Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 209 of 425
Found at i:63931055 original size:81 final size:80
Alignment explanation
Indices: 63930891--63931070 Score: 204
Period size: 81 Copynumber: 2.2 Consensus size: 80
63930881 TGTAGGATAG
* *
63930891 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACTCCTAGTTTGTAAAATTACCAAAA
1 AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACTCCTAATTTGTAAAATTACCAAAA
*
63930956 TACCCTTAGTTCGTAA
66 TACCCTGAGTTCG-AA
* * * *
63930972 AATTACCGAAATACCAC-TGGTTTGTGAAATTACCAAAATAC-CTTCAATTTGTAAAATTACCCA
1 AATTACCGAAATACC-CTTAGTTTGTAAAATTACCAAAATACTCCT-AATTTGTAAAATTACCAA
*
63931035 AATACCCCTGATTTAC-AA
64 AATA-CCCTGAGTT-CGAA
**
63931053 AATTATAGAAATACCCTT
1 AATTACCGAAATACCCTT
63931071 GACTTTTTAA
Statistics
Matches: 84, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
80 3 0.04
81 72 0.86
82 8 0.10
83 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (80 bp):
AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACTCCTAATTTGTAAAATTACCAAAA
TACCCTGAGTTCGAA
Found at i:63931056 original size:54 final size:54
Alignment explanation
Indices: 63930891--63931070 Score: 213
Period size: 54 Copynumber: 3.3 Consensus size: 54
63930881 TGTAGGATAG
*
63930891 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACTCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGA-TTTGTAA
* * * * *
63930945 AATTACCAAAATACCCTTAGTTCGTAAAATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAA
* * **
63930999 AATTACCAAAATA-CCTTCAATTTGTAAAATTACCCAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTT-AGTTTGTAAAATTACCAAAATACCCCTGATTTGTAA
*
63931053 AATTA-TAGAAATACCCTT
1 AATTACCA-AAATACCCTT
63931071 GACTTTTTAA
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
53 5 0.05
54 98 0.92
55 4 0.04
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAA
Found at i:63931064 original size:27 final size:27
Alignment explanation
Indices: 63931034--63931127 Score: 111
Period size: 27 Copynumber: 3.4 Consensus size: 27
63931024 AAAATTACCC
*
63931034 AAATACCCCTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
63931061 AAATACCCTTGACTTTTTA-AAAATTATAG
1 AAATACCCTTGA---TTTACAAAATTATAG
* *
63931090 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCTTGATTTACAAAATTA-TAG
63931117 AAATACCCTTG
1 AAATACCCTTG
63931128 GTTTGTAGAT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
26 4 0.07
27 29 0.50
28 1 0.02
29 20 0.34
30 4 0.07
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:63931248 original size:27 final size:26
Alignment explanation
Indices: 63931185--63931248 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
63931175 ACCCCTAATA
*
63931185 GGTAAAAAGACCGTAAAGCCCCGTAG
1 GGTAAAATGACCGTAAAGCCCCGTAG
* * *
63931211 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCC-CGTAG
63931238 GGTAAAATGAC
1 GGTAAAATGAC
63931249 GAATATGCCC
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 17 0.55
27 14 0.45
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (26 bp):
GGTAAAATGACCGTAAAGCCCCGTAG
Found at i:63932133 original size:24 final size:25
Alignment explanation
Indices: 63932057--63932118 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
63932047 AGGAAGTGCT
* * *
63932057 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
63932082 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
63932107 AAAAGGGCTTTG
1 AAAAGGGCTTTG
63932119 TCCTAGTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:63932332 original size:42 final size:42
Alignment explanation
Indices: 63932273--63932364 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
63932263 TAGTCTCCCC
* * **
63932273 AAATGGGCTTGCATACATTCATTGGCATTTTATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
63932315 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
63932357 AAATGGGC
1 AAATGGGC
63932365 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:63932423 original size:31 final size:31
Alignment explanation
Indices: 63932388--63932502 Score: 196
Period size: 31 Copynumber: 3.7 Consensus size: 31
63932378 CGTTTACAGT
63932388 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
63932419 AAAGGCTTCGGCCTAGGGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
63932450 AAAGGCTTCGGCCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
63932481 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
63932503 TCAAGACTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.06
31 74 0.94
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:63936830 original size:40 final size:40
Alignment explanation
Indices: 63936749--63936966 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
63936739 CAACCAAGTA
** * *
63936749 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAG-TAACTCGCACAAATG
** *
63936788 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
63936828 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
63936868 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
63936908 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
63936948 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
63936967 TTATCATCCG
Statistics
Matches: 169, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
39 13 0.08
40 156 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:63941808 original size:25 final size:25
Alignment explanation
Indices: 63941779--63941826 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63941769 TTATAACGTG
* * *
63941779 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63941804 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63941827 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63941888 original size:20 final size:20
Alignment explanation
Indices: 63941863--63941951 Score: 146
Period size: 20 Copynumber: 4.5 Consensus size: 20
63941853 ATTTTGATAA
63941863 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63941883 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63941903 ACATGACATG--TGATATGC
1 ACATGATATGTATGATATGC
63941921 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
63941941 ACATGAGATGT
1 ACATGATATGT
63941952 TCATAAATGC
Statistics
Matches: 64, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
18 17 0.27
20 47 0.73
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63941890 original size:11 final size:11
Alignment explanation
Indices: 63941874--63941946 Score: 63
Period size: 11 Copynumber: 7.4 Consensus size: 11
63941864 CATGATATGT
63941874 ATGATATGCAC
1 ATGATATGCAC
*
63941885 ATGATATG--T
1 ATGATATGCAC
63941894 ATGATATGCAC
1 ATGATATGCAC
*
63941905 ATGACATG---
1 ATGATATGCAC
63941913 -TGATATGCAC
1 ATGATATGCAC
*
63941923 ATGATATG--T
1 ATGATATGCAC
63941932 ATGATATGCAC
1 ATGATATGCAC
63941943 ATGA
1 ATGA
63941947 GATGTTCATA
Statistics
Matches: 48, Mismatches: 6, Indels: 16
0.69 0.09 0.23
Matches are distributed among these distances:
7 6 0.12
9 16 0.33
11 26 0.54
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:63941899 original size:38 final size:37
Alignment explanation
Indices: 63941857--63941951 Score: 111
Period size: 38 Copynumber: 2.5 Consensus size: 37
63941847 CATGGGATTT
*
63941857 TGATA-AACATGATATGTATGATATGCACATGATATGTA
1 TGATAGAACATGACATG--TGATATGCACATGATATGTA
*
63941895 TGATATGCACATGACATGTGATATGCACATGATATGTA
1 TGATA-GAACATGACATGTGATATGCACATGATATGTA
* *
63941933 TGATATGCACATGAGATGT
1 TGATA-GAACATGACATGT
63941952 TCATAAATGC
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
38 43 0.83
40 9 0.17
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.33
Consensus pattern (37 bp):
TGATAGAACATGACATGTGATATGCACATGATATGTA
Found at i:63942028 original size:23 final size:23
Alignment explanation
Indices: 63941998--63942097 Score: 182
Period size: 23 Copynumber: 4.3 Consensus size: 23
63941988 AGGAAGTGCA
63941998 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
63942021 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT--T
63942046 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
63942069 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
63942092 AAAGGG
1 AAAGGG
63942098 GGATAGGCCT
Statistics
Matches: 75, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
23 52 0.69
25 23 0.31
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:63942069 original size:48 final size:46
Alignment explanation
Indices: 63941998--63942097 Score: 182
Period size: 48 Copynumber: 2.1 Consensus size: 46
63941988 AGGAAGTGCA
63941998 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT--T
63942046 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
63942092 AAAGGG
1 AAAGGG
63942098 GGATAGGCCT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
46 7 0.13
48 45 0.87
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (46 bp):
AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
Found at i:63942112 original size:48 final size:47
Alignment explanation
Indices: 63941998--63942115 Score: 157
Period size: 48 Copynumber: 2.5 Consensus size: 47
63941988 AGGAAGTGCA
* *
63941998 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCATAGGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-AT
* *
63942046 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCATAGGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAT
*
63942092 AAAGGGGGATAGGCCTCCAGTTAT
1 AAA-GGGCATAGGCC-CCAGTTAT
63942116 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
46 4 0.06
47 8 0.12
48 53 0.82
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (47 bp):
AAAGGGCATAGGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAT
Found at i:63942367 original size:30 final size:31
Alignment explanation
Indices: 63942307--63942369 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
63942297 CGTTTACAGT
63942307 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
63942338 AAAGGCTTCGGCCCAGTGTTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63942368 AA
1 AA
63942370 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63945116 original size:27 final size:28
Alignment explanation
Indices: 63945086--63945186 Score: 102
Period size: 27 Copynumber: 3.7 Consensus size: 28
63945076 TTTAGTTTAC
63945086 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
63945113 TAAACAATACTGAAATACCC-TCGATTTG
1 TAAA-ATTACCGAAATACCCTTAGATTTG
* * *
63945141 TAAAATTACTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
63945168 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
63945187 CGATTTACAG
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
26 5 0.08
27 35 0.56
28 23 0.37
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:63945279 original size:27 final size:26
Alignment explanation
Indices: 63945182--63945389 Score: 251
Period size: 27 Copynumber: 7.8 Consensus size: 26
63945172 ATTACCAAAG
*
63945182 TACCC-CGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTA-CATTT
* * *
63945208 TACCC-CAATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTA-CATTT
*
63945234 TACCC-CGATTTACATAATTATCATTT
1 TACCCTCGATTTACAGAATTA-CATTT
*
63945260 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTA-CATTT
63945287 TACCCTCGATTTACAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACA-TTT
*
63945314 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-ATTT
*
63945341 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-ATTT
*
63945368 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
63945390 TAAAATACCC
Statistics
Matches: 166, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
26 54 0.33
27 111 0.67
28 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (26 bp):
TACCCTCGATTTACAGAATTACATTT
Found at i:63945352 original size:81 final size:79
Alignment explanation
Indices: 63945182--63945389 Score: 278
Period size: 81 Copynumber: 2.6 Consensus size: 79
63945172 ATTACCAAAG
* * *
63945182 TACCC-CGATTTACAGAATTATCGTTTTACCC-CAATTTACATAATTATCGTTTTACCCCGATTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTA-CGTTTTACCCCGATTT
*
63945245 ACATAATTATCATTT
65 ACAGAATTATCATTT
*
63945260 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACAGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTAC-GTTTTACCC-CGATT
*
63945325 TATAGAATTA-CTATTT
64 TACAGAATTATC-ATTT
* **
63945341 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTAC
63945390 TAAAATACCC
Statistics
Matches: 116, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
78 5 0.04
79 26 0.22
80 23 0.20
81 62 0.53
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (79 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACGTTTTACCCCGATTTA
CAGAATTATCATTT
Found at i:63945398 original size:27 final size:27
Alignment explanation
Indices: 63945260--63945589 Score: 131
Period size: 27 Copynumber: 12.2 Consensus size: 27
63945250 ATTATCATTT
* *****
63945260 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
* ***
63945287 TACCCTCGATTTACAGAATTAC-AGTTT
1 TACCCTCGATTTACAAAATTACTA-AAA
* * ***
63945314 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ***
63945341 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
63945368 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
63945395 TACCCT-TAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
* **
63945422 TACCC-CTAGTTTGTAAAATTA-TCAAAA
1 TACCCTCGA-TTTACAAAATTACT-AAAA
* * ** *
63945449 TACCCTTGGTTTGTAAAATTAC-GAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** *
63945475 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
*
63945502 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
63945529 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * *
63945558 TACCATTG-TTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
63945584 TACCCT
1 TACCCT
63945590 TGGTTTGTAG
Statistics
Matches: 255, Mismatches: 31, Indels: 35
0.79 0.10 0.11
Matches are distributed among these distances:
26 40 0.16
27 192 0.75
28 5 0.02
29 18 0.07
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:63945399 original size:81 final size:81
Alignment explanation
Indices: 63945128--63945400 Score: 229
Period size: 81 Copynumber: 3.4 Consensus size: 81
63945118 AATACTGAAA
** * * * ***
63945128 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTA-A-AATTACCAAAGTACCC-CGA
1 TACCCTCGATTTACAAAATTACAGAAATACCCTCGA-TT-TACAGAATTATCATTTTACCCTCGA
* *
63945190 TTTACAGAATTATCGTTT
64 TTTACAGAATTACCATTT
* * *** *
63945208 TACCC-CAATTTACATAATTATC-GTTTTACCC-CGATTTACATAATTATCATTTTACCCTCGAT
1 TACCCTCGATTTACAAAATTA-CAGAAATACCCTCGATTTACAGAATTATCATTTTACCCTCGAT
*
63945270 TTACAGAATTACCGTTT
65 TTACAGAATTACCATTT
* *** * *
63945287 TACCCTCGATTTACAGAATTACAGTTTTACCCTCGATTTATAGAATTA-CTATTTTACCCTTGAT
1 TACCCTCGATTTACAAAATTACAGAAATACCCTCGATTTACAGAATTATC-ATTTTACCCTCGAT
*
63945351 TTACAGAATTACTATTT
65 TTACAGAATTACCATTT
63945368 TACCCTCGATTTACAAAATTACTA-AAATACCCT
1 TACCCTCGATTTACAAAATTAC-AGAAATACCCT
63945401 TAGTTTGTAA
Statistics
Matches: 160, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
76 2 0.01
77 3 0.02
78 15 0.09
79 42 0.26
80 29 0.18
81 68 0.43
82 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACAGAAATACCCTCGATTTACAGAATTATCATTTTACCCTCGATT
TACAGAATTACCATTT
Found at i:63945415 original size:54 final size:52
Alignment explanation
Indices: 63945314--63945578 Score: 155
Period size: 54 Copynumber: 4.9 Consensus size: 52
63945304 ATTACAGTTT
* *** * **
63945314 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATT-TACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGTTTGTA-A-AATTAC-ATAA
* *
63945368 TACCCTCGATTTACAAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTT-GTTTGTAAAATTA-CATAA
* *
63945422 TACCC-CTAGTTTGTAAAATTA-TCAAAATACCCTTGGTTTGTAAAATTACGA-AA
1 TACCCTCGA-TTTATAAAATTACT-AAAATACCCTT-GTTTGTAAAATTAC-ATAA
* * * * * *
63945475 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATT-TACAAAGTTACAGAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGTTTGTA-AAA-TTACA-TAA
* * * **
63945529 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGTTTACAAAATTAC
1 TACCCTCGA-TTTAT-AAAATTACTA-AAATACCCTTGTTTGTAAAATTAC
63945579 TGAAATACCC
Statistics
Matches: 170, Mismatches: 25, Indels: 31
0.75 0.11 0.14
Matches are distributed among these distances:
51 2 0.01
52 7 0.04
53 37 0.22
54 86 0.51
55 14 0.08
56 23 0.14
57 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (52 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTTGTTTGTAAAATTACATAA
Found at i:63945426 original size:81 final size:80
Alignment explanation
Indices: 63945260--63945516 Score: 189
Period size: 81 Copynumber: 3.2 Consensus size: 80
63945250 ATTATCATTT
* ** * *** *
63945260 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACAGTTTTACCC-TCGAT
1 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACA-AAATACCCTTAG-T
* * * ***
63945324 TTATAGAATTACTATTT
64 TTGTAAAATTACCAAAA
63945341 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTAGTT
1 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC-AAAATACCCTTAGTT
63945406 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * *** * * ** * * *
63945422 TACCCCTAGTTTGTA-A-AATTA-TCAAAATACCCTTGGTTTGTAAAATTACGAAATACCCTCAA
1 TA-CCCTTGATT-TACAGAATTACT-ATTTTACCCTCGATTTACAAAATTACAAAATACCCTTAG
63945484 TTTGTAAAATTACCAAAA
63 TTTGTAAAATTACCAAAA
*
63945502 TACCCCTGATTTACA
1 TACCCTTGATTTACA
63945517 AAGTTACAGA
Statistics
Matches: 141, Mismatches: 29, Indels: 14
0.77 0.16 0.08
Matches are distributed among these distances:
78 2 0.01
79 7 0.05
80 31 0.22
81 88 0.62
82 11 0.08
83 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (80 bp):
TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACAAAATACCCTTAGTTT
GTAAAATTACCAAAA
Found at i:63945475 original size:26 final size:26
Alignment explanation
Indices: 63945382--63945617 Score: 177
Period size: 27 Copynumber: 8.8 Consensus size: 26
63945372 CTCGATTTAC
*
63945382 AAAATTACTAAAATACCCTTAGTTTGT
1 AAAATTAC-AAAATACCCTTGGTTTGT
* *
63945409 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTA-CAAAATACCCTTGGTTTGT
63945436 AAAATTATCAAAATACCCTTGGTTTGT
1 AAAATTA-CAAAATACCCTTGGTTTGT
* ***
63945463 AAAATTACGAAATACCCTCAATTTGT
1 AAAATTACAAAATACCCTTGGTTTGT
* * **
63945489 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTA-CAAAATACCCTTGGTTTGT
* * *
63945516 AAAGTTACAGAAATACCCTTGACTTTCT
1 AAAATTACA-AAATACCCTTG-GTTTGT
* * **
63945544 AAAAATTATAGAAATACCATT-GTTTAC
1 -AAAATTACA-AAATACCCTTGGTTTGT
*
63945571 AAAATTACTGAAATACCCTTGGTTTGT
1 AAAATTAC-AAAATACCCTTGGTTTGT
* * * *
63945598 AGATTTACCAAACACCCTTG
1 AAAATTACAAAATACCCTTG
63945618 TAGGATGAAA
Statistics
Matches: 168, Mismatches: 34, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
26 50 0.30
27 97 0.58
28 4 0.02
29 17 0.10
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (26 bp):
AAAATTACAAAATACCCTTGGTTTGT
Found at i:63945530 original size:80 final size:81
Alignment explanation
Indices: 63945382--63945536 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 81
63945372 CTCGATTTAC
* * *
63945382 AAAATTACTAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATCAA
1 AAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTATCAA
63945447 AATACCCTTGGTTTGT
66 AATACCCTTGGTTTGT
*
63945463 AAAATTAC-GAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTA-C
1 AAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTATC
63945524 AGAAATACCCTTG
64 A-AAATACCCTTG
63945537 ACTTTCTAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
78 2 0.03
79 8 0.12
80 49 0.73
81 8 0.12
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACTAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTATCAA
AATACCCTTGGTTTGT
Found at i:63945595 original size:27 final size:27
Alignment explanation
Indices: 63945341--63945595 Score: 144
Period size: 27 Copynumber: 9.4 Consensus size: 27
63945331 ATTACTATTT
* * ***
63945341 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTTGGTTTACAAAATTACTAAAA
* *
63945368 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* ** *
63945395 TACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * **
63945422 TACCCCTAGTTTGTAAAATTA-TCAAAA
1 TACCCTTGGTTTACAAAATTACT-AAAA
** *
63945449 TACCCTTGGTTTGTAAAATTAC-GAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
*** ** *
63945475 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
* * *
63945502 TACCCCTGATTTACAAAGTTAC-AGAAA
1 TACCCTTGGTTTACAAAATTACTA-AAA
*
63945529 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAC--AAAATTACTA-AAA
* *
63945558 TACCATT-GTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACTAAAA
63945584 TACCCTTGGTTT
1 TACCCTTGGTTT
63945596 GTAGATTTAC
Statistics
Matches: 184, Mismatches: 33, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
26 39 0.21
27 124 0.67
28 4 0.02
29 17 0.09
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.34
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACTAAAA
Found at i:63945712 original size:27 final size:27
Alignment explanation
Indices: 63945635--63945712 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
63945625 AAATGACTAA
*
63945635 AATACCCCTAT-TAGGTAAAAAGACCGT
1 AATACCCCTATAT-GGTAAAATGACCGT
* *
63945662 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATATGGTAAAATGACCGT
*
63945689 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTATATGGTAAAATGAC
63945713 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (27 bp):
AATACCCCTATATGGTAAAATGACCGT
Found at i:63946893 original size:25 final size:25
Alignment explanation
Indices: 63946864--63946911 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63946854 TTATAATATG
* * *
63946864 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63946889 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63946912 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:63946980 original size:20 final size:20
Alignment explanation
Indices: 63946955--63947013 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
63946945 TAAATATGGT
63946955 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
63946975 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
63946995 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
63947014 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:63946995 original size:11 final size:11
Alignment explanation
Indices: 63946959--63947013 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
63946949 TATGGTATGT
63946959 ATGATATGCAC
1 ATGATATGCAC
* *
63946970 ATGAAATG--T
1 ATGATATGCAC
63946979 ATGATATGCAC
1 ATGATATGCAC
*
63946990 ATGATATG--T
1 ATGATATGCAC
63946999 ATGATATGCAC
1 ATGATATGCAC
63947010 ATGA
1 ATGA
63947014 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:63947091 original size:24 final size:24
Alignment explanation
Indices: 63947064--63947182 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
63947054 GAGGAAGTGA
*
63947064 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
63947088 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
63947111 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
63947135 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63947159 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63947183 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:63947133 original size:47 final size:48
Alignment explanation
Indices: 63947064--63947182 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
63947054 GAGGAAGTGA
63947064 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
63947111 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
63947159 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63947183 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:63947408 original size:31 final size:31
Alignment explanation
Indices: 63947373--63947467 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
63947363 CGTTTACAGT
63947373 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63947404 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
63947435 AAAGGCTTCAGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
63947466 AA
1 AA
63947468 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:63960299 original size:24 final size:24
Alignment explanation
Indices: 63960270--63960317 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
63960260 AATATGAAAA
63960270 TGAAAGTAAATGGACTTAAAGGGT
1 TGAAAGTAAATGGACTTAAAGGGT
63960294 TGAAAGTAAATGGACTTAAAGGGT
1 TGAAAGTAAATGGACTTAAAGGGT
63960318 AATTATTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.29, T:0.25
Consensus pattern (24 bp):
TGAAAGTAAATGGACTTAAAGGGT
Found at i:63962958 original size:21 final size:21
Alignment explanation
Indices: 63962932--63962971 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
63962922 AAATCTTTAG
63962932 TTCTATGAGTAGGATGCTTAA
1 TTCTATGAGTAGGATGCTTAA
63962953 TTCTATGAGTAGGATGCTT
1 TTCTATGAGTAGGATGCTT
63962972 GCCTAAGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40
Consensus pattern (21 bp):
TTCTATGAGTAGGATGCTTAA
Found at i:63966043 original size:66 final size:68
Alignment explanation
Indices: 63965967--63966153 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
63965957 TAGTACCACT
*
63965967 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
63966029 CACG
65 CACG
63966033 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
63966098 ATCACG
63 ATCACG
63966104 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
63966154 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:63966078 original size:71 final size:71
Alignment explanation
Indices: 63965990--63966153 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63965980 CGATTTGTCT
63965990 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63966055 CTTTCA
66 CTTTCA
63966061 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63966126 CTTTCA
66 CTTTCA
63966132 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
63966154 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:63966191 original size:71 final size:70
Alignment explanation
Indices: 63965990--63966187 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
63965980 CGATTTGTCT
* * *
63965990 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
63966055 CTTTCA
65 CTTTCA
* * *
63966061 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
63966126 CTTTCA
65 CTTTCA
* *
63966132 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
63966188 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:63973612 original size:66 final size:68
Alignment explanation
Indices: 63973536--63973722 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
63973526 TAGTACCACT
*
63973536 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
63973598 CACG
65 CACG
63973602 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
63973667 ATCACG
63 ATCACG
63973673 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
63973723 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:63973647 original size:71 final size:71
Alignment explanation
Indices: 63973559--63973722 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63973549 CGATTTGTCT
63973559 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63973624 CTTTCA
66 CTTTCA
63973630 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63973695 CTTTCA
66 CTTTCA
63973701 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
63973723 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:63973760 original size:71 final size:70
Alignment explanation
Indices: 63973559--63973756 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
63973549 CGATTTGTCT
* * *
63973559 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
63973624 CTTTCA
65 CTTTCA
* * *
63973630 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
63973695 CTTTCA
65 CTTTCA
* *
63973701 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
63973757 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:63976392 original size:17 final size:19
Alignment explanation
Indices: 63976350--63976393 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
63976340 ATGAAATTTT
*
63976350 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
63976369 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
63976387 AA-TATTA
1 AATTATTA
63976394 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:63980615 original size:38 final size:40
Alignment explanation
Indices: 63980517--63980621 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
63980507 ATCACGATTT
* *
63980517 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
63980557 GCACGAATGCCTTCGGGTCTTAG-CCGGAT-GTA-GCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* *
63980596 GCAC-ATTGCCTTCGGGTCTTAACCCG
1 GCACGAATGCCTTCGGGTCTTAGCCCG
63980622 TTATAATTTC
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
37 1 0.02
38 18 0.32
39 16 0.28
40 22 0.39
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.24
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:63982851 original size:30 final size:30
Alignment explanation
Indices: 63982815--63982945 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
63982805 GACAAGATTG
* * * * *
63982815 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
63982845 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
63982873 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
63982903 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
63982932 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63982946 GATTCACTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 20 0.22
30 46 0.50
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:63982906 original size:58 final size:58
Alignment explanation
Indices: 63982815--63982945 Score: 174
Period size: 58 Copynumber: 2.2 Consensus size: 58
63982805 GACAAGATTG
* * * * * *
63982815 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG-ATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAG-CTGAAATATATA
*
63982873 GCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTG-AAATATATA
63982932 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
63982946 GATTCACTAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
57 2 0.03
58 41 0.64
59 21 0.33
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGCTGAAATATATA
Found at i:63989239 original size:66 final size:68
Alignment explanation
Indices: 63989163--63989349 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
63989153 TAGTACCACT
*
63989163 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
63989225 CACG
65 CACG
63989229 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
63989294 ATCACG
63 ATCACG
63989300 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
63989350 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:63989274 original size:71 final size:71
Alignment explanation
Indices: 63989186--63989349 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
63989176 CGATTTGTCT
63989186 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63989251 CTTTCA
66 CTTTCA
63989257 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
63989322 CTTTCA
66 CTTTCA
63989328 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
63989350 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:63989387 original size:71 final size:70
Alignment explanation
Indices: 63989186--63989383 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
63989176 CGATTTGTCT
* * *
63989186 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
63989251 CTTTCA
65 CTTTCA
* * *
63989257 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
63989322 CTTTCA
65 CTTTCA
* *
63989328 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
63989384 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:63990700 original size:21 final size:22
Alignment explanation
Indices: 63990665--63990774 Score: 93
Period size: 21 Copynumber: 5.2 Consensus size: 22
63990655 TCATAAAACA
*
63990665 TAAACCCTAAACCCCTAACCCT
1 TAAACCCTAAACCCCTAAACCT
63990687 TAAACCCT-AACCCCTAAACCT
1 TAAACCCTAAACCCCTAAACCT
* * * *
63990708 TAAACCC-CAACACTTAAACCA
1 TAAACCCTAAACCCCTAAACCT
* ** * *
63990729 TAAACCAT-AAGTCATAAACCA
1 TAAACCCTAAACCCCTAAACCT
*
63990750 TAAACCATAAA-CCCTAAACCT
1 TAAACCCTAAACCCCTAAACCT
63990771 TAAA
1 TAAA
63990775 ATAGTAACTC
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
21 64 0.86
22 10 0.14
ACGTcount: A:0.45, C:0.35, G:0.01, T:0.18
Consensus pattern (22 bp):
TAAACCCTAAACCCCTAAACCT
Found at i:63990817 original size:7 final size:7
Alignment explanation
Indices: 63990643--63990823 Score: 82
Period size: 7 Copynumber: 25.6 Consensus size: 7
63990633 TGTCACACCT
63990643 ATAAACC
1 ATAAACC
* *
63990650 TTAAATC
1 ATAAACC
*
63990657 ATAAAAC
1 ATAAACC
63990664 ATAAACC
1 ATAAACC
*
63990671 CTAAACCC
1 ATAAA-CC
* *
63990679 CTAACCC
1 ATAAACC
*
63990686 TTAAACC
1 ATAAACC
* *
63990693 CTAACCC
1 ATAAACC
*
63990700 CTAAACC
1 ATAAACC
*
63990707 TTAAACC
1 ATAAACC
**
63990714 -CCAACAC
1 ATAAAC-C
*
63990721 TTAAACC
1 ATAAACC
63990728 ATAAACC
1 ATAAACC
**
63990735 ATAAGTC
1 ATAAACC
63990742 ATAAACC
1 ATAAACC
63990749 ATAAACC
1 ATAAACC
63990756 ATAAACC
1 ATAAACC
*
63990763 CTAAACC
1 ATAAACC
*
63990770 TTAAA--
1 ATAAACC
63990775 ATAGTAACTC
1 ATA--AAC-C
*
63990785 TTAAACC
1 ATAAACC
*
63990792 ATATACC
1 ATAAACC
*
63990799 CTAAATCC
1 ATAAA-CC
63990807 -TAAACC
1 ATAAACC
*
63990813 ATAAACT
1 ATAAACC
63990820 ATAA
1 ATAA
63990824 TGATAATTAA
Statistics
Matches: 133, Mismatches: 31, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
5 2 0.02
6 5 0.04
7 110 0.83
8 14 0.11
10 2 0.02
ACGTcount: A:0.48, C:0.30, G:0.01, T:0.21
Consensus pattern (7 bp):
ATAAACC
Found at i:63991229 original size:41 final size:41
Alignment explanation
Indices: 63991171--63991267 Score: 122
Period size: 41 Copynumber: 2.3 Consensus size: 41
63991161 TATAGTGACG
* * * *
63991171 TTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGGTGT
1 TTTTTTAAAAAGCGCTGCTAATGCTCAACCTATAGCGGCGT
* *
63991212 TTTTTTAAAAAGTGCTGCTAATGCTCAATCTATAGCGGCGTTT
1 TTTTTTAAAAAGCGCTGCTAATGCTCAACCTATAGCGGCG--T
63991255 TTTTTTAAAAAGC
1 TTTTTTAAAAAGC
63991268 ACAAATAATG
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
41 34 0.72
43 13 0.28
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (41 bp):
TTTTTTAAAAAGCGCTGCTAATGCTCAACCTATAGCGGCGT
Found at i:63991383 original size:40 final size:40
Alignment explanation
Indices: 63991328--63991451 Score: 194
Period size: 40 Copynumber: 3.1 Consensus size: 40
63991318 TTTTTGCGTC
* * * *
63991328 GTTTTTCAAAAAGCGCCTCTAATGGTCAACCTATAGCGGT
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGT
* *
63991368 GTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGT
63991408 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGT
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGT
63991448 GTTT
1 GTTT
63991452 ATTATCCAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 76 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (40 bp):
GTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGCGGT
Found at i:63994434 original size:29 final size:29
Alignment explanation
Indices: 63994400--63994472 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
63994390 CTATTTGTGT
*
63994400 CATGTGGGCTACACAG-GCATGTGTGAGGC
1 CATGTGGGCTACAC-GTACATGTGTGAGGC
*
63994429 CATGTGGGCTACACGTACGTGTGTGAGGC
1 CATGTGGGCTACACGTACATGTGTGAGGC
*
63994458 CATGTGGGCCACACG
1 CATGTGGGCTACACG
63994473 GGTTGGCCAG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 1 0.03
29 39 0.98
ACGTcount: A:0.19, C:0.23, G:0.37, T:0.21
Consensus pattern (29 bp):
CATGTGGGCTACACGTACATGTGTGAGGC
Found at i:63998218 original size:20 final size:20
Alignment explanation
Indices: 63998191--63998237 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
63998181 CCAAATGCCT
*
63998191 AAAACCCAGCTAAATTACCC
1 AAAACCCAGCTAAACTACCC
*
63998211 ATAACCCAGCTAAACTACCC
1 AAAACCCAGCTAAACTACCC
63998231 AAAACCC
1 AAAACCC
63998238 GGTACCCATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.45, C:0.38, G:0.04, T:0.13
Consensus pattern (20 bp):
AAAACCCAGCTAAACTACCC
Found at i:63999392 original size:35 final size:34
Alignment explanation
Indices: 63999310--63999392 Score: 80
Period size: 35 Copynumber: 2.4 Consensus size: 34
63999300 TCATCTGTAT
*
63999310 TTTTATT-TCTATTTTAATTTAATCCTTTCTAAA
1 TTTTATTATATATTTTAATTTAATCCTTTCTAAA
* * * * *
63999343 TTTTATTTTTTATTTTAACTTTATTTCTTT-TAGA
1 TTTTATTATATATTTTAA-TTTAATCCTTTCTAAA
63999377 TTATTATTATATATTT
1 TT-TTATTATATATTT
63999393 CAATATTTTG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
33 7 0.17
34 14 0.34
35 20 0.49
ACGTcount: A:0.25, C:0.07, G:0.01, T:0.66
Consensus pattern (34 bp):
TTTTATTATATATTTTAATTTAATCCTTTCTAAA
Found at i:64002536 original size:16 final size:14
Alignment explanation
Indices: 64002504--64002556 Score: 65
Period size: 14 Copynumber: 3.7 Consensus size: 14
64002494 ATCGATACCT
64002504 TTTGCATTCATGCA
1 TTTGCATTCATGCA
64002518 TTTGCATCTCATAGCA
1 TTTGCAT-TCAT-GCA
64002534 TTT-CATTGCAT-CA
1 TTTGCATT-CATGCA
64002547 TTTGCATTCA
1 TTTGCATTCA
64002557 AAATTATAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 7 0.20
14 12 0.34
15 10 0.29
16 6 0.17
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (14 bp):
TTTGCATTCATGCA
Found at i:64003800 original size:38 final size:35
Alignment explanation
Indices: 64003741--64003858 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
64003731 TCAATCATGC
*
64003741 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
64003780 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
64003811 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
64003842 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
64003859 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:64003802 original size:31 final size:31
Alignment explanation
Indices: 64003764--64003858 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
64003754 CCTTTTCATA
*
64003764 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64003795 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64003826 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64003857 TT
1 TT
64003859 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:64004100 original size:24 final size:24
Alignment explanation
Indices: 64004049--64004215 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
64004039 GCTTTATCAT
* *
64004049 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* **
64004074 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
64004098 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTG
64004121 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
64004145 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
64004169 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
64004193 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64004216 TCACTTCCTC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 100 0.74
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:64004149 original size:71 final size:71
Alignment explanation
Indices: 64004048--64004215 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
64004038 TGCTTTATCA
*
64004048 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
64004112 AGCCCTTT
64 AGCCCTTT
* * **
64004120 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
64004185 CCCTTT
66 CCCTTT
64004191 TGATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
64004216 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:64004291 original size:20 final size:20
Alignment explanation
Indices: 64004266--64004325 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
64004256 TATGATTACC
64004266 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
64004286 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
64004306 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
64004326 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:64004296 original size:11 final size:11
Alignment explanation
Indices: 64004266--64004320 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
64004256 TATGATTACC
64004266 TCATGTGCATA
1 TCATGTGCATA
*
64004277 TCA--TACATA
1 TCATGTGCATA
64004286 TCATGTGCATA
1 TCATGTGCATA
* *
64004297 TCA--TACATT
1 TCATGTGCATA
64004306 TCATGTGCATA
1 TCATGTGCATA
64004317 TCAT
1 TCAT
64004321 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:64004400 original size:25 final size:25
Alignment explanation
Indices: 64004368--64004415 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64004358 ATACATAAAC
* * *
64004368 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
64004393 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
64004416 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:64010814 original size:31 final size:31
Alignment explanation
Indices: 64010772--64010865 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
64010762 CCCTTTCATA
*
64010772 TTTCAT-TTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64010802 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64010833 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64010864 TT
1 TT
64010866 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
30 6 0.10
31 56 0.90
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:64011108 original size:24 final size:24
Alignment explanation
Indices: 64011057--64011199 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
64011047 GCTTTATCAT
*
64011057 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
64011082 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
64011106 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
64011129 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
64011153 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
64011177 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64011200 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64011136 original size:47 final size:48
Alignment explanation
Indices: 64011057--64011198 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
64011047 GCTTTATCAT
* *
64011057 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
64011106 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
64011153 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
64011199 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:64011157 original size:71 final size:72
Alignment explanation
Indices: 64011056--64011199 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
64011046 TGCTTTATCA
*
64011056 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
64011121 GCCCTTT
66 GCCCTTT
* * **
64011128 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
64011191 AGCCCTTT
65 AGCCCTTT
64011199 T
1 T
64011200 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:64011275 original size:20 final size:20
Alignment explanation
Indices: 64011250--64011309 Score: 111
Period size: 20 Copynumber: 3.0 Consensus size: 20
64011240 TATGATTACC
64011250 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
64011270 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATA
64011290 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
64011310 CCATATTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:64011280 original size:11 final size:11
Alignment explanation
Indices: 64011250--64011304 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
64011240 TATGATTACC
64011250 TCATGTGCATA
1 TCATGTGCATA
*
64011261 TCA--TACATA
1 TCATGTGCATA
64011270 TCATGTGCATA
1 TCATGTGCATA
* *
64011281 TCA--TACATT
1 TCATGTGCATA
64011290 TCATGTGCATA
1 TCATGTGCATA
64011301 TCAT
1 TCAT
64011305 ACATACCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:64011384 original size:25 final size:25
Alignment explanation
Indices: 64011352--64011399 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64011342 ATACATAAAC
* * *
64011352 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
64011377 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
64011400 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:64015541 original size:42 final size:42
Alignment explanation
Indices: 64015482--64015565 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
64015472 AAGCTTAAAA
64015482 TGATAGATTCTTTCTTCAAAACCAGTTTCTGACAAAGTGGAT
1 TGATAGATTCTTTCTTCAAAACCAGTTTCTGACAAAGTGGAT
64015524 TGATAGATTCTTTCTTCAAAACCAGTTTCTGACAAAGTGGAT
1 TGATAGATTCTTTCTTCAAAACCAGTTTCTGACAAAGTGGAT
64015566 GACGGTATCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (42 bp):
TGATAGATTCTTTCTTCAAAACCAGTTTCTGACAAAGTGGAT
Found at i:64017855 original size:132 final size:131
Alignment explanation
Indices: 64017698--64018217 Score: 380
Period size: 132 Copynumber: 3.9 Consensus size: 131
64017688 ATAGCAGATT
* * *
64017698 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCGGATTTGGCATCCTTGTGTTTATAGG
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATTTGACATCCCTGTGTTTATAGG
* *
64017763 GAACAGATCGAAGATAGCAGATCTGGCACTCC-TGTGCTTACAACGAAGCAGATCGAAGATTTCA
66 GAACAAATCAAAGATAGCAGATCTGGCA-TCCTTGTGCTTACAACGAA-CAGATCGAAGATTTCA
64017827 GCA
129 GCA
* *
64017830 TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGACATCCCTGTGTTTATAGG
1 TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATTTGACATCCCTGTGTTTATAGG
* * * ** **
64017895 GAACAAATCAAAGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAG-
66 GAACAAATCAAAGATAGCAGATCTGGCATCCTTGTGCTTACAACGAACAGATCGAAGATTTCAGC
64017959 A
131 A
* * * * * * ** *
64017960 TTTGACA-CTCCTATGCTTACAGCGAAGCAGATCGAAGATTTCAGCA--TGGCATCCCTGTGTTT
1 --TGGCATC-CCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTGACATCCCTGTGTTT
* ** * * * * **
64018022 ATAGGGAACAAGT-TGAGAATAGCAGATTTGGCATCCCTGTGATTATAGGGAACAGATCGAAGAT
61 ATAGGGAACAAATCAAAG-ATAGCAGATCTGGCATCCTTGTGCTTACAACGAACAGATCGAAGAT
*
64018086 AGT-AG-A
125 -TTCAGCA
* * * * ** *
64018092 TCTGACA-CTCCTGTGCTTACAGCGAAGCAAATCGAAGATTTCAGCA--TGGCATCCCTGTGTTT
1 --TGGCATC-CCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTGACATCCCTGTGTTT
* ** * * * * **
64018154 ATAGGGAACAAGT-TGAGAATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGAT
61 ATAGGGAACAAATCAAAG-ATAGCAGATCTGGCATCCTTGTGCTTACAACGAACAGATCGAAGAT
64018218 AGCAGATCTG
Statistics
Matches: 344, Mismatches: 36, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
130 1 0.00
131 21 0.06
132 309 0.90
133 12 0.03
134 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (131 bp):
TGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATTTGACATCCCTGTGTTTATAGG
GAACAAATCAAAGATAGCAGATCTGGCATCCTTGTGCTTACAACGAACAGATCGAAGATTTCAGC
A
Found at i:64017894 original size:176 final size:175
Alignment explanation
Indices: 64017600--64018658 Score: 1042
Period size: 176 Copynumber: 6.0 Consensus size: 175
64017590 AGGTTAAAGT
* * * *
64017600 ATAGCAGATCTGATACTCCTATGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGACATCCCTG
1 ATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
*
64017665 TGTTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
66 TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
*
64017730 AGATAGCGGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAG
131 AGATAGCAGATTTGGCATCC-TGTGTTTATAGGGAACAGATCGAAG
* *
64017776 ATAGCAGATCTGGCACTCCTGTGCTTACAACGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
1 ATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
* *
64017841 TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGACATCCCTGTGTTTATAGGGAACAAATCAA
66 TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
64017906 AGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAG
131 AGATAGCAGATTTGGCATCC-TGTGTTTATAGGGAACAGATCGAAG
* *
64017952 ATAGCAGATTTGACACTCCTATGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
1 ATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
* *
64018017 TGTTTATAGGGAACAAGTTG-AGAATAGCAGATTTGGCATCCCTGTGATTATAGGGAACAGATCG
66 TGTTTATAGGGAACAAGTTGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCG
* * * * * * *
64018081 AAGATAGTAGATCTGACACTCCTGTGCTTACAGCGAAGCAAATCGAAG
130 AAGATAGCAGATTTGGCA-TCCTGTGTTTATAGGGAA-CAGATCGAAG
** * * * * * **
64018129 ATTTCAG--CATGGCA-TCCCTGTGTTTATAGGGAA-CA-AGTTG-AGAATAGCAG-ATTTGGCA
1 ATAGCAGATC-TGACACT-CCTGTGCTTACAGCGAAGCAGA-TCGAAG-ATTTCAGCA--TGGCA
* * * * * * *
64018187 TCCCTGTGTTTATAGGGAAC-AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAG
60 TCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA-
* *** * * *
64018251 CAGATCGAAGATTTTAGCA--TGGTATCCCTATGTTTATAGGGAACA-AGTTGAAG
123 CAAATCGAAGATAGCAG-ATTTGGCAT-CCTGTGTTTATAGGGAACAGA-TCGAAG
* * * * * * ** *
64018304 ATAGCAGATTTGGCA-TCCCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATCTGACA-CT
1 ATAGCAGATCTGACACT-CCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA--TGGCATC-
* * ** ***
64018365 CCTGTGCTTACAACGAAGC-AGATTGAAGATTTTAGCA--TGGCATCCCTGTGTTTATAGGGAAC
62 CCTGTGTTTATAGGGAA-CAAG-TTGAAGATAGCAG-ATTTGGCATCCCTGTGTTTATAGGGAAC
* * * *
64018427 AAGTTG-AGAATAGCAGATTTGGTATCCCTGTGTTTATAGGGAACAAATCGAAG
124 AAATCGAAG-ATAGCAGATTTGGCAT-CCTGTGTTTATAGGGAACAGATCGAAG
* * * *
64018480 ATAGCAGATCTGACATTCATGTGCTTACAGCGAAGCATATCGAAGATTTTAGCATGGCATCCCTG
1 ATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
* * * *
64018545 TGTTTATAGGGAATAAGTTGAAGATAGCAGATTTGGCATCCTTGTTTTTATAGGGAACAGATCGA
66 TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
* * * * *
64018610 AGATAGTAGATTTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAG
131 AGATAGCAGATTTGGCA-TCCTGTGTTTATAGGGAA-CAGATCGAAG
64018657 AT
1 AT
64018659 TTTAGCATGG
Statistics
Matches: 737, Mismatches: 110, Indels: 71
0.80 0.12 0.08
Matches are distributed among these distances:
174 9 0.01
175 46 0.06
176 599 0.81
177 80 0.11
178 3 0.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (175 bp):
ATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTG
TGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGA
AGATAGCAGATTTGGCATCCTGTGTTTATAGGGAACAGATCGAAG
Found at i:64018218 original size:132 final size:132
Alignment explanation
Indices: 64017877--64018975 Score: 1756
Period size: 132 Copynumber: 8.3 Consensus size: 132
64017867 GCAGATTTGA
* ** *
64017877 CATCCCTGTGTTTATAGGGAACAAATCAAAGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* *
64017942 CAGATCGAAGATAGCAGATTTGACACTCCTATGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
64018007 GG
131 GG
*
64018009 CATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAGATTTGGCATCCCTGTGATTATAGGGA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
* *
64018073 ACAGATCGAAGATAGTAGATCTGACACTCCTGTGCTTACAGCGAAGCAAATCGAAGATTTCAGCA
65 ACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA
64018138 TGG
130 TGG
64018141 CATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
* * *
64018205 ACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTTAGCA
65 ACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA
64018270 TGG
130 TGG
* *
64018273 TATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * * *
64018338 CAAATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAACGAAGCAGATTGAAGATTTTAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
64018403 GG
131 GG
*
64018405 CATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAGATTTGGTATCCCTGTGTTTATAGGGA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAGATTTGGCATCCCTGTGTTTATAGGGA
* * * * *
64018469 ACAAATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGCGAAGCATATCGAAGATTTTAGCA
65 ACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCA
64018534 TGG
130 TGG
* * *
64018537 CATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGCAGATTTGGCATCCTTGTTTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * *
64018602 CAGATCGAAGATAGTAGATTTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
64018667 GG
131 GG
*
64018669 CATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * *
64018734 CAGATCGAAGATAGCAGATCAGACATTCCTGTGCTTACAGCGAAGTAGATCGAAGATTTCAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
64018799 GG
131 GG
* * *
64018801 CATCCCTGTGTTTATAGGGAACAAGTTGAAAATAGAAGATTTGGCATCCCTGTGTTTACAGGGAA
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
* * * * *
64018866 CAAATCGAAGATAGCAGATCTAACACTCCTGTGATTATAGCAAAGCAGATCGAAGATTTCAGCAT
66 CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
64018931 GG
131 GG
64018933 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGACA-ATTTG
1 CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAG-CAGATTTG
64018976 ACACTCCTGA
Statistics
Matches: 898, Mismatches: 64, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
131 4 0.00
132 889 0.99
133 5 0.01
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (132 bp):
CATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAA
CAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCAT
GG
Found at i:64018313 original size:50 final size:45
Alignment explanation
Indices: 64018274--64018884 Score: 298
Period size: 44 Copynumber: 13.9 Consensus size: 45
64018264 TTAGCATGGT
* *
64018274 ATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA-TTTGGC
1 ATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTTGGC
* * *
64018318 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGA-TCTGAC
1 ATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTTGGC
* * * ** * * ***
64018362 A-CTCCTGTGCTTACAACGAAGCAGATTGAAGATTTTAGCA---TGGC
1 ATC-CCTATGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTTGGC
* * * *
64018406 ATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAGA-TTTGGT
1 ATCCCTATGTTTATAGGGAACAAATCGAAG-ATAGCAGATTTTGGC
* * *
64018450 ATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGA-TCTGAC
1 ATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTTGGC
* * * * * * * ***
64018494 ATTCATGTGCTTACAGCGAAGCATATCGAAGATTTTAGCA---TGGC
1 ATCCCTATGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTTGGC
* * * *
64018538 ATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGCAGA-TTTGGC
1 ATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTTGGC
* * * * * *
64018582 ATCCTTGTTTTTATAGGGAACAGATCGAAGATAGTAGA-TTTGAC
1 ATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTTGGC
* * * * * ***
64018626 A-CTCCTGTGCTTACAGCGAAGCAGATCGAAGATTTTAGCA---TGGC
1 ATC-CCTATGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTTGGC
* *
64018670 ATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA-TTTGGC
1 ATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTTGGC
* * ** *
64018714 ATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGA-TCAGAC
1 ATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTTGGC
* * * * * * * **
64018758 ATTCCTGTGCTTACAGCGAAGTAGATCGAAGATTTCAGCA---TGGC
1 ATCCCTATGTTTATAGGGAA-CAAATCGAAGATAGCAG-ATTTTGGC
* * * * *
64018802 ATCCCTGTGTTTATAGGGAACAAGTTGAAAATAGAAGA-TTTGGC
1 ATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTTGGC
* *
64018846 ATCCCTGTGTTTACAGGGAACAAATCGAAGATAGCAGAT
1 ATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGAT
64018885 CTAACACTCC
Statistics
Matches: 433, Mismatches: 111, Indels: 45
0.74 0.19 0.08
Matches are distributed among these distances:
42 6 0.01
43 41 0.09
44 324 0.75
45 58 0.13
46 4 0.01
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (45 bp):
ATCCCTATGTTTATAGGGAACAAATCGAAGATAGCAGATTTTGGC
Found at i:64018395 original size:396 final size:396
Alignment explanation
Indices: 64017657--64018975 Score: 1827
Period size: 396 Copynumber: 3.3 Consensus size: 396
64017647 TTCAGCATGA
* * * * * * * *
64017657 CATCCCTGTGTTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCA-TCCCTGTGTTTATAGGGA
1 CATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACT-CCTGTGCTTACAGCGA
** * * *
64017721 A-CAAATCGAAGATAGC-GGATTTGGCATCCTTGTGTTTATAGGGAAC-AGATCGAAGATAGCAG
65 AGCAAATCGAAGATTTCAGCA--TGGCATCCCTGTGTTTATAGGGAACAAG-TTGAAGATAGCAG
* * * ** ** * *
64017783 ATCTGGCA-CTCCTGTGCTTACAACGAAGCAGATCGAAGATTTCAG--CATGGCA-TCCCTGTGT
127 ATTTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAGCAGATC-TGACACT-CCTGTGC
* * * *** * * * **
64017844 TTATAGGGAA-CA-AGTTGAAGATAGCAG-ATTTGACATCCCTGTGTTTATAGGGAACAAATCAA
188 TTACAGCGAAGCAGA-TCGAAGATTTTAGCA--TGGCATCCCTATGTTTATAGGGAACAAGTTGA
* *
64017906 AGATAGCAGATTTGGCATCCTTGTGTTTATAGGGAACAGATCGAAGATAGCAGATTTGACACTCC
250 AGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCC
*
64017971 TATGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTT
315 TGTGCTTACAGCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTT
64018036 GAGAATAGCAGATTTGG
380 GAGAATAGCAGATTTGG
* * *
64018053 CATCCCTGTGATTATAGGGAACAGATCGAAGATAGTAGATCTGACACTCCTGTGCTTACAGCGAA
1 CATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAA
64018118 GCAAATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTG-AGAATAGCAGATT
66 GCAAATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAGATT
* *
64018182 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGT
130 TGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGC
*
64018247 GAAGCAGATCGAAGATTTTAGCATGGTATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA
195 GAAGCAGATCGAAGATTTTAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGA
*
64018312 TTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTTACA
260 TTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACA
* * *
64018377 ACGAAGCAGATTGAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAGAATAGCA
325 GCGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAGAATAGCA
64018442 GATTTGG
390 GATTTGG
* * *
64018449 TATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCATGTGCTTACAGCGAA
1 CATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAA
* * *
64018514 GCATATCGAAGATTTTAGCATGGCATCCCTGTGTTTATAGGGAATAAGTTGAAGATAGCAGATTT
66 GCAAATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
* * * *
64018579 GGCATCCTTGTTTTTATAGGGAACAGATCGAAGATAGTAGATTTGACACTCCTGTGCTTACAGCG
131 GGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCG
64018644 AAGCAGATCGAAGATTTTAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGAT
196 AAGCAGATCGAAGATTTTAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGAT
* *
64018709 TTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCAGACATTCCTGTGCTTACAG
261 TTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAG
* * *
64018774 CGAAGTAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAAATAGAAG
326 CGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAGAATAGCAG
64018839 ATTTGG
391 ATTTGG
* * * * *
64018845 CATCCCTGTGTTTACAGGGAACAAATCGAAGATAGCAGATCTAACACTCCTGTGATTATAGCAAA
1 CATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAA
*
64018910 GCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGACA-ATT
66 GCAAATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAG-CAGATT
64018974 TG
130 TG
64018976 ACACTCCTGA
Statistics
Matches: 829, Mismatches: 80, Indels: 28
0.88 0.09 0.03
Matches are distributed among these distances:
395 17 0.02
396 774 0.93
397 34 0.04
398 4 0.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (396 bp):
CATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGAA
GCAAATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAGATTT
GGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCG
AAGCAGATCGAAGATTTTAGCATGGCATCCCTATGTTTATAGGGAACAAGTTGAAGATAGCAGAT
TTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAG
CGAAGCAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAGAATAGCAG
ATTTGG
Found at i:64019254 original size:20 final size:20
Alignment explanation
Indices: 64019227--64019273 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
64019217 CCAAATGCCT
*
64019227 AAAACCCAGCTAAATTACCC
1 AAAACCCAGCTAAACTACCC
*
64019247 ATAACCCAGCTAAACTACCC
1 AAAACCCAGCTAAACTACCC
64019267 AAAACCC
1 AAAACCC
64019274 GGTACCCATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.45, C:0.38, G:0.04, T:0.13
Consensus pattern (20 bp):
AAAACCCAGCTAAACTACCC
Found at i:64021045 original size:3 final size:3
Alignment explanation
Indices: 64021037--64021083 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
64021027 ATGTTACTAC
64021037 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
64021084 CACATATGTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:64035013 original size:43 final size:43
Alignment explanation
Indices: 64034952--64035038 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
64034942 GAGGTTTCCA
*
64034952 TACATGTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
1 TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
64034995 TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
1 TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
64035038 T
1 T
64035039 TTTACTTTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.43
Consensus pattern (43 bp):
TACATCTAGTTTAATCAAGATTATTTACAAGTGTATAATTGTG
Found at i:64037285 original size:48 final size:48
Alignment explanation
Indices: 64037049--64037274 Score: 344
Period size: 48 Copynumber: 4.7 Consensus size: 48
64037039 ACAATGCCTC
* * *
64037049 ATGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* *
64037097 ATGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * *
64037145 ATGCCGACGCCATGTCCCAAACATGGTCTTACACTGGCTCACATTACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* *
64037193 ATGCTGATGCCATGTCCCAGACATGATCTTACACTGGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* *
64037241 ATGCCAATGCCATATCCCAGACATGGTCTTACAC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACAC
64037275 GGTTACACAT
Statistics
Matches: 163, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 163 1.00
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
Found at i:64040121 original size:46 final size:47
Alignment explanation
Indices: 64039989--64040185 Score: 190
Period size: 46 Copynumber: 4.2 Consensus size: 47
64039979 TAGATCGATT
* ** * *
64039989 TTACACTGGCTCTCATCTATCGGTGTC-GATGCCATGTCCCAGATAGGTC
1 TTACACTAGCTCTCATC--TCAATGTCTGATG-CATGTCCCAGACATGTC
* *
64040038 TTACACTAGCTTGTATATCTCAA-GTCTGATGCATGTCCCAGACATGTC
1 TTACACTAGC-TCT-CATCTCAATGTCTGATGCATGTCCCAGACATGTC
* *
64040086 TTACATTAGCTCTCATCTCAATGTC-GATGCATGTCCCAGAAATGTC
1 TTACACTAGCTCTCATCTCAATGTCTGATGCATGTCCCAGACATGTC
* *
64040132 TTACACTGGCTCTCA--T-AATGTGCCTGATGCATGTCCTAGACATGTC
1 TTACACTAGCTCTCATCTCAATGT--CTGATGCATGTCCCAGACATGTC
64040178 TTACACTA
1 TTACACTA
64040186 ACACACATAT
Statistics
Matches: 125, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
43 5 0.04
44 1 0.01
45 1 0.01
46 66 0.53
47 5 0.04
48 27 0.22
49 15 0.12
50 2 0.02
51 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.32
Consensus pattern (47 bp):
TTACACTAGCTCTCATCTCAATGTCTGATGCATGTCCCAGACATGTC
Found at i:64044277 original size:40 final size:40
Alignment explanation
Indices: 64044222--64044468 Score: 370
Period size: 40 Copynumber: 6.2 Consensus size: 40
64044212 GAATGATACT
* * * *
64044222 CGGGCTAAGTCCCGAAGGCATTTATGCTAGTGGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
64044262 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
*
64044302 CGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
64044342 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
* *
64044382 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
* * * ** *
64044422 CGGGTTAAGACCCAAAGGCAATTGTGCTTGTGGTTATATC
1 CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
64044462 C-GGCTAA
1 CGGGCTAA
64044469 ATTCCGAAGA
Statistics
Matches: 190, Mismatches: 17, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
39 5 0.03
40 185 0.97
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATC
Found at i:64052321 original size:40 final size:40
Alignment explanation
Indices: 64052266--64052512 Score: 365
Period size: 40 Copynumber: 6.2 Consensus size: 40
64052256 TGAATGATAC
* * *
64052266 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
64052306 CCGGGCTAAGACCCGAAGGCA-TTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
64052345 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
64052385 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
64052425 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
64052465 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
64052505 CC-GGCTAA
1 CCGGGCTAA
64052513 ATTCCGAAGA
Statistics
Matches: 190, Mismatches: 15, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
39 39 0.21
40 151 0.79
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:64052511 original size:119 final size:119
Alignment explanation
Indices: 64052266--64052512 Score: 365
Period size: 119 Copynumber: 2.1 Consensus size: 119
64052256 TGAATGATAC
* *
64052266 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTGT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTGT
* * *
64052331 GCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
66 GCGAGTTGCTATACCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTTATAT
*
64052385 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCA-TT
* **
64052449 GTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
64 GTGCGAGTTGCTATACCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGGTTATAT
64052505 CC-GGCTAA
1 CCGGGCTAA
64052513 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
119 61 0.53
120 52 0.45
121 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATTGT
GCGAGTTGCTATACCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGGTTATAT
Found at i:64054006 original size:23 final size:25
Alignment explanation
Indices: 64053968--64054019 Score: 90
Period size: 23 Copynumber: 2.2 Consensus size: 25
64053958 ATGTGATTAA
64053968 TTGATAGTGTGGTGATTTCTGACAT
1 TTGATAGTGTGGTGATTTCTGACAT
64053993 TTGAT-GTGT-GTGATTTCTGACAT
1 TTGATAGTGTGGTGATTTCTGACAT
64054016 TTGA
1 TTGA
64054020 ATTTGTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 18 0.67
24 4 0.15
25 5 0.19
ACGTcount: A:0.19, C:0.08, G:0.27, T:0.46
Consensus pattern (25 bp):
TTGATAGTGTGGTGATTTCTGACAT
Found at i:64060387 original size:40 final size:40
Alignment explanation
Indices: 64060332--64060559 Score: 366
Period size: 40 Copynumber: 5.7 Consensus size: 40
64060322 TTGAATGATA
* * * *
64060332 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
64060372 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
64060412 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
64060452 CCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
64060492 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
64060532 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
64060560 TTGTGGTTAT
Statistics
Matches: 176, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 176 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:64063935 original size:18 final size:19
Alignment explanation
Indices: 64063914--64063949 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
64063904 AATAAAGAAA
*
64063914 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
64063932 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
64063950 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:64065332 original size:29 final size:29
Alignment explanation
Indices: 64065290--64065421 Score: 237
Period size: 29 Copynumber: 4.5 Consensus size: 29
64065280 AAAATTGTAC
64065290 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
64065319 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
*
64065348 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATAT
*
64065378 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATAT
64065407 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64065422 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
29 72 0.71
30 29 0.29
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:64065377 original size:59 final size:58
Alignment explanation
Indices: 64065290--64065421 Score: 237
Period size: 59 Copynumber: 2.3 Consensus size: 58
64065280 AAAATTGTAC
64065290 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
* *
64065348 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAACTGAAAATATAT
64065407 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
64065422 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 23 0.32
59 48 0.68
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAACTGAAAATATAT
Found at i:64065410 original size:88 final size:88
Alignment explanation
Indices: 64065261--64065421 Score: 261
Period size: 88 Copynumber: 1.8 Consensus size: 88
64065251 GACAAGATTG
* *
64065261 GCACTAAGTGTGCGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACTA
1 GCACTAAGTGTGCGGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACTA
64065326 AGTGTGCGAACTGAAAATATATA
66 AGTGTGCGAACTGAAAATATATA
* * *
64065349 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCG-GTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
64065413 AAGTGTGCG
65 AAGTGTGCG
64065422 GATTCACTAT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
88 66 0.99
89 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (88 bp):
GCACTAAGTGTGCGGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACTA
AGTGTGCGAACTGAAAATATATA
Found at i:64065433 original size:29 final size:29
Alignment explanation
Indices: 64065261--64065423 Score: 213
Period size: 29 Copynumber: 5.6 Consensus size: 29
64065251 GACAAGATTG
** * * *
64065261 GCACTAAGTGTGCGGTTTAAAAATTGTACA
1 GCACTAAGTGTGCGGACTGAAAA-TATATA
*
64065291 GCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGGACTGAAAATATATA
*
64065320 GCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGGACTGAAAATATATA
64065349 GCACTAAGTGTGC-GAGCTGAAAATTATATA
1 GCACTAAGTGTGCGGA-CTGAAAA-TATATA
64065379 GCACTAAGTGTGC-GAGCTGAAAATATATA
1 GCACTAAGTGTGCGGA-CTGAAAATATATA
64065408 GCACTAAGTGTGCGGA
1 GCACTAAGTGTGCGGA
64065424 TTCACTATAT
Statistics
Matches: 123, Mismatches: 7, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
28 1 0.01
29 72 0.59
30 50 0.41
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGGACTGAAAATATATA
Found at i:64070659 original size:48 final size:46
Alignment explanation
Indices: 64070587--64070713 Score: 139
Period size: 46 Copynumber: 2.7 Consensus size: 46
64070577 CTCAACAAGT
* * *
64070587 TGATGCCATGTCCTAGACAGGTCTTACACTAGCT-TGTATATCTCTAGGC
1 TGATG-CATGTCCTAGACATGTCTTACACTAGCTCT-CATA-ATCT-GGC
* *
64070636 TGATGCATGTCCTAGACATGTCTTACACTGGCTCTCATAATGTGGC
1 TGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAATCTGGC
* * *
64070682 CGATGCATGTCCCAGACATGTCTTACATTAGC
1 TGATGCATGTCCTAGACATGTCTTACACTAGC
64070714 ACACATATCA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
46 31 0.46
47 2 0.03
48 29 0.43
49 6 0.09
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.31
Consensus pattern (46 bp):
TGATGCATGTCCTAGACATGTCTTACACTAGCTCTCATAATCTGGC
Found at i:64077488 original size:15 final size:17
Alignment explanation
Indices: 64077468--64077499 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
64077458 TAAAATACTT
64077468 GTGTTTC-T-CATCAAG
1 GTGTTTCATGCATCAAG
64077483 GTGTTTCATGCATCAAG
1 GTGTTTCATGCATCAAG
64077500 ATTTTTATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 1 0.07
17 7 0.47
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.38
Consensus pattern (17 bp):
GTGTTTCATGCATCAAG
Found at i:64079798 original size:22 final size:22
Alignment explanation
Indices: 64079770--64079814 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
64079760 GCTTAAGAGG
64079770 TCTTATACCTCTCTTGACGTGC
1 TCTTATACCTCTCTTGACGTGC
64079792 TCTTATACCTCTCTTGACGTGC
1 TCTTATACCTCTCTTGACGTGC
64079814 T
1 T
64079815 TGCCCCTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.31, G:0.13, T:0.42
Consensus pattern (22 bp):
TCTTATACCTCTCTTGACGTGC
Found at i:64085469 original size:46 final size:45
Alignment explanation
Indices: 64085344--64085548 Score: 150
Period size: 46 Copynumber: 4.5 Consensus size: 45
64085334 GTGTCAATGC
* * * *
64085344 CATGTCCCAGACATGGTCTTACACTG-ACACATCTAGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGCACTCGTCTCGAAGCCGATG
* *
64085389 CATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGAAGCCGGTG
1 CATGTCCCAGACATGTCTTACACT-GCACT-CGTCTCGAAGCCGATG
* **
64085435 CATGTCCTAGACATGTCTTACACTAGCACTCGTCTC-AATGTTGATG
1 CATGTCCCAGACATGTCTTACACT-GCACTCGTCTCGAA-GCCGATG
* * * * **
64085481 CCATAT-CCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACT-GCACTCGT-CTCGAAGCCGATG
*
64085528 CATGTCCCAAACATGTCTTAC
1 CATGTCCCAGACATGTCTTAC
64085549 CTAGCTCACG
Statistics
Matches: 126, Mismatches: 24, Indels: 19
0.75 0.14 0.11
Matches are distributed among these distances:
44 10 0.08
45 17 0.13
46 65 0.52
47 33 0.26
48 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGCACTCGTCTCGAAGCCGATG
Found at i:64090251 original size:17 final size:17
Alignment explanation
Indices: 64090225--64090258 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
64090215 AGACCGTGTG
*
64090225 TCACATACGGCATAGAC
1 TCACACACGGCATAGAC
64090242 TCACACACGGCATAGAC
1 TCACACACGGCATAGAC
64090259 ACACGCCTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.32, G:0.18, T:0.15
Consensus pattern (17 bp):
TCACACACGGCATAGAC
Found at i:64095420 original size:15 final size:15
Alignment explanation
Indices: 64095402--64095454 Score: 97
Period size: 15 Copynumber: 3.5 Consensus size: 15
64095392 TATGTTTATT
*
64095402 TTGTTCTAGTTTGGA
1 TTGTTCTACTTTGGA
64095417 TTGTTCTACTTTGGA
1 TTGTTCTACTTTGGA
64095432 TTGTTCTACTTTGGA
1 TTGTTCTACTTTGGA
64095447 TTGTTCTA
1 TTGTTCTA
64095455 GTTTCTTTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.13, C:0.11, G:0.21, T:0.55
Consensus pattern (15 bp):
TTGTTCTACTTTGGA
Found at i:64097349 original size:43 final size:43
Alignment explanation
Indices: 64097297--64097456 Score: 134
Period size: 43 Copynumber: 3.7 Consensus size: 43
64097287 ATAATGCCGA
* *
64097297 GTCCTCAGACGTGGTCTTACA-TATAATTCAGTATCGATGCCTCT
1 GTCC-CAGACATGGTCTTACACTATAATTCAG-ATCGATGCCTAT
* ** * *
64097341 GTCCCAGACAAGGTCTT--A-TATGAAAACAGATACGATACCGAT
1 GTCCCAGACATGGTCTTACACTAT-AATTCAGAT-CGATGCCTAT
*
64097383 GT-CCAGACATGGTCTTACACGTA-AATTTCAAATCGATGCCTAT
1 GTCCCAGACATGGTCTTACAC-TATAA-TTCAGATCGATGCCTAT
* *
64097426 GTCCCAGACACGGTCTTACACGATAATTCAG
1 GTCCCAGACATGGTCTTACACTATAATTCAG
64097457 GTCAATACCA
Statistics
Matches: 91, Mismatches: 16, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
41 19 0.21
42 14 0.15
43 29 0.32
44 27 0.30
45 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACTATAATTCAGATCGATGCCTAT
Found at i:64097435 original size:44 final size:41
Alignment explanation
Indices: 64097329--64097448 Score: 116
Period size: 44 Copynumber: 2.9 Consensus size: 41
64097319 ATAATTCAGT
* * * *
64097329 ATCGATGCCTCTGTCCCAGACAAGGTCTTATATGAAAACAG
1 ATCGATGCCTATGTCCCAGACAAGGTCTTACACGAAAACAA
* * * *
64097370 ATACGATACCGATGT-CCAGACATGGTCTTACACGTAAATTTCAA
1 AT-CGATGCCTATGTCCCAGACAAGGTCTTACACG-AAA--ACAA
*
64097414 ATCGATGCCTATGTCCCAGACACGGTCTTACACGA
1 ATCGATGCCTATGTCCCAGACAAGGTCTTACACGA
64097449 TAATTCAGGT
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
41 18 0.29
42 12 0.19
43 11 0.17
44 22 0.35
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (41 bp):
ATCGATGCCTATGTCCCAGACAAGGTCTTACACGAAAACAA
Found at i:64103658 original size:26 final size:26
Alignment explanation
Indices: 64103579--64103661 Score: 109
Period size: 26 Copynumber: 3.3 Consensus size: 26
64103569 CTAAGTGTGC
* *
64103579 GTGTGCGGTTGATCATATAGCACTAA
1 GTGTGCGATTGATTATATAGCACTAA
*
64103605 GTGTGCGAGTTGA-T-CAT-GCACTAA
1 GTGTGCGA-TTGATTATATAGCACTAA
64103629 GTGTGCGATTGATTATATAGCACTAA
1 GTGTGCGATTGATTATATAGCACTAA
64103655 GTGTGCG
1 GTGTGCG
64103662 GACTCACTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
23 4 0.08
24 16 0.33
25 4 0.08
26 21 0.43
27 4 0.08
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (26 bp):
GTGTGCGATTGATTATATAGCACTAA
Found at i:64108057 original size:27 final size:28
Alignment explanation
Indices: 64108001--64108071 Score: 117
Period size: 27 Copynumber: 2.6 Consensus size: 28
64107991 AAATTTGTAC
64108001 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
64108029 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
64108056 AGCACTAAGCGTGCGA
1 AGCACTAAGTGTGCGA
64108072 CCACTATATG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:64111531 original size:73 final size:73
Alignment explanation
Indices: 64111412--64111557 Score: 283
Period size: 73 Copynumber: 2.0 Consensus size: 73
64111402 GAGTTGAGTC
64111412 TACTGATTTAAAGGGGGTACCAGCGATAATATCTTCAATGACCGCTCGGAGATATGTGAAAAAGG
1 TACTGATTTAAAGGGGGTACCAGCGATAATATCTTCAATGACCGCTCGGAGATATGTGAAAAAGG
64111477 GGTGTGAA
66 GGTGTGAA
*
64111485 TACTGATTTAAAGGGGGTACCAGCGATAATATCTTCAATGGCCGCTCGGAGATATGTGAAAAAGG
1 TACTGATTTAAAGGGGGTACCAGCGATAATATCTTCAATGACCGCTCGGAGATATGTGAAAAAGG
64111550 GGTGTGAA
66 GGTGTGAA
64111558 ACATACCTTG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (73 bp):
TACTGATTTAAAGGGGGTACCAGCGATAATATCTTCAATGACCGCTCGGAGATATGTGAAAAAGG
GGTGTGAA
Found at i:64116485 original size:27 final size:28
Alignment explanation
Indices: 64116429--64116499 Score: 117
Period size: 27 Copynumber: 2.6 Consensus size: 28
64116419 AAATTTGTAC
64116429 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
64116457 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
64116484 AGCACTAAGCGTGCGA
1 AGCACTAAGTGTGCGA
64116500 ACCCACTATA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:64118367 original size:39 final size:40
Alignment explanation
Indices: 64118088--64118371 Score: 405
Period size: 40 Copynumber: 7.2 Consensus size: 40
64118078 CGGATGATAA
* *
64118088 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCC
* * *
64118128 AGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTCT
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
64118168 TGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
64118208 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* *
64118248 CGAAGGCATTTGTGCGAGTTACTATAACCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
64118288 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-AGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* * * *
64118327 CGAAGACATTTGAGCGAG-TAGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCC
64118366 CGAAGG
1 CGAAGG
64118372 TACTTGGTTT
Statistics
Matches: 223, Mismatches: 18, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
38 5 0.02
39 37 0.17
40 180 0.81
41 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:64124039 original size:25 final size:25
Alignment explanation
Indices: 64123992--64124039 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64123982 TTATAATATG
* *
64123992 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
*
64124017 AAAATGACCATTATACCCTTAGG
1 AAAATGACCATTATACCCCTAGG
64124040 GTTTTATATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:64124100 original size:20 final size:20
Alignment explanation
Indices: 64124075--64124137 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
64124065 ATTTTGATAA
64124075 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
64124095 ACATGACATGTATGAGATGC
1 ACATGATATGTATGATATGC
64124115 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
64124135 ACA
1 ACA
64124138 CGAGATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:64124259 original size:46 final size:47
Alignment explanation
Indices: 64124192--64124288 Score: 153
Period size: 48 Copynumber: 2.1 Consensus size: 47
64124182 AGGAAGTGCA
64124192 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
*
64124238 AAAGGGCTTATTCCCCAGTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
64124286 AAA
1 AAA
64124289 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
46 22 0.47
47 2 0.04
48 23 0.49
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.30
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:64124305 original size:25 final size:24
Alignment explanation
Indices: 64124191--64124309 Score: 156
Period size: 23 Copynumber: 5.0 Consensus size: 24
64124181 GAGGAAGTGC
64124191 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
64124215 AAAAGGGCTTATG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
64124238 -AAAGGGCTTATTCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
64124261 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
64124286 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
64124310 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 3, Indels: 13
0.84 0.03 0.13
Matches are distributed among these distances:
22 11 0.13
23 26 0.31
24 19 0.22
25 20 0.24
26 9 0.11
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:64125277 original size:13 final size:13
Alignment explanation
Indices: 64125252--64125283 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
64125242 ATAACACATC
64125252 TCAAAAC-ATGCA
1 TCAAAACTATGCA
64125264 TCAAAACTATGCA
1 TCAAAACTATGCA
64125277 T-AAAACT
1 TCAAAACT
64125284 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.50, C:0.22, G:0.06, T:0.22
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:64135078 original size:40 final size:40
Alignment explanation
Indices: 64135020--64135134 Score: 124
Period size: 40 Copynumber: 2.9 Consensus size: 40
64135010 ATGCTTATCT
* *
64135020 TATTAGCACTAT-GCTGCTCTTGATAGTACTTTTGTACTCC
1 TATTAGCACTATAG-TGCTCTTGATAGCACATTTGTACTCC
* * *
64135060 TATTAGCACTATAGTGCTCCTGATAGCACATTTGTGCTCT
1 TATTAGCACTATAGTGCTCTTGATAGCACATTTGTACTCC
* * * * *
64135100 TGTTTGCACTACAGTGCCCTTGATTGCACATTTGT
1 TATTAGCACTATAGTGCTCTTGATAGCACATTTGT
64135135 GCCGTATTAT
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 62 0.98
41 1 0.02
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (40 bp):
TATTAGCACTATAGTGCTCTTGATAGCACATTTGTACTCC
Found at i:64135086 original size:20 final size:19
Alignment explanation
Indices: 64135023--64135098 Score: 55
Period size: 20 Copynumber: 3.8 Consensus size: 19
64135013 CTTATCTTAT
*
64135023 TAGCACTATGCTGCTCTTGA
1 TAGCACTATG-TGCTCCTGA
* * *
64135043 TAGTACTTTTGTACTCCT-A
1 TAGCAC-TATGTGCTCCTGA
64135062 TTAGCACTATAGTGCTCCTGA
1 -TAGCACTAT-GTGCTCCTGA
*
64135083 TAGCACATTTGTGCTC
1 TAGCAC-TATGTGCTC
64135099 TTGTTTGCAC
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
19 3 0.07
20 34 0.79
21 6 0.14
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (19 bp):
TAGCACTATGTGCTCCTGA
Found at i:64135108 original size:20 final size:20
Alignment explanation
Indices: 64135080--64135137 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
64135070 ATAGTGCTCC
* *
64135080 TGATAGCACATTTGTGCTCT
1 TGATTGCACATTTGTGCCCT
* **
64135100 TGTTTGCAC-TACAGTGCCCT
1 TGATTGCACAT-TTGTGCCCT
64135120 TGATTGCACATTTGTGCC
1 TGATTGCACATTTGTGCC
64135138 GTATTATGCA
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (20 bp):
TGATTGCACATTTGTGCCCT
Found at i:64135148 original size:40 final size:41
Alignment explanation
Indices: 64135034--64135149 Score: 114
Period size: 40 Copynumber: 2.9 Consensus size: 41
64135024 AGCACTATGC
* * * * * *
64135034 TGCTCTTGATAGTACTTTTGTACTCCTATTA-GCACTATAG
1 TGCTCCTGATAGCACATTTGTGCTCGTATTATGCACTACAG
* *
64135074 TGCTCCTGATAGCACATTTGTGCTCTTGTT-TGCACTACAG
1 TGCTCCTGATAGCACATTTGTGCTCGTATTATGCACTACAG
*
64135114 TGC-CCTTGATTGCACATTTGTGC-CGTATTATGCACT
1 TGCTCC-TGATAGCACATTTGTGCTCGTATTATGCACT
64135150 CTGGTGCCAT
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
39 6 0.10
40 57 0.90
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.40
Consensus pattern (41 bp):
TGCTCCTGATAGCACATTTGTGCTCGTATTATGCACTACAG
Found at i:64139288 original size:40 final size:40
Alignment explanation
Indices: 64139226--64139483 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
64139216 AAGCCAAGTA
* * * *
64139226 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
64139265 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
64139305 CCTTCGGGACTTAGCCTGGATATAGAAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64139345 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64139385 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
64139425 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
64139465 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64139484 TTATCATCCA
Statistics
Matches: 201, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.06
40 188 0.94
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64147520 original size:40 final size:40
Alignment explanation
Indices: 64147458--64147712 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
64147448 AAGCCAAGTA
* * * *
64147458 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
64147497 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64147537 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64147577 -CTTCGGGACTTAGCCCGGATATAGTAA-TCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64147615 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
64147654 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
64147694 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64147713 TTATCATCCA
Statistics
Matches: 198, Mismatches: 12, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
38 33 0.17
39 59 0.30
40 106 0.54
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64147666 original size:117 final size:120
Alignment explanation
Indices: 64147458--64147712 Score: 369
Period size: 117 Copynumber: 2.2 Consensus size: 120
64147448 AAGCCAAGTA
* * * * *
64147458 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTAATCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
* *
64147522 TAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATA-TAG-CAACTCGCACAAATG
66 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTC-ACTAGCACAAATG
*
64147577 -CTTCGGGACTTAGCCCGGATATAG-TAATCGCACAAATGCCTTC-GGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCTAATCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
*
64147639 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAATG
66 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCACAAATG
64147694 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64147713 TTATCATCCA
Statistics
Matches: 123, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
116 1 0.01
117 66 0.54
118 46 0.37
119 10 0.08
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (120 bp):
CCTTCGGGACTTAGCCCGGATATAGCTAATCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCACAAATG
Found at i:64150655 original size:80 final size:79
Alignment explanation
Indices: 64150551--64150762 Score: 309
Period size: 80 Copynumber: 2.7 Consensus size: 79
64150541 TCTTCGGAAT
* *
64150551 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
64150615 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* *
64150630 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
64150695 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * * * *
64150710 TTAGCCTGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCTGGGTAT
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTAT
64150763 CATTCAAATG
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
79 5 0.04
80 113 0.95
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
AATGCCTTCGGGTC
Found at i:64150758 original size:40 final size:41
Alignment explanation
Indices: 64150571--64150755 Score: 261
Period size: 40 Copynumber: 4.6 Consensus size: 41
64150561 ATAACCACAA
* * *
64150571 GCACAATTGCCTTCGGGTCTTAACCCGGGTAT-AGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAGCAACTC
64150611 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAGCAACTC
*
64150651 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAGCAACTC
* * *
64150691 GCACAAATGCCTTCGGGTCTTAGCCTGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAGCAACTC
* *
64150731 GCATAAATGCCTTCGGGGCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCC
64150756 TGGGTATCAT
Statistics
Matches: 132, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 128 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAAGCAACTC
Found at i:64158872 original size:40 final size:40
Alignment explanation
Indices: 64158776--64158981 Score: 267
Period size: 40 Copynumber: 5.2 Consensus size: 40
64158766 TTCTTCGAAT
* ** *
64158776 TTAG-CCGGATATAACCACAAGCAC-AATTCCTTCGGGT-
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
64158813 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
64158853 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* *
64158893 TTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
64158933 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGGC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
64158973 TTAGCCCGG
1 TTAGCCCGG
64158982 GTATCATTCA
Statistics
Matches: 148, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
37 3 0.02
38 15 0.10
39 12 0.08
40 117 0.79
41 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:64158910 original size:80 final size:79
Alignment explanation
Indices: 64158776--64158981 Score: 301
Period size: 80 Copynumber: 2.6 Consensus size: 79
64158766 TTCTTCGAAT
* * *
64158776 TTAG-CCGGATATAACCACAAGCAC-AATTCCTTCGGGT-TTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
64158838 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
*
64158853 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCAC
64158918 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
* * *
64158933 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGG
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAACCCGG
64158982 GTATCATTCA
Statistics
Matches: 116, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
77 5 0.04
78 16 0.14
79 12 0.10
80 82 0.71
81 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACA
AATGCCTTCGGGTC
Done.