGGCATA
1 GTTATGAGATTT-CGTGTAAGAACATATCTAGGACATGGCATA
* * *
63837708 GTTATGAGATTTCGTGTAAGAACATGTCTGGGACATGGCATC
1 GTTATGAGATTTCGTGTAAGAACATATCTAGGACATGGCATA
* *
63837750 GATATGAGA-ATCGTGTAAGA
1 GTTATGAGATTTCGTGTAAGA
63837770 CCGTAGCTGG
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
41 10 0.19
42 40 0.75
43 3 0.06
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.32
Consensus pattern (42 bp):
GTTATGAGATTTCGTGTAAGAACATATCTAGGACATGGCATA
Found at i:63843625 original size:39 final size:39
Alignment explanation
Indices: 63843463--63843612 Score: 273
Period size: 39 Copynumber: 3.8 Consensus size: 39
63843453 ATTTGATGTG
63843463 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
63843502 TATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
63843541 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
63843580 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTG
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTG
63843613 AAAATATGTC
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 107 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:63843639 original size:39 final size:39
Alignment explanation
Indices: 63843463--63843643 Score: 175
Period size: 39 Copynumber: 4.6 Consensus size: 39
63843453 ATTTGATGTG
** * * *
63843463 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGAAAATA
** * * * *
63843502 TATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGAAAATA
** * * *
63843541 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGAAAATA
*
63843580 TATCCGGACTTAAGGTCCGCAGGCTACGTGCTGAAAATA
1 TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGAAAATA
* *
63843619 TGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATCCGGACTTAAAGT-CCGCAGGCT
63843644 TCGAGCTGGT
Statistics
Matches: 132, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
38 5 0.04
39 127 0.96
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGAAAATA
Found at i:63843659 original size:78 final size:78
Alignment explanation
Indices: 63843463--63843643 Score: 247
Period size: 78 Copynumber: 2.3 Consensus size: 78
63843453 ATTTGATGTG
** * *
63843463 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGTAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
* * *
63843528 TGTGCTGGAATTA
66 CGTGCTGAAAATA
**
63843541 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
1 TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
63843606 CGTGCTGAAAATA
66 CGTGCTGAAAATA
* *
63843619 TGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATCCGGACTTAAAGT-CCGCAGGCT
63843644 TCGAGCTGGT
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 4 0.04
78 89 0.96
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGTCCGCAGGCTA
CGTGCTGAAAATA
Found at i:63851985 original size:17 final size:17
Alignment explanation
Indices: 63851963--63851996 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
63851953 TAAAAGGGTT
63851963 AATTTTGAATACGTATA
1 AATTTTGAATACGTATA
63851980 AATTTTGAATACGTATA
1 AATTTTGAATACGTATA
63851997 GATCAAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (17 bp):
AATTTTGAATACGTATA
Found at i:63864443 original size:29 final size:27
Alignment explanation
Indices: 63864410--63864470 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 27
63864400 TGAATGTAAC
*
63864410 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAACGGG-CATATAAATATGA-T
* *
63864439 TGGGCCTAATGGGCATATGAATATGAT
1 TGGGCCTAACGGGCATATAAATATGAT
63864466 TGGGC
1 TGGGC
63864471 TTCATGGGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 6 0.21
28 11 0.38
29 12 0.41
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (27 bp):
TGGGCCTAACGGGCATATAAATATGAT
Found at i:63864477 original size:27 final size:28
Alignment explanation
Indices: 63864410--63864479 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 28
63864400 TGAATGTAAC
* *
63864410 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGG-CATATAAATATGATT
*
63864439 TGGGCCTAATGGGCATATGAATATGA-T
1 TGGGCCTAATGGGCATATAAATATGATT
* *
63864466 TGGGCTTCATGGGC
1 TGGGCCTAATGGGC
63864480 CAGATACAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
27 13 0.36
28 11 0.31
29 12 0.33
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (28 bp):
TGGGCCTAATGGGCATATAAATATGATT
Found at i:63869234 original size:40 final size:40
Alignment explanation
Indices: 63869175--63869280 Score: 142
Period size: 39 Copynumber: 2.7 Consensus size: 40
63869165 CAATTGAATG
* * *
63869175 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACT
* * *
63869215 ATATCCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACT
*
63869254 ACATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
63869281 CGTGCATGTG
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 34 0.60
40 23 0.40
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACT
Found at i:63877254 original size:40 final size:40
Alignment explanation
Indices: 63877142--63877269 Score: 157
Period size: 40 Copynumber: 3.2 Consensus size: 40
63877132 CAATTGAATG
* * * * *
63877142 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* *
63877182 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * *
63877222 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
63877262 ATATCCGG
1 ATATCCGG
63877270 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
Found at i:63883969 original size:29 final size:29
Alignment explanation
Indices: 63883936--63884019 Score: 96
Period size: 29 Copynumber: 2.9 Consensus size: 29
63883926 ATGTAACTGG
63883936 GCCTAACGGGCCATATAAATGTGATTTGA
1 GCCTAACGGGCCATATAAATGTGATTTGA
* * * *
63883965 GCCTAACGGGCCATATACAGGTGGTTTGG
1 GCCTAACGGGCCATATAAATGTGATTTGA
* * * *
63883994 GCCTAATGGGTCATATGAATATGATT
1 GCCTAACGGGCCATATAAATGTGATT
63884020 GGGCTTAATG
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (29 bp):
GCCTAACGGGCCATATAAATGTGATTTGA
Found at i:63884009 original size:58 final size:57
Alignment explanation
Indices: 63883933--63884043 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
63883923 TGAATGTAAC
* *
63883933 TGGGCCTAACGGGCCATATAAATGTGATTTGAGCCTAACGGGCCATATACAGGTGGTT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGAGCCTAACGGGCCAGATACAGGTGGTT
* * * * * *
63883991 TGGGCCTAATGGGTCATATGAATATGATTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGAGCCTAACGGGCCAGATACAGGT
63884044 ATGTGAATTT
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 22 0.49
58 23 0.51
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGAGCCTAACGGGCCAGATACAGGTGGTT
Found at i:63886245 original size:42 final size:42
Alignment explanation
Indices: 63886143--63886305 Score: 193
Period size: 42 Copynumber: 3.8 Consensus size: 42
63886133 TTCCGATAAG
* * * * **
63886143 TGATTTCGTGTAAGATCACGTTTGGGATGTTGGCATCG-ATT
1 TGATTTCGTGTAAGACCATGTCTGAGACATTGGCATCGTATT
*
63886184 TGGGATTTACGTGTAAGACCATGTCTAAGACATTGGCATCGTATT
1 T--GATTT-CGTGTAAGACCATGTCTGAGACATTGGCATCGTATT
**
63886229 TGATTTCGTGTAAGACCATGTCTGAGACATTGATATCGTATT
1 TGATTTCGTGTAAGACCATGTCTGAGACATTGGCATCGTATT
* *
63886271 TGATTTCGTGTAAGACCCTGTCTGAGACAGTGGCA
1 TGATTTCGTGTAAGACCATGTCTGAGACATTGGCA
63886306 CCAATACTTG
Statistics
Matches: 104, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
41 1 0.01
42 64 0.62
43 10 0.10
44 25 0.24
45 4 0.04
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGAGACATTGGCATCGTATT
Found at i:63890002 original size:33 final size:33
Alignment explanation
Indices: 63889951--63890047 Score: 91
Period size: 33 Copynumber: 3.1 Consensus size: 33
63889941 CATGCATTAC
**
63889951 CAGTCTGGGCCTGGGCCCTATTCAGTATCAGTA
1 CAGTCTGGGCCTAAGCCCTATTCAGTATCAGTA
*
63889984 CAGTCTGGGCCTTAGCCCT-TTACA--AT-A--A
1 CAGTCTGGGCCTAAGCCCTATT-CAGTATCAGTA
* *
63890012 CAGTGT-GGCCTAAGCCCAATTCAGTATCAGTA
1 CAGTCTGGGCCTAAGCCCTATTCAGTATCAGTA
63890044 CAGT
1 CAGT
63890048 GTAGACATGT
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
27 12 0.23
28 8 0.15
29 2 0.04
30 2 0.04
31 2 0.04
32 7 0.13
33 19 0.37
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (33 bp):
CAGTCTGGGCCTAAGCCCTATTCAGTATCAGTA
Found at i:63890253 original size:28 final size:26
Alignment explanation
Indices: 63890189--63890254 Score: 62
Period size: 28 Copynumber: 2.4 Consensus size: 26
63890179 AGCAATGTTG
*
63890189 CTAATAACAGTAAACGTGGCAAAGCCA
1 CTAAT-ACAGTAAACGTGGAAAAGCCA
* *
63890216 CCAGA-GCAGTAATTACGTGGAAAAGCCA
1 CTA-ATACAGTAA--ACGTGGAAAAGCCA
63890244 CTAATACAGTA
1 CTAATACAGTA
63890255 CTTCCTCCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
26 6 0.20
27 3 0.10
28 21 0.70
ACGTcount: A:0.42, C:0.21, G:0.20, T:0.17
Consensus pattern (26 bp):
CTAATACAGTAAACGTGGAAAAGCCA
Found at i:63896986 original size:19 final size:19
Alignment explanation
Indices: 63896943--63896986 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
63896933 GGGACTAAAT
* *
63896943 TGAAAAGTTGTAAAATTTA
1 TGAAAAATTCTAAAATTTA
*
63896962 TGGAAAAATTCTAAATTTTA
1 T-GAAAAATTCTAAAATTTA
63896982 TGAAA
1 TGAAA
63896987 TACATGGGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (19 bp):
TGAAAAATTCTAAAATTTA
Found at i:63898985 original size:38 final size:39
Alignment explanation
Indices: 63898933--63899075 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
63898923 GAATGTTCGA
63898933 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
63898972 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63899010 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63899049 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
63899076 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:63899021 original size:77 final size:79
Alignment explanation
Indices: 63898934--63899115 Score: 269
Period size: 77 Copynumber: 2.3 Consensus size: 79
63898924 AATGTTCGAG
63898934 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
63898997 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
63899011 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
63899076 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
63899090 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
63899116 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:63906921 original size:39 final size:39
Alignment explanation
Indices: 63906867--63907010 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
63906857 GAATGTTCGA
63906867 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
63906906 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63906945 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
63906984 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
63907011 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:63906957 original size:78 final size:79
Alignment explanation
Indices: 63906868--63907050 Score: 269
Period size: 78 Copynumber: 2.3 Consensus size: 79
63906858 AATGTTCGAG
63906868 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
63906932 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* *
63906946 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
** *
63907011 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
63907025 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
63907051 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 9, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
78 53 0.56
79 32 0.34
80 9 0.10
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:63910711 original size:27 final size:26
Alignment explanation
Indices: 63910676--63910787 Score: 152
Period size: 27 Copynumber: 4.2 Consensus size: 26
63910666 AGCATGGCTG
* *
63910676 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
63910702 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
63910730 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
63910757 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
63910784 CCAG
1 CCAG
63910788 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
26 6 0.08
27 55 0.71
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:63910740 original size:54 final size:54
Alignment explanation
Indices: 63910676--63910787 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
63910666 AGCATGGCTG
*
63910676 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
63910730 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
63910784 CCAG
1 CCAG
63910788 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:63911233 original size:16 final size:17
Alignment explanation
Indices: 63911196--63911236 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
63911186 TCTTAAAATG
*
63911196 CCGGCTTTTTGGCATTT
1 CCGGCTTTTCGGCATTT
*
63911213 -TGGCTTTTCGGC-TTT
1 CCGGCTTTTCGGCATTT
63911228 CCGGCTTTT
1 CCGGCTTTT
63911237 GCCGATCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
15 3 0.15
16 17 0.85
ACGTcount: A:0.02, C:0.24, G:0.24, T:0.49
Consensus pattern (17 bp):
CCGGCTTTTCGGCATTT
Found at i:63912255 original size:24 final size:24
Alignment explanation
Indices: 63912220--63912296 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
63912210 CCAACACCGT
*
63912220 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
63912244 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
63912268 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
63912292 TCTCC
1 TCTCC
63912297 TGACAGCCTT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:63930773 original size:27 final size:27
Alignment explanation
Indices: 63930743--63930859 Score: 162
Period size: 27 Copynumber: 4.3 Consensus size: 27
63930733 TACTGAAATG
* * * *
63930743 CCCTCAATTTGTAAAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
*
63930770 CCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
63930797 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
* * *
63930824 CCCTTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCATTTTA
63930851 CCCTCGATT
1 CCCTCGATT
63930860 GTGAAATTAC
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.27, C:0.25, G:0.09, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCATTTTA
Found at i:63930815 original size:54 final size:54
Alignment explanation
Indices: 63930743--63930859 Score: 180
Period size: 54 Copynumber: 2.2 Consensus size: 54
63930733 TACTGAAATG
* * *
63930743 CCCTCAATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
* * *
63930797 CCCTCGATTTATAGAATTACCATTTTACCCTTGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
63930851 CCCTCGATT
1 CCCTCGATT
63930860 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.27, C:0.25, G:0.09, T:0.39
Consensus pattern (54 bp):
CCCTCGATTTATAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTA
Found at i:63930921 original size:27 final size:27
Alignment explanation
Indices: 63930858--63931041 Score: 205
Period size: 27 Copynumber: 6.8 Consensus size: 27
63930848 TTACCCTCGA
* *
63930858 TTGTGAAATTACTAAAATACCCTT-GT
1 TTGTAAAATTACCAAAATACCCTTAGT
** *
63930884 AGGATAGAATTACCAAAATACCCTTAGT
1 TTG-TAAAATTACCAAAATACCCTTAGT
63930912 TTGTAAAATTACCAAAATACTCC-TAGT
1 TTGTAAAATTACCAAAATAC-CCTTAGT
63930939 TTGTAAAATTACCAAAATACCCTTAGT
1 TTGTAAAATTACCAAAATACCCTTAGT
* * *
63930966 TCGTAAAATTACCGAAATACCAC-TGGT
1 TTGTAAAATTACCAAAATACC-CTTAGT
* *
63930993 TTGTGAAATTACCAAAATA-CCTTCAAT
1 TTGTAAAATTACCAAAATACCCTT-AGT
*
63931020 TTGTAAAATTACCCAAATACCC
1 TTGTAAAATTACCAAAATACCC
63931042 CTGATTTACA
Statistics
Matches: 132, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.01
26 5 0.04
27 118 0.89
28 8 0.06
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCTTAGT
Done.