Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 212 of 425
Found at i:64813443 original size:156 final size:151
Alignment explanation
Indices: 64813274--64813596 Score: 495
Period size: 156 Copynumber: 2.1 Consensus size: 151
64813264 GTATATTTTA
* *
64813274 AAAAATAAAATAAATAATAAAAACAAAGGGCCAAATTCAGAGTTTTTTACTAAATTAATATAAAA
1 AAAAATAAAATAAATAATAAAAACAAAGGGCCAAAATCAAAGTTTTTTACTAAATTAATATAAAA
** *
64813339 AACACTAAAATAATACATTTGAACCATTATGTACTAAAATAATATTAAAAA-AATAAATTACGAA
66 AACACTAAAATAATACATTAAAAACATTATGTACTAAAATAATA-TAAAAATAAT--A-TA--AA
*
64813403 AATAGTATATTTTAAAAAATAAAATCT
125 AATAGTATATTTTAAAAAATAAAATCC
64813430 AAAAATAAAATAAATAATAAAAACAAAGGGCCAAAATCAAAGTTTTTTACTAAATTAATATAAAA
1 AAAAATAAAATAAATAATAAAAACAAAGGGCCAAAATCAAAGTTTTTTACTAAATTAATATAAAA
* * *
64813495 AACACTGAAATAATACATTAAAAATATTATGTACTAAAATAATATAAGAATAATATAAAAATAGT
66 AACACTAAAATAATACATTAAAAACATTATGTACTAAAATAATATAAAAATAATATAAAAATAGT
64813560 ATATTTTAAAAAATAAAATCC
131 ATATTTTAAAAAATAAAATCC
*
64813581 GAAAATAAAATAAATA
1 AAAAATAAAATAAATA
64813597 CCAAAATATA
Statistics
Matches: 156, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
151 43 0.28
153 2 0.01
154 1 0.01
155 5 0.03
156 105 0.67
ACGTcount: A:0.59, C:0.07, G:0.06, T:0.28
Consensus pattern (151 bp):
AAAAATAAAATAAATAATAAAAACAAAGGGCCAAAATCAAAGTTTTTTACTAAATTAATATAAAA
AACACTAAAATAATACATTAAAAACATTATGTACTAAAATAATATAAAAATAATATAAAAATAGT
ATATTTTAAAAAATAAAATCC
Found at i:64813684 original size:3 final size:3
Alignment explanation
Indices: 64813678--64813702 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
64813668 ATCATTTTAA
64813678 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
64813703 TTTGTATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:64828764 original size:14 final size:14
Alignment explanation
Indices: 64828747--64828780 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
64828737 TAGTATTCAT
*
64828747 AATATTTTATTAAA
1 AATATTTTAATAAA
64828761 AATATTTTAATAAA
1 AATATTTTAATAAA
*
64828775 CATATT
1 AATATT
64828781 ATTGTTTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
AATATTTTAATAAA
Found at i:64828989 original size:12 final size:12
Alignment explanation
Indices: 64828956--64828989 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
64828946 GTTTATTTCA
*
64828956 TTAAAAATAATT
1 TTAAAAATGATT
64828968 TTAAACAATGATT
1 TTAAA-AATGATT
64828981 TTAAAAATG
1 TTAAAAATG
64828990 GTCAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.53, C:0.03, G:0.06, T:0.38
Consensus pattern (12 bp):
TTAAAAATGATT
Found at i:64829685 original size:13 final size:13
Alignment explanation
Indices: 64829661--64829697 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
64829651 TAACCCTATA
64829661 TATAATTATGTTAT
1 TATAA-TATGTTAT
64829675 TATAATATGTTAT
1 TATAATATGTTAT
64829688 TATAATATGT
1 TATAATATGT
64829698 ACTAATTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 18 0.78
14 5 0.22
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
TATAATATGTTAT
Found at i:64832841 original size:21 final size:21
Alignment explanation
Indices: 64832817--64832856 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64832807 GAAGAGTCTA
* *
64832817 CACGGCTGTGTGAAAGAGGGG
1 CACGCCTGTGTCAAAGAGGGG
64832838 CACGCCTGTGTCAAAGAGG
1 CACGCCTGTGTCAAAGAGG
64832857 CACACGGCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.20, G:0.40, T:0.15
Consensus pattern (21 bp):
CACGCCTGTGTCAAAGAGGGG
Found at i:64832862 original size:21 final size:21
Alignment explanation
Indices: 64832816--64832862 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
64832806 TGAAGAGTCT
* * *
64832816 ACACGGCTGTGTGAAAGAGGG
1 ACACGCCTGTGTCAAAGAGGC
*
64832837 GCACGCCTGTGTCAAAGAGGC
1 ACACGCCTGTGTCAAAGAGGC
64832858 ACACG
1 ACACG
64832863 GCCATGTGAC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.23, G:0.36, T:0.13
Consensus pattern (21 bp):
ACACGCCTGTGTCAAAGAGGC
Found at i:64839925 original size:12 final size:13
Alignment explanation
Indices: 64839897--64839929 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
64839887 TGATTTCATG
64839897 AAAATTTCATTCA
1 AAAATTTCATTCA
64839910 AAAATTTCATTCA
1 AAAATTTCATTCA
64839923 AAAATTT
1 AAAATTT
64839930 TGATGTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
AAAATTTCATTCA
Found at i:64841045 original size:42 final size:42
Alignment explanation
Indices: 64840986--64841137 Score: 182
Period size: 42 Copynumber: 3.6 Consensus size: 42
64840976 ACTAAGATTA
64840986 CATGTAAGACCATATCTGGGATATGACATCGATATGAGACTT
1 CATGTAAGACCATATCTGGGATATGACATCGATATGAGACTT
* *
64841028 CATGTAAGATCATATCTGGGATATGACATCAATATGAGACTT
1 CATGTAAGACCATATCTGGGATATGACATCGATATGAGACTT
** * * *
64841070 TGTGTAAGACCATAGT-TGGGCTATTGGCATCGATATGGGA-TT
1 CATGTAAGACCATA-TCTGGGATA-TGACATCGATATGAGACTT
* *
64841112 ATATGTAAGACCATATTTGGGATATG
1 -CATGTAAGACCATATCTGGGATATG
64841138 GCATTGGTAT
Statistics
Matches: 95, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
42 62 0.65
43 33 0.35
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (42 bp):
CATGTAAGACCATATCTGGGATATGACATCGATATGAGACTT
Found at i:64843489 original size:21 final size:21
Alignment explanation
Indices: 64843465--64843508 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
64843455 AAGTTGTTTA
* *
64843465 TCTATCAAAAACTTTTCATTT
1 TCTACCAAAAACTTTTAATTT
* *
64843486 TCTACCATAAATTTTTAATTT
1 TCTACCAAAAACTTTTAATTT
64843507 TC
1 TC
64843509 AGCATATTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (21 bp):
TCTACCAAAAACTTTTAATTT
Found at i:64843835 original size:25 final size:25
Alignment explanation
Indices: 64843801--64843851 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
64843791 CATGGATGAG
64843801 TCACAAAAAAATCTACATACTTTTC
1 TCACAAAAAAATCTACATACTTTTC
64843826 TCACAAAAAAATCTACATACTTTTC
1 TCACAAAAAAATCTACATACTTTTC
64843851 T
1 T
64843852 TTAATGGCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (25 bp):
TCACAAAAAAATCTACATACTTTTC
Found at i:64844935 original size:13 final size:13
Alignment explanation
Indices: 64844919--64844944 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
64844909 GAAATGATTT
64844919 TTTGAAAATTTCG
1 TTTGAAAATTTCG
64844932 TTTGAAAATTTCG
1 TTTGAAAATTTCG
64844945 ACGTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
TTTGAAAATTTCG
Found at i:64852072 original size:30 final size:29
Alignment explanation
Indices: 64852011--64852074 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 29
64852001 TTATGATATG
64852011 TTATCTTGGATTTCTGTACCTTGAATATCT
1 TTATCTTGGATTTCTGTA-CTTGAATATCT
* *
64852041 TTATCTTGGATTCCTCTGT-CTTGTATTTCT
1 TTATCTTGGATT--TCTGTACTTGAATATCT
64852071 TTAT
1 TTAT
64852075 TCTAGTTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 25 0.83
32 5 0.17
ACGTcount: A:0.16, C:0.17, G:0.12, T:0.55
Consensus pattern (29 bp):
TTATCTTGGATTTCTGTACTTGAATATCT
Found at i:64858153 original size:28 final size:28
Alignment explanation
Indices: 64858107--64858223 Score: 153
Period size: 28 Copynumber: 4.2 Consensus size: 28
64858097 AATGCCATTG
* *
64858107 CATACTCGATGTCTCGCACACTAAGTGC
1 CATACTCAATATCTCGCACACTAAGTGC
* *
64858135 CATACTCAATATCTTGCACACTACGTGC
1 CATACTCAATATCTCGCACACTAAGTGC
* * * *
64858163 CATTCTCAATATTTCACAAACTAAGTGC
1 CATACTCAATATCTCGCACACTAAGTGC
*
64858191 CATACTCAATATCTCACACACTAAGTGC
1 CATACTCAATATCTCGCACACTAAGTGC
64858219 CATAC
1 CATAC
64858224 ATAGCCGAAG
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 76 1.00
ACGTcount: A:0.32, C:0.31, G:0.10, T:0.27
Consensus pattern (28 bp):
CATACTCAATATCTCGCACACTAAGTGC
Found at i:64858295 original size:40 final size:40
Alignment explanation
Indices: 64858207--64858307 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
64858197 CAATATCTCA
** * *
64858207 CACACTAAGTGCCATACATAGCCGAAGCTATCTCAGATCG
1 CACACTAAGTGCCATATTTAGCCGAAGCTATATCAAATCG
* * *
64858247 CACGCTAAGTGCCAAATTTAGCCGAAGCTATATCAAATTG
1 CACACTAAGTGCCATATTTAGCCGAAGCTATATCAAATCG
* *
64858287 TACACTAAGTCCCATATTTAG
1 CACACTAAGTGCCATATTTAG
64858308 ACGATATGTT
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (40 bp):
CACACTAAGTGCCATATTTAGCCGAAGCTATATCAAATCG
Found at i:64860164 original size:19 final size:18
Alignment explanation
Indices: 64860136--64860180 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
64860126 ATGAAATTTT
*
64860136 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGA-AA
*
64860155 AATTATTATTATTAGAAA
1 AATTATTATTATGAGAAA
64860173 ATATTATT
1 A-ATTATT
64860181 GTATGTATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 3 0.13
19 20 0.87
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (18 bp):
AATTATTATTATGAGAAA
Found at i:64861206 original size:5 final size:5
Alignment explanation
Indices: 64861196--64861281 Score: 57
Period size: 5 Copynumber: 16.2 Consensus size: 5
64861186 TCTTCTTCTA
* * * *
64861196 TTTTC TTTTC TTTTC TTTTC TCCTCTC TTCATC TACTTC CTTTC TTCTTC
1 TTTTC TTTTC TTTTC TTTTC T--TTTC TT-TTC T-TTTC TTTTC TT-TTC
**
64861246 TTCTTC -TTTC CCTTC TTTTC TTTTC TTTTC TTTTC T
1 TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC T
64861282 CTTCATCTAC
Statistics
Matches: 65, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
4 3 0.05
5 44 0.68
6 14 0.22
7 4 0.06
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.67
Consensus pattern (5 bp):
TTTTC
Found at i:64861295 original size:20 final size:20
Alignment explanation
Indices: 64861219--64861301 Score: 53
Period size: 20 Copynumber: 4.2 Consensus size: 20
64861209 TCTTTTCTCC
*
64861219 TCTCTTCATCTAC-TTCCTT
1 TCTCTTCATCTACTTTCCCT
* *
64861238 TCTTCTTCTTCTTCTTTCCCT
1 TC-TCTTCATCTACTTTCCCT
* * * **
64861259 TCTTTTC-TTTTCTTTTCTTT
1 TCTCTTCATCTAC-TTTCCCT
*
64861279 TCTCTTCATCTACTTTCTCT
1 TCTCTTCATCTACTTTCCCT
64861299 TCT
1 TCT
64861302 TCTTTTCCCC
Statistics
Matches: 49, Mismatches: 11, Indels: 7
0.73 0.16 0.10
Matches are distributed among these distances:
19 6 0.12
20 33 0.67
21 10 0.20
ACGTcount: A:0.05, C:0.33, G:0.00, T:0.63
Consensus pattern (20 bp):
TCTCTTCATCTACTTTCCCT
Found at i:64864824 original size:17 final size:19
Alignment explanation
Indices: 64864782--64864827 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
64864772 ATGAAATTTT
*
64864782 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
64864801 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
64864819 AA-TATTATT
1 AATTATTATT
64864828 GTATGTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 7 0.28
18 4 0.16
19 14 0.56
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:64865792 original size:16 final size:16
Alignment explanation
Indices: 64865771--64865810 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
64865761 GCCGAAATTA
64865771 CAAGGGTTCTCCATAG
1 CAAGGGTTCTCCATAG
64865787 CAAGGGTTCTCCATAG
1 CAAGGGTTCTCCATAG
*
64865803 CTAGGGTT
1 CAAGGGTT
64865811 TGTTTCAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.28
Consensus pattern (16 bp):
CAAGGGTTCTCCATAG
Found at i:64866689 original size:46 final size:46
Alignment explanation
Indices: 64866639--64866814 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
64866629 TGGTTGAGCA
64866639 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64866685 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
64866730 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
64866778 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64866815 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:64866795 original size:93 final size:93
Alignment explanation
Indices: 64866636--64866807 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
64866626 GGATGGTTGA
* *
64866636 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64866701 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
64866729 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
64866794 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
64866808 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64874339 original size:45 final size:46
Alignment explanation
Indices: 64874176--64874350 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
64874166 TGGTTGAGCA
*
64874176 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
64874222 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
64874267 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
64874315 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
64874351 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.33
46 29 0.26
47 29 0.26
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:64876210 original size:10 final size:11
Alignment explanation
Indices: 64876130--64876247 Score: 75
Period size: 10 Copynumber: 10.5 Consensus size: 11
64876120 GGATTCAGTT
64876130 TTTTCTTCTTC
1 TTTTCTTCTTC
64876141 TATTTTCTT-TTC
1 --TTTTCTTCTTC
*
64876153 TTTTCTCCTCTC
1 TTTTCTTCT-TC
* *
64876165 TTCATCTACTTC
1 TT-TTCTTCTTC
*
64876177 CTTTCTTC-T-
1 TTTTCTTCTTC
64876186 TTTTCTTTCCCTTC
1 TTTTC-TT--CTTC
64876200 TTTTCTT-TTC
1 TTTTCTTCTTC
64876210 TTTTCTTC-TC
1 TTTTCTTCTTC
* *
64876220 TCTTCTTCTAC
1 TTTTCTTCTTC
64876231 TTTCTCTTCTTC
1 TTT-TCTTCTTC
64876243 TTTTC
1 TTTTC
64876248 CCCCATAGCC
Statistics
Matches: 83, Mismatches: 11, Indels: 24
0.70 0.09 0.20
Matches are distributed among these distances:
9 4 0.05
10 28 0.34
11 10 0.12
12 21 0.25
13 15 0.18
14 5 0.06
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTTCTTCTTC
Found at i:64892308 original size:19 final size:19
Alignment explanation
Indices: 64892276--64892312 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
64892266 ACTTGGGTTG
*
64892276 AGAATTGGCCAAATGGGCC
1 AGAATGGGCCAAATGGGCC
*
64892295 AGAATGGGCTAAATGGGC
1 AGAATGGGCCAAATGGGC
64892313 TTGATGAGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.16, G:0.35, T:0.16
Consensus pattern (19 bp):
AGAATGGGCCAAATGGGCC
Found at i:64892422 original size:28 final size:29
Alignment explanation
Indices: 64892391--64892508 Score: 136
Period size: 28 Copynumber: 4.2 Consensus size: 29
64892381 GTGAGCATGA
* *
64892391 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
64892419 ATATGAATGA-GAATTGGGCCTAGTGGGCC
1 ATATGAAT-ATGAATTGGGCCTAGTGGGCC
* *
64892448 ATAAGAATATGAACTGGG-CTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
* * *
64892476 ATTTGAATAAG-ATTGGGCCTAGTTGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
64892504 ATATG
1 ATATG
64892509 CATGTATGTA
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
27 5 0.07
28 36 0.47
29 34 0.45
30 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAGTGGGCC
Found at i:64897177 original size:38 final size:40
Alignment explanation
Indices: 64897126--64897218 Score: 147
Period size: 38 Copynumber: 2.4 Consensus size: 40
64897116 TCAATGTCTC
64897126 GCACACTAAGTGCCATACATAGCCGAAGCTATCAT-AGA-T
1 GCACACTAAGTGCCATACATAGCCGAAGCTATC-TCAGATT
*
64897165 -CGCACTAAGTGCCATACATAGCCGAAGCTATCTCAGATT
1 GCACACTAAGTGCCATACATAGCCGAAGCTATCTCAGATT
64897204 GCACACTAAGTGCCA
1 GCACACTAAGTGCCA
64897219 AATTTAGGCG
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
37 1 0.02
38 34 0.69
39 1 0.02
40 13 0.27
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.20
Consensus pattern (40 bp):
GCACACTAAGTGCCATACATAGCCGAAGCTATCTCAGATT
Found at i:64899037 original size:24 final size:24
Alignment explanation
Indices: 64899005--64899067 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
64898995 AATCTCAAAT
64899005 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
64899029 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
64899053 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
64899068 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:64905171 original size:66 final size:65
Alignment explanation
Indices: 64905044--64905171 Score: 168
Period size: 66 Copynumber: 1.9 Consensus size: 65
64905034 TACTATGTGT
* * * *
64905044 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTGCATGCGTGGTTCCAAGTGAAG
1 ACACCATGTAGACAAGAGAGCTACGAGATAAATG-AGCTAGGTACATGCGTGGTACCAAGTGAAG
64905109 G
65 G
* *
64905110 ACACCATGTAGACAAGAGAGCTACGAGATAAACTG-GCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAGCTACGAGATAAA-TGAGCTAGGT-ACATGCGTGGTACCAAGTG
64905172 TTCACCATGT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
65 7 0.13
66 45 0.83
67 2 0.04
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.20
Consensus pattern (65 bp):
ACACCATGTAGACAAGAGAGCTACGAGATAAATGAGCTAGGTACATGCGTGGTACCAAGTGAAGG
Found at i:64906283 original size:2 final size:2
Alignment explanation
Indices: 64906276--64906306 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
64906266 TCATGACATG
64906276 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
64906307 GACTAGTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:64910011 original size:30 final size:29
Alignment explanation
Indices: 64909977--64910036 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
64909967 TCCTTAACTC
64909977 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTT-CCCCT
* * * *
64910007 AAACTTTTGCATAATTACACTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTCCCCT
64910036 A
1 A
64910037 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.37
Consensus pattern (29 bp):
AAACTTTGGAAAAATTACAATTTTCCCCT
Found at i:64914386 original size:16 final size:16
Alignment explanation
Indices: 64914365--64914397 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
64914355 GAGCTTCCGA
64914365 ACACTATAAAACAGGG
1 ACACTATAAAACAGGG
64914381 ACACTATAAAACAGGG
1 ACACTATAAAACAGGG
64914397 A
1 A
64914398 AAATAAAACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.18, G:0.18, T:0.12
Consensus pattern (16 bp):
ACACTATAAAACAGGG
Found at i:64914405 original size:14 final size:16
Alignment explanation
Indices: 64914365--64914406 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
64914355 GAGCTTCCGA
*
64914365 ACACTATAAAACAGGG
1 ACACAATAAAACAGGG
*
64914381 ACACTATAAAACAGGG
1 ACACAATAAAACAGGG
64914397 A-A-AATAAAAC
1 ACACAATAAAAC
64914407 GGAGTAAGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 7 0.28
15 1 0.04
16 17 0.68
ACGTcount: A:0.57, C:0.17, G:0.14, T:0.12
Consensus pattern (16 bp):
ACACAATAAAACAGGG
Found at i:64920127 original size:28 final size:27
Alignment explanation
Indices: 64920072--64920183 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
64920062 AGCATCGCTG
* * * *
64920072 CCAGAATAGATAA-TGTGACCGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
64920098 CCAGAAACAGATAATTGTGGCAGAGCCA
1 CCAG-AACAGATAATTGTGGCAGAGCCA
64920126 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
64920153 CCAGATCAAATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
64920180 CCAG
1 CCAG
64920184 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:64923179 original size:30 final size:30
Alignment explanation
Indices: 64923143--64923202 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
64923133 TTCCCGAGCC
*
64923143 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
64923173 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
64923203 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:64927681 original size:64 final size:64
Alignment explanation
Indices: 64927607--64927734 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
64927597 ATATCTCATT
*
64927607 ACGGAAGCATCTACTTACTTCTCATCCAATGACCTTGTCTTAATTGTGTTACCCTCATACTATG
1 ACGGAAGCATCTACTTACTTCTCATCCAATGACCTTGTCTTAAATGTGTTACCCTCATACTATG
*
64927671 ACGGAAGCATCTACTTAGTTCTCATCCAATGACCTTGTCTTAAATGTGTTACCCTCATACTATG
1 ACGGAAGCATCTACTTACTTCTCATCCAATGACCTTGTCTTAAATGTGTTACCCTCATACTATG
64927735 TCCTTGATCT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (64 bp):
ACGGAAGCATCTACTTACTTCTCATCCAATGACCTTGTCTTAAATGTGTTACCCTCATACTATG
Found at i:64931478 original size:16 final size:16
Alignment explanation
Indices: 64931457--64931489 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
64931447 TGCATGAGTT
64931457 TGCTAAAACATTACAA
1 TGCTAAAACATTACAA
64931473 TGCTAAAACATTACAA
1 TGCTAAAACATTACAA
64931489 T
1 T
64931490 TACTAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.27
Consensus pattern (16 bp):
TGCTAAAACATTACAA
Found at i:64932373 original size:35 final size:35
Alignment explanation
Indices: 64932327--64932396 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
64932317 GCAAAGTCTG
64932327 GCAATTGTTTGGCAATTGTATGTCATGTCAAGTTA
1 GCAATTGTTTGGCAATTGTATGTCATGTCAAGTTA
*
64932362 GCAATTGTTTGGCAATTTTATGTCATGTCAAGTTA
1 GCAATTGTTTGGCAATTGTATGTCATGTCAAGTTA
64932397 AATGACAAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.41
Consensus pattern (35 bp):
GCAATTGTTTGGCAATTGTATGTCATGTCAAGTTA
Found at i:64939848 original size:28 final size:28
Alignment explanation
Indices: 64939808--64939886 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
64939798 GCAATCAAAT
* *
64939808 ATGGCACTCAGTGTATGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
64939836 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* *
64939864 ATGACACTTAGTTTACGAAATAT
1 ATGGCACTTAGTGTACGAAATAT
64939887 CGAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:64948894 original size:46 final size:46
Alignment explanation
Indices: 64948840--64948962 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 46
64948830 CACTGGTGCG
* * * * *
64948840 AGCTAGTGTAGGACATGTTTGGGACATGTATCGGCATTGAGACG-A
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGACGTA
* * *
64948885 GTGCTAGTGTAAGACATGTCTGAGACATGCATCGACCTCGAGACGTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGACGTA
*
64948932 AGCCAGTGTAAGACATGTCTGGGACATGCAT
1 AGCTAGTGTAAGACATGTCTGGGACATGCAT
64948963 TGGCTATGAG
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 64 0.98
47 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGACGTA
Found at i:64949009 original size:92 final size:92
Alignment explanation
Indices: 64948844--64949012 Score: 227
Period size: 92 Copynumber: 1.8 Consensus size: 92
64948834 GGTGCGAGCT
* * * *
64948844 AGTGTAGGACATGTTTGGGACATGTATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCTGAG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCCGAG
64948909 ACATGCATCGACCTCGAGACGTAAGCC
66 ACATGCATCGACCTCGAGACGTAAGCC
* * *
64948936 AGTGTAAGACATGTCTGGGACATGCATTGGC-TATGAGATGTGT-C-AGTGTAAGACCATGTCCG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT-TGAGACGAGTGCTAGTGTAAGA-CATGTCCG
64948998 AGACATGGCATCGAC
64 AGACAT-GCATCGAC
64949013 ACGGATATGC
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
90 9 0.13
91 15 0.22
92 43 0.64
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGTCCGAG
ACATGCATCGACCTCGAGACGTAAGCC
Found at i:64956111 original size:45 final size:45
Alignment explanation
Indices: 64956013--64956103 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
64956003 ACGCAATGAG
64956013 TAAGTGAATAACTTTAATCGCAGGGCATCCTCAGGAACACTTTGC
1 TAAGTGAATAACTTTAATCGCAGGGCATCCTCAGGAACACTTTGC
64956058 TAAGTGAATAACTTTAATCGCAGGGCATCCTCAGGAACACTTTGC
1 TAAGTGAATAACTTTAATCGCAGGGCATCCTCAGGAACACTTTGC
64956103 T
1 T
64956104 GTTTGAATGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (45 bp):
TAAGTGAATAACTTTAATCGCAGGGCATCCTCAGGAACACTTTGC
Found at i:64964474 original size:49 final size:49
Alignment explanation
Indices: 64964409--64964966 Score: 990
Period size: 49 Copynumber: 11.4 Consensus size: 49
64964399 TTTACCACAT
* *
64964409 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64964458 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
64964507 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
64964556 ATATATACACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64964605 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
64964654 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64964703 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64964752 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
64964801 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAGCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64964850 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
64964899 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
64964948 ATATATATACACTTTCACA
1 ATATATACACACTTTCACA
64964967 AATTTTAATA
Statistics
Matches: 487, Mismatches: 22, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 487 1.00
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:64968801 original size:40 final size:40
Alignment explanation
Indices: 64968752--64968983 Score: 401
Period size: 40 Copynumber: 5.8 Consensus size: 40
64968742 CCAGCATGAT
* * *
64968752 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
64968792 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
64968832 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
64968872 TGCTCTTCGGAACTTAGTCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
64968912 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
64968952 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGAACTTAGTCCGGATACATCACT
64968984 CTCAATTCTC
Statistics
Matches: 186, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 186 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:64971043 original size:49 final size:49
Alignment explanation
Indices: 64970978--64971534 Score: 990
Period size: 49 Copynumber: 11.4 Consensus size: 49
64970968 TTTACCACAT
* *
64970978 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64971027 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
64971076 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64971125 ATATATACACACTTTCACATTCATCACATCGGCCATTA-GCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64971173 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
64971222 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64971271 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64971320 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
64971369 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAGCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
64971418 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
64971467 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
64971516 ATATATATACACTTTCACA
1 ATATATACACACTTTCACA
64971535 AATTTTAATA
Statistics
Matches: 487, Mismatches: 20, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 0.10
49 439 0.90
ACGTcount: A:0.31, C:0.30, G:0.08, T:0.31
Consensus pattern (49 bp):
ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:64975323 original size:30 final size:30
Alignment explanation
Indices: 64975287--64975347 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
64975277 TCCTTAACTC
64975287 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
64975317 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
64975347 A
1 A
64975348 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:64978336 original size:18 final size:17
Alignment explanation
Indices: 64978293--64978338 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
64978283 AGCCCATTGT
*
64978293 AGTAACAATAAATAGTGC
1 AGTAACAGT-AATAGTGC
64978311 AGTAACAGTAATCAGTGC
1 AGTAACAGTAAT-AGTGC
64978329 AGTAACAGTA
1 AGTAACAGTA
64978339 TACAAGTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 3 0.12
18 23 0.88
ACGTcount: A:0.46, C:0.13, G:0.20, T:0.22
Consensus pattern (17 bp):
AGTAACAGTAATAGTGC
Found at i:64978692 original size:27 final size:27
Alignment explanation
Indices: 64978656--64978811 Score: 242
Period size: 27 Copynumber: 5.8 Consensus size: 27
64978646 TATACATCAC
* *
64978656 ATAA-GGCAAAACAATCATCTTACCAT
1 ATAAGGGCAAAACAGTCATTTTACCAT
*
64978682 ATAAGGGCAAAATAGTCATTTTACCAT
1 ATAAGGGCAAAACAGTCATTTTACCAT
* *
64978709 ATAAGGGCAAAATAGTCATTTTACCAC
1 ATAAGGGCAAAACAGTCATTTTACCAT
64978736 ATAAGGGCAAAACAGTCATTTTACCAT
1 ATAAGGGCAAAACAGTCATTTTACCAT
* *
64978763 ATAAGGGCAAAATAGTCATTTTACCAC
1 ATAAGGGCAAAACAGTCATTTTACCAT
64978790 ATAAGGGCAAAACAGTCATTTT
1 ATAAGGGCAAAACAGTCATTTT
64978812 TGAATCTGGG
Statistics
Matches: 120, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
26 4 0.03
27 116 0.97
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (27 bp):
ATAAGGGCAAAACAGTCATTTTACCAT
Found at i:64978761 original size:81 final size:80
Alignment explanation
Indices: 64978653--64978811 Score: 273
Period size: 81 Copynumber: 2.0 Consensus size: 80
64978643 ATATATACAT
*
64978653 CACATAAGGCAAAACAATCATCTTACCATATAAGGGCAAAATAGTCATTTTACCATATAAGGGCA
1 CACATAAGGCAAAACAATCATCTTACCATATAAGGGCAAAATAGTCATTTTACCACATAAGGGCA
*
64978718 AAATAGTCATTTTAC
66 AAACAGTCATTTTAC
* *
64978733 CACATAAGGGCAAAACAGTCATTTTACCATATAAGGGCAAAATAGTCATTTTACCACATAAGGGC
1 CACATAA-GGCAAAACAATCATCTTACCATATAAGGGCAAAATAGTCATTTTACCACATAAGGGC
64978798 AAAACAGTCATTTT
65 AAAACAGTCATTTT
64978812 TGAATCTGGG
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
80 7 0.09
81 67 0.91
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.26
Consensus pattern (80 bp):
CACATAAGGCAAAACAATCATCTTACCATATAAGGGCAAAATAGTCATTTTACCACATAAGGGCA
AAACAGTCATTTTAC
Found at i:64983887 original size:40 final size:39
Alignment explanation
Indices: 64983760--64983889 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
64983750 ATGCTGGAAA
*
64983760 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * **
64983800 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
64983840 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
64983880 TTATATCCGG
1 TTATATCCGG
64983890 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:64991111 original size:40 final size:39
Alignment explanation
Indices: 64990984--64991113 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
64990974 ATGCTGGAAA
*
64990984 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * **
64991024 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
64991064 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
64991104 TTATATCCGG
1 TTATATCCGG
64991114 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:64997313 original size:28 final size:28
Alignment explanation
Indices: 64997256--64997319 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
64997246 TGGGAAGTAG
* * * *
64997256 TTGGGCCTGATGGGCCATATGGATGTGA
1 TTGGGCCTGATGGGCCAGATGAACGAGA
*
64997284 TTGGGCCTGATGGGCCAGGTGAACGAGA
1 TTGGGCCTGATGGGCCAGATGAACGAGA
*
64997312 TTCGGCCT
1 TTGGGCCT
64997320 AAAGGGCCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.17, C:0.19, G:0.39, T:0.25
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCAGATGAACGAGA
Found at i:65000208 original size:20 final size:20
Alignment explanation
Indices: 65000169--65000205 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
65000159 ATATGTTATA
*
65000169 ATGATATATTATCTATTTGG
1 ATGACATATTATCTATTTGG
65000189 ATGACATATT-TCTATTT
1 ATGACATATTATCTATTT
65000206 TGGTTTCGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.30, C:0.08, G:0.11, T:0.51
Consensus pattern (20 bp):
ATGACATATTATCTATTTGG
Found at i:65001295 original size:37 final size:37
Alignment explanation
Indices: 65001242--65001344 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
65001232 CGAATAGTCC
*
65001242 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
65001279 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
65001316 CCACACGTAGTCATTGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
65001345 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:65001543 original size:48 final size:48
Alignment explanation
Indices: 65001485--65001669 Score: 334
Period size: 48 Copynumber: 3.9 Consensus size: 48
65001475 ATATACACAC
*
65001485 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
65001533 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
65001581 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
65001629 ATCTCATACATATTTCACACTAGTCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
65001670 CACATATATA
Statistics
Matches: 131, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 131 1.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:65008747 original size:40 final size:40
Alignment explanation
Indices: 65008692--65008869 Score: 157
Period size: 40 Copynumber: 4.5 Consensus size: 40
65008682 TGGATGATAA
** * *
65008692 CCGGGCTAAGTCCCGAAGGTGTTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTACGCGAGTGACTA-TAT
* *
65008732 CCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTACGCGAGTGACTATAT
* *** *
65008772 CCGGGCTAAGTCCTGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTACGCGAGTGACTATAT
* * *
65008812 CTGGGCTATGTCCCGAAGGCATTCGA-GCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-TACGCGAGTGA-CTATAT
* *
65008852 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
65008870 TACTTGGCTT
Statistics
Matches: 117, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 15 0.13
40 102 0.87
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTACGCGAGTGACTATAT
Found at i:65016882 original size:40 final size:40
Alignment explanation
Indices: 65016765--65016940 Score: 227
Period size: 39 Copynumber: 4.5 Consensus size: 40
65016755 TGGATGATAA
* * * *
65016765 CCGGGCTAAGTCCCGAAGGC-TTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
65016804 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
65016843 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
65016883 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
65016923 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
65016941 TACTTGGCTT
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
38 1 0.01
39 69 0.55
40 55 0.44
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:65016902 original size:79 final size:79
Alignment explanation
Indices: 65016765--65016940 Score: 225
Period size: 79 Copynumber: 2.2 Consensus size: 79
65016755 TGGATGATAA
* * *
65016765 CCGGGCTAAGTCCCGAAGGCTTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATT-GT
1 CCGGGCTAAGTCCCGAAGGCTTCGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTCGA
65016829 GCGAGTTA-CTATAT
66 GCGAG-TAGCTATAT
* * *
65016843 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TATCCGGGCTATGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGC-TTCGCGCGAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTC
65016907 GAGCGAGTAGCTATAT
64 GAGCGAGTAGCTATAT
* *
65016923 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
65016941 TACTTGGCTT
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
78 21 0.24
79 51 0.59
80 14 0.16
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCTTCGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTCGA
GCGAGTAGCTATAT
Found at i:65020908 original size:27 final size:27
Alignment explanation
Indices: 65020834--65021170 Score: 466
Period size: 27 Copynumber: 12.6 Consensus size: 27
65020824 AAAGTACTCC
*
65020834 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
65020861 C-AGTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
65020887 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
65020914 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
65020941 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
65020968 CGATTTACAGAATTACCGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
65020994 CAATTTACATAATTACCGTTTTACCCC
1 CGATTTACAGAATTACCGTTTTACCCT
* *
65021021 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
65021048 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
65021075 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
65021102 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
65021129 TGATTTACAGAATTACTGTTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
*
65021155 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
65021171 TAAAATACCC
Statistics
Matches: 280, Mismatches: 26, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
26 64 0.23
27 215 0.77
28 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:65021035 original size:134 final size:134
Alignment explanation
Indices: 65020834--65021170 Score: 509
Period size: 134 Copynumber: 2.5 Consensus size: 134
65020824 AAAGTACTCC
* * * **
65020834 CGATTTATAGAATTACCGTTTTACCCTCAGTTATAGAATTACCGTTTTACCCTCGATTTGTAAAA
1 CGATTTATAGAATTACCGTTTTACCCTCATTTACAGAATTACCGTTTTACCCCCGATTTACAAAA
*
65020899 TTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTT
66 TTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGA-TTTACAGAATTACCATTTT
65020963 ACCCT
130 ACCCT
* * *
65020968 CGATTTACAGAATTACCGTTTTACCC-CAATTTACATAATTACCGTTTTACCCCCGATTTACATA
1 CGATTTATAGAATTACCGTTTTACCCTC-ATTTACAGAATTACCGTTTTACCCCCGATTTACAAA
*
65021032 ATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTT
65 ATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTT
65021097 ACCCT
130 ACCCT
* * *
65021102 CGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTA-CCCCGATTTACAAA
1 CGATTTATAGAATTACCGTTTTACCC-TCATTTACAGAATTACCGTTTTACCCCCGATTTACAAA
65021166 ATTAC
65 ATTAC
65021171 TAAAATACCC
Statistics
Matches: 182, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
133 1 0.01
134 161 0.88
135 20 0.11
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (134 bp):
CGATTTATAGAATTACCGTTTTACCCTCATTTACAGAATTACCGTTTTACCCCCGATTTACAAAA
TTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTA
CCCT
Found at i:65022434 original size:25 final size:25
Alignment explanation
Indices: 65022405--65022452 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
65022395 CCTTATAATG
* * *
65022405 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
65022430 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
65022453 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:65022521 original size:20 final size:20
Alignment explanation
Indices: 65022496--65022534 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
65022486 TAAATATGGT
65022496 ATGTATGAGATGCACATGAC
1 ATGTATGAGATGCACATGAC
*
65022516 ATGTATGATATGCACATGA
1 ATGTATGAGATGCACATGA
65022535 TGTAATCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (20 bp):
ATGTATGAGATGCACATGAC
Found at i:65022612 original size:24 final size:24
Alignment explanation
Indices: 65022585--65022703 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
65022575 GAGGAAGTGA
*
65022585 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
65022609 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
65022632 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
65022656 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
65022680 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
65022704 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:65022654 original size:47 final size:48
Alignment explanation
Indices: 65022585--65022703 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
65022575 GAGGAAGTGA
65022585 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
65022632 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
65022680 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
65022704 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:65022931 original size:31 final size:31
Alignment explanation
Indices: 65022896--65022959 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
65022886 CGTTTACAGT
65022896 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
65022927 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
65022958 AA
1 AA
65022960 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:65025751 original size:27 final size:27
Alignment explanation
Indices: 65025718--65026053 Score: 439
Period size: 27 Copynumber: 12.6 Consensus size: 27
65025708 AAGTACTCCT
*
65025718 GATTTATAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* *
65025745 -AGGTTATAGAATTACCGTTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
** *
65025772 GATTTGTAAAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
65025799 GATTTACAGAATTACTGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
**
65025826 -AGTTTACAGAATTACTATTTTACCCTC
1 GA-TTTACAGAATTACCGTTTTACCCTC
*
65025853 GATTTACAGAATTACCATTTTACCC-C
1 GATTTACAGAATTACCGTTTTACCCTC
* *
65025879 AATTTACATAATTACCGTTTTACCC-C
1 GATTTACAGAATTACCGTTTTACCCTC
* *
65025905 GATTTACATAATTATCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
65025932 GATTTACAGAATTACCGTTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
*
65025959 GATTTACAGAATTACCATTTTACCCTC
1 GATTTACAGAATTACCGTTTTACCCTC
* * *
65025986 GATTTATAGAATTACTGTTTTACCCTT
1 GATTTACAGAATTACCGTTTTACCCTC
*
65026013 GATTTACAGAATTACTGTTTTACCC-C
1 GATTTACAGAATTACCGTTTTACCCTC
*
65026039 GATTTACAAAATTAC
1 GATTTACAGAATTAC
65026054 TAAAATACCC
Statistics
Matches: 279, Mismatches: 25, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
26 63 0.23
27 214 0.77
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
GATTTACAGAATTACCGTTTTACCCTC
Found at i:65025947 original size:160 final size:161
Alignment explanation
Indices: 65025727--65026053 Score: 471
Period size: 160 Copynumber: 2.0 Consensus size: 161
65025717 TGATTTATAG
* **
65025727 AATTACCGTTTTACCCTCAGGTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTT
1 AATTACCGTTTTACCCTCAGGTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTT
**
65025792 TACCCTCGATTTACAGAATTACTGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGAT
66 TACCCTCGATTTACAGAATTACCATTTTACCCTCGA-TTTACAGAATTACTATTTTACCCTCGAT
*
65025856 TTACAGAATTACCATTTTACCCCAATTTACAT
130 TTACAGAATTACCATTTTACCCCAATTTACAA
* * * *
65025888 AATTACCGTTTTACCC-C-GATTTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTT
1 AATTACCGTTTTACCCTCAG-GTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTT
* * *
65025951 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGAT
65 TTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGAT
** *
65026016 TTACAGAATTACTGTTTTACCCCGATTTACAA
130 TTACAGAATTACCATTTTACCCCAATTTACAA
65026048 AATTAC
1 AATTAC
65026054 TAAAATACCC
Statistics
Matches: 148, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
159 1 0.01
160 130 0.88
161 17 0.11
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (161 bp):
AATTACCGTTTTACCCTCAGGTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTT
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
TACAGAATTACCATTTTACCCCAATTTACAA
Found at i:65026080 original size:27 final size:27
Alignment explanation
Indices: 65026046--65026117 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
65026036 CCCGATTTAC
* **
65026046 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
* **
65026073 GAAATTACCGCAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCTTAATTTGT
*
65026100 AAAACTACCAAAATACCC
1 AAAATTACCAAAATACCC
65026118 CTGTATGGTA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAATTTGT
Found at i:65026091 original size:80 final size:81
Alignment explanation
Indices: 65025748--65026097 Score: 215
Period size: 80 Copynumber: 4.4 Consensus size: 81
65025738 TACCCTCAGG
*** * ** * *
65025748 TTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTACAGAATTA
1 TTATAGAATTACCGCAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTA
*****
65025813 CTGTTTTACCCTC-AGT
66 CCAAAATACCCTCGA-T
* ***** * * * *
65025829 TTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCATTTTACCC-CAATTTACATAATTA
1 TTATAGAATTACCGCAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTA
****
65025893 CCGTTTTACCC-CGAT
66 CCAAAATACCCTCGAT
* * * *** * *
65025908 TTACATAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTA
1 TTATAGAATTACCGCAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTA
***
65025973 CCATTTTACCCTCGAT
66 CCAAAATACCCTCGAT
* *** *
65025989 TTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCC-CGATTTACAAAATTA
1 TTATAGAATTACCGCAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTA
* * *
65026053 CTAAAATACCCTTGGT
66 CCAAAATACCCTCGAT
* *
65026069 TTGT-GAAATTACCGCAATACCCTTAATTT
1 TTATAG-AATTACCGCAATACCCTTGATTT
65026098 GTAAAACTAC
Statistics
Matches: 228, Mismatches: 37, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
79 47 0.21
80 92 0.40
81 89 0.39
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (81 bp):
TTATAGAATTACCGCAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTA
CCAAAATACCCTCGAT
Found at i:65027318 original size:25 final size:25
Alignment explanation
Indices: 65027290--65027337 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
65027280 TTATACCATG
* * *
65027290 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
65027315 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
65027338 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:65027406 original size:20 final size:20
Alignment explanation
Indices: 65027381--65027419 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
65027371 TAAATATGGT
65027381 ATGTATGAGATGCACATGAC
1 ATGTATGAGATGCACATGAC
*
65027401 ATGTATGATATGCACATGA
1 ATGTATGAGATGCACATGA
65027420 TGTAATCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (20 bp):
ATGTATGAGATGCACATGAC
Found at i:65027497 original size:24 final size:24
Alignment explanation
Indices: 65027470--65027588 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
65027460 GAGGAAGTGA
*
65027470 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
65027494 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
65027517 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
65027541 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
65027565 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
65027589 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:65027539 original size:47 final size:48
Alignment explanation
Indices: 65027470--65027588 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
65027460 GAGGAAGTGA
65027470 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
65027517 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
65027565 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
65027589 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:65027840 original size:30 final size:31
Alignment explanation
Indices: 65027780--65027842 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
65027770 CGTTTACAGT
65027780 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
65027811 AAAGGCTTCGGCCCAGTGTTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
65027841 AA
1 AA
65027843 CATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:65030358 original size:27 final size:27
Alignment explanation
Indices: 65030328--65030403 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
65030318 GTAATAAAGG
* *
65030328 AAAATTACCAAAATACCCCTAAATTGT
1 AAAATTATCGAAATACCCCTAAATTGT
* *
65030355 AAAATTATCGAAATA-CCCTCGACTTGT
1 AAAATTATCGAAATACCCCT-AAATTGT
65030382 AAAATTATCGAAATACCCCTAA
1 AAAATTATCGAAATACCCCTAA
65030404 GGGCGAGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 4 0.10
27 34 0.81
28 4 0.10
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.26
Consensus pattern (27 bp):
AAAATTATCGAAATACCCCTAAATTGT
Found at i:65031419 original size:16 final size:16
Alignment explanation
Indices: 65031377--65031421 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
65031367 AAGGTTTTTA
*
65031377 TTTAAAAAAAAAGGTT
1 TTTAAAAAACAAGGTT
*
65031393 TTCAATGAAAACAAGGTT
1 TTTAA--AAAACAAGGTT
65031411 TTTAAAAAACA
1 TTTAAAAAACA
65031422 CTTCAATGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 10 0.42
18 14 0.58
ACGTcount: A:0.53, C:0.07, G:0.11, T:0.29
Consensus pattern (16 bp):
TTTAAAAAACAAGGTT
Found at i:65034994 original size:27 final size:28
Alignment explanation
Indices: 65034938--65035007 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
65034928 AAATTTGTAC
65034938 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
65034966 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
65034993 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
65035008 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:65035018 original size:27 final size:27
Alignment explanation
Indices: 65034938--65035019 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
65034928 AAATTTGTAC
* *
65034938 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
65034966 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
65034993 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
65035020 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:65039181 original size:47 final size:47
Alignment explanation
Indices: 65039122--65039233 Score: 206
Period size: 47 Copynumber: 2.4 Consensus size: 47
65039112 GCACTAAAAA
65039122 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
*
65039169 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
*
65039216 AAGGATATCATGTAAGAC
1 AAGGATACCATGTAAGAC
65039234 TATGCCAAGG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
Found at i:65039340 original size:55 final size:54
Alignment explanation
Indices: 65039249--65039521 Score: 345
Period size: 55 Copynumber: 5.0 Consensus size: 54
65039239 CAAGGCTCAT
* * *
65039249 CATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGG
1 CATTGATGAGTTCTATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGG
* ** *
65039303 CATTGATGAGTTACTATAAGGCAAAGG-TCCCATGTAAGACCATACCAAGGCATGG
1 CATTGATGAGTT-CTATAAGGC-AAGGATACCATGTAAGACCATGTCAAGACATGG
* * *
65039358 CATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGG
1 CATTGATGAGTTCTATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGG
* * *
65039412 CATTGATGAGTTACTATAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGG
1 CATTGATGAGTT-CTATAAGGC-AAGGATACCATGTAAGACCATGTCAAGACATGG
* * *
65039467 CATTGGTGAGTTC-ATAAGGCAAGGATACGATGCAAGACCATGTCAAGACATGG
1 CATTGATGAGTTCTATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGG
65039520 CA
1 CA
65039522 ATGGTAAGTT
Statistics
Matches: 187, Mismatches: 26, Indels: 13
0.83 0.12 0.06
Matches are distributed among these distances:
52 4 0.02
53 36 0.19
54 54 0.29
55 85 0.45
56 8 0.04
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
CATTGATGAGTTCTATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGG
Found at i:65039415 original size:109 final size:109
Alignment explanation
Indices: 65039224--65039521 Score: 487
Period size: 109 Copynumber: 2.7 Consensus size: 109
65039214 ATAAGGATAT
*
65039224 CATGTAAGACTATGCCAAGGCTCAT--CATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGA
1 CATGTAAGACCATGCCAAGG--CATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGA
65039287 CCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
64 CCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
*
65039333 CATGTAAGACCATACCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
65039398 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
* * * *
65039442 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATA-CGATGCAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATC-ATGTAAGAC
65039505 CATGTCAAGACATGGCA
65 CATGTCAAGACATGGCA
65039522 ATGGTAAGTT
Statistics
Matches: 179, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
107 4 0.02
108 38 0.21
109 137 0.77
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
Found at i:65045098 original size:54 final size:54
Alignment explanation
Indices: 65045060--65045434 Score: 529
Period size: 54 Copynumber: 6.9 Consensus size: 54
65045050 GTACTCCCGA
* * *
65045060 TTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAA
1 TTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
** *
65045114 TTTTTAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCAG
1 TTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
*
65045168 TTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
1 TTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
* ** *
65045222 TTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCAG
1 TTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
* * *
65045276 TTTACAGAATTACTGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCTC-G
1 TTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
** * * *
65045329 ATTTGTAAAATTACCGTTTTACCCTTGATTTACAGAATTACTAG-TTTACCCTCAG
1 -TTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTAC-CGTTTTACCCTCAG
* *
65045384 TTTACAAAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCT
1 TTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCT
65045435 TGATTGTGAA
Statistics
Matches: 288, Mismatches: 29, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.00
54 285 0.99
55 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (54 bp):
TTTACAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAG
Found at i:65045262 original size:27 final size:27
Alignment explanation
Indices: 65045057--65045439 Score: 470
Period size: 27 Copynumber: 14.2 Consensus size: 27
65045047 AAAGTACTCC
65045057 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
65045084 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** *
65045111 CAATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
65045138 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
65045165 C-AGTTTACAAAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
65045192 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
65045219 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
65045246 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
65045273 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
65045300 CAATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
65045327 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
65045354 TGATTTACAGAATTACTAG-TTTACCCT
1 CGATTTACAGAATTAC-CGTTTTACCCT
* *
65045381 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
65045408 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
65045435 TGATT
1 CGATT
65045440 GTGAAATTAC
Statistics
Matches: 308, Mismatches: 38, Indels: 20
0.84 0.10 0.05
Matches are distributed among these distances:
26 5 0.02
27 298 0.97
28 5 0.02
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:65045639 original size:27 final size:27
Alignment explanation
Indices: 65045444--65045639 Score: 230
Period size: 27 Copynumber: 7.3 Consensus size: 27
65045434 TTGATTGTGA
* *
65045444 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
65045471 AATTTCCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
** * *
65045498 AATTACTAAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
65045525 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
**
65045552 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
65045579 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * *
65045606 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
65045633 AATTACC
1 AATTACC
65045640 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 146 1.00
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:65045876 original size:27 final size:26
Alignment explanation
Indices: 65045838--65045920 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
65045828 CGGAGGAAGC
65045838 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
65045865 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * * **
65045891 GTATTTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
65045918 GTT
1 GTT
65045921 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:65046253 original size:27 final size:27
Alignment explanation
Indices: 65046233--65046304 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
65046223 GGTGGGTTTG
*
65046233 CCACATTATCTG-ATTCTGGTGGCTCTA
1 CCACAATATCTGTA-TCTGGTGGCTCTA
* *
65046260 CCACAATATCTGTATCTGGTGACTCTG
1 CCACAATATCTGTATCTGGTGGCTCTA
* *
65046287 TCACGATATCTGT-TCTGG
1 CCACAATATCTGTATCTGG
65046305 CAGCCATGCT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.13
27 33 0.85
28 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (27 bp):
CCACAATATCTGTATCTGGTGGCTCTA
Found at i:65046456 original size:6 final size:6
Alignment explanation
Indices: 65046447--65046604 Score: 164
Period size: 6 Copynumber: 26.3 Consensus size: 6
65046437 CTGTCACATA
* *
65046447 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
*
65046495 ATTCTG -TTACTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
* * *
65046543 ATTCTT ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
65046591 GTTCTA ATTCTG AT
1 ATTCTG ATTCTG AT
65046605 AATGTTTCTT
Statistics
Matches: 126, Mismatches: 16, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
5 9 0.07
6 110 0.87
7 6 0.05
8 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:65046486 original size:30 final size:30
Alignment explanation
Indices: 65046422--65046604 Score: 253
Period size: 30 Copynumber: 6.1 Consensus size: 30
65046412 TTGCATTCAC
* *
65046422 ATTCTAATTCTGATTCTGTCACATAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
65046453 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
65046483 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
65046513 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
* *
65046543 ATTCTTATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
65046573 ATTCTGATTCTCATTTTGGTT-CTAATTCTG
1 ATTCTGATTCTGATTCT-GTTACTAATTCTG
65046603 AT
1 AT
65046605 AATGTTTCTT
Statistics
Matches: 137, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
29 1 0.01
30 112 0.82
31 24 0.18
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:65046613 original size:18 final size:17
Alignment explanation
Indices: 65046592--65046625 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
65046582 CTCATTTTGG
65046592 TTCTAATTCTGATAATGT
1 TTCTAATTCTG-TAATGT
*
65046610 TTCTTATTCTGTAATG
1 TTCTAATTCTGTAATG
65046626 GGCTAAGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:65048218 original size:24 final size:24
Alignment explanation
Indices: 65048185--65048232 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
65048175 AATTCACATA
65048185 GAATTCGCGTACTAACTCATCATC
1 GAATTCGCGTACTAACTCATCATC
* *
65048209 GAATTTGCGTACTAACTCCTCATC
1 GAATTCGCGTACTAACTCATCATC
65048233 CACACTAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.31
Consensus pattern (24 bp):
GAATTCGCGTACTAACTCATCATC
Found at i:65057666 original size:38 final size:38
Alignment explanation
Indices: 65057615--65057692 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
65057605 TCTAACATGT
65057615 TAACACAATAACTCAAGTGTATCTACTTTTAATTTCAC
1 TAACACAATAACTCAAGTGTATCTACTTTTAATTTCAC
* *
65057653 TAACACAATAACTCAAGTGTATTTACTTTTATTTTCAC
1 TAACACAATAACTCAAGTGTATCTACTTTTAATTTCAC
65057691 TA
1 TA
65057693 TTTACTCCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.40
Consensus pattern (38 bp):
TAACACAATAACTCAAGTGTATCTACTTTTAATTTCAC
Found at i:65063699 original size:29 final size:29
Alignment explanation
Indices: 65063633--65063727 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 29
65063623 AAGTTCACAT
* *
65063633 ACATGTATATGGCCCACTAGGCCC-AATC
1 ACATTTATATGGCCCATTAGGCCCAAATC
*
65063661 ACATTTATATGACCCATTAGGCCCAAATC
1 ACATTTATATGGCCCATTAGGCCCAAATC
** * *
65063690 ATGTTTATATGGCCCATCAGGCCCAATTC
1 ACATTTATATGGCCCATTAGGCCCAAATC
65063719 ACATTTATA
1 ACATTTATA
65063728 GTCATGCTCA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 21 0.38
29 35 0.62
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (29 bp):
ACATTTATATGGCCCATTAGGCCCAAATC
Found at i:65066719 original size:2 final size:2
Alignment explanation
Indices: 65066712--65066741 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
65066702 ACCAGAACAA
65066712 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
65066742 GTGGCGAAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:65068059 original size:31 final size:31
Alignment explanation
Indices: 65068017--65068099 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
65068007 TCAGTCTCGA
65068017 CATA-TACTGGGCCGAAGCCTTTTCATAAAT
1 CATATTACTGGGCCGAAGCCTTTTCATAAAT
65068047 CATATTACTGGGCCGAAGCCTTTTCATAAAT
1 CATATTACTGGGCCGAAGCCTTTTCATAAAT
*
65068078 CATATCACT-GGCCGAAGCCTTT
1 CATATTACTGGGCCGAAGCCTTT
65068100 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 17 0.33
31 34 0.67
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATTACTGGGCCGAAGCCTTTTCATAAAT
Found at i:65068347 original size:25 final size:25
Alignment explanation
Indices: 65068319--65068388 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 25
65068309 TTCTTTTAAT
*
65068319 AACTAGGGCAAAGCCCTTTCTGA-TA
1 AACT-GGGCAAAGCCCTTTCTCAGTA
*
65068344 AACTGGGGCAAAGCCCTTTTTCAGTA
1 AACT-GGGCAAAGCCCTTTCTCAGTA
*
65068370 AACTGGCGCAGAGCCCTTT
1 AACTGG-GCAAAGCCCTTT
65068389 TAGCACTTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
25 22 0.56
26 17 0.44
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AACTGGGCAAAGCCCTTTCTCAGTA
Found at i:65069345 original size:27 final size:27
Alignment explanation
Indices: 65069315--65069412 Score: 92
Period size: 27 Copynumber: 3.6 Consensus size: 27
65069305 GTAAATCTAC
65069315 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
* *
65069342 AAACAAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
65069368 AGAAAGTCAAAGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
65069398 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
65069413 TGGTAATTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
26 1 0.02
27 31 0.53
28 7 0.12
29 19 0.32
30 1 0.02
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:65069419 original size:27 final size:26
Alignment explanation
Indices: 65069402--65069561 Score: 149
Period size: 27 Copynumber: 6.0 Consensus size: 26
65069392 TTTTGTAAAT
65069402 CAGGGGTATTTTGGTAATTTTACAAA
1 CAGGGGTATTTTGGTAATTTTACAAA
** * * *
65069428 TTGAGGGTATTTCGATAATTTCACAAA
1 CAG-GGGTATTTTGGTAATTTTACAAA
* *
65069455 CCAGTGGTATTTCGGTAATTTTACAAA
1 -CAGGGGTATTTTGGTAATTTTACAAA
*
65069482 CTAGGGCTATTTTGGTAATTTTACAAA
1 C-AGGGGTATTTTGGTAATTTTACAAA
* **
65069509 CTAGGGGTATTTTGGTAATTCTATCCTA
1 C-AGGGGTATTTTGGTAATTTTA-CAAA
** *
65069537 CAGGGGTATTTCAGTAATTTCACAA
1 CAGGGGTATTTTGGTAATTTTACAA
65069562 TCGAGGGTAA
Statistics
Matches: 107, Mismatches: 23, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
26 3 0.03
27 100 0.93
28 4 0.04
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.38
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTTTACAAA
Found at i:65069464 original size:54 final size:53
Alignment explanation
Indices: 65069379--65069528 Score: 183
Period size: 54 Copynumber: 2.8 Consensus size: 53
65069369 GAAAGTCAAA
* ** * *
65069379 GGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT-AG
* * *
65069433 GGTATTTCGATAATTTCACAAACCAGTGGTATTTCGGTAATTTTACAAACTAG
1 GGTATTTCGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
* * *
65069486 GGCTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
1 GG-TATTTCGATAATTTTACAAACCAGGGGTATTTTGGTAATT
65069529 CTATCCTACA
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
53 4 0.05
54 77 0.95
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.41
Consensus pattern (53 bp):
GGTATTTCGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAG
Found at i:65069545 original size:81 final size:81
Alignment explanation
Indices: 65069403--65069561 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 81
65069393 TTTGTAAATC
* * *
65069403 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGATAATTTCACAAACCAGTGGTATTTC
1 AGGGCTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACCAGGGGTATTTC
* *
65069468 GGTAATTTTACAAACT
66 AGTAATTTCACAAACT
* * **
65069484 AGGGCTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCCTA-CAGGGGTAT
1 AGGGCTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGATAATTTC-A-CAAACCAGGGGTAT
65069546 TTCAGTAATTTCACAA
63 TTCAGTAATTTCACAA
65069562 TCGAGGGTAA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
80 3 0.05
81 59 0.89
82 4 0.06
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (81 bp):
AGGGCTATTTTGGTAATTTTACAAATAGAGGGTATTTCGATAATTTCACAAACCAGGGGTATTTC
AGTAATTTCACAAACT
Found at i:65069594 original size:27 final size:27
Alignment explanation
Indices: 65069560--65069676 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 27
65069550 GTAATTTCAC
65069560 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* **
65069587 AATTGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * * *
65069614 AATCGTGCGTAAAACGCTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * * **
65069641 AATCGAGGGTAGAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
65069668 AATCGAGGG
1 AATCGAGGG
65069677 CATTTCAGTA
Statistics
Matches: 73, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:65069671 original size:54 final size:54
Alignment explanation
Indices: 65069568--65069672 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
65069558 ACAATCGAGG
* * * * * **
65069568 GTAAAACGGTAATTTTGTAAATTGAGGGTAAAATAGTAATTTTGTAAATCGTGC
1 GTAAAACGCTAATTCTATAAATCGAGGGTAAAATAGTAATTCTACAAATCGTGC
* *
65069622 GTAAAACGCTAATTCTATAAATCGAGGGTAGAATGGTAATTCTACAAATCG
1 GTAAAACGCTAATTCTATAAATCGAGGGTAAAATAGTAATTCTACAAATCG
65069673 AGGGCATTTC
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (54 bp):
GTAAAACGCTAATTCTATAAATCGAGGGTAAAATAGTAATTCTACAAATCGTGC
Found at i:65070836 original size:26 final size:27
Alignment explanation
Indices: 65070807--65070860 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
65070797 TCAGACAAGT
*
65070807 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
65070833 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
65070860 T
1 T
65070861 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:65070892 original size:27 final size:27
Alignment explanation
Indices: 65070862--65071030 Score: 220
Period size: 27 Copynumber: 6.3 Consensus size: 27
65070852 GGGCAAAATG
* * *
65070862 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
65070889 GTAATTCTACCCTAC-AGGGTATTTC-
1 GTAATTCTACCCTACAAGGGTATTTCA
*
65070914 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAAGGGTATTTCA
65070942 GTAATTCTACCCTAC-AGAGGTATTTCA
1 GTAATTCTACCCTACAAG-GGTATTTCA
* *
65070969 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
65070996 GTAATTCTA-CCTACAGGGGTCTTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
65071022 GTAATTCTA
1 GTAATTCTA
65071031 TAACTTATCC
Statistics
Matches: 128, Mismatches: 9, Indels: 11
0.86 0.06 0.07
Matches are distributed among these distances:
25 1 0.01
26 48 0.38
27 77 0.60
28 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:65070926 original size:53 final size:53
Alignment explanation
Indices: 65070862--65071030 Score: 243
Period size: 53 Copynumber: 3.2 Consensus size: 53
65070852 GGGCAAAATG
* * * *
65070862 GTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCA
65070914 GATAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGAGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAG-GGTATTTCA
* *
65070969 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA-CCTACAGGGGTCTTTCA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACA-GGGTATTTCA
65071022 GTAATTCTA
1 GTAATTCTA
65071031 TAACTTATCC
Statistics
Matches: 107, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
52 1 0.01
53 62 0.58
54 43 0.40
55 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (53 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGTATTTCA
Found at i:65070983 original size:80 final size:80
Alignment explanation
Indices: 65070862--65071030 Score: 261
Period size: 80 Copynumber: 2.1 Consensus size: 80
65070852 GGGCAAAATG
*
65070862 GTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTACA-GGGTATTTCGATAATTCTACC
1 GTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTA-C
65070926 CTACAGGGGTATTTCA
65 CTACAGGGGTATTTCA
* * *
65070942 GTAATTCTACCCTAC-AGAGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GTAATTCTACCCCACAAG-GGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTAC
*
65071006 CTACAGGGGTCTTTCA
65 CTACAGGGGTATTTCA
65071022 GTAATTCTA
1 GTAATTCTA
65071031 TAACTTATCC
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
79 2 0.02
80 62 0.76
81 18 0.22
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (80 bp):
GTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACC
TACAGGGGTATTTCA
Found at i:65073509 original size:28 final size:28
Alignment explanation
Indices: 65073477--65073575 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
65073467 GCAATAAGCC
*
65073477 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
65073505 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
65073533 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
65073562 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65073576 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:65081184 original size:28 final size:28
Alignment explanation
Indices: 65081152--65081250 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
65081142 GCAATAAGCC
*
65081152 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
65081180 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
65081208 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
65081237 CGCACACTTAGTGC
1 CGCACACTTAGTGC
65081251 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:65088651 original size:25 final size:24
Alignment explanation
Indices: 65088615--65088668 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
65088605 GATGTTCAAG
65088615 AGAGCCATATCAAGAAGCTCAAAA
1 AGAGCCATATCAAGAAGCTCAAAA
* * *
65088639 AGAGCCTATATCAGGATGCTCATAA
1 AGAGCC-ATATCAAGAAGCTCAAAA
65088664 AGAGC
1 AGAGC
65088669 TGCATTTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 6 0.23
25 20 0.77
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.17
Consensus pattern (24 bp):
AGAGCCATATCAAGAAGCTCAAAA
Found at i:65092012 original size:40 final size:39
Alignment explanation
Indices: 65091963--65092170 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 39
65091953 TCTTCGGAAT
* * *
65091963 TTAG-CCGGATATAACCACAAACACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
65092002 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
65092042 TTAGCCCGGATTTAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
65092082 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
65092122 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
65092162 TTAGCCCGG
1 TTAGCCCGG
65092171 GTATCATTCA
Statistics
Matches: 146, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.02
40 140 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:65092090 original size:80 final size:80
Alignment explanation
Indices: 65091963--65092170 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 80
65091953 TCTTCGGAAT
* * * * * * *** *
65091963 TTAG-CCGGATATAACCACAAACACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
65092027 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * *
65092042 TTAGCCCGGATTTAA-CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCA
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCA
*
65092106 CGAATGCCTTCGGGTC
65 CAAATGCCTTCGGGTC
* *
65092122 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
65092171 GTATCATTCA
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 5 0.05
80 102 0.94
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
AAATGCCTTCGGGTC
Found at i:65100605 original size:47 final size:47
Alignment explanation
Indices: 65100536--65100785 Score: 419
Period size: 47 Copynumber: 5.3 Consensus size: 47
65100526 CCCTTCGGGA
* * *
65100536 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
65100583 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65100630 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
65100677 CTTATCACACATATGCACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
65100724 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
65100771 CTTATCACACATATA
1 CTTATCACATATATA
65100786 TGTATATCAT
Statistics
Matches: 189, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 189 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:65104344 original size:40 final size:39
Alignment explanation
Indices: 65104295--65104502 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 39
65104285 TCTTCGGAAT
* * *
65104295 TTAG-CCGGATATAACCACAAACACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
65104334 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* * *
65104374 TTAGCTCGGATTTAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
**
65104414 TTAGCCCGGATATAACAACCCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
65104454 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
65104494 TTAGCCCGG
1 TTAGCCCGG
65104503 GTATCATTCA
Statistics
Matches: 142, Mismatches: 23, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.02
40 136 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:65104422 original size:80 final size:80
Alignment explanation
Indices: 65104295--65104502 Score: 231
Period size: 80 Copynumber: 2.6 Consensus size: 80
65104285 TCTTCGGAAT
* * * * * * *** **
65104295 TTAG-CCGGATATAACCACAAACACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACCCGCAC
65104359 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * *
65104374 TTAGCTCGGATTTAA-CAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACAACCCGCA
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACCCGCA
*
65104438 CGAATGCCTTCGGGTC
65 CAAATGCCTTCGGGTC
* *
65104454 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
65104503 GTATCATTCA
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
79 5 0.05
80 99 0.94
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACCCGCAC
AAATGCCTTCGGGTC
Found at i:65114920 original size:46 final size:47
Alignment explanation
Indices: 65114858--65114950 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 47
65114848 GCATTGGCAC
65114858 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
65114905 TAAGA-AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
65114951 CATTTGGTAA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 41 0.89
47 5 0.11
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:65115139 original size:53 final size:53
Alignment explanation
Indices: 65114957--65115141 Score: 187
Period size: 53 Copynumber: 3.5 Consensus size: 53
65114947 TTGGCATTTG
* * *
65114957 GTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATA-CAT
* * * *
65115011 GTAAGACCATGTC-ATACATGGCATTGATGAGTTACTATAAGGAAAAGG-TCCCAT
1 GTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-CAAGGAT-ACAT
* * * *
65115065 GTAATACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACGAC
1 GTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATAC-AT
* *
65115118 GCAAGACCATGTCAAGACATGGCA
1 GTAAGACCATGCCAAGACATGGCA
65115142 ACGGTAAGTT
Statistics
Matches: 106, Mismatches: 19, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
52 5 0.05
53 45 0.42
54 35 0.33
55 21 0.20
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
GTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGATACAT
Found at i:65115177 original size:108 final size:108
Alignment explanation
Indices: 65114957--65115166 Score: 264
Period size: 108 Copynumber: 2.0 Consensus size: 108
65114947 TTGGCATTTG
* * *
65114957 GTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATG
1 GTAATACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCACGCAAGACCATG
* ** * * *
65115022 TCATACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCAT
66 TCAGACATGGCAACGATAAGTTACAAAAAGGAAAAGGTCCCAT
* * *
65115065 GTAATACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATA-CGACGCAAGACCAT
1 GTAATACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATC-ACGCAAGACCAT
*
65115128 GTCAAGACATGGCAACGGTAAGTT-CAAAAAGGAAAAGGT
65 GTC-AGACATGGCAACGATAAGTTACAAAAAGGAAAAGGT
65115167 TCCCGAGTAA
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
106 1 0.01
107 39 0.45
108 47 0.54
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (108 bp):
GTAATACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCACGCAAGACCATG
TCAGACATGGCAACGATAAGTTACAAAAAGGAAAAGGTCCCAT
Found at i:65115288 original size:17 final size:16
Alignment explanation
Indices: 65115255--65115288 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
65115245 CTTATTTAAT
*
65115255 ATTGAGATTGTAAGTA
1 ATTGAGATTATAAGTA
65115271 ATTGAGATTATCAAGTA
1 ATTGAGATTAT-AAGTA
65115288 A
1 A
65115289 GTATTAAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATTGAGATTATAAGTA
Found at i:65118416 original size:86 final size:86
Alignment explanation
Indices: 65118264--65118423 Score: 234
Period size: 86 Copynumber: 1.9 Consensus size: 86
65118254 ATATCGTACA
* * *
65118264 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCACATGTCGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATGTCCCAGACAGGGT
65118329 CTTACACGAATCACAATTACG
66 CTTACACGAATCACAATTACG
* * *
65118350 ATGCCAATGTTCCAGACATGGTCTTAC-TCGAAATCACATATCGATGCCAATGTCCTAGAC-GTG
1 ATGCCAACGTCCCAGACATGGTCTTACAT-GAAATCACATATCGATGCCAATGTCCCAGACAG-G
65118413 GTCTTACACGA
64 GTCTTACACGA
65118424 GAACACATAT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
85 2 0.03
86 64 0.97
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (86 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATGTCCCAGACAGGGT
CTTACACGAATCACAATTACG
Found at i:65118431 original size:43 final size:42
Alignment explanation
Indices: 65118264--65118434 Score: 191
Period size: 43 Copynumber: 4.0 Consensus size: 42
65118254 ATATCGTACA
* * * *
65118264 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCACATGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAACACATATCG
* * *
65118307 ATGCCACTGTCCCAGACAGGGTCTTACACGAATCACA-ATTACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAACACATA-T-CG
* *
65118350 ATGCCAATGTTCCAGACATGGTCTTACTCGAAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAA-CACATATCG
* *
65118393 ATGCCAATGTCCTAGACGTGGTCTTACACGAGAACACATATC
1 ATGCCAATGTCCCAGACATGGTCTTACACGA-AACACATATC
65118435 AGAAATCCTA
Statistics
Matches: 109, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
42 8 0.07
43 93 0.85
44 7 0.06
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAACACATATCG
Found at i:65118651 original size:28 final size:28
Alignment explanation
Indices: 65118620--65118676 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
65118610 ATTAAAAAAA
65118620 ATAACTGTGTTTATTTGCTTATAAACTT
1 ATAACTGTGTTTATTTGCTTATAAACTT
65118648 ATAACTGTGTTTATTTGCTTATAAACTT
1 ATAACTGTGTTTATTTGCTTATAAACTT
65118676 A
1 A
65118677 CCTTTGACAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.49
Consensus pattern (28 bp):
ATAACTGTGTTTATTTGCTTATAAACTT
Done.