Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 210 of 425
Found at i:64179269 original size:32 final size:34
Alignment explanation
Indices: 64179233--64179297 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
64179223 TAACAGTGGT
*
64179233 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
64179265 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
64179298 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:64181172 original size:26 final size:26
Alignment explanation
Indices: 64181141--64181274 Score: 232
Period size: 26 Copynumber: 5.2 Consensus size: 26
64181131 TGAAATGCCC
64181141 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
64181167 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
64181193 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
64181219 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
64181245 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
64181271 ATCA
1 ATCA
64181275 ATTTGTACCA
Statistics
Matches: 103, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 103 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:64181958 original size:2 final size:2
Alignment explanation
Indices: 64181951--64181975 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
64181941 AAAATTTATG
64181951 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
64181976 AGTGATAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:64183182 original size:12 final size:12
Alignment explanation
Indices: 64183161--64183196 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
64183151 ATTCTGCCTG
64183161 ATAA-AAAAATA
1 ATAATAAAAATA
64183172 ATAATAAAAATA
1 ATAATAAAAATA
*
64183184 AAAATAAAAATA
1 ATAATAAAAATA
64183196 A
1 A
64183197 AAAAATTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (12 bp):
ATAATAAAAATA
Found at i:64183183 original size:6 final size:6
Alignment explanation
Indices: 64183165--64183199 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
64183155 TGCCTGATAA
*
64183165 AAAAAT AATAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
64183200 AATTGGTGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:64183444 original size:15 final size:15
Alignment explanation
Indices: 64183424--64183488 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
64183414 GTATCTTAGG
64183424 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
64183439 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
64183454 TTT-TTCTA-TCTTAGA
1 TTTCTT-TATTC-TGGA
*
64183469 TTTCTTTATT-TGGT
1 TTTCTTTATTCTGGA
64183483 TTTCTT
1 TTTCTT
64183489 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 12 0.29
15 26 0.63
16 3 0.07
ACGTcount: A:0.11, C:0.12, G:0.12, T:0.65
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:64187059 original size:27 final size:27
Alignment explanation
Indices: 64187029--64187182 Score: 164
Period size: 27 Copynumber: 5.5 Consensus size: 27
64187019 ATAGTGAATC
64187029 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * **
64187056 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AGCT
64187084 CGCACACTTAGTGCTATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAGCT
* * *
64187111 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGCTATA-AA-ATCAGCT
* **
64187140 CGCACACTTAGTGCCATATATTTCCAGCT
1 CGCACACTTAGTGCTATA-AAAT-CAGCT
*
64187169 TGCACACTTAGTGC
1 CGCACACTTAGTGC
64187183 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
27 40 0.37
28 27 0.25
29 40 0.37
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAGCT
Found at i:64187076 original size:29 final size:28
Alignment explanation
Indices: 64187029--64187182 Score: 145
Period size: 29 Copynumber: 5.5 Consensus size: 28
64187019 ATAGTGAATC
64187029 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* * **
64187056 CGCACACATAGTGC-TATATAATCAAATT
1 CGCACACTTAGTGCATATAAAATC-AGCT
64187084 CGCACACTTAGTGC-TATAAAATCAGCT
1 CGCACACTTAGTGCATATAAAATCAGCT
* ** *
64187111 CGCACACATAGTGCTATATAATTTGAGCT
1 CGCACACTTAGTGC-ATATAAAATCAGCT
**
64187140 CGCACACTTAGTGCCATAT-ATTTCCAGCT
1 CGCACACTTAGTG-CATATAAAAT-CAGCT
*
64187169 TGCACACTTAGTGC
1 CGCACACTTAGTGC
64187183 CATTCTCGTC
Statistics
Matches: 107, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
27 36 0.34
28 28 0.26
29 42 0.39
30 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCATATAAAATCAGCT
Found at i:64187100 original size:55 final size:55
Alignment explanation
Indices: 64187029--64187132 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
64187019 ATAGTGAATC
64187029 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
64187084 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
1 CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAAT
64187133 TTGAGCTCGC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATAAAATCAGCTCGCACACATAGTGCTATATAATCAAATT
Found at i:64188762 original size:51 final size:49
Alignment explanation
Indices: 64188686--64188870 Score: 246
Period size: 51 Copynumber: 3.7 Consensus size: 49
64188676 ACAGGTCGCA
64188686 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CGAAAACT-TGATCACG
64188737 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCGAAAACT-TGATCACG
* * ** * * *
64188788 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA-TTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GAAAACTTGATCACG
*
64188837 TGTGTAGTAGTAAGTGCAGGCTACTATGCGTACC
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACC
64188871 AGATAGCTTC
Statistics
Matches: 121, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
49 36 0.30
50 3 0.02
51 81 0.67
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGAAAACTTGATCACG
Found at i:64188863 original size:100 final size:102
Alignment explanation
Indices: 64188686--64188870 Score: 268
Period size: 100 Copynumber: 1.8 Consensus size: 102
64188676 ACAGGTCGCA
* *
64188686 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGAAAACTGTGATCACATGTGTAGTACTAAG
64188751 TGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
66 TGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
* ** * * *
64188788 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTA-T-TGGTCGCATGTGTAGTAGTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTC-GAAAACTGTGATCACATGTGTAGTACTAA
64188850 GTGCAGGCTACTATGCGTACC
65 GTGCAGGCTACTATGCGTACC
64188871 AGATAGCTTC
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
100 38 0.51
101 2 0.03
102 34 0.46
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (102 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGAAAACTGTGATCACATGTGTAGTACTAAG
TGCAGGCTACTATGCGTACCCGAAAACTATGATCACG
Found at i:64207210 original size:18 final size:18
Alignment explanation
Indices: 64207189--64207254 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 18
64207179 AGAATGAGAG
64207189 AATGAAAGAGAAATATTA
1 AATGAAAGAGAAATATTA
* *
64207207 AATGAAGGATGAATGATATGAGA
1 AATGAAAGA-GAA--ATAT--TA
64207230 GAATGAAAGAGAAATATTA
1 -AATGAAAGAGAAATATTA
64207249 AATGAA
1 AATGAA
64207255 GGATGAATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
18 14 0.37
19 4 0.11
21 8 0.21
23 4 0.11
24 8 0.21
ACGTcount: A:0.56, C:0.00, G:0.23, T:0.21
Consensus pattern (18 bp):
AATGAAAGAGAAATATTA
Found at i:64207229 original size:42 final size:42
Alignment explanation
Indices: 64207182--64207265 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
64207172 GAATGAGAGA
64207182 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
1 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
64207224 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
1 ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
64207266 GGATGATTGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.52, C:0.00, G:0.26, T:0.21
Consensus pattern (42 bp):
ATGAGAGAATGAAAGAGAAATATTAAATGAAGGATGAATGAT
Found at i:64212000 original size:46 final size:46
Alignment explanation
Indices: 64211947--64212122 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
64211937 TATTTGGGCA
64211947 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
64211993 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
64212040 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
64212086 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64212123 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:64212102 original size:93 final size:93
Alignment explanation
Indices: 64211943--64212114 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64211933 GGGATATTTG
* *
64211943 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
64212008 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
64212036 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
64212101 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
64212115 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:64215180 original size:29 final size:29
Alignment explanation
Indices: 64215136--64215199 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
64215126 TTAAACCCCA
* * *
64215136 AATGTGTCCCTTTCTTCTTGCTACAATAG
1 AATGTATCCCTCTCTTCTTGCTACAACAG
64215165 AATGTATCCCTCTCTTCTTGCTACAACAG
1 AATGTATCCCTCTCTTCTTGCTACAACAG
64215194 AATGTA
1 AATGTA
64215200 CCAAAAGCAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (29 bp):
AATGTATCCCTCTCTTCTTGCTACAACAG
Found at i:64220554 original size:17 final size:19
Alignment explanation
Indices: 64220532--64220569 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
64220522 ATTAATATAA
64220532 AATAC-AAT-ATTAAAAAT
1 AATACAAATAATTAAAAAT
*
64220549 AATACAAATAATTCAAAAT
1 AATACAAATAATTAAAAAT
64220568 AA
1 AA
64220570 CTTGCAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 3 0.17
19 10 0.56
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (19 bp):
AATACAAATAATTAAAAAT
Found at i:64222670 original size:93 final size:93
Alignment explanation
Indices: 64222557--64222728 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
64222547 CGCCCATAAG
* * *
64222557 CGAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
64222622 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
64222650 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
64222715 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
64222729 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCAGACTCAAATCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:64222725 original size:46 final size:46
Alignment explanation
Indices: 64222550--64222725 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
64222540 TGTAACCCGC
* * *
64222550 CCATAAGCGAACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
64222596 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
64222646 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
64222689 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
64222726 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:64226190 original size:37 final size:37
Alignment explanation
Indices: 64226137--64226276 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
64226127 CGAATAGTCC
*
64226137 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
64226174 CTACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
64226211 CCACACGTAGTCATCGAGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
64226248 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
64226277 ATATATTTCC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 94 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:64226468 original size:48 final size:48
Alignment explanation
Indices: 64226413--64226787 Score: 639
Period size: 48 Copynumber: 7.9 Consensus size: 48
64226403 CACAATATAC
*
64226413 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
64226461 ACATATCTCGTGCATATTTCACA-TAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
64226508 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
64226556 ACATATCTCGTGCATATTTCACA-TAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
64226603 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
64226651 ACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
* * *
64226699 AGATATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
64226747 ACATATCT-GATACATATTTCACATTAGCCATTCGGCTTTAC
1 ACATATCTCG-TACATATTTCACACTAGCCATTCGGCTTTAC
64226788 AACACACATA
Statistics
Matches: 316, Mismatches: 8, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
47 93 0.29
48 223 0.71
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (48 bp):
ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
Found at i:64226513 original size:95 final size:96
Alignment explanation
Indices: 64226413--64226787 Score: 639
Period size: 95 Copynumber: 3.9 Consensus size: 96
64226403 CACAATATAC
* *
64226413 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTGCATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATAT
64226478 TTCACA-TAGCCATTCGGCTTTACCACATAT
66 TTCACACTAGCCATTCGGCTTTACCACATAT
* *
64226508 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTGCATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATAT
64226573 TTCACA-TAGCCATTCGGCTTTACCACATAT
66 TTCACACTAGCCATTCGGCTTTACCACATAT
*
64226603 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATAT
64226668 TTCACACTAGCCATTCGGCTTTACCACATAT
66 TTCACACTAGCCATTCGGCTTTACCACATAT
* * *
64226699 AGATATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCT-GATACATA
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCG-TACATA
*
64226763 TTTCACATTAGCCATTCGGCTTTAC
65 TTTCACACTAGCCATTCGGCTTTAC
64226788 AACACACATA
Statistics
Matches: 270, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
95 163 0.60
96 107 0.40
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (96 bp):
ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATAT
TTCACACTAGCCATTCGGCTTTACCACATAT
Found at i:64226573 original size:143 final size:144
Alignment explanation
Indices: 64226413--64226787 Score: 648
Period size: 143 Copynumber: 2.6 Consensus size: 144
64226403 CACAATATAC
*
64226413 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTGCATAT
1 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATAT
* *
64226478 TTCACA-TAGCCATTCGGCTTTACCACATATACATATCTCGTGCATATTTCACACTAGCCATTCG
66 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
64226542 GCTTTACCACATAT
131 GCTTTACCACATAT
64226556 ACATATCTCGTGCATATTTCACA-TAGCCATTCGGCTTTACCACATATACATATCTCGTACATAT
1 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATAT
64226620 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
66 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
64226685 GCTTTACCACATAT
131 GCTTTACCACATAT
* * * *
64226699 AGATATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCT-GATACATA
1 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCG-TACATA
*
64226763 TTTCACATTAGCCATTCGGCTTTAC
65 TTTCACACTAGCCATTCGGCTTTAC
64226788 AACACACATA
Statistics
Matches: 221, Mismatches: 8, Indels: 5
0.94 0.03 0.02
Matches are distributed among these distances:
142 46 0.21
143 114 0.52
144 61 0.28
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (144 bp):
ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATAT
TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCG
GCTTTACCACATAT
Found at i:64230147 original size:40 final size:40
Alignment explanation
Indices: 64230103--64230328 Score: 382
Period size: 40 Copynumber: 5.7 Consensus size: 40
64230093 CCAGCATAAT
* *
64230103 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCAAGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
64230143 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
64230183 TG-TCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* *
64230222 TGCTCTTCGGGACTTAGCCCGGATATAACATCAGCACTAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
64230262 TGCTCTTCGGGACTTAGCCCGGACATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* *
64230302 TGCTCTTCGGGACCTAGCCCGGCTATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
64230329 TAACTCTCAA
Statistics
Matches: 175, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 39 0.22
40 136 0.78
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:64230237 original size:79 final size:80
Alignment explanation
Indices: 64230103--64230328 Score: 382
Period size: 79 Copynumber: 2.8 Consensus size: 80
64230093 CCAGCATAAT
* *
64230103 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCAAGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
64230168 TAACACCAGCACGAA
66 TAACACCAGCACGAA
64230183 TG-TCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
* *
64230247 TAACATCAGCACTAA
66 TAACACCAGCACGAA
* * *
64230262 TGCTCTTCGGGACTTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGACCTAGCCCGGCTA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
64230327 TA
66 TA
64230329 TAACTCTCAA
Statistics
Matches: 138, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
79 75 0.54
80 63 0.46
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
TAACACCAGCACGAA
Found at i:64230302 original size:119 final size:120
Alignment explanation
Indices: 64230103--64230328 Score: 382
Period size: 119 Copynumber: 1.9 Consensus size: 120
64230093 CCAGCATAAT
*
64230103 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCAAGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCAAGAATGCTCTTCGGGACTTAGCCCGGACA
*
64230168 TAACACCAGCACGAATG-TCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
66 TAACACCAGCACGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
* * **
64230222 TGCTCTTCGGGACTTAGCCCGGATATAACATCAGCACTAATGCTCTTCGGGACTTAGCCCGGACA
1 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCAAGAATGCTCTTCGGGACTTAGCCCGGACA
*
64230287 TAACACCAGCACGAATGCTCTTCGGGACCTAGCCCGGCTATA
66 TAACACCAGCACGAATGCTCTTCGGGACCTAGCCCGGATATA
64230329 TAACTCTCAA
Statistics
Matches: 99, Mismatches: 7, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
119 77 0.78
120 22 0.22
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (120 bp):
TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCAAGAATGCTCTTCGGGACTTAGCCCGGACA
TAACACCAGCACGAATGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
Found at i:64231653 original size:37 final size:37
Alignment explanation
Indices: 64231600--64231738 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
64231590 CGAATAGTCC
*
64231600 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
64231637 CTACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
64231674 CCACACGTAGTCATCGGGTCTTACCCAGAC-AAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
64231710 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
64231739 ATATATTTCC
Statistics
Matches: 95, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
36 33 0.35
37 62 0.65
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:64231735 original size:73 final size:74
Alignment explanation
Indices: 64231600--64231738 Score: 244
Period size: 73 Copynumber: 1.9 Consensus size: 74
64231590 CGAATAGTCC
* * *
64231600 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCTCTACACGTAGTCATCGGGTCTTACCCGG
1 CCACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGG
64231665 ACATAATCT
66 ACATAATCT
64231674 CCACACGTAGTCATCGGGTCTTACCCAGAC-AAATCTCCACACGTAGTCATCGGGTCTTACCCGG
1 CCACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGG
64231738 A
66 A
64231739 ATATATTTCC
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
73 34 0.55
74 28 0.45
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (74 bp):
CCACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCGG
ACATAATCT
Found at i:64231930 original size:48 final size:48
Alignment explanation
Indices: 64231875--64232354 Score: 785
Period size: 48 Copynumber: 10.1 Consensus size: 48
64231865 CACAATATAC
*
64231875 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
64231923 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
* * *
64231971 ACATATCTTGTGCATATTTCACAATAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
64232019 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
64232067 ACATATCTCGTACATATTTCACACT----A---GGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
64232108 ACATATCTCGTACATATTTTACACTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
* *
64232156 ACATATCTCATACATATTTCACACTAGCCATTCGTCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
64232204 ACATATCTCGTACATATTTCACAGTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
* *
64232252 ATATATCTCGTACATATTTCACAGTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
* * *
64232300 ACATATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
64232348 ACATATC
1 ACATATC
64232355 GGCTTTACCA
Statistics
Matches: 408, Mismatches: 17, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
41 39 0.10
44 1 0.00
45 1 0.00
48 367 0.90
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
Found at i:64232118 original size:185 final size:188
Alignment explanation
Indices: 64231875--64232354 Score: 732
Period size: 185 Copynumber: 2.5 Consensus size: 188
64231865 CACAATATAC
* * *
64231875 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTGCATAT
1 ACATATCTCGTACATATTTCACA--A-CCA-TAGGCTTTACCACATATACATATCTCGTACATAT
** *
64231940 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTTGTGCATATTTCACAATAGCCATTCG
62 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAATAGCCATTCG
64232005 GCTTTACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
127 GCTTTACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
*
64232067 ACATATCTCGTACATATTTCAC-A-C-TAGGCTTTACCACATATACATATCTCGTACATATTTTA
1 ACATATCTCGTACATATTTCACAACCATAGGCTTTACCACATATACATATCTCGTACATATTTCA
* *
64232129 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGTCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAATAGCCATTCGGCTT
*
64232194 TACCACATATACATATCTCGTACATATTTCACAGTAGCCATTCGGCTTTACCACATAT
131 TACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
* * *
64232252 ATATATCTCGTACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 ACATATCTCGTACATATTTCACA--A-CCA-TAGGCTTTACCACATATACATATCTCGTACATAT
* *
64232317 TTCACATTAGCCATTCGACTTTACCACATATACATATC
62 TTCACACTAGCCATTCGGCTTTACCACATATACATATC
64232355 GGCTTTACCA
Statistics
Matches: 265, Mismatches: 16, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
185 173 0.65
187 1 0.00
188 1 0.00
189 1 0.00
190 1 0.00
192 88 0.33
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (188 bp):
ACATATCTCGTACATATTTCACAACCATAGGCTTTACCACATATACATATCTCGTACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAATAGCCATTCGGCTT
TACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATAT
Found at i:64232282 original size:233 final size:233
Alignment explanation
Indices: 64231875--64232322 Score: 797
Period size: 233 Copynumber: 1.9 Consensus size: 233
64231865 CACAATATAC
* * *
64231875 ACATATCTCGTGCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTGCATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* *
64231940 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTTGTGCATATTTCACAATAGCCATTCG
66 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATATTTCACAATAGCCATTCG
64232005 GCTTTACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACA
131 GCTTTACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACA
*
64232070 TATCTCGTACATATTTCACACTAGGCTTTACCACATAT
196 TATCTCATACATATTTCACACTAGGCTTTACCACATAT
*
64232108 ACATATCTCGTACATATTTTACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
* *
64232173 TTCACACTAGCCATTCGTCTTTACCACATATACATATCTCGTACATATTTCACAGTAGCCATTCG
66 TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATATTTCACAATAGCCATTCG
* *
64232238 GCTTTACCACATATATATATCTCGTACATATTTCACAGTAGCCATTCGGCTTTACCACATATACA
131 GCTTTACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACA
64232303 TATCTCATACATATTTCACA
196 TATCTCATACATATTTCACA
64232323 TTAGCCATTC
Statistics
Matches: 204, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
233 204 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (233 bp):
ACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
TTCACACTAGCCATTCGGCTTTACCACATATACATATCTCGTACATATTTCACAATAGCCATTCG
GCTTTACCACATATACATATCTCGTACATATTTCACACTAGCCATTCGGCTTTACCACATATACA
TATCTCATACATATTTCACACTAGGCTTTACCACATAT
Found at i:64232360 original size:22 final size:22
Alignment explanation
Indices: 64232335--64232376 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
64232325 AGCCATTCGA
*
64232335 CTTTACCACATATACATATCGG
1 CTTTACCACATATAAATATCGG
64232357 CTTTACCACATATAAATATC
1 CTTTACCACATATAAATATC
64232377 TCATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.26, G:0.05, T:0.33
Consensus pattern (22 bp):
CTTTACCACATATAAATATCGG
Found at i:64237287 original size:28 final size:28
Alignment explanation
Indices: 64237247--64237305 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
64237237 TATGAGAAAA
64237247 AAACGTTTGGAAACTGATTGGCTTGTGT
1 AAACGTTTGGAAACTGATTGGCTTGTGT
64237275 AAACGTTTGGAAACTGATTGGCTTGTGT
1 AAACGTTTGGAAACTGATTGGCTTGTGT
64237303 AAA
1 AAA
64237306 TAACTCCTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.27, T:0.34
Consensus pattern (28 bp):
AAACGTTTGGAAACTGATTGGCTTGTGT
Found at i:64240225 original size:21 final size:19
Alignment explanation
Indices: 64240179--64240228 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
64240169 TTTATTTTAG
*
64240179 TTTTACTTTTATTTCAATT
1 TTTTCCTTTTATTTCAATT
**
64240198 TAGTCCTTTTATTTTACAATT
1 TTTTCCTTTTA-TTT-CAATT
64240219 TTTTCCTTTT
1 TTTTCCTTTT
64240229 GTTTAACTTG
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 8 0.33
20 3 0.12
21 13 0.54
ACGTcount: A:0.18, C:0.14, G:0.02, T:0.66
Consensus pattern (19 bp):
TTTTCCTTTTATTTCAATT
Found at i:64241771 original size:22 final size:22
Alignment explanation
Indices: 64241729--64241782 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
64241719 TGCACCAGTA
* *
64241729 TATGAAATCCCTTAATTGGTAG
1 TATGAAAGCCCTTAATGGGTAG
64241751 TATGAAAGCCCTGTAA-GGGTAG
1 TATGAAAGCCCT-TAATGGGTAG
* *
64241773 TGTGACAGCC
1 TATGAAAGCC
64241783 TAAAATTGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 24 0.89
23 3 0.11
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (22 bp):
TATGAAAGCCCTTAATGGGTAG
Found at i:64243696 original size:40 final size:40
Alignment explanation
Indices: 64243637--64243842 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
64243627 TGAATGATAC
* *
64243637 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
64243676 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
64243716 -CGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
64243755 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
64243795 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
64243835 CC-GGCTAA
1 CCGGGCTAA
64243843 ATTCCGAAGA
Statistics
Matches: 148, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 52 0.35
40 94 0.64
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:64243851 original size:79 final size:80
Alignment explanation
Indices: 64243633--64243842 Score: 327
Period size: 79 Copynumber: 2.7 Consensus size: 80
64243623 CATTTGAATG
* * *
64243633 ATACCCGGGCTAAG-CCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
64243697 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
64243712 ATA-TCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
64243776 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* *
64243791 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
64243843 ATTCCGAAGA
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
78 8 0.07
79 73 0.62
80 37 0.31
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:64251971 original size:40 final size:40
Alignment explanation
Indices: 64251874--64252057 Score: 264
Period size: 40 Copynumber: 4.6 Consensus size: 40
64251864 ATGATACCCA
* * * *
64251874 GGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT-CG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCCG
64251913 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
* *
64251953 GGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
*
64251993 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCG
1 GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
* *
64252033 GGTTAAGACCCGAAGGCAATTGTGC
1 GGCTAAGACCCGAAGGCATTTGTGC
64252058 TTGTGGTTAT
Statistics
Matches: 132, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 30 0.23
40 102 0.77
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCG
Found at i:64252014 original size:80 final size:80
Alignment explanation
Indices: 64251867--64252077 Score: 311
Period size: 80 Copynumber: 2.7 Consensus size: 80
64251857 CATTTGAATG
* * * *
64251867 ATACCCAGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT-CGGGCTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
64251930 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* *
64251946 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
64252011 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
64252026 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
64252078 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 41 0.34
80 78 0.66
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:64254905 original size:53 final size:53
Alignment explanation
Indices: 64254847--64254952 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
64254837 TCTTTGGAGG
64254847 ACTTGCTATGTAAATGCGATTAAACATTTGAGGATTATTGCACTTCATCAATC
1 ACTTGCTATGTAAATGCGATTAAACATTTGAGGATTATTGCACTTCATCAATC
*
64254900 ACTTGCTATGTAAATGGGATTAAACATTTGAGGATTATTGCACTTCATCAATC
1 ACTTGCTATGTAAATGCGATTAAACATTTGAGGATTATTGCACTTCATCAATC
64254953 GAATACAAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (53 bp):
ACTTGCTATGTAAATGCGATTAAACATTTGAGGATTATTGCACTTCATCAATC
Found at i:64255832 original size:5 final size:6
Alignment explanation
Indices: 64255816--64255858 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
64255806 TATAGATACA
* **
64255816 ATTTTT ATTTTT ATTTTT ACTAAT ATCTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT AT-TTTT ATTTTT ATTTTT
64255859 GGGTTCAGTG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (6 bp):
ATTTTT
Found at i:64260937 original size:25 final size:25
Alignment explanation
Indices: 64260908--64260955 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64260898 TTATAATATG
* * *
64260908 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
64260933 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
64260956 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:64261006 original size:9 final size:9
Alignment explanation
Indices: 64260994--64261050 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
64260984 TTTGATAAAC
64260994 ATGATATGT
1 ATGATATGT
*
64261003 ATGATATGCAC
1 ATGATATG--T
*
64261014 ATGACATGT
1 ATGATATGT
*
64261023 ATGATATGCAC
1 ATGATATG--T
64261034 ATGATATGT
1 ATGATATGT
64261043 ATGATATG
1 ATGATATG
64261051 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:64261017 original size:20 final size:20
Alignment explanation
Indices: 64260992--64261054 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
64260982 ATTTTGATAA
64260992 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
64261012 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
64261032 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
64261052 ACA
1 ACA
64261055 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:64261135 original size:24 final size:24
Alignment explanation
Indices: 64261108--64261282 Score: 284
Period size: 24 Copynumber: 7.4 Consensus size: 24
64261098 GAGGAAGTGC
64261108 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
64261132 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
64261156 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
64261179 -AAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
64261202 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
64261226 -AAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
64261249 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
64261273 AAAAGAGGCT
1 AAAAG-GGCT
64261283 AGGCCTCCAG
Statistics
Matches: 141, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 66 0.47
24 71 0.50
25 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:64261163 original size:23 final size:23
Alignment explanation
Indices: 64261109--64261275 Score: 271
Period size: 23 Copynumber: 7.1 Consensus size: 23
64261099 AGGAAGTGCA
64261109 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
64261132 AAAAGGGCTTATGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
64261156 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
64261179 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
64261202 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
64261226 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
64261249 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
64261273 AAA
1 AAA
64261276 AGAGGCTAGG
Statistics
Matches: 134, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
23 69 0.51
24 65 0.49
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:64261178 original size:47 final size:47
Alignment explanation
Indices: 64261108--64261275 Score: 293
Period size: 47 Copynumber: 3.6 Consensus size: 47
64261098 GAGGAAGTGC
*
64261108 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCTAGTTATT
64261156 -AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATT
*
64261202 AAAAGGGCTTTTGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATT
*
64261249 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
64261276 AGAGGCTAGG
Statistics
Matches: 117, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
46 22 0.19
47 95 0.81
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.32
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATT
Found at i:64261525 original size:31 final size:31
Alignment explanation
Indices: 64261490--64261549 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
64261480 GTTTACAGTT
64261490 AAGGCTTCGGCCCAGTAATATGAAATATGGA
1 AAGGCTTCGGCCCAGTAATATGAAATATGGA
* **
64261521 AAGGCTTCGGCCTAGTGTTATGAAATATG
1 AAGGCTTCGGCCCAGTAATATGAAATATG
64261550 AAATATGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.27
Consensus pattern (31 bp):
AAGGCTTCGGCCCAGTAATATGAAATATGGA
Found at i:64277436 original size:35 final size:35
Alignment explanation
Indices: 64277397--64277463 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
64277387 CTTAGAAATT
* **
64277397 GTTTACAATGTGTTGCCTTGAAGGACCTATATACA
1 GTTTACAAGGTGTTGCCCCGAAGGACCTATATACA
* *
64277432 GTTTACACGGTGTTGCCCCGAATGACCTATAT
1 GTTTACAAGGTGTTGCCCCGAAGGACCTATAT
64277464 TCCATTTATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (35 bp):
GTTTACAAGGTGTTGCCCCGAAGGACCTATATACA
Found at i:64277990 original size:16 final size:16
Alignment explanation
Indices: 64277969--64278018 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
64277959 ATTGCATACA
64277969 TTGCATTTAGATTAAT
1 TTGCATTTAGATTAAT
* *
64277985 TTGCATTTAGGATCACT
1 TTGCATTTA-GATTAAT
64278002 TTGCATTTAG-TTAAT
1 TTGCATTTAGATTAAT
64278017 TT
1 TT
64278019 AATTTAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 5 0.17
16 10 0.34
17 14 0.48
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (16 bp):
TTGCATTTAGATTAAT
Found at i:64281324 original size:40 final size:39
Alignment explanation
Indices: 64281274--64281500 Score: 212
Period size: 40 Copynumber: 5.6 Consensus size: 39
64281264 GCTACTCGTT
* *
64281274 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGAC-TAGCCCGGATT-TAGTAACTCGCA
* *
64281314 CAAATGCCTTCGGGACTCATCCCGGATTTAGTAACTCTCA
1 CAAATGCCTTCGGGACT-AGCCCGGATTTAGTAACTCGCA
*
64281354 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-C-TAGCCCGGATTTAGTAACTCGCA
* *
64281394 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-C-TAGCCCGGATTTAGTAAC-TCGCA
* * *
64281435 CAATTGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCA
1 CAAATGCCTTCGGGA-C-TAGCCCGGATTTAGTAAC-TCGCA
*
64281476 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTCGGGAC-TAGCCCGGA
64281501 CATCATTCGA
Statistics
Matches: 170, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
39 4 0.02
40 113 0.66
41 53 0.31
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTAGCCCGGATTTAGTAACTCGCA
Found at i:64281448 original size:41 final size:41
Alignment explanation
Indices: 64281311--64281500 Score: 259
Period size: 40 Copynumber: 4.7 Consensus size: 41
64281301 ATAGTAGCTC
*
64281311 GCACAAATGCCTTCGGGA-CTCA-TCCCGGATTTAGTAACTCT-
1 GCACAAATGCCTTC-GGATCTTAGT-CCGGATTTAGTAACT-TA
*
64281352 -CACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TC
1 GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTA
64281391 GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTA
1 GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTA
*
64281432 GCACAATTGCCTTCGGATCTTAGTCCGGATTTAGTAACTTA
1 GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTA
*
64281473 GCACAAA-GCCTTCAGGA-CTTAGCCCGGA
1 GCACAAATGCCTTC-GGATCTTAGTCCGGA
64281501 CATCATTCGA
Statistics
Matches: 138, Mismatches: 5, Indels: 13
0.88 0.03 0.08
Matches are distributed among these distances:
38 1 0.01
39 3 0.02
40 83 0.60
41 51 0.37
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTTA
Found at i:64281467 original size:81 final size:80
Alignment explanation
Indices: 64281302--64281500 Score: 271
Period size: 81 Copynumber: 2.5 Consensus size: 80
64281292 AGCCCGGTTA
* * *
64281302 TAGTAGCTCGCACAAATGCCTTCGGGACTCA-TCCCGGATTTAGTAACTCTCACAAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCAGGACTTAGT-CCGGATTTAGTAACTCTCACAAATGCCTTCG
64281366 GATCTTAGTCCGGATT
65 GATCTTAGTCCGGATT
*
64281382 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACT-TAGCACAATTGCCTT
1 TAGTAACTCGCACAAATGCCTTCAGGA-CTTAGTCCGGATTTAGTAACTCT--CACAAATGCCTT
64281445 CGGATCTTAGTCCGGATT
63 CGGATCTTAGTCCGGATT
* *
64281463 TAGTAACTTAGCACAAA-GCCTTCAGGACTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTCAGGACTTAGTCCGGA
64281501 CATCATTCGA
Statistics
Matches: 108, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
79 4 0.04
80 40 0.37
81 53 0.49
82 11 0.10
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.29
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCAGGACTTAGTCCGGATTTAGTAACTCTCACAAATGCCTTCGG
ATCTTAGTCCGGATT
Found at i:64284843 original size:27 final size:25
Alignment explanation
Indices: 64284805--64284857 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
64284795 AACATAATAT
64284805 AATTATAAAATAATTAAATTTTACTTA
1 AATTATAAAAT-ATTAAATTTTA-TTA
* *
64284832 AATTATGAAATATTGAATTTTATTA
1 AATTATAAAATATTAAATTTTATTA
64284857 A
1 A
64284858 TTCTATAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 4 0.17
26 10 0.42
27 10 0.42
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (25 bp):
AATTATAAAATATTAAATTTTATTA
Found at i:64286395 original size:22 final size:22
Alignment explanation
Indices: 64286369--64286412 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
64286359 TACTTAGTTA
64286369 AATTTTAGTTCTTAATCACTTC
1 AATTTTAGTTCTTAATCACTTC
64286391 AATTTTAGTTCTTAATCACTTC
1 AATTTTAGTTCTTAATCACTTC
64286413 CTCAAAATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.05, T:0.50
Consensus pattern (22 bp):
AATTTTAGTTCTTAATCACTTC
Found at i:64288617 original size:109 final size:109
Alignment explanation
Indices: 64288482--64288800 Score: 528
Period size: 101 Copynumber: 3.0 Consensus size: 109
64288472 GGAATTAACG
64288482 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
64288547 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
64288591 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
64288656 -TTAATATATG-T--TA-A-TATA-TT-ATAAAAGATGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
* *
64288692 GCCGACCAATATGCATGGATTAATGACTTGAATTGTTTATTATATTTTATGGCATTATGGTATAC
1 GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
* * * *
64288757 TTTAATATATGTTAATATATTATGTTTAAGAAGAGAGGAAAGTA
66 TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
64288801 TTCATCTTTC
Statistics
Matches: 196, Mismatches: 6, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
101 79 0.40
102 12 0.06
103 5 0.03
104 1 0.01
105 4 0.02
106 1 0.01
107 4 0.02
108 12 0.06
109 78 0.40
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (109 bp):
GCCGACCAATATGCATGGATTAATGACTTGAATTATTTATTATGTTTTATGGCATTATGGTATAC
TTTAATATATGTTAATATATTATATTTAATAAAAGATGAAAGTA
Found at i:64288896 original size:47 final size:48
Alignment explanation
Indices: 64288839--64288933 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 48
64288829 ACTAAGAGAA
64288839 AGAAAAGAAAGTTTCAGCTTTGATATTTTCGAT-CTTGCATGTTCAAT
1 AGAAAAGAAAGTTTCAGCTTTGATATTTTCGATCCTTGCATGTTCAAT
64288886 AGAAAAGAAAGTTTCAGCTTTGATATTTTCGATCCTTGCATGTTCAAT
1 AGAAAAGAAAGTTTCAGCTTTGATATTTTCGATCCTTGCATGTTCAAT
64288934 TAGATCAAGA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 33 0.70
48 14 0.30
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.38
Consensus pattern (48 bp):
AGAAAAGAAAGTTTCAGCTTTGATATTTTCGATCCTTGCATGTTCAAT
Found at i:64289287 original size:28 final size:28
Alignment explanation
Indices: 64289218--64289287 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
64289208 TATGAGATTG
*
64289218 GCACTAAGTGTGCAAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
* *
64289246 GCACTAAGTGTGCGAGTTTGATTAT-TAA
1 GCACTAAGTGTGCGAGTTTAATTGTAT-A
64289274 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
64289288 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:64294115 original size:48 final size:48
Alignment explanation
Indices: 64294063--64294227 Score: 165
Period size: 48 Copynumber: 3.4 Consensus size: 48
64294053 ATGTGAGTAT
*
64294063 TGAGATC-CTATATAAGACCATATCTAGGATATGACATCGGCATCTG-TA
1 TGAGATCTC-ATATAAGACCATATCTAGGATATGGCATCGGCATC-GATA
* * *
64294111 TGAGATTTCATGTAAGACCATATCTAGGATATGGCATTGGCATCGATA
1 TGAGATCTCATATAAGACCATATCTAGGATATGGCATCGGCATCGATA
* * * * * * * *
64294159 TGAGGTCTCGTATAAGACCATGTCTGGGACATGGCATCGACACCGTTA
1 TGAGATCTCATATAAGACCATATCTAGGATATGGCATCGGCATCGATA
*
64294207 TGAGA-CTTCATGTAAGACCAT
1 TGAGATC-TCATATAAGACCAT
64294228 GTCTGGGACA
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
47 2 0.02
48 93 0.97
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (48 bp):
TGAGATCTCATATAAGACCATATCTAGGATATGGCATCGGCATCGATA
Found at i:64294305 original size:42 final size:42
Alignment explanation
Indices: 64294095--64294462 Score: 210
Period size: 42 Copynumber: 8.4 Consensus size: 42
64294085 TCTAGGATAT
* *
64294095 GACATCGGCATCTG-TATGAGATTTCATGTAAGACCATATCTAGG
1 GACAT-GGCAT-TGATATGAGATTTCGTGTAAGACCATGTCT-GG
* * * * *
64294139 ATATGGCATTGGCATCGATATGAGGTCTCGTATAAGACCATGTCTGG
1 ----GACA-TGGCATTGATATGAGATTTCGTGTAAGACCATGTCTGG
* * *
64294186 GACATGGCATCGACACCGTTATGAGACTTCATGTAAGACCATGTCTGG
1 GACATGGCATTG--A----TATGAGATTTCGTGTAAGACCATGTCTGG
* * * * * * *
64294234 GACATGACTTTGATATAATATTTCATGTAAGGCCATGTCTGT
1 GACATGGCATTGATATGAGATTTCGTGTAAGACCATGTCTGG
* * *
64294276 GACATGGCATTGATACGAGATTCCGTGTAAGACCATAG-CTAG
1 GACATGGCATTGATATGAGATTTCGTGTAAGACCAT-GTCTGG
* * *
64294318 G-CTATTGGCATTGGTATGATATTACGTGTAAGACCATGTCTGG
1 GAC-A-TGGCATTGATATGAGATTTCGTGTAAGACCATGTCTGG
* * *
64294361 GACATAGCATCGTTATGAGATTTCGTGTAAGACCATAG-CTGG
1 GACATGGCATTGATATGAGATTTCGTGTAAGACCAT-GTCTGG
* * * * *
64294403 G-CTATTGGC-TTCGATATGATAATACATGTAAGACCATATCTGG
1 GAC-A-TGGCATT-GATATGAGATTTCGTGTAAGACCATGTCTGG
*
64294446 GATATGGCATTG-TATGA
1 GACATGGCATTGATATGA
64294463 CATATGCATG
Statistics
Matches: 250, Mismatches: 50, Indels: 47
0.72 0.14 0.14
Matches are distributed among these distances:
41 7 0.03
42 104 0.42
43 69 0.28
44 2 0.01
46 1 0.00
47 3 0.01
48 63 0.25
49 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
GACATGGCATTGATATGAGATTTCGTGTAAGACCATGTCTGG
Found at i:64294346 original size:43 final size:42
Alignment explanation
Indices: 64294279--64294462 Score: 169
Period size: 43 Copynumber: 4.4 Consensus size: 42
64294269 TGTCTGTGAC
* * *
64294279 ATGGCATTGATACGAGATTCCGTGTAAGACCATAGCTAGGCT
1 ATGGCATTGATATGAGATTACGTGTAAGACCATAGCTGGGCT
* *
64294321 ATTGGCATTGGTATGATATTACGTGTAAGACCAT-GTCTGGGAC-
1 A-TGGCATTGATATGAGATTACGTGTAAGACCATAG-CTGGG-CT
* * * *
64294364 ATAGCATCGTTATGAGATTTCGTGTAAGACCATAGCTGGGCT
1 ATGGCATTGATATGAGATTACGTGTAAGACCATAGCTGGGCT
* * * * *
64294406 ATTGGC-TTCGATATGATAATACATGTAAGACCATATCTGGGAT
1 A-TGGCATT-GATATGAGATTACGTGTAAGACCATAGCTGGGCT
64294449 ATGGCATTG-TATGA
1 ATGGCATTGATATGA
64294463 CATATGCATG
Statistics
Matches: 115, Mismatches: 19, Indels: 17
0.76 0.13 0.11
Matches are distributed among these distances:
41 6 0.05
42 41 0.36
43 67 0.58
44 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (42 bp):
ATGGCATTGATATGAGATTACGTGTAAGACCATAGCTGGGCT
Found at i:64294365 original size:85 final size:85
Alignment explanation
Indices: 64294257--64294457 Score: 269
Period size: 85 Copynumber: 2.4 Consensus size: 85
64294247 TATAATATTT
* *
64294257 CATGTAAGGCCATGTCTGTGACATGGCATTGATACGAGATTCCGTGTAAGACCATAGCTAGGCTA
1 CATGTAAGACCATGTCTGGGACATGGCATTGATACGAGATTCCGTGTAAGACCATAGCTAGGCTA
* *
64294322 TTGGCATT-GGTATGATATTA
66 TTGGC-TTCGATATGATAATA
* * * * * * *
64294342 CGTGTAAGACCATGTCTGGGACATAGCATCGTTATGAGATTTCGTGTAAGACCATAGCTGGGCTA
1 CATGTAAGACCATGTCTGGGACATGGCATTGATACGAGATTCCGTGTAAGACCATAGCTAGGCTA
64294407 TTGGCTTCGATATGATAATA
66 TTGGCTTCGATATGATAATA
* *
64294427 CATGTAAGACCATATCTGGGATATGGCATTG
1 CATGTAAGACCATGTCTGGGACATGGCATTG
64294458 TATGACATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
84 2 0.02
85 97 0.98
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (85 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGATACGAGATTCCGTGTAAGACCATAGCTAGGCTA
TTGGCTTCGATATGATAATA
Found at i:64297968 original size:27 final size:27
Alignment explanation
Indices: 64297541--64298085 Score: 668
Period size: 27 Copynumber: 20.2 Consensus size: 27
64297531 AAAGTACTCC
64297541 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
64297568 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
64297595 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
64297622 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
64297649 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
64297676 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
64297703 -TAGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
64297730 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
64297757 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
64297784 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
64297811 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
64297838 CGATTTACAGCATTACCACTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
64297865 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
64297892 CGATTTACAGAATTACTATTTTACGCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
64297919 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
64297946 CGATTTACAGAATTACCGCTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
64297973 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
64298000 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
64298027 -TAGTTTACAAAATTATCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* **
64298054 TGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
64298081 TGATT
1 CGATT
64298086 GTGAAATTAC
Statistics
Matches: 455, Mismatches: 53, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
26 5 0.01
27 445 0.98
28 5 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:64298127 original size:27 final size:26
Alignment explanation
Indices: 64298090--64298203 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 26
64298080 TTGATTGTGA
64298090 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTAC-GAAATACCCTTGTAGGGTAG
64298117 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTA-CGAAATACCCTTGTAGGGTAG
* *
64298144 AAATACCAAAATACCCCTT-TAGGGTAG
1 AATTA-CGAAATA-CCCTTGTAGGGTAG
* * *
64298171 AATTACCAAGATACCCTTGTGGGGTAA
1 AATTACGAA-ATACCCTTGTAGGGTAG
64298198 AATTAC
1 AATTAC
64298204 CATTTTGCCC
Statistics
Matches: 76, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
26 8 0.11
27 62 0.82
28 6 0.08
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (26 bp):
AATTACGAAATACCCTTGTAGGGTAG
Found at i:64298215 original size:54 final size:55
Alignment explanation
Indices: 64298098--64298205 Score: 152
Period size: 54 Copynumber: 2.0 Consensus size: 55
64298088 GAAATTACTG
*
64298098 AAATA-CCCTTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCA
1 AAATACCCCTTGTAGGGTAGAATTATCCAAATACCCTTGTAGGGTAGAAATACCA
*
64298152 AAATACCCCTT-TAGGGTAGAATTA-CCAAGATACCCTTGTGGGGTA-AAATTACCA
1 AAATACCCCTTGTAGGGTAGAATTATCCAA-ATACCCTTGTAGGGTAGAAA-TACCA
64298206 TTTTGCCCCT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
53 6 0.12
54 38 0.78
55 5 0.10
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (55 bp):
AAATACCCCTTGTAGGGTAGAATTATCCAAATACCCTTGTAGGGTAGAAATACCA
Found at i:64298367 original size:16 final size:16
Alignment explanation
Indices: 64298346--64298376 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64298336 CAAATATGGG
*
64298346 CATGACATTTTGCATA
1 CATGACATGTTGCATA
64298362 CATGACATGTTGCAT
1 CATGACATGTTGCAT
64298377 GGGTTGGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:64309350 original size:22 final size:22
Alignment explanation
Indices: 64309316--64309374 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
64309306 CCCGTTATTA
* *
64309316 ATGGCTCTATGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
64309338 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
64309360 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
64309375 ACGTATTTAC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:64309738 original size:6 final size:6
Alignment explanation
Indices: 64309729--64309951 Score: 201
Period size: 6 Copynumber: 36.8 Consensus size: 6
64309719 TTGCATTCAC
* * *
64309729 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTA ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
64309778 -TTACTA ATACTG ATTCTG ATTATG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
64309826 ATTATG ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG
1 ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
*
64309875 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG
*
64309923 ATTCTG -TTACTA ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
64309952 CATTTTGGTT
Statistics
Matches: 179, Mismatches: 20, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
5 13 0.07
6 151 0.84
7 12 0.07
8 3 0.02
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:64309972 original size:30 final size:30
Alignment explanation
Indices: 64309729--64309951 Score: 290
Period size: 30 Copynumber: 7.4 Consensus size: 30
64309719 TTGCATTCAC
* *
64309729 ATTCTGATTCTGATTCTGTCACGTAATTCTA
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
64309760 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
64309790 ATTCTGATTATGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
64309820 ATTCTGATTATGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* * *
64309850 ATTCTGATTCTG-TCACCTAATT-CTGATTCTG
1 ATTCTGATTCTGAT--TCT-GTTACTAATTCTG
64309881 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
64309911 ATTCTGATTCTGATTCTGTTACTAATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
64309941 ATTCTGATTCT
1 ATTCTGATTCT
64309952 CATTTTGGTT
Statistics
Matches: 173, Mismatches: 12, Indels: 15
0.87 0.06 0.08
Matches are distributed among these distances:
29 4 0.02
30 121 0.70
31 45 0.26
32 3 0.02
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:64313929 original size:47 final size:49
Alignment explanation
Indices: 64313708--64313932 Score: 161
Period size: 47 Copynumber: 4.8 Consensus size: 49
64313698 TATGGGTTAT
* * ** *
64313708 TATGAGCCAGTGTAAGACCATGTCTAGGAAATGGCATTAG-CATT-AAGA
1 TATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGAC-TTGACGA
* *
64313756 CT-CGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCA-CTGG-C-T-ACGA
1 -TATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGACTTGACGA
* * * * * * *
64313800 GATGTGTCAGTGTAAGACCATGTCTGTGACATGGCGTCGGCCTTGATGA
1 TATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGACGA
* *
64313849 TGAT-AGTCAGCGTAAGACCATGTCTAGGG-CATGGCATC-GACTTGA-GA
1 T-ATGAGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGGACTTGACGA
*
64313896 TATGAGCCAGTGTAAGAACATGTCTGGGACATGGCAT
1 TATGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
64313933 TGACATTCTA
Statistics
Matches: 140, Mismatches: 24, Indels: 26
0.74 0.13 0.14
Matches are distributed among these distances:
44 15 0.11
45 13 0.09
46 14 0.10
47 43 0.31
48 20 0.14
49 31 0.22
50 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (49 bp):
TATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGACGA
Found at i:64316092 original size:44 final size:45
Alignment explanation
Indices: 64316041--64316129 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 45
64316031 TACAACATCT
64316041 ATTCCATTCAACCAAACACAA-GAATT-CT-ATTACAGCTCTATTCA
1 ATTCCATTCAACCAAA-A-AATGAATTACTGATTACAGCTCTATTCA
64316085 ATTCCATTCAACCAAAAAATTGAATTACTGATTACAGCTCTATTC
1 ATTCCATTCAACCAAAAAA-TGAATTACTGATTACAGCTCTATTC
64316130 CATTACAACT
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
42 2 0.05
43 1 0.02
44 21 0.51
45 2 0.05
46 15 0.37
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.31
Consensus pattern (45 bp):
ATTCCATTCAACCAAAAAATGAATTACTGATTACAGCTCTATTCA
Found at i:64316136 original size:16 final size:16
Alignment explanation
Indices: 64316115--64316184 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
64316105 TGAATTACTG
*
64316115 ATTACAGCTCTATTCC
1 ATTACAACTCTATTCC
* *
64316131 ATTACAACTCGACTCC
1 ATTACAACTCTATTCC
*
64316147 ATTACAACTCTATTCA
1 ATTACAACTCTATTCC
*
64316163 ATTACAACCCTATTCC
1 ATTACAACTCTATTCC
64316179 ATTACA
1 ATTACA
64316185 GTGAACCAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.33, C:0.31, G:0.03, T:0.33
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:64333700 original size:29 final size:29
Alignment explanation
Indices: 64333639--64333737 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
64333629 ACAGTAAGTC
64333639 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
64333667 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
64333696 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
64333724 CGCACACTTAGTGC
1 CGCACACTTAGTGC
64333738 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:64342805 original size:64 final size:65
Alignment explanation
Indices: 64342724--64342907 Score: 191
Period size: 67 Copynumber: 2.8 Consensus size: 65
64342714 AGACATTATG
* *
64342724 ATGTAGCTAGGTCGCATGGGTGATACTA-TGTATACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTAGTGTATACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
64342788 ATGTAGCTAGGTCGCATGCGTGGCT-CCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-GTGTA-TACACCATGTAGACAAGAGAGCTACGAGA
64342852 TAA
63 TAA
* * *
64342855 AT-TGGCTAGGTCACATGGGTGGTACTGAGTGT-T-CACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-AGTGTATACACCATGTAG-ACAAGAGAGC
64342908 CGAACTCTAT
Statistics
Matches: 99, Mismatches: 14, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 22 0.22
65 4 0.04
66 22 0.22
67 32 0.32
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (65 bp):
ATGTAGCTAGGTCGCATGGGTGATACTAGTGTATACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:64352528 original size:29 final size:29
Alignment explanation
Indices: 64352495--64352577 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
64352485 GTGACGAGAT
*
64352495 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64352524 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
64352553 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
64352578 AAAATACGGC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:64352598 original size:31 final size:29
Alignment explanation
Indices: 64352496--64352590 Score: 127
Period size: 29 Copynumber: 3.2 Consensus size: 29
64352486 TGACGAGATT
* * *
64352496 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
* *
64352525 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAC
64352554 GGCACTAAGTGTGCATGCTGGAAAAAAATAC
1 GGCACTAAGTGTGCATGCTGG--AAAAATAC
64352585 GGCACT
1 GGCACT
64352591 GGGTGTGCGA
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
29 49 0.80
31 12 0.20
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAC
Found at i:64352618 original size:60 final size:58
Alignment explanation
Indices: 64352491--64352627 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 58
64352481 TACGGTGACG
* * * *
64352491 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
64352548 ATATATGGCACTAAGTGTGCATGCTGGAAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG--AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
64352608 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
64352628 GGGCTTAAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
57 3 0.05
58 21 0.32
60 40 0.62
61 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:64363458 original size:48 final size:48
Alignment explanation
Indices: 64363397--64364827 Score: 1913
Period size: 48 Copynumber: 29.6 Consensus size: 48
64363387 TGTGTTGCCA
* *
64363397 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
64363445 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
64363493 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* * * *
64363541 AATGGCTAGTGTAAAATATGTACGAGATATGCCGA-ATG-GCT--AG-TG
1 AATGGCTAGTGTGAAATATGTACGAGATATG--TATATGTGGTAAAGCCG
* * * * * * *
64363586 --T-G-AAATATG---TACG-A-GATATGTAT--ATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
64363623 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGT--A----AA--GCCG
* * * *
64363679 AATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCTG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* * *
64363727 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* *
64363775 AATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* * * *
64363823 AATGGCTAATGTGAAATATATATGAGATATGTATATGTAGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* * * *
64363871 AATGGCTAGTATGAAATATATATGAGATATATATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* * *
64363919 AATGGCTAATGTGAAATATGTATGAGATATGTATTTGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* *
64363967 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* *
64364015 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* * *
64364063 AATGGTTGGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* *
64364111 AATAGCTGGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* *
64364159 AATGGCTGGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* *
64364207 AATGGCTGGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
64364255 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
64364303 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
*
64364351 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGTCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
*
64364399 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCAG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* *
64364447 AATGGGTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
*
64364495 AATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* ** * * **
64364543 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCCG
1 -A-ATG-GCTAGTG-TGAA---ATA-TGT---A-CG-----AGATATGTATATGTGGTAAAGCCG
* *
64364608 AATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
64364656 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
*
64364704 AATGGCTAATGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* * *
64364752 AATGGCTAGTGTGAAATATGAATGAGATATGTATGTGTGGTAAAGCCG
1 AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
* *
64364800 AATGGCTGGTGTGAAATATGTAGGAGAT
1 AATGGCTAGTGTGAAATATGTACGAGAT
64364828 GTGTGTATAT
Statistics
Matches: 1252, Mismatches: 89, Indels: 84
0.88 0.06 0.06
Matches are distributed among these distances:
33 3 0.00
34 2 0.00
36 7 0.01
37 2 0.00
38 3 0.00
39 1 0.00
40 1 0.00
41 7 0.01
42 1 0.00
43 1 0.00
44 3 0.00
45 2 0.00
46 8 0.01
48 1103 0.88
49 4 0.00
50 7 0.01
51 4 0.00
52 3 0.00
54 4 0.00
55 2 0.00
56 44 0.04
57 2 0.00
58 2 0.00
59 1 0.00
61 3 0.00
62 4 0.00
63 3 0.00
64 1 0.00
65 24 0.02
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
AATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCG
Found at i:64363577 original size:34 final size:34
Alignment explanation
Indices: 64363537--64363605 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
64363527 ATGTGGTAAA
64363537 GCCGAATGGCTAGTGTAAAATATGTACGAGATAT
1 GCCGAATGGCTAGTGTAAAATATGTACGAGATAT
*
64363571 GCCGAATGGCTAGTGTGAAATATGTACGAGATAT
1 GCCGAATGGCTAGTGTAAAATATGTACGAGATAT
64363605 G
1 G
64363606 TATATGTGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (34 bp):
GCCGAATGGCTAGTGTAAAATATGTACGAGATAT
Found at i:64363584 original size:82 final size:82
Alignment explanation
Indices: 64363489--64363653 Score: 321
Period size: 82 Copynumber: 2.0 Consensus size: 82
64363479 ATGTGGTAAA
64363489 GCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTA
1 GCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTA
64363554 AAATATGTACGAGATAT
66 AAATATGTACGAGATAT
*
64363571 GCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 GCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTA
64363636 AAATATGTACGAGATAT
66 AAATATGTACGAGATAT
64363653 G
1 G
64363654 TATATGTGGT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 82 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (82 bp):
GCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTA
AAATATGTACGAGATAT
Found at i:64364545 original size:17 final size:17
Alignment explanation
Indices: 64364525--64364559 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
64364515 TACGAGATAT
64364525 GTATATGTGGTAAAGCC
1 GTATATGTGGTAAAGCC
64364542 GTATATGTGGTAAAGCC
1 GTATATGTGGTAAAGCC
64364559 G
1 G
64364560 AATGGCTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (17 bp):
GTATATGTGGTAAAGCC
Found at i:64364563 original size:113 final size:113
Alignment explanation
Indices: 64364429--64364655 Score: 427
Period size: 113 Copynumber: 2.0 Consensus size: 113
64364419 TACGAGATAT
*
64364429 GTATATGTGGTAAAGCAGAATGGGTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
1 GTATATGTGGTAAAGCAGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
64364494 GAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
66 GAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
*
64364542 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
1 GTATATGTGGTAAAGCAGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
*
64364607 GAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
66 GAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
64364655 G
1 G
64364656 AATGGCTAGT
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 111 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (113 bp):
GTATATGTGGTAAAGCAGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
GAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
Found at i:64364579 original size:65 final size:65
Alignment explanation
Indices: 64364477--64364607 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
64364467 TACGAGATAT
64364477 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
1 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
64364542 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
1 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
64364607 G
1 G
64364608 AATGGCTAGT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (65 bp):
GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
Found at i:64364693 original size:209 final size:209
Alignment explanation
Indices: 64364333--64364751 Score: 757
Period size: 209 Copynumber: 2.0 Consensus size: 209
64364323 TACGAGATAT
* *
64364333 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGTC
1 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
* *
64364398 GAATGGCTAGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCAGAATGGGTAGTGTGAAA
66 GAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCAGAATGGCTAGTGTGAAA
*
64364463 TATATACGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTA
131 TATATACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATACGAGATATGTA
64364528 TATGTGGTAAAGCC
196 TATGTGGTAAAGCC
64364542 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
1 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
* *
64364607 GAATGGCTAGTGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAA
66 GAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCAGAATGGCTAGTGTGAAA
* *
64364672 TATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTACGAGATATGTA
131 TATATACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATACGAGATATGTA
64364737 TATGTGGTAAAGCC
196 TATGTGGTAAAGCC
64364751 G
1 G
64364752 AATGGCTAGT
Statistics
Matches: 201, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
209 201 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (209 bp):
GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCC
GAATGGCTAGTGTGAAATATATACGAGATATGTATATGTGGTAAAGCAGAATGGCTAGTGTGAAA
TATATACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATACGAGATATGTA
TATGTGGTAAAGCC
Found at i:64365021 original size:37 final size:37
Alignment explanation
Indices: 64364968--64365107 Score: 226
Period size: 37 Copynumber: 3.8 Consensus size: 37
64364958 GGAAATATAT
64364968 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
64365005 TCTGGGTAAGACCCGATGACTACGTGTGGAGACTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
64365042 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
64365079 TCCGGGTAAGACCCGATAACTACATGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
64365108 CGACTATTCG
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 93 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:64365094 original size:74 final size:74
Alignment explanation
Indices: 64364968--64365114 Score: 249
Period size: 74 Copynumber: 2.0 Consensus size: 74
64364958 GGAAATATAT
* * * *
64364968 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCTGGGTAAGACCCGATGACTACGTGTG
1 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTACATGTG
64365033 GAGACTATG
66 GAGACTATG
64365042 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTACATGTG
1 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTACATGTG
*
64365107 GCGACTAT
66 GAGACTAT
64365115 TCGAGCTAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (74 bp):
TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTACATGTG
GAGACTATG
Found at i:64383654 original size:11 final size:12
Alignment explanation
Indices: 64383629--64383660 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
64383619 AAACCATTCC
*
64383629 TTTCCCTTTCTT
1 TTTCCTTTTCTT
64383641 TTTCCTTTTCTT
1 TTTCCTTTTCTT
64383653 TTTCCTTT
1 TTTCCTTT
64383661 ACATAGATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTCCTTTTCTT
Found at i:64389014 original size:40 final size:40
Alignment explanation
Indices: 64388921--64389137 Score: 287
Period size: 40 Copynumber: 5.5 Consensus size: 40
64388911 AAGCCAAGTA
* * *
64388921 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
64388959 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
64388999 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
64389039 CCCTCGGGACTTAGCTCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
64389079 CCTTCGGGACTTAGCCCGGATGTAATAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64389119 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64389138 TTATCATCCG
Statistics
Matches: 161, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
38 12 0.07
39 17 0.11
40 132 0.82
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64391458 original size:28 final size:27
Alignment explanation
Indices: 64391395--64391464 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
64391385 ATAGTGAGTC
64391395 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
64391422 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
64391450 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64391465 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:64396772 original size:53 final size:54
Alignment explanation
Indices: 64396692--64396898 Score: 193
Period size: 53 Copynumber: 3.8 Consensus size: 54
64396682 TTCCTTTTTA
*
64396692 AACTTACC-ATTTCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGT-CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * *
64396745 AACTCACCATTGTCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGTCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
64396799 TAGTTTATCAATGTCATGTCTTGACATGCTCTTACATGATTTACTTGCCTTGTAA
1 -AACTTACCAATGTCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
64396854 AACTTACCAATGCCATGTCTTGGCATGGTCTTACTTGGTACCCTT
1 AACTTACCAATGTCATGTCTTGACATGGTCTTACATGGTATCCTT
64396899 AAACCCTAAT
Statistics
Matches: 117, Mismatches: 34, Indels: 5
0.75 0.22 0.03
Matches are distributed among these distances:
53 42 0.36
54 37 0.32
55 38 0.32
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGTCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:64399356 original size:43 final size:44
Alignment explanation
Indices: 64399283--64399368 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 44
64399273 TAGGTCAAAT
64399283 AATATTAAAATAACTTACACTAATCAGAGTTTAAGTAGGAAACC
1 AATATTAAAATAACTTACACTAATCAGAGTTTAAGTAGGAAACC
* *
64399327 AATATTAAAATAAC-TACACTAATTAGAGTTTAAGTGGGAAAC
1 AATATTAAAATAACTTACACTAATCAGAGTTTAAGTAGGAAAC
64399369 TAAAAATAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 26 0.65
44 14 0.35
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.28
Consensus pattern (44 bp):
AATATTAAAATAACTTACACTAATCAGAGTTTAAGTAGGAAACC
Found at i:64399398 original size:25 final size:25
Alignment explanation
Indices: 64399350--64399399 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
64399340 CTACACTAAT
* *
64399350 TAGAGTTTAAGTGGGAAACTAAAAA
1 TAGAGTTTAACTGGGAAACGAAAAA
64399375 TAGAGTTTAACTGGGAGAA-GAAAAA
1 TAGAGTTTAACTGGGA-AACGAAAAA
64399400 CCAAAAACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (25 bp):
TAGAGTTTAACTGGGAAACGAAAAA
Found at i:64405960 original size:138 final size:138
Alignment explanation
Indices: 64405716--64405979 Score: 447
Period size: 138 Copynumber: 1.9 Consensus size: 138
64405706 TTATATTTGG
* * *
64405716 AAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATATAACTGTTTATGTT
1 AAAGAATATTAATTTCCATGGCTTTTATATTTTGACAGAAATTAATTAAGATAACTGTTTATGTT
* * *
64405781 AATAAATTTAGTAAAATATATACAATTAATATTTTGTATGAATTAAATTCATATATTAATTATAT
66 AATAAATTCAGTAAAATATATACAATTAATATTTTGAATGAATCAAATTCATATATTAATTATAT
64405846 TCTTTCCA
131 TCTTTCCA
* *
64405854 AAAGAATATTAATTTCCATGGCTTTTATATTTTGACAGAAATTAATTAAGATAATTGTTTATTTT
1 AAAGAATATTAATTTCCATGGCTTTTATATTTTGACAGAAATTAATTAAGATAACTGTTTATGTT
*
64405919 AATAAATTCGGTAAAATATATACAATTAATATTTTGAATGAATCAAATTCATATATTAATT
66 AATAAATTCAGTAAAATATATACAATTAATATTTTGAATGAATCAAATTCATATATTAATT
64405980 TTATCTATGT
Statistics
Matches: 117, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
138 117 1.00
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.44
Consensus pattern (138 bp):
AAAGAATATTAATTTCCATGGCTTTTATATTTTGACAGAAATTAATTAAGATAACTGTTTATGTT
AATAAATTCAGTAAAATATATACAATTAATATTTTGAATGAATCAAATTCATATATTAATTATAT
TCTTTCCA
Found at i:64424561 original size:46 final size:45
Alignment explanation
Indices: 64424511--64424686 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
64424501 TGGTTGAGCA
64424511 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
64424557 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAAAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
64424604 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
64424650 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64424687 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:64424706 original size:93 final size:93
Alignment explanation
Indices: 64424508--64424679 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
64424498 GGATGGTTGA
* * * *
64424508 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64424573 TGAGTCCGAGTTCGAAAGATGTAACTAG
66 TGAGTCCGAGTTCGAAAGATGTAACTAG
*
64424601 GCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64424666 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
64424680 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAAAGATGTAACTAG
Found at i:64442073 original size:33 final size:33
Alignment explanation
Indices: 64442027--64442137 Score: 168
Period size: 33 Copynumber: 3.4 Consensus size: 33
64442017 TACTCTCTTT
* *
64442027 TTGGTGTGCTGGTTGGATTAGCTTTTATGAGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
* * *
64442060 TAGGTGTGATGGTTGGTTTAGCTCTTATGAACA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
*
64442093 TTGGTGTGATGGTTGGATTAGCTCTTATGCGCA
1 TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
64442126 TTGGTGTGATGG
1 TTGGTGTGATGG
64442138 ATGTATTGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 69 1.00
ACGTcount: A:0.16, C:0.09, G:0.34, T:0.41
Consensus pattern (33 bp):
TTGGTGTGATGGTTGGATTAGCTCTTATGAGCA
Found at i:64443846 original size:25 final size:27
Alignment explanation
Indices: 64443809--64443861 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
64443799 TCAAACATGC
64443809 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
64443835 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
64443861 A
1 A
64443862 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:64445383 original size:26 final size:26
Alignment explanation
Indices: 64445350--64445453 Score: 181
Period size: 26 Copynumber: 4.0 Consensus size: 26
64445340 ATTCTCATCT
*
64445350 TGGAACATTTACCTAAACCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
64445376 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
* *
64445402 TGGAATATTTACCTAATCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
64445428 TGGAACATTTACCTAACCCATTATCA
1 TGGAACATTTACCTAACCCATTATCA
64445454 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
TGGAACATTTACCTAACCCATTATCA
Found at i:64446164 original size:12 final size:12
Alignment explanation
Indices: 64446147--64446176 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
64446137 TCAGGCTGTT
64446147 ACACGGCCTAGC
1 ACACGGCCTAGC
*
64446159 ACACGGCCTGGC
1 ACACGGCCTAGC
64446171 ACACGG
1 ACACGG
64446177 GCGTGTGAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:64447628 original size:43 final size:43
Alignment explanation
Indices: 64447525--64447629 Score: 129
Period size: 44 Copynumber: 2.4 Consensus size: 43
64447515 TTTGAGTTGC
* *
64447525 TTCCACGTAACTTTCTTTTTTGTCATTTCTTGGTAGTGATTTT
1 TTCCACGTAACTTCCTCTTTTGTCATTTCTTGGTAGTGATTTT
* ** *
64447568 TTCCTACATATTTTCCTCTTTTGTCGTTTCTTGGTAGTGATTTT
1 TTCC-ACGTAACTTCCTCTTTTGTCATTTCTTGGTAGTGATTTT
* *
64447612 TTTCACGTAGCTTCCTCT
1 TTCCACGTAACTTCCTCT
64447630 ATTTTTTATG
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 15 0.29
44 36 0.71
ACGTcount: A:0.12, C:0.20, G:0.13, T:0.54
Consensus pattern (43 bp):
TTCCACGTAACTTCCTCTTTTGTCATTTCTTGGTAGTGATTTT
Found at i:64449034 original size:12 final size:12
Alignment explanation
Indices: 64449017--64449041 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64449007 ATGTAAGTGA
64449017 TCTTGATGATTT
1 TCTTGATGATTT
64449029 TCTTGATGATTT
1 TCTTGATGATTT
64449041 T
1 T
64449042 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:64449594 original size:21 final size:20
Alignment explanation
Indices: 64449566--64449607 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
64449556 GTTGCATATA
64449566 AATAATATAACTACATTGTC
1 AATAATATAACTACATTGTC
* *
64449586 AATACATATAATTGCATTGTC
1 AATA-ATATAACTACATTGTC
64449607 A
1 A
64449608 TTGAATTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (20 bp):
AATAATATAACTACATTGTC
Found at i:64449830 original size:46 final size:46
Alignment explanation
Indices: 64449743--64450097 Score: 129
Period size: 50 Copynumber: 7.4 Consensus size: 46
64449733 AATTTGTGTA
* * * *
64449743 CCAGTGTAAGACCATGT-TTGGACATGGCATCGGTATTGAGACG-AGTG
1 CCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCATCGAGACGTA-AG
* * *
64449790 CTAGTGTAAGACATGTCCAGGACATGCATCGGCCTCGAGACGTAAG
1 CCAGTGTAAGACATGTCTAGGACATGCATCGGCATCGAGACGTAAG
* * * * *
64449836 CCAGTGTAAGATATGTCTGGGACATGAATCGACTAT-GAGAC--ATG
1 CCAGTGTAAGACATGTCTAGGACATGCATCGGC-ATCGAGACGTAAG
* * * * * * *
64449880 TCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGATATGCAAGAG
1 CCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCATCGAGACG-TA-AG
* * * *
64449930 CTAGTGTAAGACCATGTTTGGGACATGACATCAGCAT-GTAAGTACG-AGAG
1 CCAGTGTAAGA-CATGTCTAGGACATG-CATCGGCATCG--AG-ACGTA-AG
* * *
64449980 CTAGTGTAAGACCATGTCTGGGACATGACATCAGCAT-GTAAGTACG-AGAG
1 CCAGTGTAAGA-CATGTCTAGGACATG-CATCGGCATCG--AG-ACGTA-AG
* * *
64450030 CTAGTGTAAGACCATGTCT-GGAACATGGCATCGGCCTCGATGA-GGATAG
1 CCAGTGTAAGA-CATGTCTAGG-ACAT-GCATCGGCATCGA-GACGTA-AG
*
64450079 CTAGTGTAAGACCATGTCT
1 CCAGTGTAAGA-CATGTCT
64450098 GGGATATGGC
Statistics
Matches: 257, Mismatches: 32, Indels: 36
0.79 0.10 0.11
Matches are distributed among these distances:
44 12 0.05
45 15 0.06
46 62 0.24
47 18 0.07
48 1 0.00
49 29 0.11
50 115 0.45
51 3 0.01
52 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
CCAGTGTAAGACATGTCTAGGACATGCATCGGCATCGAGACGTAAG
Found at i:64449945 original size:50 final size:50
Alignment explanation
Indices: 64449882--64450114 Score: 287
Period size: 50 Copynumber: 4.7 Consensus size: 50
64449872 GAGACATGTC
* *
64449882 AGTGTAAGACCATGTCTGGGACATGGCATC-GACATAG-ATA-TGCAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CAT-GTA-AGTACGAGAGCT
* *
64449932 AGTGTAAGACCATGTTTGGGACATGACATCAGCATGTAAGTACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATGTAAGTACGAGAGCT
*
64449982 AGTGTAAGACCATGTCTGGGACATGACATCAGCATGTAAGTACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATGTAAGTACGAGAGCT
* * * * * *
64450032 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCG-ATG-AGGATAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCAT-GTAAGTACGAGAGCT
*
64450081 AGTGTAAGACCATGTCTGGGATATGGCATCAGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCA
64450115 ACTTAACCAT
Statistics
Matches: 163, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
49 39 0.24
50 122 0.75
51 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCATGTAAGTACGAGAGCT
Found at i:64451392 original size:18 final size:18
Alignment explanation
Indices: 64451369--64451404 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
64451359 AGCTTGGTAG
*
64451369 CACCTCAAGCCCTGTCCT
1 CACCTCAAGCCCTATCCT
64451387 CACCTCAAGCCCTATCCT
1 CACCTCAAGCCCTATCCT
64451405 GGCATTGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.50, G:0.08, T:0.22
Consensus pattern (18 bp):
CACCTCAAGCCCTATCCT
Found at i:64457587 original size:50 final size:51
Alignment explanation
Indices: 64457523--64457750 Score: 258
Period size: 50 Copynumber: 4.6 Consensus size: 51
64457513 GACATGTCAA
64457523 TGTAAGACCATGTCTGGGACATGGCATCGA-CATGGATATGCAAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAGCATGGATATGCAAGAGCTAG
* * * *
64457573 TGTAAGACCATGTCTGGGACATGTCATC-AGCATGTA-AGTACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAGCATGGATA-TGCAAGAGCTAG
* *
64457623 TGTAAGACCATGTTTGGGACATGGCATC-AGCAT-G-TAAGCACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAGCATGGATATGCA--AGAGCTAG
* * * * *
64457673 TGTAAGACCATGTCTGGGACATGGCATCG-GCCTCGATGA-G-GATAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGAGCATGGAT-ATGCAAGAGCTAG
64457722 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACATGGCATCG
64457751 GCAACTTAAC
Statistics
Matches: 154, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
48 1 0.01
49 38 0.25
50 111 0.72
51 1 0.01
52 2 0.01
53 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (51 bp):
TGTAAGACCATGTCTGGGACATGGCATCGAGCATGGATATGCAAGAGCTAG
Found at i:64457641 original size:100 final size:99
Alignment explanation
Indices: 64457426--64457750 Score: 343
Period size: 100 Copynumber: 3.3 Consensus size: 99
64457416 TAATTTGTGT
* * * *
64457426 GCCAGTGTATGACCATGTCTGGGACATGGCATCGA-CAT-TGAG-ACGAGTGCCAGTGTAAGA-C
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAGCATGTAAGCAC-AGAGCTAGTGTAAGACC
* *
64457487 ATGTCTGGGACAT-GCATCGGC-TACG-AGAC-A-T
65 ATGTCTGGGACATGGCATCAGCAT-CGAAGACGAGA
* * *
64457518 GTCAATGTAAGACCATGTCTGGGACATGGCATCGA-CATGGATATGCA-AGAGCTAGTGTAAGAC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAGCAT-G-TAAGCACAGAGCTAGTGTAAGAC
*
64457581 CATGTCTGGGACATGTCATCAGCAT-GTAAGTACGAGA
64 CATGTCTGGGACATGGCATCAGCATCG-AAG-ACGAGA
* *
64457618 GCTAGTGTAAGACCATGTTTGGGACATGGCATC-AGCATGTAAGCACGAGAGCTAGTGTAAGACC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAGCATGTAAGCAC-AGAGCTAGTGTAAGACC
* * * * *
64457682 ATGTCTGGGACATGGCATCGGCCTCGATGAGGATA
65 ATGTCTGGGACATGGCATCAGCATCGAAGACGAGA
64457717 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
64457751 GCAACTTAAC
Statistics
Matches: 193, Mismatches: 23, Indels: 26
0.80 0.10 0.11
Matches are distributed among these distances:
92 35 0.18
94 13 0.07
95 17 0.09
96 7 0.04
97 3 0.02
98 7 0.04
99 38 0.20
100 72 0.37
101 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (99 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGAGCATGTAAGCACAGAGCTAGTGTAAGACCA
TGTCTGGGACATGGCATCAGCATCGAAGACGAGA
Found at i:64459886 original size:76 final size:74
Alignment explanation
Indices: 64459764--64460147 Score: 340
Period size: 76 Copynumber: 5.1 Consensus size: 74
64459754 GTAACAAAGT
* * * * * *
64459764 TTTGCGCCCAGCACTAGTCGGATAAATTGACGATATCAAATG-TGTGCCCATTGCTAGCCGGATA
1 TTTGCGCCCAGCGCTAGTCGGATAACTCGACGATATTAAA-GATGTGCCCA--GCTAGTCAGATA
*
64459828 AACCGACAACAA
63 AACCGACAACGA
* * *
64459840 TTTGCGCCCAGCGCTAGTCGGATAACTCGATGGTATTAAAGATGTGCCCAACAGTAGTCAGATAA
1 TTTGCGCCCAGCGCTAGTCGGATAACTCGACGATATTAAAGATGTGCCCAGC--TAGTCAGATAA
*
64459905 ACTGACAACGA
64 ACCGACAACGA
* * * *
64459916 TTTACGCCCAACGCTAGTCGGATAACCCAACGATATTAAAGATGTGCCCAGCACTAGTCAGATAA
1 TTTGCGCCCAGCGCTAGTCGGATAACTCGACGATATTAAAGATGTGCCCAG--CTAGTCAGATAA
*
64459981 ACCGACAATGA
64 ACCGACAACGA
* * * * ** * **
64459992 TTTACGCCCAGTGTTAGTCGGATAAAC-CAACTTTATTAAAAATGTGCCCAGCAATAGTTGGATA
1 TTTGCGCCCAGCGCTAGTCGGAT-AACTCGACGATATTAAAGATGTGCCCAGC--TAGTCAGATA
*
64460056 AACCGACAATGA
63 AACCGACAACGA
* * * * *
64460068 TTTGTGCCCAGCGCTAGTCGGATAAATTGACGATATTAAAAATGTGCCCAGCACTAGTCGGATAA
1 TTTGCGCCCAGCGCTAGTCGGATAACTCGACGATATTAAAGATGTGCCCAG--CTAGTCAGATAA
** *
64460133 AATGACAATGA
64 ACCGACAACGA
64460144 TTTG
1 TTTG
64460148 ATAGAAAATT
Statistics
Matches: 257, Mismatches: 40, Indels: 22
0.81 0.13 0.07
Matches are distributed among these distances:
74 2 0.01
75 3 0.01
76 247 0.96
77 3 0.01
78 2 0.01
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (74 bp):
TTTGCGCCCAGCGCTAGTCGGATAACTCGACGATATTAAAGATGTGCCCAGCTAGTCAGATAAAC
CGACAACGA
Found at i:64459973 original size:40 final size:40
Alignment explanation
Indices: 64459929--64460133 Score: 151
Period size: 40 Copynumber: 5.3 Consensus size: 40
64459919 ACGCCCAACG
* * *
64459929 CTAGTCGGATAACCCAACGATATTAAAGATGTGCCCAGCA
1 CTAGTCGGATAAACCGACGATATTAAAAATGTGCCCAGCA
* * ** **
64459969 CTAGTCAGATAAACCGACAATGATT-----TACGCCCAGTG
1 CTAGTCGGATAAACCGACGAT-ATTAAAAATGTGCCCAGCA
* * **
64460005 TTAGTCGGATAAACCAACTTTATTAAAAATGTGCCCAGCA
1 CTAGTCGGATAAACCGACGATATTAAAAATGTGCCCAGCA
* * * *
64460045 ATAGTTGGATAAACCGACAATGATT-----TGTGCCCAGCG
1 CTAGTCGGATAAACCGACGAT-ATTAAAAATGTGCCCAGCA
**
64460081 CTAGTCGGATAAATTGACGATATTAAAAATGTGCCCAGCA
1 CTAGTCGGATAAACCGACGATATTAAAAATGTGCCCAGCA
64460121 CTAGTCGGATAAA
1 CTAGTCGGATAAA
64460134 ATGACAATGA
Statistics
Matches: 124, Mismatches: 29, Indels: 24
0.70 0.16 0.14
Matches are distributed among these distances:
35 6 0.05
36 49 0.40
40 63 0.51
41 6 0.05
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (40 bp):
CTAGTCGGATAAACCGACGATATTAAAAATGTGCCCAGCA
Found at i:64460056 original size:152 final size:152
Alignment explanation
Indices: 64459824--64460146 Score: 389
Period size: 152 Copynumber: 2.1 Consensus size: 152
64459814 TTGCTAGCCG
** * * *
64459824 GATAAACCGACAACAATTTGCGCCCAGCGCTAGTCGGATAACTCGATGGTATTAAAGATGTGCCC
1 GATAAACCGACAATGATTTACGCCCAGCGCTAGTCGGATAACTCAATGGTATTAAAAATGTGCCC
* * *
64459889 AACAGTAGTCAGATAAACTGACAACGATTTACGCCCAACGCTAGTCGGATAACCCAACGATATTA
66 AACAATAGTCAGATAAACCGACAACGATTTACGCCCAACGCTAGTCGGATAAACCAACGATATTA
*
64459954 AAGATGTGCCCAGCACTAGTCA
131 AAAATGTGCCCAGCACTAGTCA
* * *
64459976 GATAAACCGACAATGATTTACGCCCAGTGTTAGTCGGATAAAC-CAACT-TTATTAAAAATGTGC
1 GATAAACCGACAATGATTTACGCCCAGCGCTAGTCGGAT-AACTCAA-TGGTATTAAAAATGTGC
* ** * ** * ***
64460039 CCAGCAATAGTTGGATAAACCGACAATGATTTGTGCCCAGCGCTAGTCGGATAAATTGACGATAT
64 CCAACAATAGTCAGATAAACCGACAACGATTTACGCCCAACGCTAGTCGGATAAACCAACGATAT
*
64460104 TAAAAATGTGCCCAGCACTAGTCG
129 TAAAAATGTGCCCAGCACTAGTCA
**
64460128 GATAAAATGACAATGATTT
1 GATAAACCGACAATGATTT
64460147 GATAGAAAAT
Statistics
Matches: 144, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
152 140 0.97
153 4 0.03
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (152 bp):
GATAAACCGACAATGATTTACGCCCAGCGCTAGTCGGATAACTCAATGGTATTAAAAATGTGCCC
AACAATAGTCAGATAAACCGACAACGATTTACGCCCAACGCTAGTCGGATAAACCAACGATATTA
AAAATGTGCCCAGCACTAGTCA
Found at i:64466203 original size:19 final size:18
Alignment explanation
Indices: 64466174--64466217 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
64466164 TTTGTCTTAG
64466174 TATTATTTTTAAGACATTTT
1 TATT-TTTTTAAGACA-TTT
* *
64466194 TATTTTTTTAGGATATTT
1 TATTTTTTTAAGACATTT
64466212 TATTTT
1 TATTTT
64466218 ATGCACAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 9 0.41
19 9 0.41
20 4 0.18
ACGTcount: A:0.25, C:0.02, G:0.07, T:0.66
Consensus pattern (18 bp):
TATTTTTTTAAGACATTT
Found at i:64469722 original size:25 final size:23
Alignment explanation
Indices: 64469673--64469725 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
64469663 TTTGGCTTGA
*
64469673 TTATGGATATGTTTATGAGTGAG
1 TTATGGATAAGTTTATGAGTGAG
64469696 TTATGGTATAAGTTATATGA-TGAAG
1 TTATGG-ATAAGTT-TATGAGTG-AG
64469721 TTATG
1 TTATG
64469726 TTTATGACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.23
24 8 0.31
25 12 0.46
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.43
Consensus pattern (23 bp):
TTATGGATAAGTTTATGAGTGAG
Found at i:64474919 original size:25 final size:24
Alignment explanation
Indices: 64474872--64474924 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
64474862 CACAAACGCA
*
64474872 GCTCTTTATGAGCATCCTGATATAG
1 GCTCTTTATGAGCATCCTCATAT-G
* * *
64474897 GCTCTTTTTGAGCTTCTTCATATG
1 GCTCTTTATGAGCATCCTCATATG
64474921 GCTC
1 GCTC
64474925 ACTTGAACAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.17, C:0.23, G:0.19, T:0.42
Consensus pattern (24 bp):
GCTCTTTATGAGCATCCTCATATG
Found at i:64490439 original size:40 final size:40
Alignment explanation
Indices: 64490312--64490441 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
64490302 ATGCTGGAAA
* * *
64490312 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
64490352 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
64490392 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
64490432 TTATATCCGG
1 TTATATCCGG
64490442 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:64498311 original size:40 final size:40
Alignment explanation
Indices: 64498245--64498395 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
64498235 AAATTGAATG
* * *
64498245 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
64498284 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
64498324 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
64498364 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
64498396 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:64498409 original size:40 final size:40
Alignment explanation
Indices: 64498282--64498411 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
64498272 ATGCTGGAAA
* * *
64498282 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
64498322 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
64498362 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
64498402 TTATATCCGG
1 TTATATCCGG
64498412 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:64501234 original size:40 final size:40
Alignment explanation
Indices: 64501185--64501392 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
64501175 TCTTCGGAAT
* * *
64501185 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
64501224 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
64501264 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
64501304 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
64501344 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
64501384 TTAGCCCGG
1 TTAGCCCGG
64501393 GTATCATTCA
Statistics
Matches: 146, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 3 0.02
40 142 0.97
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:64505150 original size:46 final size:46
Alignment explanation
Indices: 64505094--64505266 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
64505084 TGGTTGAGCA
*
64505094 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
64505140 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
64505187 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
64505233 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64505267 AGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:64505250 original size:93 final size:93
Alignment explanation
Indices: 64505091--64505261 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
64505081 GGATGGTTGA
* *
64505091 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
64505156 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
64505184 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
64505249 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
64505262 ACTTAAGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64505528 original size:19 final size:20
Alignment explanation
Indices: 64505491--64505528 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64505481 ATAAGGTGGT
64505491 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
64505511 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
64505529 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Done.