Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 211 of 425
Found at i:64509291 original size:18 final size:19
Alignment explanation
Indices: 64509254--64509292 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
64509244 ATATATCTGA
* *
64509254 AAATTTAAGTTCTCTTTTT
1 AAATTTAAATACTCTTTTT
64509273 AAATTTAAATACT-TTTTT
1 AAATTTAAATACTCTTTTT
64509291 AA
1 AA
64509293 TTTTTTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (19 bp):
AAATTTAAATACTCTTTTT
Found at i:64511872 original size:57 final size:57
Alignment explanation
Indices: 64511756--64511868 Score: 156
Period size: 57 Copynumber: 2.0 Consensus size: 57
64511746 AATTTGCACT
* * * * *
64511756 TGTAATTTATAGTTGTTGTCAAAATGTCTCTTAATGTGCATATTTATGCTGTTCAAA
1 TGTAACTTATAGCTGCTGTCAAAATGTATCTTAATGCGCATATTTATGCTGTTCAAA
* *
64511813 TGTAACTTATAGCTGCTGTCACAATGTATCTTAATGCGCATATTTATGTTG-TCAAA
1 TGTAACTTATAGCTGCTGTCAAAATGTATCTTAATGCGCATATTTATGCTGTTCAAA
64511869 ATGTGAATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
56 5 0.10
57 44 0.90
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.42
Consensus pattern (57 bp):
TGTAACTTATAGCTGCTGTCAAAATGTATCTTAATGCGCATATTTATGCTGTTCAAA
Found at i:64518447 original size:30 final size:30
Alignment explanation
Indices: 64518413--64518473 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
64518403 TTCCCGAGCC
*
64518413 TAGGGGTAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
64518443 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
64518473 T
1 T
64518474 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:64519055 original size:68 final size:68
Alignment explanation
Indices: 64518972--64519134 Score: 174
Period size: 67 Copynumber: 2.4 Consensus size: 68
64518962 TGCTGAGTGC
* * *
64518972 ACATCATGT-GTACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTTGCATGGGTGATACTA-
1 ACATCATGTAG-ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAG
* *
64519035 TG-TGT
63 TGAAGG
* * *
64519040 ACATCATGTAGACAAGAGAGCTACG-G-GATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTG
1 ACATCATGTAGACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTG
64519103 AAGG
65 AAGG
*
64519107 ACACCATGTAGACAAGAGAGCTACGAGA
1 ACATCATGTAGACAAGAGAGCTACGAGA
64519135 TAAACTGGCT
Statistics
Matches: 80, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
64 23 0.29
65 3 0.04
66 3 0.04
67 26 0.32
68 24 0.30
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.23
Consensus pattern (68 bp):
ACATCATGTAGACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGA
AGG
Found at i:64524444 original size:18 final size:17
Alignment explanation
Indices: 64524413--64524447 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
64524403 GATTTTGGGT
64524413 TTAAATTTTTTAATTAA
1 TTAAATTTTTTAATTAA
64524430 TTAAATTTATTTAATTAA
1 TTAAATTT-TTTAATTAA
64524448 AAATCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTAAATTTTTTAATTAA
Found at i:64524691 original size:31 final size:31
Alignment explanation
Indices: 64524656--64524714 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
64524646 AAAAGACTTA
64524656 AAATTT-ATAAAATTCTAAAAT-ATATAAATAT
1 AAATTTCA-AAAATTC-AAAATAATATAAATAT
64524687 AAATTTCAAAAATTCAAAATAATATAAA
1 AAATTTCAAAAATTCAAAATAATATAAA
64524715 AAATTATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 5 0.19
31 20 0.77
32 1 0.04
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (31 bp):
AAATTTCAAAAATTCAAAATAATATAAATAT
Found at i:64525342 original size:12 final size:12
Alignment explanation
Indices: 64525320--64525353 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
64525310 AGTTGAACCC
64525320 AATAA-TTAAAT
1 AATAATTTAAAT
64525331 AATAATTTAAAT
1 AATAATTTAAAT
*
64525343 ATTAATTTAAA
1 AATAATTTAAA
64525354 ATAAAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AATAATTTAAAT
Found at i:64525364 original size:22 final size:23
Alignment explanation
Indices: 64525339--64525387 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
64525329 ATAATAATTT
*
64525339 AAATATTA-AT-TTAAAATAAAA
1 AAATATTAGATATCAAAATAAAA
64525360 GAAAT-TTAGATATCAAAATAAAA
1 -AAATATTAGATATCAAAATAAAA
64525383 AAATA
1 AAATA
64525388 AACCTAGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
21 3 0.13
22 10 0.43
23 10 0.43
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (23 bp):
AAATATTAGATATCAAAATAAAA
Found at i:64532229 original size:42 final size:42
Alignment explanation
Indices: 64532170--64532265 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
64532160 GAGATTATGT
* *
64532170 GTAAGACCATATTTGGGATATGGAATC-ATTATGAGACTTCGG
1 GTAAGACCATATCTGGGATATGGAATCGA-TATAAGACTTCGG
* * * *
64532212 GTAAGACCATATCTGGGATATGGCATCGATATAAGATTTTGT
1 GTAAGACCATATCTGGGATATGGAATCGATATAAGACTTCGG
64532254 GTAAGACCATAT
1 GTAAGACCATAT
64532266 GTAACGCCCC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 46 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.31
Consensus pattern (42 bp):
GTAAGACCATATCTGGGATATGGAATCGATATAAGACTTCGG
Found at i:64534451 original size:33 final size:33
Alignment explanation
Indices: 64534366--64534457 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 33
64534356 ATGCATTTTG
* * *
64534366 GATACTAT-ACTGAAATGGGCTAAGACCACACT
1 GATACTGTCACTGATATGGGCTAAGGCCACACT
64534398 GATACTGTCACTG-TATTGGGCTAAGGCCACACT
1 GATACTGTCACTGATA-TGGGCTAAGGCCACACT
* *
64534431 GATATTG-CAACTGATATGGGCTTAGGC
1 GATACTGTC-ACTGATATGGGCTAAGGC
64534458 TCAGACTGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
32 9 0.18
33 40 0.78
34 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (33 bp):
GATACTGTCACTGATATGGGCTAAGGCCACACT
Found at i:64541429 original size:39 final size:40
Alignment explanation
Indices: 64541375--64541474 Score: 114
Period size: 40 Copynumber: 2.5 Consensus size: 40
64541365 GAATCACGTA
*
64541375 CCTTCGGGAT-TTAA-CCGGATTTAACCACAAGCACAATTG
1 CCTTCGGG-TCTTAACCCGGATTTAACAACAAGCACAATTG
*** **
64541414 CCTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAATTG
1 CCTTCGGGTCTTAACCCGGATTTAACAACAAGCACAATTG
*
64541454 CCTTCGGGTCTTAGCCCGGAT
1 CCTTCGGGTCTTAACCCGGAT
64541475 ATAATCACTA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.02
39 12 0.23
40 39 0.75
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (40 bp):
CCTTCGGGTCTTAACCCGGATTTAACAACAAGCACAATTG
Found at i:64547692 original size:46 final size:45
Alignment explanation
Indices: 64547633--64547798 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 45
64547623 GCCCATAACC
*
64547633 GAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGTATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGAGC-TTCGTATCCATAAGT
* * * * *
64547679 GAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGT-TACATTTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCG-A-GCTTCGTATCCA--TAAGT
*
64547726 GAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGAG-C-TTCGTATCCATAAGT
* *
64547772 GAACTCAGACTCAACTCAACAAGTTCG
1 GAACTCGGACTCAACTCAACGAGTTCG
64547799 GATGCCCAAA
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
44 1 0.01
45 3 0.03
46 56 0.57
47 34 0.35
48 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGAGCTTCGTATCCATAAGT
Found at i:64547791 original size:93 final size:93
Alignment explanation
Indices: 64547632--64547804 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
64547622 CGCCCATAAC
* * *
64547632 CGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
64547697 ACGAGTTCGAATGCCTAGTTACATTTCA
66 ACAAGTTCGAATGCCTAGTTACATTTCA
*
64547725 CGAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATCCATAAGTGAACTCAGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAGTGAACTCAGACTCAACTC
*
64547789 AACAAGTTCGGATGCC
65 AACAAGTTCGAATGCC
64547805 CAAATATCCG
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACAAGTTCGAATGCCTAGTTACATTTCA
Found at i:64564310 original size:38 final size:35
Alignment explanation
Indices: 64564251--64564368 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
64564241 TCAATCATGC
*
64564251 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
64564290 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
64564321 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
64564352 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
64564369 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:64564312 original size:31 final size:31
Alignment explanation
Indices: 64564274--64564368 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
64564264 CCTTTTCATA
*
64564274 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64564305 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64564336 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
64564367 TT
1 TT
64564369 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:64564611 original size:24 final size:24
Alignment explanation
Indices: 64564560--64564702 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
64564550 GCTTTATCAT
*
64564560 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
64564585 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
64564609 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
64564632 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
64564656 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
64564680 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64564703 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64564639 original size:47 final size:48
Alignment explanation
Indices: 64564560--64564701 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
64564550 GCTTTATCAT
* *
64564560 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
64564609 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
64564656 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
64564702 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:64564660 original size:71 final size:72
Alignment explanation
Indices: 64564559--64564702 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
64564549 TGCTTTATCA
*
64564559 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
64564624 GCCCTTT
66 GCCCTTT
* * **
64564631 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
64564694 AGCCCTTT
65 AGCCCTTT
64564702 T
1 T
64564703 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:64564775 original size:20 final size:20
Alignment explanation
Indices: 64564752--64564811 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
64564742 TATGATTACC
64564752 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
64564772 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
*
64564792 TCATGTGCATCTCATACATA
1 TCATGTGCATATCATACATA
64564812 CCATATTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:64564886 original size:25 final size:25
Alignment explanation
Indices: 64564854--64564901 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64564844 ATACATAAAC
* * *
64564854 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
64564879 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
64564902 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:64572441 original size:31 final size:31
Alignment explanation
Indices: 64572403--64572466 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
64572393 CCTTTTCATA
64572403 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
64572434 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
64572465 TT
1 TT
64572467 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:64572709 original size:23 final size:23
Alignment explanation
Indices: 64572679--64572798 Score: 186
Period size: 23 Copynumber: 5.1 Consensus size: 23
64572669 CCTAGCCTCT
*
64572679 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
64572702 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
64572725 TTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
64572748 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
64572772 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
64572796 TTT
1 TTT
64572799 TTCACTTCCT
Statistics
Matches: 93, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
23 47 0.51
24 46 0.49
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:64572761 original size:24 final size:24
Alignment explanation
Indices: 64572658--64572799 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
64572648 GCTTTATCAT
*
64572658 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
64572683 ATAACTGGGGCAAAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
64572706 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
64572729 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
64572753 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
64572777 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
64572800 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
23 45 0.41
24 54 0.49
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:64572791 original size:71 final size:71
Alignment explanation
Indices: 64572657--64572799 Score: 218
Period size: 71 Copynumber: 2.0 Consensus size: 71
64572647 TGCTTTATCA
*
64572657 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAG
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAG
64572722 CCCTTT
66 CCCTTT
* * *
64572728 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCC-TTTAATAACTGGGGCATA
64572791 AGCCCTTT
64 AGCCCTTT
64572799 T
1 T
64572800 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
70 27 0.41
71 39 0.59
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAG
CCCTTT
Found at i:64572799 original size:48 final size:47
Alignment explanation
Indices: 64572658--64572799 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 47
64572648 GCTTTATCAT
* *
64572658 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCC-TTTA
1 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTTTA
*
64572706 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
64572753 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTT
64572800 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
46 18 0.20
47 35 0.40
48 35 0.40
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCCTTTTA
Found at i:64572875 original size:20 final size:20
Alignment explanation
Indices: 64572850--64572907 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
64572840 TATGATTACC
64572850 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
64572870 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
64572890 TCATGTGC--ATCATACATA
1 TCATGTGCATATCATACATA
64572908 CCATATTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.25
20 27 0.75
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:64572982 original size:25 final size:25
Alignment explanation
Indices: 64572950--64572997 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
64572940 ATACATAAAC
* * *
64572950 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
64572975 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
64572998 CATTATAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:64576543 original size:26 final size:27
Alignment explanation
Indices: 64576508--64576569 Score: 99
Period size: 26 Copynumber: 2.3 Consensus size: 27
64576498 AGATATATGC
*
64576508 CCCTATGAGGTAAAATGACTGTTACG-
1 CCCTATGAGGTAAAATGACTGATACGA
*
64576534 CCCTATGAGGTAAAATGACTGATATGA
1 CCCTATGAGGTAAAATGACTGATACGA
64576561 CCCTATGAG
1 CCCTATGAG
64576570 ATGTATGACT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
26 24 0.73
27 9 0.27
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (27 bp):
CCCTATGAGGTAAAATGACTGATACGA
Found at i:64576891 original size:34 final size:34
Alignment explanation
Indices: 64576853--64576939 Score: 149
Period size: 34 Copynumber: 2.6 Consensus size: 34
64576843 ACTGATATTA
64576853 TTACTGAATTGGGCTAAGGCCCACACTGACACTG
1 TTACTGAATTGGGCTAAGGCCCACACTGACACTG
* *
64576887 TTACTGAATTGGGCTAAGGCCTACACTGATACTG
1 TTACTGAATTGGGCTAAGGCCCACACTGACACTG
64576921 TTACTGAA-TGGGCTAAGGC
1 TTACTGAATTGGGCTAAGGC
64576940 GCTAACTGAG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
33 11 0.22
34 40 0.78
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (34 bp):
TTACTGAATTGGGCTAAGGCCCACACTGACACTG
Found at i:64584335 original size:27 final size:27
Alignment explanation
Indices: 64584305--64584378 Score: 107
Period size: 26 Copynumber: 2.8 Consensus size: 27
64584295 CAAATTGATG
*
64584305 AAATGACTGTTATGCCCCTATAAGGTA
1 AAATGACTGATATGCCCCTATAAGGTA
*
64584332 AAATGACT-ACTATG-CCCTATGAGGTA
1 AAATGACTGA-TATGCCCCTATAAGGTA
64584358 AAATGACTGATATGCCCCTAT
1 AAATGACTGATATGCCCCTAT
64584379 GAGATGTATG
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
26 23 0.55
27 19 0.45
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (27 bp):
AAATGACTGATATGCCCCTATAAGGTA
Found at i:64586909 original size:13 final size:13
Alignment explanation
Indices: 64586891--64586916 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64586881 GGAATGGTGT
64586891 ATATGATATGAAA
1 ATATGATATGAAA
64586904 ATATGATATGAAA
1 ATATGATATGAAA
64586917 GAACATTACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31
Consensus pattern (13 bp):
ATATGATATGAAA
Found at i:64591198 original size:24 final size:24
Alignment explanation
Indices: 64591164--64591304 Score: 72
Period size: 24 Copynumber: 5.8 Consensus size: 24
64591154 GTCAACATTA
*
64591164 GCACTAAGTGTGCGAATTTGAATG
1 GCACTATGTGTGCGAATTTGAATG
*
64591188 GCACTATGTGTGTTG-ATTTGAATG
1 GCACTATGTGTG-CGAATTTGAATG
* * ** * * *
64591212 TCAATACATGAGTGAATCTTCAA-G
1 GCACTATGTGTGCGAAT-TTGAATG
* * **
64591236 GCACTATGTGTGCG-GTGTAGCGTG
1 GCACTATGTGTGCGAAT-TTGAATG
* ** *
64591260 GCACTATGTGTGCGAACTTGTTTA
1 GCACTATGTGTGCGAATTTGAATG
64591284 GCACTATGTGTGCGATATTTG
1 GCACTATGTGTGCGA-ATTTG
64591305 TTGATGATAT
Statistics
Matches: 84, Mismatches: 27, Indels: 11
0.69 0.22 0.09
Matches are distributed among these distances:
23 4 0.05
24 71 0.85
25 9 0.11
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAATTTGAATG
Found at i:64599073 original size:24 final size:24
Alignment explanation
Indices: 64599039--64599179 Score: 63
Period size: 24 Copynumber: 5.8 Consensus size: 24
64599029 GTCAACATTA
*
64599039 GCACTAAGTGTGCGAATTTGAATG
1 GCACTATGTGTGCGAATTTGAATG
*
64599063 GCACTATGTGTGTTG-ATTTGAATG
1 GCACTATGTGTG-CGAATTTGAATG
* * ** * * *
64599087 TCAATACATGAGTGAATCTTCAA-G
1 GCACTATGTGTGCGAAT-TTGAATG
* * **
64599111 GCACTATGTGTGCG-GTGTAGCGTG
1 GCACTATGTGTGCGAAT-TTGAATG
* ** *
64599135 GCACTATGTGTGCGAACTTGTTTA
1 GCACTATGTGTGCGAATTTGAATG
*
64599159 GCACTATGTGTGTGAGATTTG
1 GCACTATGTGTGCGA-ATTTG
64599180 TTGATGATAT
Statistics
Matches: 83, Mismatches: 28, Indels: 11
0.68 0.23 0.09
Matches are distributed among these distances:
23 4 0.05
24 70 0.84
25 9 0.11
ACGTcount: A:0.23, C:0.13, G:0.29, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAATTTGAATG
Found at i:64605839 original size:57 final size:57
Alignment explanation
Indices: 64605701--64605841 Score: 187
Period size: 57 Copynumber: 2.5 Consensus size: 57
64605691 ATATAGACAG
* *
64605701 CAGGATTACCAGTCCAGGCTAAATACTGTCTACAATATATACTCAATAGAGCTTAGT
1 CAGGATTACCAGTCCAGGCTAAATCCAGTCTACAATATATACTCAATAGAGCTTAGT
*
64605758 CAGGATTACCAGTCCAGGCTAAATCCAGTCTACAATATATGCTCTAA-AGAGCTT-GAT
1 CAGGATTACCAGTCCAGGCTAAATCCAGTCTACAATATATACTC-AATAGAGCTTAG-T
* * **
64605815 CTGGATTACCCGTCCTCGCTAAATCCA
1 CAGGATTACCAGTCCAGGCTAAATCCA
64605842 ATCCATAACA
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
56 1 0.01
57 72 0.96
58 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (57 bp):
CAGGATTACCAGTCCAGGCTAAATCCAGTCTACAATATATACTCAATAGAGCTTAGT
Found at i:64606209 original size:2 final size:2
Alignment explanation
Indices: 64606204--64606237 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
64606194 ACACACACAC
*
64606204 AT AT AT AT AT AT AT AT AT AT AT AT GAT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT A
64606238 CAATTCACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:64609178 original size:93 final size:93
Alignment explanation
Indices: 64609070--64609241 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
64609060 CGCCCATAAG
* * *
64609070 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
64609135 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
64609163 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
64609228 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
64609242 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:64609238 original size:46 final size:46
Alignment explanation
Indices: 64609063--64609238 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
64609053 TGTAACCCGC
* * *
64609063 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
64609109 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
64609159 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
64609202 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
64609239 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.57
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:64616270 original size:93 final size:93
Alignment explanation
Indices: 64616158--64616329 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64616148 CGCCCATAAG
* *
64616158 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
64616223 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
64616251 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
64616316 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
64616330 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:64616326 original size:46 final size:46
Alignment explanation
Indices: 64616151--64616326 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
64616141 TGTAACCCGC
* * *
64616151 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
64616197 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
64616247 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
64616290 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
64616327 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:64622258 original size:40 final size:40
Alignment explanation
Indices: 64622202--64622351 Score: 164
Period size: 39 Copynumber: 3.8 Consensus size: 40
64622192 TCGAATGGTG
* * *
64622202 TCCGGG-CTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGTC-AAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
64622243 TCCGGGTCAA-TCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
64622282 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TAAA
1 TCCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
64622321 TCCGGG-CTAATTCCCGAAGGCAATTGTGCGA
1 TCCGGGTC-AAGTCCCGAAGGCATTTGTGCGA
64622352 ATCACTATAA
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 44 0.47
40 40 0.43
41 8 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGTCAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64622326 original size:39 final size:40
Alignment explanation
Indices: 64622202--64622379 Score: 193
Period size: 40 Copynumber: 4.5 Consensus size: 40
64622192 TCGAATGGTG
* * *
64622202 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
64622243 TCCGGG-TCAA-TCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
64622282 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
64622321 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64622362 -CCGGGCTATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
64622380 ACAATCGAGC
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
39 46 0.40
40 60 0.52
41 10 0.09
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64622351 original size:79 final size:79
Alignment explanation
Indices: 64622203--64622419 Score: 215
Period size: 79 Copynumber: 2.7 Consensus size: 79
64622193 CGAATGGTGT
* * * *
64622203 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAATCCCGAAGGCAATTG
* *
64622268 TGCGAGTTACCAAAA
65 TGCGAATCACCAAAA
* *
64622283 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AA-TCCCGAAGGCAATT
* *
64622346 GTGCGAATCACTATAA
64 GTGCGAATCACCAAAA
* * * * * * * *
64622362 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCG-CTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT-GACTAAATCCGGGTCAATCCCGAAGG
64622420 TACGTGATTC
Statistics
Matches: 112, Mismatches: 20, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
77 1 0.01
78 12 0.11
79 64 0.57
80 35 0.31
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAATCCCGAAGGCAATTGT
GCGAATCACCAAAA
Found at i:64622400 original size:40 final size:40
Alignment explanation
Indices: 64622322--64622405 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
64622312 AGTTATAAAT
* * *
64622322 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
64622362 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
64622402 CCGG
1 CCGG
64622406 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:64628465 original size:5 final size:5
Alignment explanation
Indices: 64628455--64628542 Score: 58
Period size: 5 Copynumber: 17.4 Consensus size: 5
64628445 TTTCTTGCTC
* * * * *
64628455 TTCTT TTCTT TTCTCAC TTGTT TT-TT TTCTTT TTCTA TT-TT TGCAT
1 TTCTT TTCTT TTCT--T TTCTT TTCTT TTC-TT TTCTT TTCTT TTCTT
64628501 T-CTT TTCTT TT-TT TTCTT TTCTTT TTCATT TTCTT TTCTT TT
1 TTCTT TTCTT TTCTT TTCTT TTC-TT TTC-TT TTCTT TTCTT TT
64628543 TTCACATTCA
Statistics
Matches: 66, Mismatches: 9, Indels: 16
0.73 0.10 0.18
Matches are distributed among these distances:
4 13 0.20
5 35 0.53
6 15 0.23
7 3 0.05
ACGTcount: A:0.05, C:0.17, G:0.02, T:0.76
Consensus pattern (5 bp):
TTCTT
Found at i:64628495 original size:17 final size:18
Alignment explanation
Indices: 64628475--64628567 Score: 66
Period size: 17 Copynumber: 4.9 Consensus size: 18
64628465 TTCTCACTTG
64628475 TTTT-TTTTCTTTTTCTA
1 TTTTCTTTTCTTTTTCTA
* * *
64628492 TTTT-TGCATTCTTTTCTTTT
1 TTTTCT--TTTCTTTT-TCTA
64628512 TTTTCTTTTCTTTTTC-A
1 TTTTCTTTTCTTTTTCTA
*
64628529 TTTTCTTTTCTTTTTTCACA
1 TTTTCTTTTC-TTTTTC-TA
64628549 TTCATTCTTTTCTTTTTCT
1 TT--TTCTTTTCTTTTTCT
64628568 CTCAATTGAT
Statistics
Matches: 60, Mismatches: 7, Indels: 15
0.73 0.09 0.18
Matches are distributed among these distances:
17 15 0.25
18 7 0.12
19 14 0.23
20 9 0.15
21 7 0.12
22 8 0.13
ACGTcount: A:0.06, C:0.17, G:0.01, T:0.75
Consensus pattern (18 bp):
TTTTCTTTTCTTTTTCTA
Found at i:64628505 original size:19 final size:20
Alignment explanation
Indices: 64628481--64628532 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 20
64628471 CTTGTTTTTT
64628481 TTCTTTTTCTATTTTTGC-A
1 TTCTTTTTCTATTTTTGCTA
* * *
64628500 TTC-TTTTCTTTTTTTTCTT
1 TTCTTTTTCTATTTTTGCTA
64628519 TTCTTTTTC-ATTTT
1 TTCTTTTTCTATTTT
64628533 CTTTTCTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 12 0.44
19 10 0.37
20 5 0.19
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.77
Consensus pattern (20 bp):
TTCTTTTTCTATTTTTGCTA
Found at i:64628532 original size:12 final size:11
Alignment explanation
Indices: 64628503--64628542 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
64628493 TTTTGCATTC
64628503 TTTTC-TTT-T
1 TTTTCTTTTCT
64628512 TTTTCTTTTCT
1 TTTTCTTTTCT
64628523 TTTTCATTTTC-
1 TTTTC-TTTTCT
64628534 TTTTCTTTT
1 TTTTCTTTT
64628543 TTCACATTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 5 0.18
10 7 0.25
11 11 0.39
12 5 0.18
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTCTTTTCT
Found at i:64628535 original size:31 final size:32
Alignment explanation
Indices: 64628475--64628544 Score: 92
Period size: 31 Copynumber: 2.2 Consensus size: 32
64628465 TTCTCACTTG
64628475 TTTTTTTTCTTTTTCTATTTTTGCATTCTTTTC
1 TTTTTTTTCTTTTTC-ATTTTTGCATTCTTTTC
64628508 TTTTTTTTC-TTTTC-TTTTT-CATTTTCTTTTC
1 TTTTTTTTCTTTTTCATTTTTGCA--TTCTTTTC
64628539 TTTTTT
1 TTTTTT
64628545 CACATTCATT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
29 2 0.06
30 5 0.14
31 14 0.40
32 5 0.14
33 9 0.26
ACGTcount: A:0.04, C:0.14, G:0.01, T:0.80
Consensus pattern (32 bp):
TTTTTTTTCTTTTTCATTTTTGCATTCTTTTC
Found at i:64628563 original size:5 final size:5
Alignment explanation
Indices: 64628500--64628542 Score: 61
Period size: 5 Copynumber: 8.4 Consensus size: 5
64628490 TATTTTTGCA
64628500 TTCTT TTCTT TT-TT TTCTT TTCTTT TTCATT TTCTT TTCTT TT
1 TTCTT TTCTT TTCTT TTCTT TTC-TT TTC-TT TTCTT TTCTT TT
64628543 TTCACATTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
4 4 0.11
5 21 0.60
6 10 0.29
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.81
Consensus pattern (5 bp):
TTCTT
Found at i:64633729 original size:30 final size:31
Alignment explanation
Indices: 64633653--64633741 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 31
64633643 TCCAACTCAC
* *
64633653 GAGCTAAACCTTAGCTCAACTTCAGCT-TAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTCAAG
* * *
64633683 GAGTTTAACCTCAGCTCAACTTTAGCTCAAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTCAAG
* *
64633714 G-GCTAAAGCTTAGCTC-ATTTTAGCTCAA
1 GAGCTAAACCTTAGCTCAACTTTAGCTCAA
64633742 ACCCGATTTT
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
29 11 0.23
30 34 0.71
31 3 0.06
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
GAGCTAAACCTTAGCTCAACTTTAGCTCAAG
Found at i:64633822 original size:17 final size:18
Alignment explanation
Indices: 64633783--64633825 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
64633773 AAATTCGAAT
64633783 ATATTTGTTTAAGCATTA
1 ATATTTGTTTAAGCATTA
* *
64633801 A-ATTTGTTTTA-TATTA
1 ATATTTGTTTAAGCATTA
64633817 ATATTTGTT
1 ATATTTGTT
64633826 ATTAATATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 5 0.23
17 16 0.73
18 1 0.05
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.58
Consensus pattern (18 bp):
ATATTTGTTTAAGCATTA
Found at i:64635429 original size:21 final size:23
Alignment explanation
Indices: 64635386--64635436 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
64635376 TTTAAGTATT
* *
64635386 CATACCCACAACACATCTCATCA
1 CATACACACAACACATCTAATCA
64635409 CATACACACAAC-CA-CTAATCA
1 CATACACACAACACATCTAATCA
64635430 CAT-CACA
1 CATACACA
64635437 ATTGCATGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 4 0.15
21 9 0.35
22 2 0.08
23 11 0.42
ACGTcount: A:0.43, C:0.41, G:0.00, T:0.16
Consensus pattern (23 bp):
CATACACACAACACATCTAATCA
Found at i:64638999 original size:39 final size:40
Alignment explanation
Indices: 64638909--64639150 Score: 375
Period size: 40 Copynumber: 6.1 Consensus size: 40
64638899 TCGGATTTAA
* * *
64638909 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
64638949 CCGGATATAGTAACTCGCACCAATGCCTTC-GGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
64638988 CCGGATATAGTAACTCGCAC-AATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
64639027 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
64639067 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
64639107 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
64639147 CCGG
1 CCGG
64639151 TTATCATCCA
Statistics
Matches: 192, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
38 9 0.05
39 59 0.31
40 124 0.65
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:64643098 original size:79 final size:77
Alignment explanation
Indices: 64642991--64643135 Score: 175
Period size: 79 Copynumber: 1.9 Consensus size: 77
64642981 TATGGTAACC
* *
64642991 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTGCACAAATGCCTTCGGGTCTTAGC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGC-ATAGCAC-AATGCCTTCGGGTCTTAAC
64643055 CCGGATAGAATGACT
63 CCGGATAGAATGACT
* * * * * * *
64643070 CGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCTAGCACATTGCCTTCGGGTCTTAACCCG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCATAGCACAATGCCTTCGGGTCTTAACCCG
64643135 G
66 G
64643136 TTATAATTTC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
77 21 0.38
78 6 0.11
79 29 0.52
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (77 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCATAGCACAATGCCTTCGGGTCTTAACCCG
GATAGAATGACT
Found at i:64643128 original size:37 final size:39
Alignment explanation
Indices: 64643000--64643140 Score: 135
Period size: 40 Copynumber: 3.6 Consensus size: 39
64642990 CCGCACCAAG
* * * * * *
64643000 GCCTACGGGACTTAACCCGGATATCACGA-TTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATAT-ATGACTAGCACGAAT
* *
64643039 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATA-TATGACTAGCACGAAT
* *
64643079 GCCTTCGGGTCTTAGCCCGGATATA-GCCTAGCAC-ATT
1 GCCTTCGGGTCTTAGCCCGGATATATGACTAGCACGAAT
* *
64643116 GCCTTCGGGTCTTAACCCGGTTATA
1 GCCTTCGGGTCTTAGCCCGGATATA
64643141 ATTTCCAGCA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
37 25 0.29
38 7 0.08
39 24 0.28
40 31 0.36
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
GCCTTCGGGTCTTAGCCCGGATATATGACTAGCACGAAT
Found at i:64651084 original size:79 final size:80
Alignment explanation
Indices: 64650941--64651148 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
64650931 ACCTTCGGAG
* * ** * * * *
64650941 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
64651005 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
64651020 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
64651082 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
64651099 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
64651149 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:64651093 original size:40 final size:40
Alignment explanation
Indices: 64651041--64651148 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
64651031 TATCACGATT
** *
64651041 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
64651081 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
64651121 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
64651149 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:64655361 original size:22 final size:22
Alignment explanation
Indices: 64655335--64655379 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
64655325 CATAAATTGT
*
64655335 AAGTACATGTGTAAATAATGTG
1 AAGTACATGTGCAAATAATGTG
64655357 AAGTACATGTGCAAATAATGTG
1 AAGTACATGTGCAAATAATGTG
64655379 A
1 A
64655380 CAACATAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (22 bp):
AAGTACATGTGCAAATAATGTG
Found at i:64655692 original size:43 final size:43
Alignment explanation
Indices: 64655606--64655692 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
64655596 AAATTATATG
* * * **
64655606 ATCTGAACTCATTGAGTTGGTTTGAGTTTATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGATCTGAGTTCATGATATACATGAC
* *
64655649 ATCTGAGCTCATTGAGTTGATCTGAGTTCATGATGTACATGAC
1 ATCTGAACTCATTGAGTTGATCTGAGTTCATGATATACATGAC
64655692 A
1 A
64655693 CATGTAATTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (43 bp):
ATCTGAACTCATTGAGTTGATCTGAGTTCATGATATACATGAC
Found at i:64669597 original size:48 final size:48
Alignment explanation
Indices: 64669536--64670313 Score: 1196
Period size: 48 Copynumber: 16.0 Consensus size: 48
64669526 ATATACACAC
* * *
64669536 ATCTCCTATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
64669584 ATCTCATACATATTTCACACTAGACATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
64669632 ATCTCATTCATATTTCGCACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64669680 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
64669728 ATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACAGATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
64669778 ATCTCATACACATTTCACGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
64669826 ATCTCATTCAGATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64669874 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
64669922 ATCTCATTCATATTTCGCACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64669970 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* **
64670020 ATCTCATACACATTTCACAGAAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64670068 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64670118 ATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64670166 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
64670216 ATCTCATACATATTTCACATTAGCCATTCGGCTTTATCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
64670264 ATTTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
64670312 AT
1 AT
64670314 ATATTTATCT
Statistics
Matches: 672, Mismatches: 50, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
48 492 0.73
50 180 0.27
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:64669793 original size:146 final size:144
Alignment explanation
Indices: 64669536--64670313 Score: 1196
Period size: 146 Copynumber: 5.3 Consensus size: 144
64669526 ATATACACAC
* *
64669536 ATCTCCTATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * * * *
64669601 CACTAGACATTCGGCTTTACCACATATACATATCTCATTCATATTTCGCACTAGCCATTTGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
64669666 TACCACATATACAT
131 TACCACATATACAT
*
64669680 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
* * *
64669745 CACACTAGCCATTCGGCTTTACCACAGATACATATCTCATACACATTTCACGTTAGCCATTCGGC
64 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
64669810 TTTACCACATATACAT
129 TTTACCACATATACAT
* *
64669826 ATCTCATTCAGATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * * * *
64669891 CATTAGCCATTCGACTTTACCACATATACATATCTCATTCATATTTCGCACTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
64669956 TACCACATATACAT
131 TACCACATATACAT
* * *
64669970 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACACATTT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
** *
64670035 CACAGAAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG
64 CACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCG
64670100 GCTTTACCACATATACAT
127 GCTTTACCACATATACAT
* * *
64670118 ATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
*
64670183 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
64 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
*
64670248 TTTATCACATATACAT
129 TTTACCACATATACAT
* * *
64670264 ATTTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
64670314 ATATTTATCT
Statistics
Matches: 581, Mismatches: 45, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
144 138 0.24
146 355 0.61
148 88 0.15
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (144 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
TACCACATATACAT
Found at i:64669802 original size:98 final size:98
Alignment explanation
Indices: 64669545--64670313 Score: 1184
Period size: 98 Copynumber: 7.9 Consensus size: 98
64669535 CATCTCCTAT
* *
64669545 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGACA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
64669610 TTCGGCTTTACCACATATACATATCTCAT-T-C
66 TTCGGCTTTACCACATATACATATCTCATATAC
* * *
64669641 ATATTTCGCACTAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
64669706 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAC
* * *
64669739 ATATTTCACACTAGCCATTCGGCTTTACCACAGATACATATCTCATACACATTTCACGTTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
64669804 TTCGGCTTTACCACATATACATATCTCAT-T-C
66 TTCGGCTTTACCACATATACATATCTCATATAC
*
64669835 AGATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
64669900 TTCGACTTTACCACATATACATATCTCAT-T-C
66 TTCGGCTTTACCACATATACATATCTCATATAC
* *
64669931 ATATTTCGCACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
64669996 CATTCGGCTTTACCACATATACATATCTC--ATAC
64 CATTCGGCTTTACCACATATACATATCTCATATAC
* ** *
64670029 ACATTTCACAGAAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
64670094 CATTCGGCTTTACCACATATACATATCTC--ATAC
64 CATTCGGCTTTACCACATATACATATCTCATATAC
* * *
64670127 ACATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGC
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
64670192 CATTCGGCTTTACCACATATACATATCTC--ATAC
64 CATTCGGCTTTACCACATATACATATCTCATATAC
* * *
64670225 ATATTTCACATTAGCCATTCGGCTTTATCACATATACATATTTCATACATATTTCACATTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
*
64670290 TTCAGCTTTACCACATATACATAT
66 TTCGGCTTTACCACATATACATAT
64670314 ATATTTATCT
Statistics
Matches: 636, Mismatches: 31, Indels: 12
0.94 0.05 0.02
Matches are distributed among these distances:
96 267 0.42
97 3 0.00
98 366 0.58
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (98 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAC
Found at i:64672428 original size:57 final size:57
Alignment explanation
Indices: 64672361--64672521 Score: 225
Period size: 57 Copynumber: 2.8 Consensus size: 57
64672351 CTGACTGATT
** * * *
64672361 TCGCACACATAGCACTCGATTAAAGAACTCGCACACATAGTGCCTCAATTAC-CATTC
1 TCGCACACATAGTGCTCGATTGAAGAACTTGCACACATAGTGCCTCAACTACTCA-TC
* *
64672418 TCGCACACATAGTGCTCGATTGAAGAACTTGCACACACAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTTGCACACATAGTGCCTCAACTACTCATC
* *
64672475 TAGCACACATAGTGCTCGGTTGAAGAACTTGCACACATAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTTGCACACATAGTGCCTCA
64672522 TAATTCCAGC
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
57 92 0.99
58 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTTGCACACATAGTGCCTCAACTACTCATC
Found at i:64672460 original size:28 final size:28
Alignment explanation
Indices: 64672363--64672517 Score: 116
Period size: 28 Copynumber: 5.5 Consensus size: 28
64672353 GACTGATTTC
** * *
64672363 GCACACATAGCACTCGATTAAAGAACTC
1 GCACACATAGTGCTCGATTGAAGAACTT
* ** * *
64672391 GCACACATAGTGCCTCAATT-ACCATTCTC
1 GCACACATAGTG-CTCGATTGAAGA-ACTT
64672420 GCACACATAGTGCTCGATTGAAGAACTT
1 GCACACATAGTGCTCGATTGAAGAACTT
* * * * * *
64672448 GCACACACAGTGCCTCAACT-ACTGATCTA
1 GCACACATAGTG-CTCGATTGA-AGAACTT
*
64672477 GCACACATAGTGCTCGGTTGAAGAACTT
1 GCACACATAGTGCTCGATTGAAGAACTT
64672505 GCACACATAGTGC
1 GCACACATAGTGC
64672518 CTCATAATTC
Statistics
Matches: 97, Mismatches: 24, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
28 53 0.55
29 44 0.45
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (28 bp):
GCACACATAGTGCTCGATTGAAGAACTT
Found at i:64672601 original size:40 final size:40
Alignment explanation
Indices: 64672527--64672802 Score: 421
Period size: 40 Copynumber: 6.9 Consensus size: 40
64672517 CCTCATAATT
* * * *
64672527 CCAGCACGAATGC-CTTCGAGG-TTTAACCCAGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATAACA
* *
64672566 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
64672606 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
* *
64672646 CCAGCACGAATGCTCTTCGGGACTTAGCCCGAATATAACT
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
64672686 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
64672726 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
64672766 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
64672803 TAACTCTCAA
Statistics
Matches: 218, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 14 0.06
40 204 0.94
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.21
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
Found at i:64674135 original size:37 final size:37
Alignment explanation
Indices: 64674080--64674181 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
64674070 GAATAGTCCT
* *
64674080 CACACGTAGTTATTGGGTCTTACCCGGACAAAATCTC
1 CACACGTAGTCATCGGGTCTTACCCGGACAAAATCTC
*
64674117 CACACGTAGTCATCGGGTCTTACCCGGACATAATCTC
1 CACACGTAGTCATCGGGTCTTACCCGGACAAAATCTC
*
64674154 CACACATAGTCATCGGGTCTTACCCGGA
1 CACACGTAGTCATCGGGTCTTACCCGGA
64674182 ATATATTTCC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
CACACGTAGTCATCGGGTCTTACCCGGACAAAATCTC
Found at i:64674383 original size:48 final size:48
Alignment explanation
Indices: 64674322--64674998 Score: 1072
Period size: 48 Copynumber: 14.0 Consensus size: 48
64674312 ATATACACAC
* *
64674322 ATCTCCTATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64674370 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64674418 ATCTCAT-CATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
64674465 AT-TCATACATATTTCACACTAGCCATTCGGCTTTACCACAAATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
64674512 ATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
64674562 ATCTCATCCACATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
64674610 ATCTCATTCAAATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
64674658 ATCTCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
64674706 ATCTCATTCATATTTCGCACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
64674754 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
64674804 ATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
64674852 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
64674902 ATCTCATACATATTTCACATTAGCCATTCGGCTTTA-CACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
64674949 ATTTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
64674997 AT
1 AT
64674999 ATATTTATCT
Statistics
Matches: 589, Mismatches: 31, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
46 4 0.01
47 128 0.22
48 321 0.54
50 136 0.23
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:64674615 original size:98 final size:96
Alignment explanation
Indices: 64674322--64674998 Score: 1099
Period size: 98 Copynumber: 7.0 Consensus size: 96
64674312 ATATACACAC
* *
64674322 ATCTCCTATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
64674387 CACTAGCCATTCGGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
64674418 ATCTCAT-CATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT-TCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
64674481 CACTAGCCATTCGGCTTTACCACAAATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
* * *
64674512 ATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATCCACATTT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
64674577 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
* *
64674610 ATCTCATTCAAATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
64674675 CATTAGCCATTCGACTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
* * *
64674706 ATCTCATTCATATTTCGCACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
64674771 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
* * *
64674804 ATCTCATACACATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
64674869 CACATTAGCCATTCGGCTTTACCACATATACAT
64 CACATTAGCCATTCGGCTTTACCACATATACAT
* *
64674902 ATCTCATACATATTTCACATTAGCCATTCGGCTTTA-CACATATACATATTTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
64674966 CATTAGCCATTCAGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
64674997 AT
1 AT
64674999 ATATTTATCT
Statistics
Matches: 549, Mismatches: 26, Indels: 13
0.93 0.04 0.02
Matches are distributed among these distances:
94 49 0.09
95 84 0.15
96 144 0.26
97 56 0.10
98 216 0.39
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (96 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACAT
Found at i:64674785 original size:146 final size:144
Alignment explanation
Indices: 64674322--64674998 Score: 1090
Period size: 146 Copynumber: 4.7 Consensus size: 144
64674312 ATATACACAC
* *
64674322 ATCTCCTATATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
64674387 CACTAGCCATTCGGCTTTACCACATATACATATCTCA-TCATATTTCACACTAGCCATTCGGCTT
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTT
64674451 TACCACATATACAT
131 TACCACATATACAT
* *
64674465 AT-TCATACATATTTCACACTAGCCATTCGGCTTTACCACAAATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
* * * *
64674529 CACACTAGCCATTCGGCTTTACCACATATACATATCTCATCCACATTTCACATTAGCCATTCGGC
64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGC
64674594 TTTACCACATATACAT
129 TTTACCACATATACAT
* *
64674610 ATCTCATTCAAATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
64674675 CATTAGCCATTCGACTTTACCACATATACATATCTCATTCATATTTCGCACTAGCCATTCGGCTT
66 CATTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTT
64674740 TACCACATATACAT
131 TACCACATATACAT
* * *
64674754 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACACATTT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
* *
64674819 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCG
64 CACATTAGCCATTCGGCTTTACCACATATACATATCTCAT-T-CATATTTCACACTAGCCATTCG
64674884 GCTTTACCACATATACAT
127 GCTTTACCACATATACAT
* *
64674902 ATCTCATACATATTTCACATTAGCCATTCGGCTTTA-CACATATACATATTTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
64674966 CATTAGCCATTCAGCTTTACCACATATACATAT
66 CATTAGCCATTCGGCTTTACCACATATACATAT
64674999 ATATTTATCT
Statistics
Matches: 496, Mismatches: 30, Indels: 14
0.92 0.06 0.03
Matches are distributed among these distances:
142 47 0.09
143 2 0.00
144 137 0.28
145 98 0.20
146 169 0.34
147 1 0.00
148 42 0.08
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (144 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCTT
TACCACATATACAT
Found at i:64686422 original size:50 final size:50
Alignment explanation
Indices: 64686360--64686530 Score: 194
Period size: 50 Copynumber: 3.5 Consensus size: 50
64686350 GATACCATGT
* *
64686360 CCCAGACATGGTCTTGCACTAGCTCTCACATATCTGTGCCGATGGCAGGC
1 CCCAGACATGGTCTTACACTAGATCTCACATATCTGTGCCGATGGCAGGC
* *
64686410 CCCAGACATGGTCTTACACTAGATCTCACATATCTGTGCCGATGGTAGGT
1 CCCAGACATGGTCTTACACTAGATCTCACATATCTGTGCCGATGGCAGGC
* * * *
64686460 CTCAGACATTGTCTTACACT-GA---CACATCTC-GTAGCCGAT-GCATGC
1 CCCAGACATGGTCTTACACTAGATCTCACATATCTGT-GCCGATGGCAGGC
* *
64686505 TCCAGACAT-GTCTTACACTAGCTCTC
1 CCCAGACATGGTCTTACACTAGATCTC
64686531 GTCTCAATGC
Statistics
Matches: 103, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
44 10 0.10
45 13 0.13
46 13 0.13
48 1 0.01
49 2 0.02
50 64 0.62
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (50 bp):
CCCAGACATGGTCTTACACTAGATCTCACATATCTGTGCCGATGGCAGGC
Found at i:64689711 original size:68 final size:70
Alignment explanation
Indices: 64689639--64689836 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
64689629 ACACCCTGTA
* * * *
64689639 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAAAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAAAGAGCTACGTGAAAG
64689701 ATAAAT
65 ATAAAT
* *
64689707 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAAAGAGCTACGTGAAAG
64689772 ATAAAT
65 ATAAAT
* *
64689778 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAAAGAGCTACG
64689837 AGACAAATCG
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 1 0.01
71 92 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAAAGAGCTACGTGAAAGA
TAAAT
Found at i:64689750 original size:41 final size:41
Alignment explanation
Indices: 64689705--64689822 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
64689695 TGAAAGATAA
64689705 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
64689746 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64689776 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
64689817 ATGTAG
1 ATGTAG
64689823 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:64689762 original size:71 final size:71
Alignment explanation
Indices: 64689673--64689836 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
64689663 GAGATGTATC
*
64689673 CCATGTAGACAAAAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64689738 AGGACA
66 AGGACA
64689744 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
64689809 AGGACA
66 AGGACA
64689815 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
64689837 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:64697179 original size:40 final size:40
Alignment explanation
Indices: 64697096--64697248 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
64697086 TCGAATGATG
* *
64697096 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
64697136 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
64697176 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
64697217 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
64697249 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:64705162 original size:40 final size:40
Alignment explanation
Indices: 64705079--64705231 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 40
64705069 TCGAATGATG
* *
64705079 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
64705119 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
64705159 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* * *
64705200 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
64705232 CGCTATATCC
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.02
40 81 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:64710125 original size:40 final size:40
Alignment explanation
Indices: 64710042--64710187 Score: 138
Period size: 40 Copynumber: 3.6 Consensus size: 40
64710032 TCGAATGATG
* *
64710042 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACCAAA
* **
64710082 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTGACCAAA
* **
64710122 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCT-ATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACCA-AA
* *
64710163 -CCGGGCTATGTCCCGAAGGCTTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64710188 AGTGAGTCGC
Statistics
Matches: 88, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 1 0.01
40 76 0.86
41 11 0.12
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACCAAA
Found at i:64713009 original size:27 final size:27
Alignment explanation
Indices: 64712979--64713040 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
64712969 GGGCAAAATG
64712979 GTAATTTTACCCCACAAGGGTATTTCA
1 GTAATTTTACCCCACAAGGGTATTTCA
* * *
64713006 GTAATTTTACCCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATTTCA
64713033 GTAATTTT
1 GTAATTTT
64713041 TCAAACCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
GTAATTTTACCCCACAAGGGTATTTCA
Found at i:64713053 original size:27 final size:27
Alignment explanation
Indices: 64713020--64713099 Score: 124
Period size: 27 Copynumber: 3.0 Consensus size: 27
64713010 TTTTACCCTA
* *
64713020 CAGGGGTATTTTAGTAATTTTTCAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
64713047 CATGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
64713074 TAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
64713100 TTGAGGGTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:64713054 original size:54 final size:54
Alignment explanation
Indices: 64712995--64713121 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
64712985 TTACCCCACA
** *
64712995 AGGGTATTTCAGTAATTTTACCCTAC-AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGTATTTCAGTAATTTTA-CAAACTAGGGGTATTTTAGTAATTTTACAAATCC
** * **
64713048 ATGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
*
64713103 AGGGTATTTCTGTAATTTT
1 AGGGTATTTCAGTAATTTT
64713122 GTAAATCGAG
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.07
54 56 0.92
55 1 0.02
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (54 bp):
AGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAATCC
Found at i:64713107 original size:27 final size:28
Alignment explanation
Indices: 64713021--64713133 Score: 117
Period size: 27 Copynumber: 4.1 Consensus size: 28
64713011 TTTACCCTAC
* * *
64713021 AGGGGTATTTTAGTAATTTTTCAAA-CC
1 AGGGGTATTTTGGTAATTTTACAAATCG
* *
64713048 ATGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGGTATTTTGGTAATTTTACAAATCG
*
64713075 AGGGGTATTTTGGTAATTTTACAAATTG
1 AGGGGTATTTTGGTAATTTTACAAATCG
**
64713103 A-GGGTATTTCT-GTAATTTTGTAAATCG
1 AGGGGTATTT-TGGTAATTTTACAAATCG
64713130 AGGG
1 AGGG
64713134 TAAAATAGTA
Statistics
Matches: 73, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
27 69 0.95
28 4 0.05
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTTTACAAATCG
Found at i:64713134 original size:27 final size:27
Alignment explanation
Indices: 64713114--64713432 Score: 374
Period size: 27 Copynumber: 11.8 Consensus size: 27
64713104 GGGTATTTCT
*
64713114 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
64713141 GTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
64713168 GTAATTCTATAAATCGACGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
64713194 GATAATTTTGTAAATCGAGGGTAAAACA
1 G-TAATTTTGTAAATCGAGGGTAAAACA
* * *
64713222 GTAATTCTGTAAATCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
*
64713249 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
64713276 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
64713303 GTAATTTTATAAATCGAGTGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAACA
* * *
64713330 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACA
64713357 GTAATTTTGTAAATCGAGGGTAAAAC-
1 GTAATTTTGTAAATCGAGGGTAAAACA
* *
64713383 GATAATTATGTAAATCGGGGGTAAAAC-
1 G-TAATTTTGTAAATCGAGGGTAAAACA
* *
64713410 GATAATTCTGTAAATCGGGGGTA
1 G-TAATTTTGTAAATCGAGGGTA
64713433 CTTTGGTAAT
Statistics
Matches: 254, Mismatches: 35, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 251 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAACA
Found at i:64713443 original size:54 final size:54
Alignment explanation
Indices: 64713114--64713432 Score: 433
Period size: 54 Copynumber: 5.9 Consensus size: 54
64713104 GGGTATTTCT
* ** * * * * *
64713114 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGAGAAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * *
64713168 GTAATTCTATAAATCGACGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
64713222 GTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* *
64713276 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGTGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
*
64713330 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAAC-
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
64713383 GATAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTA
1 G-TAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
64713433 CTTTGGTAAT
Statistics
Matches: 237, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 1 0.00
54 236 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:64713459 original size:27 final size:27
Alignment explanation
Indices: 64713438--64713527 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
64713428 GGGTACTTTG
*
64713438 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
64713465 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
64713492 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
64713519 GTAATTTTA
1 GTAATTTTA
64713528 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:64713479 original size:54 final size:54
Alignment explanation
Indices: 64713421--64713527 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
64713411 ATAATTCTGT
* * *
64713421 AAATCGGGGGTACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCAGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCAGTAATTTTAC
* * *
64713475 AAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCGGTAATTTTA
1 AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTA
64713528 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 6 0.13
54 39 0.87
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
AAATCGAGGGTATTTCAGTAATTTTACAAACGAAGGGTATTTCAGTAATTTTAC
Found at i:64713541 original size:27 final size:27
Alignment explanation
Indices: 64713438--64713542 Score: 90
Period size: 27 Copynumber: 3.9 Consensus size: 27
64713428 GGGTACTTTG
* *
64713438 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
64713465 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
64713492 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
64713519 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
64713543 CTAAACATGG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 55 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:64722420 original size:128 final size:128
Alignment explanation
Indices: 64722201--64722460 Score: 484
Period size: 128 Copynumber: 2.0 Consensus size: 128
64722191 GCAGTAGTAC
*
64722201 TTCACATAGTGAAGAAACGTTTTCCTTTGATGATATGTCTTATCAATAGGCATCAAACCAAAAGC
1 TTCACATAGTGAAGAAACATTTTCCTTTGATGATATGTCTTATCAATAGGCATCAAACCAAAAGC
64722266 TAAATAGTTAGCAATATCAGCAAACCAAGGGGTATTATGGACATGATTTACCTTCAGTATGTG
66 TAAATAGTTAGCAATATCAGCAAACCAAGGGGTATTATGGACATGATTTACCTTCAGTATGTG
* *
64722329 TTCACATCGTGAAGGAACATTTTCCTTTGATGATATGTCTTATCAATAGGCATCAAACCAAAAGC
1 TTCACATAGTGAAGAAACATTTTCCTTTGATGATATGTCTTATCAATAGGCATCAAACCAAAAGC
*
64722394 TAAATAGTTAGCAATATTAGCAAACCAAGGGGTATTATGGACATGATTTACCTTCAGTATGTG
66 TAAATAGTTAGCAATATCAGCAAACCAAGGGGTATTATGGACATGATTTACCTTCAGTATGTG
64722457 TTCA
1 TTCA
64722461 TCTGGAAATG
Statistics
Matches: 128, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
128 128 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.31
Consensus pattern (128 bp):
TTCACATAGTGAAGAAACATTTTCCTTTGATGATATGTCTTATCAATAGGCATCAAACCAAAAGC
TAAATAGTTAGCAATATCAGCAAACCAAGGGGTATTATGGACATGATTTACCTTCAGTATGTG
Found at i:64727071 original size:40 final size:40
Alignment explanation
Indices: 64726994--64727072 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
64726984 AAGTGCCATA
** **
64726994 TATATAGCCGAAGCTATTCCGATTTGCACACTGAGTGCTT
1 TATATAGCCGAAGCTATTCCGAAATGCACACAAAGTGCTT
*
64727034 TATATAGCTGAAGCTA-TCTCGAAATGCACACAAAGTGCT
1 TATATAGCCGAAGCTATTC-CGAAATGCACACAAAGTGCT
64727073 ATACTCAGTC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
39 2 0.06
40 31 0.94
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (40 bp):
TATATAGCCGAAGCTATTCCGAAATGCACACAAAGTGCTT
Found at i:64736761 original size:40 final size:43
Alignment explanation
Indices: 64736666--64736765 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 43
64736656 AGTGCCTTTC
*
64736666 ATAGCCGAAGCTATCTCAACTTCGCACACTAAGTGCCATATAT
1 ATAGCCGAAGCTATCTCAACTTCGCACACTAAGTGACATATAT
* * * *
64736709 ATATCCGAAGCTA-CTCCGA-TTCGCACACTGAGT-AC-TTTAT
1 ATAGCCGAAGCTATCT-CAACTTCGCACACTAAGTGACATATAT
64736749 ATAGCCGAAGCTATCTC
1 ATAGCCGAAGCTATCTC
64736766 GAAATGCACA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
40 17 0.35
41 3 0.06
42 15 0.31
43 14 0.29
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (43 bp):
ATAGCCGAAGCTATCTCAACTTCGCACACTAAGTGACATATAT
Found at i:64737259 original size:29 final size:29
Alignment explanation
Indices: 64737195--64737260 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
64737185 CTTTCATTTA
* *
64737195 TTTCACAATTTAACGCCTCAATTTACACT
1 TTTCTCAATTTAACGCCTCAATATACACT
* * *
64737224 TTTCTCAATTTAATGCCT-AATATGCATT
1 TTTCTCAATTTAACGCCTCAATATACACT
64737252 TTTACTCAA
1 TTT-CTCAA
64737261 AATCACTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (29 bp):
TTTCTCAATTTAACGCCTCAATATACACT
Found at i:64739525 original size:37 final size:37
Alignment explanation
Indices: 64739484--64739557 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
64739474 GTCAATCGAC
* * * *
64739484 ATATTTATGTTATATCTTTTAATGGCAAATATGTAGT
1 ATATTTATGTTATACCGTTTAATGGAAAATATATAGT
64739521 ATATTTATGTTATACCGTTTAATGGAAAATATATAGT
1 ATATTTATGTTATACCGTTTAATGGAAAATATATAGT
64739558 CTTTCTTGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.35, C:0.05, G:0.14, T:0.46
Consensus pattern (37 bp):
ATATTTATGTTATACCGTTTAATGGAAAATATATAGT
Found at i:64743359 original size:51 final size:51
Alignment explanation
Indices: 64743302--64743543 Score: 433
Period size: 51 Copynumber: 4.9 Consensus size: 51
64743292 GTATGAGATA
64743302 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
64743353 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
*
64743404 TATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAA--G--TG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
64743451 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
64743500 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
64743544 TATATGTGTG
Statistics
Matches: 185, Mismatches: 2, Indels: 10
0.94 0.01 0.05
Matches are distributed among these distances:
47 45 0.24
49 46 0.25
51 94 0.51
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (51 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATG
Found at i:64743497 original size:98 final size:98
Alignment explanation
Indices: 64743300--64743543 Score: 429
Period size: 98 Copynumber: 2.5 Consensus size: 98
64743290 ATGTATGAGA
64743300 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGAT
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G-ATGTATATATGTGAT
64743365 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
64743400 TATGTATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAA-G-TGTATATATGTGAT
1 TA--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGATGTATATATGTGAT
64743463 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
64743498 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
64743544 TATATGTGTG
Statistics
Matches: 140, Mismatches: 2, Indels: 8
0.93 0.01 0.05
Matches are distributed among these distances:
96 43 0.31
98 51 0.36
100 3 0.02
102 43 0.31
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (98 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGATGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:64743599 original size:96 final size:99
Alignment explanation
Indices: 64743299--64743550 Score: 343
Period size: 96 Copynumber: 2.6 Consensus size: 99
64743289 CATGTATGAG
*
64743299 ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGA
1 ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATATATGT-A
* * *
64743364 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
65 TAAGGCCTAATAGCCGAAGGGATGAATGTGAAA--GT
* *
64743401 ATGTATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAG----TGTATATATGTGA
1 ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATATATGT-A
* * *
64743462 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
65 TAAGGCCTAATAGCCGAAGGGATGAATGTGAAAGT
*
64743497 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TATATGT
1 ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGT
64743551 GTGATGTGTA
Statistics
Matches: 141, Mismatches: 5, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
96 46 0.33
98 46 0.33
99 3 0.02
102 46 0.33
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (99 bp):
ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATATATGTAT
AAGGCCTAATAGCCGAAGGGATGAATGTGAAAGT
Found at i:64743613 original size:48 final size:48
Alignment explanation
Indices: 64743557--64743686 Score: 197
Period size: 48 Copynumber: 2.7 Consensus size: 48
64743547 ATGTGTGATG
*
64743557 TGTATATGTGGTAAAGCCGAAGGGCTAATGTGAAACATATATAAGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
* * * **
64743605 TGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
*
64743653 TGTATATGTGGTACAGCCGAATGGCTAATGTGAA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
64743687 TGTTGTAATA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 74 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
Found at i:64743780 original size:37 final size:37
Alignment explanation
Indices: 64743726--64743816 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
64743716 AACTTGGAAA
* *
64743726 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACATGTGGAGAT
64743764 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
*
64743801 TATGTTCGGGTAAGAC
1 TATGTCCGGGTAAGAC
64743817 TTCGTAATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACATGTGGAGAT
Found at i:64750077 original size:12 final size:12
Alignment explanation
Indices: 64750062--64750086 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
64750052 AATATTTTTA
64750062 TATACATATTAT
1 TATACATATTAT
64750074 TATACATATTAT
1 TATACATATTAT
64750086 T
1 T
64750087 CTCATTGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TATACATATTAT
Found at i:64750259 original size:2 final size:2
Alignment explanation
Indices: 64750247--64750285 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
64750237 TCTTGTTTAA
*
64750247 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64750286 TACTTGTTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:64761144 original size:40 final size:40
Alignment explanation
Indices: 64761099--64761329 Score: 313
Period size: 40 Copynumber: 5.8 Consensus size: 40
64761089 ATAACCACAA
* *
64761099 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAACAACTC
* * *
64761139 GCACAAATGCCTTCGGGTCTTAGCCC-GATATAACCACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAACAACTC
* * *
64761178 GCACAATTGCCTTCGGGTCTTAACCCGGATATAACCACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAACAACTC
*
64761218 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAACAACTC
* *
64761258 GCACAAATGCCTTCGGGTCTTAGCCCGGGTATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAA-CAACTC
* * *
64761298 GCATAAATGCCTTCGGGGCTTAGCCCGGGTAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTAT
64761330 CATTCAAATG
Statistics
Matches: 175, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 34 0.19
40 140 0.80
41 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGGTATAACAACTC
Found at i:64761175 original size:79 final size:78
Alignment explanation
Indices: 64761079--64761324 Score: 330
Period size: 79 Copynumber: 3.1 Consensus size: 78
64761069 TCTTCGGAAT
* ** *
64761079 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACA
1 TTAGCCCGATATAACCACTCGCACAATTGCCTTCGGGTCTTAACCCGGGTATAAC-ACTCGCACA
64761144 AATGCCTTCGGGTC
65 AATGCCTTCGGGTC
*
64761158 TTAGCCCGATATAACCACTCGCACAATTGCCTTCGGGTCTTAACCCGGATATAACCACTCGCACA
1 TTAGCCCGATATAACCACTCGCACAATTGCCTTCGGGTCTTAACCCGGGTATAA-CACTCGCACA
*
64761223 ATTGCCTTCGGGTC
65 AATGCCTTCGGGTC
* * * * * * *
64761237 TTAACCCGGGTATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGGTATAATCACTAGCAT
1 TTAGCCC-GATATAACCACTCGCACAATTGCCTTCGGGTCTTAACCCGGGTATAA-CACTCGCAC
*
64761302 AAATGCCTTCGGGGC
64 AAATGCCTTCGGGTC
64761317 TTAGCCCG
1 TTAGCCCG
64761325 GGTATCATTC
Statistics
Matches: 147, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
79 78 0.53
80 69 0.47
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (78 bp):
TTAGCCCGATATAACCACTCGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACACTCGCACAA
ATGCCTTCGGGTC
Found at i:64769323 original size:40 final size:39
Alignment explanation
Indices: 64769262--64769502 Score: 306
Period size: 40 Copynumber: 6.1 Consensus size: 39
64769252 CGGAATTTAG
**
64769262 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CACTCGCACAATTGCCTTCGGGTCTTAAC
* * * *
64769302 CCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTCGCACAATTGCCTTCGGGTCTTAAC
64769342 CCGGATATAACACTCGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACACTCGCACAATTGCCTTCGGGTCTTAAC
*
64769381 CCGGATATAACCACTCGCACAATTGCCTTCGAGTCTTAAC
1 CCGGATATAA-CACTCGCACAATTGCCTTCGGGTCTTAAC
* * *
64769421 CCGGGTATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTCGCACAATTGCCTTCGGGTCTTAAC
* * *
64769461 CCGGATATAATCACTAGCATAA-TGCCTTCGGG-CTTAGC
1 CCGGATATAA-CACTCGCACAATTGCCTTCGGGTCTTAAC
64769499 CCGG
1 CCGG
64769503 GTATCATTCA
Statistics
Matches: 179, Mismatches: 18, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 10 0.06
39 48 0.27
40 120 0.67
41 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (39 bp):
CCGGATATAACACTCGCACAATTGCCTTCGGGTCTTAAC
Found at i:64769361 original size:79 final size:78
Alignment explanation
Indices: 64769258--64769502 Score: 316
Period size: 79 Copynumber: 3.1 Consensus size: 78
64769248 TCTTCGGAAT
** * *
64769258 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATATAA-CACTCGCACAATTGCCTTCGGGTCTTAACCCGGATATAAC-ACTCGCAC
64769322 AAATGCCTTCGGGTC
64 AAATGCCTTCGGGTC
64769337 TTAGCCCGGATATAACACTCGCACAATTGCCTTCGGGTCTTAACCCGGATATAACCACTCGCACA
1 TTAGCCCGGATATAACACTCGCACAATTGCCTTCGGGTCTTAACCCGGATATAA-CACTCGCACA
* *
64769402 ATTGCCTTCGAGTC
65 AATGCCTTCGGGTC
* * * * *
64769416 TTAACCCGGGTATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCA-
1 TTAGCCCGGATATAAC-ACTCGCACAATTGCCTTCGGGTCTTAACCCGGATATAA-CACTCGCAC
*
64769480 TAATGCCTTCGGG-C
64 AAATGCCTTCGGGTC
64769494 TTAGCCCGG
1 TTAGCCCGG
64769503 GTATCATTCA
Statistics
Matches: 147, Mismatches: 16, Indels: 7
0.86 0.09 0.04
Matches are distributed among these distances:
78 9 0.06
79 84 0.57
80 54 0.37
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (78 bp):
TTAGCCCGGATATAACACTCGCACAATTGCCTTCGGGTCTTAACCCGGATATAACACTCGCACAA
ATGCCTTCGGGTC
Found at i:64769487 original size:119 final size:118
Alignment explanation
Indices: 64769262--64769502 Score: 394
Period size: 119 Copynumber: 2.0 Consensus size: 118
64769252 CGGAATTTAG
* *
64769262 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
1 CCGGATATAACCACAAGCACAATTGCCTTCGAGTCTTAACCCGGGTATAACAACTCGCACAAATG
*
64769327 CCTTCGGGTCTTAGCCCGGATATAACACTCGCACAATTGCCTTCGGGTCTTAAC
66 CCTTCGGGTCTTAGCCCGGATATAACACTAGCACAATTGCCTTCGGG-CTTAAC
**
64769381 CCGGATATAACCACTCGCACAATTGCCTTCGAGTCTTAACCCGGGTATAACAACTCGCACAAATG
1 CCGGATATAACCACAAGCACAATTGCCTTCGAGTCTTAACCCGGGTATAACAACTCGCACAAATG
* *
64769446 CCTTCGGGTCTTAGCCCGGATATAATCACTAGCATAA-TGCCTTCGGGCTTAGC
66 CCTTCGGGTCTTAGCCCGGATATAA-CACTAGCACAATTGCCTTCGGGCTTAAC
64769499 CCGG
1 CCGG
64769503 GTATCATTCA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
118 9 0.08
119 96 0.84
120 9 0.08
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (118 bp):
CCGGATATAACCACAAGCACAATTGCCTTCGAGTCTTAACCCGGGTATAACAACTCGCACAAATG
CCTTCGGGTCTTAGCCCGGATATAACACTAGCACAATTGCCTTCGGGCTTAAC
Found at i:64779353 original size:13 final size:13
Alignment explanation
Indices: 64779322--64779346 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64779312 ACCTGGCAAT
64779322 CATGTCACACGGC
1 CATGTCACACGGC
64779335 CATGTCACACGG
1 CATGTCACACGG
64779347 GCGTGTCCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (13 bp):
CATGTCACACGGC
Found at i:64781109 original size:26 final size:26
Alignment explanation
Indices: 64781073--64781130 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
64781063 CTTTAAGATA
64781073 GAAATTGAAAAGTTTTAAATTTGAAC
1 GAAATTGAAAAGTTTTAAATTTGAAC
64781099 GAAATTGAAAAGTTTTAAATTTGAAC
1 GAAATTGAAAAGTTTTAAATTTGAAC
*
64781125 AAAATT
1 GAAATT
64781131 TTATAGCTCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.48, C:0.03, G:0.14, T:0.34
Consensus pattern (26 bp):
GAAATTGAAAAGTTTTAAATTTGAAC
Found at i:64785917 original size:37 final size:37
Alignment explanation
Indices: 64785867--64785983 Score: 207
Period size: 37 Copynumber: 3.2 Consensus size: 37
64785857 ACGAAATCTT
* *
64785867 ACCCGGACATAATCTCCACACGTAGTCATCGGGTCTG
1 ACCCGGTCATAATCTCCACACGTAGTCATCGGGTCTC
*
64785904 ACCCGGTCATAATCTCCACACGTAGTCATCGGGTCTT
1 ACCCGGTCATAATCTCCACACGTAGTCATCGGGTCTC
64785941 ACCCGGTCATAATCTCCACACGTAGTCATCGGGTCTC
1 ACCCGGTCATAATCTCCACACGTAGTCATCGGGTCTC
64785978 ACCCGG
1 ACCCGG
64785984 AACATATTCC
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.22, C:0.34, G:0.21, T:0.23
Consensus pattern (37 bp):
ACCCGGTCATAATCTCCACACGTAGTCATCGGGTCTC
Found at i:64786140 original size:49 final size:49
Alignment explanation
Indices: 64786085--64786304 Score: 345
Period size: 49 Copynumber: 4.5 Consensus size: 49
64786075 TTTTACATTA
64786085 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
*
64786134 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* *
64786183 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* * * *
64786232 GCCATTAGGCCTTATCAC--ACATATGCACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
* *
64786279 GCCATTCGGCCTTATCACACATATAT
1 GCCATTAGGCCTTATCACATATATAT
64786305 GTATATCATA
Statistics
Matches: 161, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 42 0.26
49 119 0.74
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
Found at i:64789376 original size:39 final size:40
Alignment explanation
Indices: 64789274--64789452 Score: 184
Period size: 40 Copynumber: 4.5 Consensus size: 40
64789264 TCGAATGGTG
* * *
64789274 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
64789315 TCCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
64789355 ACCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
64789394 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
64789435 -CCGGGCTATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
64789453 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
39 33 0.29
40 53 0.46
41 28 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:64789409 original size:79 final size:81
Alignment explanation
Indices: 64789275--64789452 Score: 209
Period size: 79 Copynumber: 2.2 Consensus size: 81
64789265 CGAATGGTGT
* * *
64789275 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
64789340 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * * * *
64789356 CCGGGTTAAGT-CCGAAGGCATTCGTGC-GAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAAT
* * * *
64789418 TGTGCGAATCACTATAA
65 TGTGCGAGTTACCAAAA
*
64789435 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
64789453 ACAATCGAGC
Statistics
Matches: 81, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
78 1 0.01
79 50 0.62
80 20 0.25
81 10 0.12
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:64789473 original size:40 final size:40
Alignment explanation
Indices: 64789395--64789478 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
64789385 GTTATTAAAT
* * *
64789395 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
64789435 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
64789475 CCGG
1 CCGG
64789479 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:64797460 original size:40 final size:40
Alignment explanation
Indices: 64797364--64797542 Score: 189
Period size: 40 Copynumber: 4.5 Consensus size: 40
64797354 CGAATGGTGT
* * * *
64797364 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* *
64797405 CCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * *
64797445 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * *
64797485 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
64797525 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
64797543 ACAATCGAGC
Statistics
Matches: 114, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
40 89 0.78
41 25 0.22
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:64797503 original size:80 final size:80
Alignment explanation
Indices: 64797364--64797556 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 80
64797354 CGAATGGTGT
* * * *
64797364 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATT
* *
64797429 GTGCGAGTTACCAAAA
65 GTGCGAATCACCAAAA
* * * *
64797445 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* *
64797509 GTGCGAATCACTATAA
65 GTGCGAATCACCAAAA
* * * *
64797525 CCGGGCTATGTCCCGAAGACAATCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGT
64797557 CGCTATATCC
Statistics
Matches: 94, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 68 0.72
81 25 0.27
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAATCACCAAAA
Found at i:64797563 original size:40 final size:40
Alignment explanation
Indices: 64797485--64797568 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
64797475 GTTATTAAAT
* * *
64797485 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
64797525 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
64797565 CCGG
1 CCGG
64797569 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:64800369 original size:73 final size:73
Alignment explanation
Indices: 64800250--64800415 Score: 296
Period size: 73 Copynumber: 2.3 Consensus size: 73
64800240 AGCCAAATAA
* *
64800250 CAGAAAGCTCATGTGAGCTTGTAATGGGAAGCTTATTCGGGCTTAATAACAGGAAGCTCATAAGA
1 CAGAAAGCTCATGTGAGCTTGTAATGGGAAGCTTATCCGAGCTTAATAACAGGAAGCTCATAAGA
*
64800315 GCTTTAAT
66 GCTTAAAT
*
64800323 CAGAAAGCTCATGTGAGTTTGTAATGGGAAGCTTATCCGAGCTTAATAACAGGAAGCTCATAAGA
1 CAGAAAGCTCATGTGAGCTTGTAATGGGAAGCTTATCCGAGCTTAATAACAGGAAGCTCATAAGA
64800388 GCTTAAAT
66 GCTTAAAT
64800396 CAGAAAGCTCATGTGAGCTT
1 CAGAAAGCTCATGTGAGCTT
64800416 AACGGGTAAC
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 88 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.27
Consensus pattern (73 bp):
CAGAAAGCTCATGTGAGCTTGTAATGGGAAGCTTATCCGAGCTTAATAACAGGAAGCTCATAAGA
GCTTAAAT
Found at i:64800413 original size:24 final size:24
Alignment explanation
Indices: 64800254--64800417 Score: 91
Period size: 24 Copynumber: 6.8 Consensus size: 24
64800244 AAATAACAGA
* *
64800254 AAGCTCATGTGAGCTTGTAAT-GGG
1 AAGCTCATGTGAGCTT-AAATCAGG
* * *
64800278 AAGCTTAT-TCGGGCTTAATAACAGG
1 AAGCTCATGT-GAGCTTAA-ATCAGG
** * *
64800303 AAGCTCATAAGAGCTTTAATCAGA
1 AAGCTCATGTGAGCTTAAATCAGG
* * *
64800327 AAGCTCATGTGAGTTTGTAAT-GGG
1 AAGCTCATGTGAGCTT-AAATCAGG
* ** *
64800351 AAGCTTATCCGAGCTTAATAACAGG
1 AAGCTCATGTGAGCTTAA-ATCAGG
** *
64800376 AAGCTCATAAGAGCTTAAATCAGA
1 AAGCTCATGTGAGCTTAAATCAGG
64800400 AAGCTCATGTGAGCTTAA
1 AAGCTCATGTGAGCTTAA
64800418 CGGGTAACTC
Statistics
Matches: 103, Mismatches: 30, Indels: 14
0.70 0.20 0.10
Matches are distributed among these distances:
23 3 0.03
24 64 0.62
25 36 0.35
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (24 bp):
AAGCTCATGTGAGCTTAAATCAGG
Found at i:64800917 original size:30 final size:31
Alignment explanation
Indices: 64800883--64800945 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
64800873 AATGTTCGTG
64800883 TTTATA-GGTACTAAGCCGATACTTTTTGTT
1 TTTATAGGGTACTAAGCCGATACTTTTTGTT
*
64800913 TTTATAGGGTATTAAGCCGATACTTTTTGTT
1 TTTATAGGGTACTAAGCCGATACTTTTTGTT
64800944 TT
1 TT
64800946 CCTCGATCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 6 0.19
31 25 0.81
ACGTcount: A:0.22, C:0.11, G:0.17, T:0.49
Consensus pattern (31 bp):
TTTATAGGGTACTAAGCCGATACTTTTTGTT
Found at i:64801707 original size:17 final size:17
Alignment explanation
Indices: 64801677--64801710 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
64801667 GACCTCAATT
64801677 TTTGAATTTCATAGCTA
1 TTTGAATTTCATAGCTA
64801694 TTTGATATTT-ATAGCTA
1 TTTGA-ATTTCATAGCTA
64801711 CTAAAACTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.29, C:0.09, G:0.12, T:0.50
Consensus pattern (17 bp):
TTTGAATTTCATAGCTA
Found at i:64801874 original size:37 final size:37
Alignment explanation
Indices: 64801831--64801904 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
64801821 AGATCATGAA
64801831 ATAATATTAAAATAATCTTTCTTAAGGAATCAAATTT
1 ATAATATTAAAATAATCTTTCTTAAGGAATCAAATTT
* *
64801868 ATAATATTAAAATAATCTTTCTTAAGGACTCGAATTT
1 ATAATATTAAAATAATCTTTCTTAAGGAATCAAATTT
64801905 GTAGTCCCGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (37 bp):
ATAATATTAAAATAATCTTTCTTAAGGAATCAAATTT
Found at i:64805105 original size:49 final size:49
Alignment explanation
Indices: 64804925--64805118 Score: 212
Period size: 50 Copynumber: 3.9 Consensus size: 49
64804915 TCTATTGTGA
* * *
64804925 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGAAAACTG-T
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AGACTGTT
* * * * ** *
64804976 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACT-GT-T
* *
64805026 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGTT
*
64805075 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
64805119 TAACTTCGGC
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 3 0.02
49 41 0.34
50 42 0.35
51 34 0.28
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGTT
Found at i:64812324 original size:27 final size:27
Alignment explanation
Indices: 64812286--64812353 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
64812276 CGAAGGCATC
* * *
64812286 TCATATGCGGCACCGATTG-TGGGACTG
1 TCATAGGCGGCACCAATAGTTGGG-CTG
64812313 TCATAGGCGGCACCAATAGTTGGGCTG
1 TCATAGGCGGCACCAATAGTTGGGCTG
* *
64812340 CCAGAGGCGGCACC
1 TCATAGGCGGCACC
64812354 TTGTACCGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 31 0.89
28 4 0.11
ACGTcount: A:0.21, C:0.26, G:0.34, T:0.19
Consensus pattern (27 bp):
TCATAGGCGGCACCAATAGTTGGGCTG
Found at i:64812512 original size:5 final size:6
Alignment explanation
Indices: 64812497--64812521 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
64812487 TGAAGGAAGA
64812497 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
64812522 GAAGGAGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Done.