Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 219 of 425
Found at i:66430884 original size:30 final size:30
Alignment explanation
Indices: 66430850--66430910 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
66430840 TCATTAACTC
66430850 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
66430880 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
66430910 A
1 A
66430911 GGCTCGGAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:66434243 original size:30 final size:30
Alignment explanation
Indices: 66434158--66434245 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 30
66434148 TGAGCTAAAA
* *
66434158 TGAGCTAAGCTTTAGC-CCTTAAGCTAAAGT
1 TGAGCTAAGATTTAGCTCC-TAAGCTGAAGT
*
66434188 TGAGCTGAGATTATA-CTCCTAAGCTGAAGT
1 TGAGCTAAGATT-TAGCTCCTAAGCTGAAGT
* * *
66434218 TGAGCTAAGGTTTAGCTCGTGAGCTGAA
1 TGAGCTAAGATTTAGCTCCTAAGCTGAA
66434246 TATAAGCTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
29 2 0.04
30 42 0.88
31 4 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCCTAAGCTGAAGT
Found at i:66435846 original size:2 final size:2
Alignment explanation
Indices: 66435839--66435878 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
66435829 ATTACTTGAA
66435839 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
66435879 GACACTGACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66436936 original size:35 final size:35
Alignment explanation
Indices: 66436825--66437029 Score: 189
Period size: 35 Copynumber: 5.9 Consensus size: 35
66436815 TTCATATAGT
* * * *
66436825 CGAATATAGAAGTTCAATATATCATCACGTGTAAC
1 CGAATATACAAGTTCAATATAACCTCACATGTAAC
* * * * * * **
66436860 CTAA-AGTTCAAGTTCAATAAAACATCTCATATGGC
1 CGAATA-TACAAGTTCAATATAACCTCACATGTAAC
* * *
66436895 CTAATATACAAATTCAATATAATCTCACATGTAAC
1 CGAATATACAAGTTCAATATAACCTCACATGTAAC
* * * *
66436930 CAAATATACAAGTTCAATATAAGCTTACATGTAAT
1 CGAATATACAAGTTCAATATAACCTCACATGTAAC
* *
66436965 CGAAT-TCACAAGTTCAATATAACCTCACATGCAGC
1 CGAATAT-ACAAGTTCAATATAACCTCACATGTAAC
66437000 CGAATATACAAGTTCAATATAACCTCACAT
1 CGAATATACAAGTTCAATATAACCTCACAT
66437030 ATACTTACTT
Statistics
Matches: 136, Mismatches: 30, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
34 2 0.01
35 132 0.97
36 2 0.01
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.28
Consensus pattern (35 bp):
CGAATATACAAGTTCAATATAACCTCACATGTAAC
Found at i:66436963 original size:105 final size:103
Alignment explanation
Indices: 66436827--66437029 Score: 223
Period size: 105 Copynumber: 1.9 Consensus size: 103
66436817 CATATAGTCG
* * * *
66436827 AATATAGAAGTTCAATATATCATCACGTGTAACCTAAAGTT-CAAGTTCAATAAAACATCTCATA
1 AATATACAAGTTCAATATAGCATCACATGTAACC-AAA-TTACAAGTTCAATAAAAC--CTCACA
* *
66436891 TG-GCCTAATATACAAATTCAATATAATCTCACATGTAACCA
62 TGAGCCGAATATACAAATTCAATATAACCTCACATGTAACCA
* * * *
66436932 AATATACAAGTTCAATATAAGC-TTACATGTAATCGAATTCACAAGTTCAATATAACCTCACATG
1 AATATACAAGTTCAATAT-AGCATCACATGTAACCAAATT-ACAAGTTCAATAAAACCTCACATG
*
66436996 CAGCCGAATATACAAGTTCAATATAACCTCACAT
64 -AGCCGAATATACAAATTCAATATAACCTCACAT
66437030 ATACTTACTT
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
103 9 0.11
104 2 0.02
105 69 0.84
106 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (103 bp):
AATATACAAGTTCAATATAGCATCACATGTAACCAAATTACAAGTTCAATAAAACCTCACATGAG
CCGAATATACAAATTCAATATAACCTCACATGTAACCA
Found at i:66440778 original size:31 final size:31
Alignment explanation
Indices: 66440737--66440800 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
66440727 CCTTGTCATA
*
66440737 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
66440768 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
66440799 TT
1 TT
66440801 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:66441036 original size:25 final size:24
Alignment explanation
Indices: 66440994--66441114 Score: 156
Period size: 24 Copynumber: 5.0 Consensus size: 24
66440984 GCTTTATCAT
*
66440994 ATAACTGGAGGCCT-AGCCTCTTTTG
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
66441019 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
*
66441043 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TG
*
66441068 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
66441091 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
66441115 CACTTCCTCC
Statistics
Matches: 86, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
23 20 0.23
24 34 0.40
25 32 0.37
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:66441187 original size:20 final size:20
Alignment explanation
Indices: 66441159--66441207 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
66441149 GCATTTATGA
*
66441159 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
66441179 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
66441199 ACATATCAT
1 ACATATCAT
66441208 ATTTATCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:66442516 original size:27 final size:27
Alignment explanation
Indices: 66442455--66442531 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
66442445 GGCATATTCG
66442455 TCATTTTACCATACAGGGGTATTACGA
1 TCATTTTACCATACAGGGGTATTACGA
* * *
66442482 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAGGGG-TATTACGA
* *
66442509 TCTTTTTACC-TAATAGGGGTATT
1 TCATTTTACCAT-ACAGGGGTATT
66442532 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
26 2 0.05
27 38 0.93
28 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:66442602 original size:27 final size:27
Alignment explanation
Indices: 66442572--66442623 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
66442562 GTAAATCTAC
66442572 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
66442599 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
66442624 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:66442685 original size:27 final size:27
Alignment explanation
Indices: 66442655--66442759 Score: 99
Period size: 27 Copynumber: 3.9 Consensus size: 27
66442645 GTAACTTTGT
66442655 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* * *
66442682 AAAT-TGAGGGTATTTCGGTAATTTCAC
1 AAATCAG-GGGTATTTTGGTAATTTTAC
* * *
66442709 AAACCAGTGGTAATTTGGTAATTTTAC
1 AAATCAGGGGTATTTTGGTAATTTTAC
* *
66442736 AGA-CTA-GGGTATTTTAGTAATTTT
1 AAATC-AGGGGTATTTTGGTAATTTT
66442760 GTAAATCGAG
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
26 17 0.27
27 44 0.71
28 1 0.02
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
AAATCAGGGGTATTTTGGTAATTTTAC
Found at i:66442781 original size:27 final size:27
Alignment explanation
Indices: 66442751--66442905 Score: 197
Period size: 27 Copynumber: 5.8 Consensus size: 27
66442741 AGGGTATTTT
*
66442751 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
66442778 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* **
66442805 AGTAATTCTATAAATTAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
66442832 GGTACTTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
66442859 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
66442886 -GATAATTATGTAAATC-AGGG
1 AG-TAATTCTGTAAATCGAGGG
66442906 GTACTTTGGT
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 5 0.04
27 109 0.96
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:66442908 original size:81 final size:81
Alignment explanation
Indices: 66442759--66442908 Score: 221
Period size: 81 Copynumber: 1.9 Consensus size: 81
66442749 TTAGTAATTT
* *
66442759 TGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATTAAG
1 TGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATAAATCAAG
66442824 GGTAAAACGGTACTTC
66 GGTAAAACGGTACTTC
* * * * *
66442840 TGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAC-GATAATTATGTAAATCAG
1 TGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAG-TAATTATATAAATCAA
66442904 GGGTA
65 GGGTA
66442909 CTTTGGTAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
80 1 0.02
81 60 0.98
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (81 bp):
TGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGTAATTATATAAATCAAG
GGTAAAACGGTACTTC
Found at i:66442931 original size:81 final size:79
Alignment explanation
Indices: 66442741--66442935 Score: 194
Period size: 81 Copynumber: 2.4 Consensus size: 79
66442731 TTTACAGACT
* *
66442741 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 AGGGTAATTTGGTAA-TTT-TAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
* *
66442806 GTAATTCTATAAATTA
64 GTAATTATATAAATCA
*** * * * *
66442822 AGGGTAAAACGGTACTTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAC-
1 AGGGTAATTTGGTAATT-T-TAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
*
66442886 GATAATTATGTAAATCA
64 G-TAATTATATAAATCA
* *
66442903 GGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 AGGGTAATTTGGTAATTTTA-AA-TCGAGGGTA
66442936 TTTCAATAAT
Statistics
Matches: 92, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
79 2 0.02
80 6 0.07
81 84 0.91
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (79 bp):
AGGGTAATTTGGTAATTTTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAGT
AATTATATAAATCA
Found at i:66444047 original size:48 final size:48
Alignment explanation
Indices: 66443982--66444105 Score: 158
Period size: 48 Copynumber: 2.5 Consensus size: 48
66443972 GCATCAGTGA
* * * *
66443982 GATATGTGATTCATGTAAGACCATAGTTCGGCTATGGCATCGATATGT
1 GATATGTGATACGTGTAAGACCATAGCTCGGCTATGGCATCAATATGT
* *
66444030 GATATGTGATCCGTGTAAGACCATAGCTGGGCTATGGCATCAATATGT
1 GATATGTGATACGTGTAAGACCATAGCTCGGCTATGGCATCAATATGT
* *
66444078 GACATGTGATTTATGTGTAAGACCATAG
1 GATATGTGA--TACGTGTAAGACCATAG
66444106 GCATCCATAT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
48 51 0.77
50 15 0.23
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (48 bp):
GATATGTGATACGTGTAAGACCATAGCTCGGCTATGGCATCAATATGT
Found at i:66444159 original size:42 final size:42
Alignment explanation
Indices: 66444105--66444193 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 42
66444095 TAAGACCATA
* * **
66444105 GGCATCCATATGTGAATATGTGTAAGACCATAGCTGGGCTAT
1 GGCATCCATATGTAAAGATGTGTAAGACCATAGCTGAACTAT
*
66444147 GGCAT-CATTATGTAAAGATGTGTAAGACCATAGTTGAACTAT
1 GGCATCCA-TATGTAAAGATGTGTAAGACCATAGCTGAACTAT
66444189 GGCAT
1 GGCAT
66444194 TGAGAAAACG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
41 2 0.05
42 39 0.95
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (42 bp):
GGCATCCATATGTAAAGATGTGTAAGACCATAGCTGAACTAT
Found at i:66447173 original size:16 final size:15
Alignment explanation
Indices: 66447147--66447177 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
66447137 ACTAGATCAG
66447147 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
66447162 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
66447178 GGGCATTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.52, C:0.26, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:66447606 original size:27 final size:28
Alignment explanation
Indices: 66447568--66447680 Score: 162
Period size: 27 Copynumber: 4.2 Consensus size: 28
66447558 GAGGAAGCGT
*
66447568 TCTGGTGGCTCTGCCACAAATATATG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
66447595 TCTGGTGGCTCTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
66447623 TCTGGTGGCTCTGCCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
66447650 TCTGGTGACTCTGTCAC-AATATCTGT-
1 TCTGGTGGCTCTGCCACAAATATCTGTA
66447676 TCTGG
1 TCTGG
66447681 CAGCCATATT
Statistics
Matches: 80, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:66447653 original size:55 final size:53
Alignment explanation
Indices: 66447566--66447680 Score: 169
Period size: 55 Copynumber: 2.1 Consensus size: 53
66447556 TGGAGGAAGC
*
66447566 GTTCTGGTGGCTCTGCCACAAATATATGATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATATGATCTGGTGACTCTGCCAC-AATATCT
* *
66447620 GTTTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCTGTCACAATATCT
1 G-TTCTGGTGGCTCTGCCACAAATATATG-ATCTGGTGACTCTGCCACAATATCT
66447674 GTTCTGG
1 GTTCTGG
66447681 CAGCCATATT
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
53 6 0.11
54 16 0.29
55 34 0.61
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (53 bp):
GTTCTGGTGGCTCTGCCACAAATATATGATCTGGTGACTCTGCCACAATATCT
Found at i:66456217 original size:70 final size:70
Alignment explanation
Indices: 66456141--66456341 Score: 201
Period size: 70 Copynumber: 2.9 Consensus size: 70
66456131 TTATATTATT
* * * * * *
66456141 TCATATGGCAGAATATATAAGTTCAATA-GATCATCACATGTAACCTAATGTTCAAGTTCAATAA
1 TCATATGGCAGAATATACAAATTCAATATAATC-TCACATGTAACCGAATATACAAGTTCAATAA
66456205 AACATC
65 AACATC
* *
66456211 TCATATGGCCGAATATACAAATTCAATATAATCTCACATGTAACCGAATATACAAGTTCAAT-AT
1 TCATATGGCAGAATATACAAATTCAATATAATCTCACATGTAACCGAATATACAAGTTCAATAAA
*
66456275 A-AGC
66 ACATC
* ** * * * * *
66456279 TCAAATGTAATCGAATACACAAGTTCAATATAACCTCACATGCAGCCGAATATACAAGTTCAA
1 TCATATGGCA--GAATATACAAATTCAATATAATCTCACATGTAACCGAATATACAAGTTCAA
66456342 AATAACCTCA
Statistics
Matches: 110, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
68 8 0.07
69 2 0.02
70 97 0.88
71 3 0.03
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.27
Consensus pattern (70 bp):
TCATATGGCAGAATATACAAATTCAATATAATCTCACATGTAACCGAATATACAAGTTCAATAAA
ACATC
Found at i:66456236 original size:35 final size:35
Alignment explanation
Indices: 66456174--66456354 Score: 102
Period size: 35 Copynumber: 5.2 Consensus size: 35
66456164 CAATAGATCA
* * * *
66456174 TCACATGTAACCTAATGTTCAAGTTCAATAAAACATC
1 TCACATG-AACCGAATATACAAATTCAATAAAA-ATC
* * *
66456211 TCATATG-GCCGAATATACAAATTCAAT-ATAATC
1 TCACATGAACCGAATATACAAATTCAATAAAAATC
* * *
66456244 TCACATGTAACCGAATATACAAGTTCAAT-ATAAGC
1 TCACATG-AACCGAATATACAAATTCAATAAAAATC
* * * * * *
66456279 TCAAATGTAATCGAATACACAAGTTCAAT-ATAACC
1 TCACATG-AACCGAATATACAAATTCAATAAAAATC
* * * *
66456314 TCACATGCAGCCGAATATACAAGTTCAA-AATAACC
1 TCACATG-AACCGAATATACAAATTCAATAAAAATC
66456349 TCACAT
1 TCACAT
66456355 ATACTTACTT
Statistics
Matches: 121, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
33 9 0.07
34 2 0.02
35 104 0.86
37 6 0.05
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.27
Consensus pattern (35 bp):
TCACATGAACCGAATATACAAATTCAATAAAAATC
Found at i:66456287 original size:105 final size:104
Alignment explanation
Indices: 66456151--66456354 Score: 232
Period size: 105 Copynumber: 1.9 Consensus size: 104
66456141 TCATATGGCA
* * * * * *** *
66456151 GAATATATAAGTTCAATAGATCATCACATGTAACCTAATGTTCAAGTTCAATAAAACATCTCATA
1 GAATATACAAGTTCAATAAAGCATCAAATGTAACCGAATACACAAGTTCAATAAAAC--CTCACA
* *
66456216 TG-GCCGAATATACAAATTCAATATAATCTCACATGTAACC
64 TGAGCCGAATATACAAATTCAAAATAACCTCACATGTAACC
* *
66456256 GAATATACAAGTTCAATATAAGC-TCAAATGTAATCGAATACACAAGTTCAATATAACCTCACAT
1 GAATATACAAGTTCAATA-AAGCATCAAATGTAACCGAATACACAAGTTCAATAAAACCTCACAT
*
66456320 GCAGCCGAATATACAAGTTCAAAATAACCTCACAT
65 G-AGCCGAATATACAAATTCAAAATAACCTCACAT
66456355 ATACTTACTT
Statistics
Matches: 82, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
103 7 0.09
105 73 0.89
106 2 0.02
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (104 bp):
GAATATACAAGTTCAATAAAGCATCAAATGTAACCGAATACACAAGTTCAATAAAACCTCACATG
AGCCGAATATACAAATTCAAAATAACCTCACATGTAACC
Found at i:66462938 original size:8 final size:7
Alignment explanation
Indices: 66462897--66462937 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
66462887 ATAAAAAAGG
*
66462897 TTTTTTG
1 TTTTTTA
66462904 TTTTTTA
1 TTTTTTA
66462911 TTTTTTA
1 TTTTTTA
66462918 TTTTTTA
1 TTTTTTA
*
66462925 -TTTTAA
1 TTTTTTA
66462931 TTTTTTA
1 TTTTTTA
66462938 AATTTTTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (7 bp):
TTTTTTA
Found at i:66462943 original size:21 final size:20
Alignment explanation
Indices: 66462904--66462958 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
66462894 AGGTTTTTTG
*
66462904 TTTTTT-ATTTTTT-ATTTT
1 TTTTTTAATTTTTTAAATTT
66462922 TTATTTTAATTTTTTAAATTT
1 TT-TTTTAATTTTTTAAATTT
*
66462943 TTTTCATAATTTTTTA
1 TTTT-TTAATTTTTTA
66462959 TTTCAAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 2 0.06
19 4 0.13
20 9 0.29
21 16 0.52
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTTTAATTTTTTAAATTT
Found at i:66462987 original size:15 final size:15
Alignment explanation
Indices: 66462969--66463004 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
66462959 TTTCAAAAAA
66462969 AATTATATATTTTTT
1 AATTATATATTTTTT
66462984 AATT-TA-ATTTTTT
1 AATTATATATTTTTT
66462997 AA-TATATA
1 AATTATATA
66463005 AAAAATTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
12 1 0.05
13 11 0.58
14 3 0.16
15 4 0.21
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
AATTATATATTTTTT
Found at i:66464680 original size:31 final size:31
Alignment explanation
Indices: 66464645--66464706 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
66464635 GGTTGATGAC
*
66464645 TTAATATTGCATCAGATACTCGATTTTGCAT
1 TTAATATTGCATCAGATACTCGATTTAGCAT
66464676 TTAATATTGCATCAGATACTCGATTTAGCAT
1 TTAATATTGCATCAGATACTCGATTTAGCAT
66464707 CATCCATGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (31 bp):
TTAATATTGCATCAGATACTCGATTTAGCAT
Found at i:66468807 original size:21 final size:21
Alignment explanation
Indices: 66468764--66468807 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
66468754 TTTTTATTAT
* *
66468764 AAATTATAAAAAATATTATAA
1 AAATCATAAAAAATATTAAAA
66468785 AAATCATAAAAAAT-TGTAAAA
1 AAATCATAAAAAATAT-TAAAA
66468806 AA
1 AA
66468808 TTGTAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (21 bp):
AAATCATAAAAAATATTAAAA
Found at i:66469135 original size:19 final size:19
Alignment explanation
Indices: 66469113--66469195 Score: 62
Period size: 19 Copynumber: 4.3 Consensus size: 19
66469103 TTTTTATGCA
66469113 TTTTATAATTTTTAATAAT
1 TTTTATAATTTTTAATAAT
*
66469132 TTTTA-AATATATTTTAT-AT
1 TTTTATAAT-T-TTTAATAAT
** *
66469151 TTTTATTAAAATTTAGTAAT
1 TTTTA-TAATTTTTAATAAT
* * *
66469171 TTTTATAACTTTTATTGAT
1 TTTTATAATTTTTAATAAT
66469190 TTTTAT
1 TTTTAT
66469196 TTTTTATAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
18 3 0.06
19 33 0.66
20 12 0.24
21 2 0.04
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTTATAATTTTTAATAAT
Found at i:66470325 original size:13 final size:15
Alignment explanation
Indices: 66470303--66470334 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
66470293 TATCTTATTT
66470303 TATTATTAATTAA-A
1 TATTATTAATTAACA
66470317 TATTA-TAATTAACA
1 TATTATTAATTAACA
66470331 TATT
1 TATT
66470335 TCCTCTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTATTAATTAACA
Found at i:66470978 original size:88 final size:89
Alignment explanation
Indices: 66470815--66471032 Score: 276
Period size: 89 Copynumber: 2.4 Consensus size: 89
66470805 GTTACAGAGA
* *
66470815 GGCTTAATTGCTTTTTTTTGAAAAATTTTGAAGACCTTTTTGATGCATTTTGAAAGTTCAAGTAC
1 GGCTTAATTG-TTTTTTTTGAAAAAGTTTGAAGA-CTTTTTGATGCATTTTGAAAGTTCAAATAC
* *
66470880 TCAATTGAGTG-AAAAAAAAAGTAAG
64 CCAATCGAGTGCAAAAAAAAAGTAAG
* **
66470905 GGCTTAATTGTTTTTTTTGAAAAAGTTTGATGACTTTTTTTTGCATTTTGAAAGTTCAAATACCC
1 GGCTTAATTGTTTTTTTTGAAAAAGTTTGAAGACTTTTTGATGCATTTTGAAAGTTCAAATACCC
* *
66470970 AATCGAGTGCAAAGAAAAAGTAGG
66 AATCGAGTGCAAAAAAAAAGTAAG
*** * * *
66470994 GGCTTAATTACATTTCTTGAAAAAGTTTGAGGGCTTTTT
1 GGCTTAATTGTTTTTTTTGAAAAAGTTTGAAGACTTTTT
66471033 ACACTCTTAA
Statistics
Matches: 112, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
88 36 0.32
89 66 0.59
90 10 0.09
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (89 bp):
GGCTTAATTGTTTTTTTTGAAAAAGTTTGAAGACTTTTTGATGCATTTTGAAAGTTCAAATACCC
AATCGAGTGCAAAAAAAAAGTAAG
Found at i:66475416 original size:21 final size:21
Alignment explanation
Indices: 66475390--66475430 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
66475380 AGACAAGCGA
* *
66475390 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
66475411 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
66475431 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:66477354 original size:16 final size:16
Alignment explanation
Indices: 66477321--66477354 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
66477311 GGAGATTGTT
* *
66477321 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
66477337 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
66477353 AA
1 AA
66477355 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:66478225 original size:22 final size:25
Alignment explanation
Indices: 66478198--66478249 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
66478188 AATATTATTT
66478198 TTAATT-TTTATTAAA-TAAAAA-A
1 TTAATTATTTATTAAATTAAAAATA
*
66478220 TTAATTAATTTTTTAAATTAAAAATA
1 TTAATT-ATTTATTAAATTAAAAATA
66478246 TTAA
1 TTAA
66478250 AAAGTTTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 6 0.24
24 8 0.32
25 6 0.24
26 5 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
TTAATTATTTATTAAATTAAAAATA
Found at i:66478230 original size:26 final size:26
Alignment explanation
Indices: 66478198--66478249 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
66478188 AATATTATTT
66478198 TTAATTTTTATTAAA-TAAAAA-ATTAA
1 TTAA-TTTT-TTAAATTAAAAATATTAA
66478224 TTAATTTTTTAAATTAAAAATATTAA
1 TTAATTTTTTAAATTAAAAATATTAA
66478250 AAAGTTTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 5 0.21
25 10 0.42
26 9 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
TTAATTTTTTAAATTAAAAATATTAA
Found at i:66482257 original size:2 final size:2
Alignment explanation
Indices: 66482250--66482282 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
66482240 ATTTACAAGA
66482250 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
66482283 AATTGGTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:66484512 original size:14 final size:14
Alignment explanation
Indices: 66484493--66484519 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
66484483 GGCAGAGGAA
66484493 AAGAAAATTCACTT
1 AAGAAAATTCACTT
66484507 AAGAAAATTCACT
1 AAGAAAATTCACT
66484520 ATGTCGAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.26
Consensus pattern (14 bp):
AAGAAAATTCACTT
Found at i:66488833 original size:5 final size:5
Alignment explanation
Indices: 66488823--66488855 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
66488813 CCAATTTGTG
66488823 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
66488856 GAACACACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:66490056 original size:26 final size:26
Alignment explanation
Indices: 66490002--66490057 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
66489992 ATTTAATCAC
** *
66490002 ATAACTTCTAAACTTTATTCATTATA
1 ATAACTTCTAAACTTTATGAATTACA
66490028 ATAACTTCTAAACTTTCATGAATT-CA
1 ATAACTTCTAAACTTT-ATGAATTACA
66490054 ATAA
1 ATAA
66490058 AGTAGTTACC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (26 bp):
ATAACTTCTAAACTTTATGAATTACA
Found at i:66493972 original size:2 final size:2
Alignment explanation
Indices: 66493965--66493994 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
66493955 TTAAAAGAAA
66493965 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
66493995 TAGATTTTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:66497904 original size:35 final size:35
Alignment explanation
Indices: 66497860--66497961 Score: 134
Period size: 35 Copynumber: 2.9 Consensus size: 35
66497850 ACTAGAGCAA
*
66497860 CATCATGGAAATGATCTATTGGCTTTATGGAGCGG
1 CATCATGGAAATGATCTATTGGCTTTACGGAGCGG
* * ** *
66497895 CATCATGGAAGTGATCTATTGGCTCTACCAAGTGG
1 CATCATGGAAATGATCTATTGGCTTTACGGAGCGG
66497930 CATCATAGG-AATGATCTATTGGCTTTACGGAG
1 CATCAT-GGAAATGATCTATTGGCTTTACGGAG
66497962 TGATACCATG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
35 54 0.96
36 2 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (35 bp):
CATCATGGAAATGATCTATTGGCTTTACGGAGCGG
Found at i:66500546 original size:46 final size:46
Alignment explanation
Indices: 66500496--66500671 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
66500486 TGGTTGAGCA
66500496 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66500542 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
66500587 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66500635 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66500672 GCGGGTTGCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66500652 original size:93 final size:93
Alignment explanation
Indices: 66500493--66500664 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
66500483 GGATGGTTGA
* *
66500493 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66500558 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
66500586 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
66500651 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
66500665 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66503153 original size:20 final size:20
Alignment explanation
Indices: 66503130--66503181 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
66503120 GTGTGGTTGC
*
66503130 ACACGTCCGTGTGGCTTGGG
1 ACACGGCCGTGTGGCTTGGG
66503150 ACACGGCCGTGTGGCTTGGG
1 ACACGGCCGTGTGGCTTGGG
66503170 ACACGGCCGTGT
1 ACACGGCCGTGT
66503182 CCTTATCCCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.12, C:0.27, G:0.40, T:0.21
Consensus pattern (20 bp):
ACACGGCCGTGTGGCTTGGG
Found at i:66507366 original size:35 final size:38
Alignment explanation
Indices: 66507305--66507387 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 38
66507295 TTTTGAAACC
*
66507305 ATTAACTCTTTTTTCTTTTTGGTTACATGAACTAATTA
1 ATTAACTCTTTTTTCTTTTTGGTTACATGAACCAATTA
66507343 ATTAACTC-TTTTT-TTTTT-GTTACATGAACCAATTA
1 ATTAACTCTTTTTTCTTTTTGGTTACATGAACCAATTA
66507378 ACTTTAACTC
1 A--TTAACTC
66507388 ATTTCACCTA
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
35 17 0.40
36 5 0.12
37 12 0.29
38 8 0.19
ACGTcount: A:0.28, C:0.16, G:0.06, T:0.51
Consensus pattern (38 bp):
ATTAACTCTTTTTTCTTTTTGGTTACATGAACCAATTA
Found at i:66507486 original size:26 final size:26
Alignment explanation
Indices: 66507452--66507515 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
66507442 AAATATTCTT
*
66507452 TAAATTAATAAATATTAATGTATCGA
1 TAAACTAATAAATATTAATGTATCGA
* * * *
66507478 TAAAGTAATAAAATTTTCATTTATCGA
1 TAAACTAAT-AAATATTAATGTATCGA
66507505 TAAACTAATAA
1 TAAACTAATAA
66507516 CCTTGATAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 10 0.31
27 22 0.69
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (26 bp):
TAAACTAATAAATATTAATGTATCGA
Found at i:66517801 original size:28 final size:28
Alignment explanation
Indices: 66517761--66517830 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
66517751 ATAGTAAGTC
*
66517761 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
66517789 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
66517817 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66517831 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:66518392 original size:2 final size:2
Alignment explanation
Indices: 66518385--66518412 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
66518375 GGCATACATT
66518385 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
66518413 GCCGAATGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:66524320 original size:22 final size:22
Alignment explanation
Indices: 66524291--66524348 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
66524281 ACACAGGGGC
* *
66524291 ACACGCCCATGTGGAAGGGACA
1 ACACGCCCGTGTGAAAGGGACA
* * *
66524313 ACATGCCCGTATGAAAGGGGCA
1 ACACGCCCGTGTGAAAGGGACA
66524335 ACACGCCCGTGTGA
1 ACACGCCCGTGTGA
66524349 TCAATTTGAC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.29, C:0.28, G:0.31, T:0.12
Consensus pattern (22 bp):
ACACGCCCGTGTGAAAGGGACA
Found at i:66525593 original size:47 final size:48
Alignment explanation
Indices: 66525489--66525705 Score: 197
Period size: 47 Copynumber: 4.6 Consensus size: 48
66525479 GGTAAGGTGC
* * *
66525489 CGATGCCGTGTCCCAGACACGGTCTTACACTGGCTCAT-ATCTCAA-GT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCAAGGT
* * *
66525536 CGAAGCCATGTCCCAGACATGGTCTTACATTGACTATCATTTCATA-GT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCA-AGGT
* * *
66525584 CGATG-CATGTCCTAGACAT-GTCTTACACTGGCT-TACATCT-AGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CATCTCA-AGGT
* *
66525630 CGATG-CATGT-CCAGACAT-GTCTTACACT-AGC-ACTCGTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTA-TCATCTCAAGGT
66525675 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
66525706 AGTTTACACA
Statistics
Matches: 141, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
45 32 0.23
46 36 0.26
47 56 0.40
48 17 0.12
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCAAGGT
Found at i:66525685 original size:46 final size:45
Alignment explanation
Indices: 66525582--66525707 Score: 139
Period size: 45 Copynumber: 2.7 Consensus size: 45
66525572 TCATTTCATA
* *
66525582 GTCGATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTAGAG
1 GTCGATGCATGTCC-AGACATGTCTTACACTAGCCTACATCTAGAG
* * *
66525628 GCCGATGCATGTCCAGACATGTCTTACACTAGCACT-CGTCTCA-AT
1 GTCGATGCATGTCCAGACATGTCTTACACTAGC-CTACATCT-AGAG
66525673 GTCGATGCCATGTCCCAGACATGGTCTTACACTAG
1 GTCGATG-CATGT-CCAGACAT-GTCTTACACTAG
66525708 TTTACACAAG
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
45 29 0.42
46 20 0.29
47 8 0.12
48 12 0.17
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (45 bp):
GTCGATGCATGTCCAGACATGTCTTACACTAGCCTACATCTAGAG
Found at i:66525700 original size:93 final size:94
Alignment explanation
Indices: 66525489--66525705 Score: 234
Period size: 93 Copynumber: 2.3 Consensus size: 94
66525479 GGTAAGGTGC
* * * *
66525489 CGATGCCGTGTCCCAGACACGGTCTTACACTGGCTCATATCTCAAGTCGAAGCCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGCCGAAGCCATGTCCCAGAC
* *
66525554 ATGGTCTTACATTGACTATCATTTCATAGT
66 ATGGTCTTACATAGAC-ATCATCTCATAGT
* * *
66525584 CGATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACATCT-AGAGGCCGATG-CATGT-CCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCA-A-GCCGAAGCCATGTCCCAG
*
66525644 ACAT-GTCTTACACTAG-CACTCGTCTCA-ATGT
64 ACATGGTCTTACA-TAGACA-TCATCTCATA-GT
66525675 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
66525706 AGTTTACACA
Statistics
Matches: 104, Mismatches: 11, Indels: 16
0.79 0.08 0.12
Matches are distributed among these distances:
90 2 0.02
91 22 0.21
92 24 0.23
93 35 0.34
94 16 0.15
95 5 0.05
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGCCGAAGCCATGTCCCAGAC
ATGGTCTTACATAGACATCATCTCATAGT
Found at i:66529323 original size:28 final size:28
Alignment explanation
Indices: 66529291--66529352 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
66529281 GAAGGTTACA
66529291 CATTTTCTGTTTTTGTTTCTGTAGTTGG
1 CATTTTCTGTTTTTGTTTCTGTAGTTGG
* *
66529319 CATTTTTTGTTTTTGTTTTTGTAGTTGG
1 CATTTTCTGTTTTTGTTTCTGTAGTTGG
66529347 CATTTT
1 CATTTT
66529353 GTGGAATGCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.08, C:0.08, G:0.19, T:0.65
Consensus pattern (28 bp):
CATTTTCTGTTTTTGTTTCTGTAGTTGG
Found at i:66531985 original size:21 final size:23
Alignment explanation
Indices: 66531954--66531995 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
66531944 TTGGGTTCAT
66531954 TTTAGAGCTCACATA-AGCTCAA
1 TTTAGAGCTCACATATAGCTCAA
*
66531976 TTTAG-GCTCAGATATAGCTC
1 TTTAGAGCTCACATATAGCTC
66531996 TATATTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (23 bp):
TTTAGAGCTCACATATAGCTCAA
Found at i:66534991 original size:40 final size:40
Alignment explanation
Indices: 66534896--66535113 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
66534886 TGGATGATAA
* *
66534896 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGATTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
*
66534937 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66534977 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
66535017 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
66535057 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
66535096 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
66535114 TACTTGGCTT
Statistics
Matches: 165, Mismatches: 9, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
38 15 0.09
39 16 0.10
40 106 0.64
41 24 0.15
42 4 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:66540471 original size:77 final size:76
Alignment explanation
Indices: 66540354--66540550 Score: 231
Period size: 77 Copynumber: 2.6 Consensus size: 76
66540344 AATTGTATTC
* * * * *
66540354 TGTTTCAAATAG-AATTCAATTGAACAATCCTATTTTAGGATTTTATTCCTACCGTTTAACAAGA
1 TGTTTCAAATAGAAAAT-AATTGAACAATCTTGTTTCAGGATTTTATTACTACCGTTTAA-AAGA
66540418 TTTTTTT-ATTTT
64 TTTTTTTGATTTT
* * *
66540430 TGTTTCAAATAGAAAATAAATTGAACAATCTTGTTTCAGGATTTTATTATTGCCGTTTAAAGGAT
1 TGTTTCAAATAGAAAAT-AATTGAACAATCTTGTTTCAGGATTTTATTACTACCGTTTAAAAGAT
66540495 TTTTTTGATTTT
65 TTTTTTGATTTT
* *
66540507 TGTTTTAAACAGAAAACTAATTGAACAAT-TCTG-TTCAGGATTTT
1 TGTTTCAAATAGAAAA-TAATTGAACAATCT-TGTTTCAGGATTTT
66540551 TAATTGAACA
Statistics
Matches: 106, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
76 34 0.32
77 71 0.67
78 1 0.01
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.45
Consensus pattern (76 bp):
TGTTTCAAATAGAAAATAATTGAACAATCTTGTTTCAGGATTTTATTACTACCGTTTAAAAGATT
TTTTTGATTTT
Found at i:66540554 original size:27 final size:27
Alignment explanation
Indices: 66540524--66540579 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
66540514 AACAGAAAAC
*
66540524 TAATTGAACAATTCTGTTCAGGATTTT
1 TAATTGAACAATTCTGTTCAAGATTTT
66540551 TAATTGAACAATTCTGTTCAAGATTTT
1 TAATTGAACAATTCTGTTCAAGATTTT
66540578 TA
1 TA
66540580 TTCCTGCTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.45
Consensus pattern (27 bp):
TAATTGAACAATTCTGTTCAAGATTTT
Found at i:66551045 original size:26 final size:26
Alignment explanation
Indices: 66551015--66551070 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
66551005 TGAAATTCCC
66551015 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
66551041 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
66551067 ATCA
1 ATCA
66551071 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:66555108 original size:40 final size:40
Alignment explanation
Indices: 66554970--66555094 Score: 189
Period size: 40 Copynumber: 3.1 Consensus size: 40
66554960 TAGCTACTCG
* * * *
66554970 TTCGGGACATAGCCCGG-TTATAGCAACTCGCATAAACGCC
1 TTCGGGACTTAACCCGGATT-TAGTAACTCGCATAAATGCC
*
66555010 TTCGGGACTTAACCCGGATTTAGTAACTCGTATAAATGCC
1 TTCGGGACTTAACCCGGATTTAGTAACTCGCATAAATGCC
66555050 TTCGGGACTTAACCCGGATTTAGTAACTCGCATAAATGCC
1 TTCGGGACTTAACCCGGATTTAGTAACTCGCATAAATGCC
66555090 TTCGG
1 TTCGG
66555095 ATCCTAGTCC
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 76 0.97
41 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTCGGGACTTAACCCGGATTTAGTAACTCGCATAAATGCC
Found at i:66561584 original size:26 final size:26
Alignment explanation
Indices: 66561554--66561609 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
66561544 TGAAATTCCC
66561554 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
66561580 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
66561606 ATCA
1 ATCA
66561610 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:66566124 original size:37 final size:36
Alignment explanation
Indices: 66566048--66566155 Score: 87
Period size: 37 Copynumber: 2.9 Consensus size: 36
66566038 ATTCCAAAAA
* * *
66566048 TAATATTATTTTAATAGTTTAATATTAAATTATTTT
1 TAATATTATCTTAATAGTTTAATATTAAATTAATGT
* *
66566084 TAATACTTATCTTAATAGTATT-TTATTAATTTAATGT
1 TAATA-TTATCTTAATAGT-TTAATATTAAATTAATGT
* *
66566121 TAATGTGATTATCTTAATA-TTAAAT-TTAATTTAAT
1 TAA--T-ATTATCTTAATAGTTTAATATTAAATTAAT
66566156 ATTTATCTTG
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
36 5 0.08
37 37 0.63
38 4 0.07
39 12 0.20
40 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (36 bp):
TAATATTATCTTAATAGTTTAATATTAAATTAATGT
Found at i:66568423 original size:43 final size:43
Alignment explanation
Indices: 66568319--66568445 Score: 161
Period size: 43 Copynumber: 3.0 Consensus size: 43
66568309 ACATAGGATC
* * *
66568319 CGATATGTGATTTCA-GTAAGACCACGTCTGGGATGTTGGGAT
1 CGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
* **
66568361 C-ATATTTGATTTCGTGTAAGACCTTGTCTGGGACAG-TGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTGGGAC-GTTGGCAT
*
66568403 CGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
66568446 TGTATGAGCT
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
41 11 0.15
42 24 0.34
43 36 0.51
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
CGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:66570531 original size:9 final size:9
Alignment explanation
Indices: 66570517--66570547 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
66570507 ACATGCACCC
66570517 GATGGTGAT
1 GATGGTGAT
66570526 GATGGTGAT
1 GATGGTGAT
*
66570535 GATGATGAT
1 GATGGTGAT
66570544 GATG
1 GATG
66570548 ATCCTGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.26, C:0.00, G:0.42, T:0.32
Consensus pattern (9 bp):
GATGGTGAT
Found at i:66582660 original size:40 final size:40
Alignment explanation
Indices: 66582568--66582679 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 40
66582558 TAACTATGTT
*
66582568 TGGCACTTAGTGTGCGTTTCGAGATAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCGATTCGAGATAGCTTCAGCTATATA
* * ** *
66582608 TAGCATTTAGTGTGCGAATTCGA-ATAGCTTTGGCTATATG
1 TGGCACTTAGTGTGCG-ATTCGAGATAGCTTCAGCTATATA
* * *
66582648 TGGCACTAAGTGTGTGATACTGAGATAGCTTC
1 TGGCACTTAGTGTGCGATTC-GAGATAGCTTC
66582680 GATTTAATGT
Statistics
Matches: 57, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
39 3 0.05
40 42 0.74
41 12 0.21
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGAGATAGCTTCAGCTATATA
Found at i:66591343 original size:15 final size:15
Alignment explanation
Indices: 66591317--66591388 Score: 92
Period size: 15 Copynumber: 4.7 Consensus size: 15
66591307 GTATTAGCGT
66591317 TTTTAGGGGTTTAGGG
1 TTTTA-GGGTTTAGGG
66591333 TTTTAGGGTTTTAGGG
1 TTTTAGGG-TTTAGGG
*
66591349 -TTTAAGGTTTAGGG
1 TTTTAGGGTTTAGGG
* *
66591363 TGTTAAGGTTTAGGG
1 TTTTAGGGTTTAGGG
66591378 TTTTAGGGTTT
1 TTTTAGGGTTT
66591389 TGTGAGCCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
14 7 0.14
15 31 0.62
16 12 0.24
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.47
Consensus pattern (15 bp):
TTTTAGGGTTTAGGG
Found at i:66591386 original size:8 final size:8
Alignment explanation
Indices: 66591317--66591389 Score: 89
Period size: 8 Copynumber: 9.5 Consensus size: 8
66591307 GTATTAGCGT
66591317 TTTTAGGG
1 TTTTAGGG
*
66591325 GTTTAGGG
1 TTTTAGGG
66591333 TTTTAGGG
1 TTTTAGGG
66591341 TTTTAGGG
1 TTTTAGGG
*
66591349 -TTTAAGG
1 TTTTAGGG
66591356 -TTTAGGG
1 TTTTAGGG
* *
66591363 TGTTAAGG
1 TTTTAGGG
66591371 -TTTAGGG
1 TTTTAGGG
66591378 TTTTAGGG
1 TTTTAGGG
66591386 TTTT
1 TTTT
66591390 GTGAGCCCAA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
7 17 0.31
8 38 0.69
ACGTcount: A:0.15, C:0.00, G:0.37, T:0.48
Consensus pattern (8 bp):
TTTTAGGG
Found at i:66612457 original size:2 final size:2
Alignment explanation
Indices: 66612452--66612476 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
66612442 TATATGTGTG
66612452 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
66612477 GTCAAACATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:66622708 original size:18 final size:18
Alignment explanation
Indices: 66622673--66622784 Score: 118
Period size: 18 Copynumber: 6.2 Consensus size: 18
66622663 AGTTTCATTT
* * *
66622673 AGTAACATTCAATCATTC
1 AGTAACAATCAGTTATTC
*
66622691 AGTAACAATTAGTTATTC
1 AGTAACAATCAGTTATTC
*
66622709 AGTAACAATCA-TTTTCTC
1 AGTAACAATCAGTTAT-TC
*
66622727 AGTAGCAATCAGTTATTC
1 AGTAACAATCAGTTATTC
*
66622745 AGTAACAATCAATTATTC
1 AGTAACAATCAGTTATTC
* * *
66622763 AATAACAGTCAGTCATTC
1 AGTAACAATCAGTTATTC
66622781 AGTA
1 AGTA
66622785 CTTTTATTTA
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
17 3 0.04
18 71 0.92
19 3 0.04
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (18 bp):
AGTAACAATCAGTTATTC
Found at i:66622713 original size:36 final size:36
Alignment explanation
Indices: 66622673--66622784 Score: 136
Period size: 36 Copynumber: 3.1 Consensus size: 36
66622663 AGTTTCATTT
* * *
66622673 AGTAACATTCAATCATTCAGTAACAATTAGTTATTC
1 AGTAACAATCAATTATTCAGTAACAATCAGTTATTC
* *
66622709 AGTAACAATC-ATTTTCTCAGTAGCAATCAGTTATTC
1 AGTAACAATCAATTAT-TCAGTAACAATCAGTTATTC
* * *
66622745 AGTAACAATCAATTATTCAATAACAGTCAGTCATTC
1 AGTAACAATCAATTATTCAGTAACAATCAGTTATTC
66622781 AGTA
1 AGTA
66622785 CTTTTATTTA
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
35 3 0.05
36 57 0.89
37 4 0.06
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (36 bp):
AGTAACAATCAATTATTCAGTAACAATCAGTTATTC
Found at i:66624028 original size:17 final size:17
Alignment explanation
Indices: 66624003--66624039 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
66623993 CCTAATTTCC
*
66624003 CTTTCTTTCTTTCTTTT
1 CTTTCTTTCCTTCTTTT
*
66624020 CTTTTTTTCCTTCTTTT
1 CTTTCTTTCCTTCTTTT
66624037 CTT
1 CTT
66624040 CTCTATTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
CTTTCTTTCCTTCTTTT
Found at i:66624088 original size:19 final size:18
Alignment explanation
Indices: 66624066--66624112 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 18
66624056 TATTCTGTTA
*
66624066 CTTTGTTTCTTTTCTATTT
1 CTTTATTTCTTTT-TATTT
66624085 CTTTATTTCTTTTTATTT
1 CTTTATTTCTTTTTATTT
66624103 CATTTATTTC
1 C-TTTATTTC
66624113 ATTTGTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 6 0.23
19 20 0.77
ACGTcount: A:0.11, C:0.15, G:0.02, T:0.72
Consensus pattern (18 bp):
CTTTATTTCTTTTTATTT
Found at i:66624493 original size:20 final size:19
Alignment explanation
Indices: 66624446--66624496 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
66624436 TAATTCTTAT
*
66624446 ACCTAATTAACTTAATTTA
1 ACCTAATTAACTTAATTAA
* *
66624465 AGCTAAATTCACTTAATTAAA
1 ACCT-AATTAACTTAATT-AA
66624486 ACCTAATTAAC
1 ACCTAATTAAC
66624497 CACTCAATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 3 0.12
20 18 0.72
21 4 0.16
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.35
Consensus pattern (19 bp):
ACCTAATTAACTTAATTAA
Found at i:66627235 original size:2 final size:2
Alignment explanation
Indices: 66627228--66627252 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
66627218 CTCTAGCTGG
66627228 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
66627253 CTTTTAGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:66629411 original size:27 final size:26
Alignment explanation
Indices: 66629374--66629540 Score: 103
Period size: 27 Copynumber: 6.3 Consensus size: 26
66629364 AAAATAGTCT
*
66629374 TTTTAC-CTACATGGGTATTCCGATAA
1 TTTTACACTACA-GGGTATTTCGATAA
* *
66629400 TTTTACACTACAAGGTATTTCGGTAA
1 TTTTACACTACAGGGTATTTCGATAA
*
66629426 TTTTACA-AATCAAGGGTATTTCGATAA
1 TTTTACACTA-C-AGGGTATTTCGATAA
* * *
66629453 TTTTACA-AACAAGGGGTATTTTGGTAA
1 TTTTACACTAC-A-GGGTATTTCGATAA
*
66629480 TTTTACA-AATCAAGGGTATTTCTG-TAA
1 TTTTACACTA-C-AGGGTATTTC-GATAA
* * *
66629507 TTTTACA-AATCAGGGGTATTTTGGTAA
1 TTTTACACTA-CA-GGGTATTTCGATAA
66629534 TTTTACA
1 TTTTACA
66629541 AACCGAGGTC
Statistics
Matches: 123, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.01
26 30 0.24
27 88 0.72
28 4 0.03
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.40
Consensus pattern (26 bp):
TTTTACACTACAGGGTATTTCGATAA
Found at i:66629487 original size:54 final size:54
Alignment explanation
Indices: 66629386--66629542 Score: 232
Period size: 54 Copynumber: 2.9 Consensus size: 54
66629376 TTACCTACAT
* * *
66629386 GGGTATTCCGATAATTTTACACTACAA--GGTATTTCGGTAATTTTACAAATCAA
1 GGGTATTTCGATAATTTTACA-AACAAGGGGTATTTTGGTAATTTTACAAATCAA
66629439 GGGTATTTCGATAATTTTACAAACAAGGGGTATTTTGGTAATTTTACAAATCAA
1 GGGTATTTCGATAATTTTACAAACAAGGGGTATTTTGGTAATTTTACAAATCAA
66629493 GGGTATTTCTG-TAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAA
1 GGGTATTTC-GATAATTTTACAAA-CAAGGGGTATTTTGGTAATTTTACAAA
66629543 CCGAGGTCTT
Statistics
Matches: 97, Mismatches: 3, Indels: 7
0.91 0.03 0.07
Matches are distributed among these distances:
52 4 0.04
53 20 0.21
54 71 0.73
55 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (54 bp):
GGGTATTTCGATAATTTTACAAACAAGGGGTATTTTGGTAATTTTACAAATCAA
Found at i:66629541 original size:27 final size:27
Alignment explanation
Indices: 66629397--66629542 Score: 192
Period size: 27 Copynumber: 5.4 Consensus size: 27
66629387 GGTATTCCGA
* *
66629397 TAATTTTAC-ACTACAA-GGTATTTCGG
1 TAATTTTACAAAT-CAAGGGTATTTTGG
* *
66629423 TAATTTTACAAATCAAGGGTATTTCGA
1 TAATTTTACAAATCAAGGGTATTTTGG
66629450 TAATTTTACAAA-CAAGGGGTATTTTGG
1 TAATTTTACAAATCAA-GGGTATTTTGG
66629477 TAATTTTACAAATCAAGGGTATTTCT-G
1 TAATTTTACAAATCAAGGGTATTT-TGG
*
66629504 TAATTTTACAAATCAGGGGTATTTTGG
1 TAATTTTACAAATCAAGGGTATTTTGG
66629531 TAATTTTACAAA
1 TAATTTTACAAA
66629543 CCGAGGTCTT
Statistics
Matches: 109, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
26 16 0.15
27 89 0.82
28 4 0.04
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
TAATTTTACAAATCAAGGGTATTTTGG
Found at i:66632959 original size:18 final size:18
Alignment explanation
Indices: 66632869--66632980 Score: 62
Period size: 18 Copynumber: 6.2 Consensus size: 18
66632859 AGTTTCATTT
* * *
66632869 AGTAACATTCAATCATTC
1 AGTAACAATCAGTTATTC
* * *
66632887 AGTAGCAGTTAGTTATTC
1 AGTAACAATCAGTTATTC
* * * **
66632905 AATAATAATCATTTGCTC
1 AGTAACAATCAGTTATTC
* * *
66632923 AGTAGCAATTAGTTTTTC
1 AGTAACAATCAGTTATTC
*
66632941 AGTAACAATCAATTATTC
1 AGTAACAATCAGTTATTC
* * *
66632959 AATAACAGTCAGTCATTC
1 AGTAACAATCAGTTATTC
66632977 AGTA
1 AGTA
66632981 CTTTTATTTA
Statistics
Matches: 65, Mismatches: 29, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.36
Consensus pattern (18 bp):
AGTAACAATCAGTTATTC
Found at i:66634451 original size:25 final size:25
Alignment explanation
Indices: 66634423--66634517 Score: 154
Period size: 25 Copynumber: 3.8 Consensus size: 25
66634413 CTCTTTTAAT
* *
66634423 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
66634448 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
66634473 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
66634498 AACTGGGGCAAGGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
66634518 AGCACTTCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:66634784 original size:27 final size:27
Alignment explanation
Indices: 66634722--66634863 Score: 178
Period size: 27 Copynumber: 5.3 Consensus size: 27
66634712 GGGGCAAAAT
* * * *
66634722 GGTAATTTTACCCCACAATGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
66634749 GATAATTCTACCCTA-AAGGGATATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* * * *
66634776 GGTATTTCTATCCTACAAAGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
66634803 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
66634830 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
66634857 GGTAATT
1 GGTAATT
66634864 TTACAAACCA
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 4 0.04
27 89 0.92
28 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:66634879 original size:27 final size:27
Alignment explanation
Indices: 66634845--66634963 Score: 143
Period size: 27 Copynumber: 4.4 Consensus size: 27
66634835 TTCTACCCTA
*
66634845 CAAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
66634872 C-AGAGGTATTTTAGTAATTTTAAAAAC
1 CAAG-GGTATTTTGGTAATTTTACAAAC
** *
66634899 CAAGGGTATTTTGGTAATTTTACTGAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
66634926 CGAGGGTATTTTGGTAATTTT-CTAAAC
1 CAAGGGTATTTTGGTAATTTTAC-AAAC
66634953 CAAGGGTATTT
1 CAAGGGTATTT
66634964 CAATAATTTT
Statistics
Matches: 76, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.04
27 71 0.93
28 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:66634879 original size:81 final size:81
Alignment explanation
Indices: 66634721--66634890 Score: 204
Period size: 81 Copynumber: 2.1 Consensus size: 81
66634711 AGGGGCAAAA
* *
66634721 TGGTAATTTTACCCCACAATGGTATCTCGATAATTCTACCCTAAAGGGATATTTCGGTATTTCTA
1 TGGTAATTCTACCCCACAAGGGTATCTCGATAATTCTACCCTAAAGGGATATTTCGGTATTTCTA
**
66634786 TCCTACAAAGGTATTT
66 TCAAACAAAGGTATTT
* *
66634802 TGGTAATTCTACCCTACAAGGGTATTTC-AGTAATTCTACCCTACAAGGG-TATTTCGGTAATTT
1 TGGTAATTCTACCCCACAAGGGTATCTCGA-TAATTCTACCCTA-AAGGGATATTTCGGT-ATTT
*
66634865 -TA-CAAACCAGAGGTATTT
63 CTATCAAA-CAAAGGTATTT
*
66634883 TAGTAATT
1 TGGTAATT
66634891 TTAAAAACCA
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
80 3 0.04
81 65 0.84
82 9 0.12
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (81 bp):
TGGTAATTCTACCCCACAAGGGTATCTCGATAATTCTACCCTAAAGGGATATTTCGGTATTTCTA
TCAAACAAAGGTATTT
Found at i:66634880 original size:54 final size:52
Alignment explanation
Indices: 66634764--66634921 Score: 145
Period size: 54 Copynumber: 2.9 Consensus size: 52
66634754 TTCTACCCTA
* * * * **
66634764 AAGGGATATTTCGGTATTTCTATCCTACAAAGGTATTTTGGTAATTCTACCCTAC
1 AAGGG-TATTTCAGTAATTCTA-CCTACAAGGGTATTTTGGTAATTTTA-CAAAC
*
66634819 AAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTTTACAAAC
1 AAGGGTATTTCAGTAATTCTA-CCTACAAGGGTATTTTGGTAATTTTACAAAC
* * * ***
66634872 CAGAGGTATTTTAGTAATTTTAAAAACCAAGGGTATTTTGGTAATTTTAC
1 AAG-GGTATTTCAGTAATTCTACCTA-CAAGGGTATTTTGGTAATTTTAC
66634922 TGATCGAGGG
Statistics
Matches: 86, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
53 6 0.07
54 75 0.87
55 5 0.06
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (52 bp):
AAGGGTATTTCAGTAATTCTACCTACAAGGGTATTTTGGTAATTTTACAAAC
Found at i:66634903 original size:81 final size:81
Alignment explanation
Indices: 66634818--66634973 Score: 185
Period size: 81 Copynumber: 1.9 Consensus size: 81
66634808 TTCTACCCTA
66634818 CAAGGGTATTTCAGTAATTCTACCCT-A-CAAGGGTATTTCGGTAATTTTAC-AAACC-AGAGGT
1 CAAGGGTATTTCAGTAATTCTA--CTGATCAAGGGTATTTCGGTAATTTT-CTAAACCAAG-GGT
* *
66634879 ATTTTAGTAATTTTAAAAAC
62 ATTTCAATAATTTTAAAAAC
** * * *
66634899 CAAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTCTAAACCAAGGGTATTT
1 CAAGGGTATTTCAGTAATTCTACTGATCAAGGGTATTTCGGTAATTTTCTAAACCAAGGGTATTT
66634964 CAATAATTTT
66 CAATAATTTT
66634974 GTAAATTGAG
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
79 2 0.03
80 2 0.03
81 58 0.91
82 2 0.03
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.38
Consensus pattern (81 bp):
CAAGGGTATTTCAGTAATTCTACTGATCAAGGGTATTTCGGTAATTTTCTAAACCAAGGGTATTT
CAATAATTTTAAAAAC
Found at i:66634934 original size:54 final size:54
Alignment explanation
Indices: 66634845--66634973 Score: 161
Period size: 54 Copynumber: 2.4 Consensus size: 54
66634835 TTCTACCCTA
66634845 CAAGGGTATTTCGGTAATTTTACAAACCAGAGGTATTTTAGTAATTTTAAAAAC
1 CAAGGGTATTTCGGTAATTTTACAAACCAGAGGTATTTTAGTAATTTTAAAAAC
* ** * * **
66634899 CAAGGGTATTTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTCTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAACCAGA-GGTATTTTAGTAATTTTAAAAAC
**
66634953 CAAGGGTATTTCAATAATTTT
1 CAAGGGTATTTCGGTAATTTT
66634974 GTAAATTGAG
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 2 0.03
54 62 0.97
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTCGGTAATTTTACAAACCAGAGGTATTTTAGTAATTTTAAAAAC
Found at i:66635009 original size:81 final size:81
Alignment explanation
Indices: 66634940--66635160 Score: 255
Period size: 81 Copynumber: 2.7 Consensus size: 81
66634930 GGTATTTTGG
** * * *
66634940 TAATTTTCTAAACCAAGGGT-ATTTCAATAATTTTGTAAATTGAGGGTAAAACGGTAATTCTGTA
1 TAATTTTCTAAACCAAGGGTAAAAT-AATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTA
66635004 AATCGAGGGTAAAACGA
65 AATCGAGGGTAAAACGA
* * **
66635021 TAATTTTGTAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAA
1 TAATTTTCTAAACCAAGGGTAAAATAATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAA
* *
66635086 ATCGAGGATAAAACGG
66 ATCGAGGGTAAAACGA
* * * * *** *
66635102 TAATTCTATAAATCGAGGGTAAAATGGCAATTCTATAAATCGAGGGTAAAATGGTAATT
1 TAATTTTCTAAACCAAGGGTAAAATAATAATTCTATAAATCGAGGGTAAAACGGTAATT
66635161 TTACAAATTG
Statistics
Matches: 123, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
81 121 0.98
82 2 0.02
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (81 bp):
TAATTTTCTAAACCAAGGGTAAAATAATAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAA
ATCGAGGGTAAAACGA
Found at i:66635168 original size:27 final size:27
Alignment explanation
Indices: 66634975--66635160 Score: 264
Period size: 27 Copynumber: 6.9 Consensus size: 27
66634965 AATAATTTTG
* *
66634975 TAAATTGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
* * *
66635002 TAAATCGAGGGTAAAACGATAATTTTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
66635029 TAAATCAAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
66635056 TAAATCGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
66635083 TAAATCGAGGATAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
66635110 TAAATCGAGGGTAAAATGGCAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
66635137 TAAATCGAGGGTAAAATGGTAATT
1 TAAATCGAGGGTAAAACGGTAATT
66635161 TTACAAATTG
Statistics
Matches: 142, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTA
Found at i:66636964 original size:19 final size:18
Alignment explanation
Indices: 66636942--66636988 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 18
66636932 TATTCTGTTA
66636942 CTTTGTTTCTTTTCTATTT
1 CTTTGTTTCTTTT-TATTT
*
66636961 CTTTATTTCTTTTTATTT
1 CTTTGTTTCTTTTTATTT
66636979 CATTTGTTTC
1 C-TTTGTTTC
66636989 ATTTGTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.09, C:0.15, G:0.04, T:0.72
Consensus pattern (18 bp):
CTTTGTTTCTTTTTATTT
Found at i:66639260 original size:101 final size:101
Alignment explanation
Indices: 66639084--66639300 Score: 335
Period size: 101 Copynumber: 2.1 Consensus size: 101
66639074 CAATTATTCA
* * * * * *
66639084 AACGTAAGACCATGATTGGACCATGGTAGTGTATATATGTAAGACCATACCTGGGCTATGGCATT
1 AACGTAAGACCATGGTTGGACCATGGAAGTGTATATATGTAAGACCATACCTCGACTAAGACATT
66639149 CTAATGATAAGACCATAACTAGGTTATGACACTATG
66 CTAATGATAAGACCATAACTAGGTTATGACACTATG
* *
66639185 GACGTAAGACCATGGTTGGACCATGGAAGTGTTTATATGTAAGACCATACCTCGACTAAGACATT
1 AACGTAAGACCATGGTTGGACCATGGAAGTGTATATATGTAAGACCATACCTCGACTAAGACATT
* * *
66639250 CTGATGATAAGACCATAACTTGGTTATGGCACTATG
66 CTAATGATAAGACCATAACTAGGTTATGACACTATG
66639286 AACGTAAGACCATGG
1 AACGTAAGACCATGG
66639301 CAGGGCATGA
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 104 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (101 bp):
AACGTAAGACCATGGTTGGACCATGGAAGTGTATATATGTAAGACCATACCTCGACTAAGACATT
CTAATGATAAGACCATAACTAGGTTATGACACTATG
Found at i:66641100 original size:18 final size:18
Alignment explanation
Indices: 66641077--66641115 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
66641067 TACAGAAAAT
*
66641077 TGGGCTCACATGCCCATG
1 TGGGCTCACACGCCCATG
66641095 TGGGCTCACACGCCCATG
1 TGGGCTCACACGCCCATG
66641113 TGG
1 TGG
66641116 CCTACACGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.15, C:0.33, G:0.31, T:0.21
Consensus pattern (18 bp):
TGGGCTCACACGCCCATG
Found at i:66641198 original size:17 final size:18
Alignment explanation
Indices: 66641161--66641198 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
66641151 GCCTAGAATT
*
66641161 CCACACGCTCGTGTGGGC
1 CCACACGCTCGTATGGGC
*
66641179 CCACACGTTCGTAT-GGC
1 CCACACGCTCGTATGGGC
66641196 CCA
1 CCA
66641199 TATGACCCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.16, C:0.39, G:0.26, T:0.18
Consensus pattern (18 bp):
CCACACGCTCGTATGGGC
Found at i:66642341 original size:14 final size:14
Alignment explanation
Indices: 66642322--66642350 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
66642312 TGCCACATGG
66642322 CCGTATGTCACACA
1 CCGTATGTCACACA
66642336 CCGTATGTCACACA
1 CCGTATGTCACACA
66642350 C
1 C
66642351 AGGCGTGTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.38, G:0.14, T:0.21
Consensus pattern (14 bp):
CCGTATGTCACACA
Found at i:66645013 original size:24 final size:24
Alignment explanation
Indices: 66644981--66645029 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
66644971 GAAGATAGAA
66644981 TTTATTCTTAAAATAAATTTTCAC
1 TTTATTCTTAAAATAAATTTTCAC
66645005 TTTATTCTTAAAATAAATTTTCAC
1 TTTATTCTTAAAATAAATTTTCAC
66645029 T
1 T
66645030 ACTTTTTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (24 bp):
TTTATTCTTAAAATAAATTTTCAC
Found at i:66652510 original size:24 final size:24
Alignment explanation
Indices: 66652478--66652588 Score: 213
Period size: 24 Copynumber: 4.6 Consensus size: 24
66652468 AATCTCAAAT
66652478 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
66652502 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
66652526 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
66652550 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
66652574 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
66652589 ACATAATAAG
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 85 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:66652601 original size:24 final size:24
Alignment explanation
Indices: 66652478--66652610 Score: 196
Period size: 24 Copynumber: 5.5 Consensus size: 24
66652468 AATCTCAAAT
*
66652478 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
*
66652502 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
66652526 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATA
*
66652550 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATA
** *
66652574 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCG-ATTTACTATA
66652598 GCACTATGTGTGC
1 GCACTATGTGTGC
66652611 AACGTTTGGT
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
24 97 0.95
25 5 0.05
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATA
Found at i:66658622 original size:3 final size:3
Alignment explanation
Indices: 66658614--66658678 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
66658604 TTTTTGACAC
66658614 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
66658662 ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT
66658679 TGGGTGGTTG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:66664998 original size:39 final size:38
Alignment explanation
Indices: 66664912--66665005 Score: 109
Period size: 39 Copynumber: 2.4 Consensus size: 38
66664902 ACCATCTCCG
* * * *
66664912 TCCACCCCTACACACCACGTGGGGATAAAATCAATCCA
1 TCCAACCCTACACACCAAGTAGGGATAAAATCAACCCA
* *
66664950 CCCAGCCCTACACACCAAGTATAGGGAT-AAATCAACCCA
1 TCCAACCCTACACACCAAG--TAGGGATAAAATCAACCCA
66664989 TCCAACCCTACACACCA
1 TCCAACCCTACACACCA
66665006 TAAGGTACCG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 16 0.34
39 25 0.53
40 6 0.13
ACGTcount: A:0.36, C:0.39, G:0.11, T:0.14
Consensus pattern (38 bp):
TCCAACCCTACACACCAAGTAGGGATAAAATCAACCCA
Found at i:66678649 original size:40 final size:40
Alignment explanation
Indices: 66678594--66678675 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
66678584 ATATAAGATT
66678594 TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCATTG
1 TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCATTG
* *
66678634 TTTCCTATGCAATTTATCACCTTTTTACTTAAATTCGTTG
1 TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCATTG
66678674 TT
1 TT
66678676 AAAACTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.23, C:0.20, G:0.07, T:0.50
Consensus pattern (40 bp):
TTTCCTATGCAATTTATCACCGTTTTACTTAAATTCATTG
Found at i:66680776 original size:12 final size:12
Alignment explanation
Indices: 66680759--66680826 Score: 59
Period size: 12 Copynumber: 5.5 Consensus size: 12
66680749 AATAATAAAT
66680759 AATATATGATAA
1 AATATATGATAA
66680771 AATATATGATAA
1 AATATATGATAA
*
66680783 AGATA-AAGATAA
1 A-ATATATGATAA
* *
66680795 ACA-ACATAATAAA
1 A-ATATATGAT-AA
66680808 TAATATATGATAA
1 -AATATATGATAA
66680821 AATATA
1 AATATA
66680827 AATAAATAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
11 1 0.02
12 30 0.67
13 8 0.18
14 6 0.13
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (12 bp):
AATATATGATAA
Found at i:66680795 original size:38 final size:37
Alignment explanation
Indices: 66680752--66680837 Score: 95
Period size: 38 Copynumber: 2.3 Consensus size: 37
66680742 AATTTTTAAT
* *
66680752 AATAAATAATAT-ATGATAAAATATATGATAAAGATA-A
1 AATAAATAATATAAT-AAATAATATATGATAAA-ATATA
* *
66680789 AGATAAACAACATAATAAATAATATATGATAAAATATA
1 A-ATAAATAATATAATAAATAATATATGATAAAATATA
66680827 AATAAATAATA
1 AATAAATAATA
66680838 GATAATGTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
37 12 0.30
38 26 0.65
39 2 0.05
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (37 bp):
AATAAATAATATAATAAATAATATATGATAAAATATA
Found at i:66680963 original size:25 final size:23
Alignment explanation
Indices: 66680935--66680990 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
66680925 ATGTTTATAG
*
66680935 TAAAATAAATAATATATAAAATATT
1 TAAAATAAATAA-ATA-AAAAAATT
*
66680960 TAAATTAAATAAATAAAAAAATT
1 TAAAATAAATAAATAAAAAAATT
66680983 TAGAAATA
1 TA-AAATA
66680991 TATGAAAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 9 0.33
24 7 0.26
25 11 0.41
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (23 bp):
TAAAATAAATAAATAAAAAAATT
Found at i:66681660 original size:17 final size:18
Alignment explanation
Indices: 66681638--66681675 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
66681628 GTATGTATTG
66681638 AAAAAAAAAC-AGAAACA
1 AAAAAAAAACAAGAAACA
* *
66681655 AAAAAATAACAATAAACA
1 AAAAAAAAACAAGAAACA
66681673 AAA
1 AAA
66681676 TATCACCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.82, C:0.11, G:0.03, T:0.05
Consensus pattern (18 bp):
AAAAAAAAACAAGAAACA
Found at i:66682292 original size:17 final size:17
Alignment explanation
Indices: 66682270--66682302 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
66682260 TAAATGGAAT
*
66682270 GTTTAATTTTATTTTTC
1 GTTTAATTTCATTTTTC
66682287 GTTTAATTTCATTTTT
1 GTTTAATTTCATTTTT
66682303 AATTTTTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.70
Consensus pattern (17 bp):
GTTTAATTTCATTTTTC
Found at i:66682572 original size:80 final size:79
Alignment explanation
Indices: 66682450--66682599 Score: 219
Period size: 80 Copynumber: 1.9 Consensus size: 79
66682440 CCCCGTTGAA
* **
66682450 TACAGAGACGCCCAAATCATCTTGAATCAGCCTTGATGAAGGTCAGATCTACTAATGTCTTCGAT
1 TACAGAGACGCCCAAATCATCTTGAATCAGCCTCGACAAAGGTCAGATCTACT-ATGTCTTCGAT
66682515 TTGCTCTCTGTCCAT
65 TTGCTCTCTGTCCAT
* * * * *
66682530 TACAGAGATGCCCAAATCATCTTGGATCTGTCTCGACAAAGGTCAGATCTGCTATGTCTTCGATT
1 TACAGAGACGCCCAAATCATCTTGAATCAGCCTCGACAAAGGTCAGATCTACTATGTCTTCGATT
66682595 TGCTC
66 TGCTC
66682600 CCCATCAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (79 bp):
TACAGAGACGCCCAAATCATCTTGAATCAGCCTCGACAAAGGTCAGATCTACTATGTCTTCGATT
TGCTCTCTGTCCAT
Found at i:66682699 original size:44 final size:44
Alignment explanation
Indices: 66682651--66682744 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
66682641 CTCCCCATCG
* * *
66682651 AATACGGAGATGCCAATTCTG-TCATCTTGGATCTGCTCTCTTAA
1 AATACAGAGATGCCAAATCTGCT-ATCTTCGATCTGCTCTCTTAA
* *
66682695 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
1 AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTTAA
66682739 AATACA
1 AATACA
66682745 TGTAACACCC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 43 0.98
45 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (44 bp):
AATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTTAA
Found at i:66684721 original size:40 final size:40
Alignment explanation
Indices: 66684630--66684820 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
66684620 TGGATGAAAA
* ** * *
66684630 CCGGGCTAAGTCCCGAAGGCATCTGCACTAGTGACT-AAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
66684669 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
66684709 CCGGGATAAGTCCCAAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
66684749 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
66684789 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
66684821 AGTTATATCC
Statistics
Matches: 136, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 31 0.23
40 103 0.76
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:66686946 original size:35 final size:34
Alignment explanation
Indices: 66686903--66686974 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 34
66686893 ACACATTCTT
66686903 TATTTCGTCAGATCAATCTCACATAAATAATATA
1 TATTTCGTCAGATCAATCTCACATAAATAATATA
66686937 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATT-TCGTCAGATCAATCTCACATAAATAATATA
66686972 TAT
1 TAT
66686975 ATCACATACC
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 4 0.11
35 33 0.89
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (34 bp):
TATTTCGTCAGATCAATCTCACATAAATAATATA
Found at i:66692149 original size:40 final size:40
Alignment explanation
Indices: 66692104--66692233 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
66692094 CGGAATACAA
66692104 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
66692144 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
66692184 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
66692224 CCGGATATAA
1 CCGGATATAA
66692234 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:66700199 original size:40 final size:40
Alignment explanation
Indices: 66700154--66700283 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
66700144 CGGAATACAA
66700154 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
66700194 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
66700234 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
66700274 CCGGATATAA
1 CCGGATATAA
66700284 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:66702191 original size:28 final size:28
Alignment explanation
Indices: 66702157--66702288 Score: 95
Period size: 29 Copynumber: 4.6 Consensus size: 28
66702147 ACTGACCGAT
66702157 CTCGCACACATAGTGCTCGGTTGA-AGAA
1 CTCGCACACATAGTGCTCGGTT-ACAGAA
* * ** * *
66702185 CTTGCACACACAGTGCCTCAATTACCGAT
1 CTCGCACACATAGTG-CTCGGTTACAGAA
*
66702214 CTCGCACACATAGTGCTCGGTTAAAGGAA
1 CTCGCACACATAGTGCTCGGTTACA-GAA
* * * ** * *
66702243 TTCACACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTG-CTCGGTTACAGAA
66702272 CTCGCACACATAGTGCT
1 CTCGCACACATAGTGCT
66702289 TAGTTAAAGG
Statistics
Matches: 76, Mismatches: 24, Indels: 8
0.70 0.22 0.07
Matches are distributed among these distances:
28 22 0.29
29 48 0.63
30 6 0.08
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (28 bp):
CTCGCACACATAGTGCTCGGTTACAGAA
Found at i:66702222 original size:29 final size:29
Alignment explanation
Indices: 66702188--66702287 Score: 96
Period size: 29 Copynumber: 3.4 Consensus size: 29
66702178 TGAAGAACTT
66702188 GCACACACAGTGCCTCAATTACCGATCTC
1 GCACACACAGTGCCTCAATTACCGATCTC
* ** **
66702217 GCACACATAGTG-CTCGGTTAAAGGAAT-TC
1 GCACACACAGTGCCTCAATT-ACCG-ATCTC
* *
66702246 ACACACACAGTGCCTCAATTACTGATCTC
1 GCACACACAGTGCCTCAATTACCGATCTC
*
66702275 GCACACATAGTGC
1 GCACACACAGTGC
66702288 TTAGTTAAAG
Statistics
Matches: 54, Mismatches: 13, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
28 7 0.13
29 40 0.74
30 7 0.13
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (29 bp):
GCACACACAGTGCCTCAATTACCGATCTC
Found at i:66702275 original size:58 final size:57
Alignment explanation
Indices: 66702151--66702319 Score: 259
Period size: 58 Copynumber: 2.9 Consensus size: 57
66702141 GTGCCCACTG
*
66702151 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTTGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTCAATT
*
66702208 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCACACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATT-GCACACACAGTGCCTCAATT
* **
66702266 ACTGATCTCGCACACATAGTGCTTAGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAA-TTGCACACACAGTGCCTC
66702320 TAATCATTCG
Statistics
Matches: 103, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
57 32 0.31
58 69 0.67
59 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (57 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTGCACACACAGTGCCTCAATT
Found at i:66702534 original size:43 final size:43
Alignment explanation
Indices: 66702473--66702755 Score: 467
Period size: 43 Copynumber: 6.6 Consensus size: 43
66702463 CCTTGCTCTA
** * *
66702473 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCTGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
66702516 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
66702559 ATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
66702602 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
66702645 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
66702688 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
66702731 ATCACCGGCACGAAGCCTGCTAGGC
1 ATCACCGGCACGAAGCCTGCTAGGC
66702756 TACACATCAC
Statistics
Matches: 228, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 228 1.00
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:66702703 original size:129 final size:129
Alignment explanation
Indices: 66702473--66702809 Score: 475
Period size: 129 Copynumber: 2.7 Consensus size: 129
66702463 CCTTGCTCTA
** **
66702473 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCTGAATACACATCACCGGCACGAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCAAATACACATCACCGGCACGAAGCCTGCTA
* *
66702538 GGCACGAAGGCCCGAATACATATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
66 GGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
66702602 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACATATCATCGGCACGAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCAAATACACATCACCGGCACGAAGCCTGCTA
* *
66702667 GGCACGAAGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
66 GGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
66702731 ATCACCGGCACGAAGCCTGCT----A-G--G---C---TACACATCACCGGCACGAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCAAATACACATCACCGGCACGAAGCCTGCTA
*
66702783 GGCACGAAGGCCCTAATACACATCACC
66 GGCACGAAGGCCCGAATACACATCACC
66702810 GAGTTTCATG
Statistics
Matches: 193, Mismatches: 15, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
116 50 0.26
119 1 0.01
122 1 0.01
124 1 0.01
125 1 0.01
129 139 0.72
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.12
Consensus pattern (129 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGACCCAAATACACATCACCGGCACGAAGCCTGCTA
GGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:66702762 original size:30 final size:30
Alignment explanation
Indices: 66702726--66702785 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
66702716 AAGGCCCGAA
66702726 TACACATCACCGGCACGAAGCCTGCTAGGC
1 TACACATCACCGGCACGAAGCCTGCTAGGC
66702756 TACACATCACCGGCACGAAGCCTGCTAGGC
1 TACACATCACCGGCACGAAGCCTGCTAGGC
66702786 ACGAAGGCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.37, G:0.23, T:0.13
Consensus pattern (30 bp):
TACACATCACCGGCACGAAGCCTGCTAGGC
Found at i:66704245 original size:35 final size:35
Alignment explanation
Indices: 66704206--66704278 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
66704196 ACACATTCTT
66704206 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
66704241 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
66704276 TAT
1 TAT
66704279 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:66707121 original size:44 final size:44
Alignment explanation
Indices: 66707058--66707225 Score: 241
Period size: 44 Copynumber: 3.8 Consensus size: 44
66707048 TCGGGCTGTT
*
66707058 ACAATACAGAGATGCCAAATCTGCTATCTTTGATCTGTTCTCTG
1 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTTCTCTG
* *
66707102 ACAATACAGAGATGCCAAATCTGCTATCTTTGATCTGCTCTCTG
1 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTTCTCTG
* *
66707146 ACAATACAGAGATGCCAAATCTGTTACCTTCGAT-TCGCTT-TCTG
1 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCT-G-TTCTCTG
* *
66707190 ACAATACAAAGATGCCAAATCTTCTATCTTCGATCT
1 ACAATACAGAGATGCCAAATCTGCTATCTTCGATCT
66707226 TGTAACACCC
Statistics
Matches: 112, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
43 1 0.01
44 109 0.97
45 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.32
Consensus pattern (44 bp):
ACAATACAGAGATGCCAAATCTGCTATCTTCGATCTGTTCTCTG
Found at i:66708761 original size:40 final size:39
Alignment explanation
Indices: 66708696--66708830 Score: 180
Period size: 40 Copynumber: 3.4 Consensus size: 39
66708686 CGGATGTAAC
* * *
66708696 AACCAGCACGAATGCCTTCGAGACTTAACCTAGTAATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACC-AGTTATAAT
* * *
66708736 AACTCGCACGAATGCCTTCGGGACTTAGCCCGATTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCAG-TTATAAT
*
66708776 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAA-CCAGTTATAAT
66708816 AACCCGCACGAATGC
1 AACCCGCACGAATGC
66708831 TGTGCACATA
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 80 0.95
41 3 0.04
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (39 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCAGTTATAAT
Found at i:66720055 original size:181 final size:181
Alignment explanation
Indices: 66719751--66720111 Score: 668
Period size: 181 Copynumber: 2.0 Consensus size: 181
66719741 AGTTTTTAAT
*
66719751 CCTTGATTTTCCTTCTCTAGGGCCTGATTACGTGACTACATCTCTTCGAACTTCTTCTCCCAATA
1 CCTTGATTTTCCTTCTCTAGGGCCTAATTACGTGACTACATCTCTTCGAACTTCTTCTCCCAATA
*
66719816 CTCGGCTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTACTCTGAAGATCTCCCTAATCCGA
66 CTCGGCTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTACTCTAAAGATCTCCCTAATCCGA
66719881 CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCTA
131 CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCTA
* *
66719932 CCTTGATTTTCCTTCTCTAGGGCCTAATTACGTGACTGCATCTCTTGGAACTTCTTCTCCCAATA
1 CCTTGATTTTCCTTCTCTAGGGCCTAATTACGTGACTACATCTCTTCGAACTTCTTCTCCCAATA
* *
66719997 CTCGGCTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCTACTGCTCTAAAGATCTCCCTAATCCGA
66 CTCGGCTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTACTCTAAAGATCTCCCTAATCCGA
66720062 CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCT
131 CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCT
66720112 CAATCTTTCT
Statistics
Matches: 174, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
181 174 1.00
ACGTcount: A:0.17, C:0.30, G:0.14, T:0.39
Consensus pattern (181 bp):
CCTTGATTTTCCTTCTCTAGGGCCTAATTACGTGACTACATCTCTTCGAACTTCTTCTCCCAATA
CTCGGCTTTGGCTCTTTCTTCTTGAATCTCTTGCTGCCACTACTCTAAAGATCTCCCTAATCCGA
CCCTTTTCAACGTTACCTGGGCCTTCTTCTAGTGCGTCTTTAAATAATCTA
Found at i:66723435 original size:4 final size:4
Alignment explanation
Indices: 66723426--66723482 Score: 71
Period size: 4 Copynumber: 14.0 Consensus size: 4
66723416 GTTTATAGTA
* *
66723426 AAAT AAAT -AAT ATAT AAAAT ATAT AAAAT AAAT AAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT -AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT
66723475 AAAT AAAT
1 AAAT AAAT
66723483 TTAGAAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
3 3 0.07
4 37 0.80
5 6 0.13
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:66723445 original size:16 final size:15
Alignment explanation
Indices: 66723424--66723497 Score: 71
Period size: 16 Copynumber: 4.9 Consensus size: 15
66723414 ATGTTTATAG
66723424 TAAAATAAATAATATA
1 TAAAATAAATAA-ATA
*
66723440 TAAAATATATAAA-A
1 TAAAATAAATAAATA
66723454 T-AAATAAATAAATA
1 TAAAATAAATAAATA
* *
66723468 AATAAATAAATAAATT
1 TA-AAATAAATAAATA
*
66723484 TAGAAATATATAAA
1 TA-AAATAAATAAA
66723498 AAAGGATTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
13 10 0.21
14 3 0.06
15 1 0.02
16 34 0.71
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.30
Consensus pattern (15 bp):
TAAAATAAATAAATA
Found at i:66724791 original size:17 final size:17
Alignment explanation
Indices: 66724769--66724803 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
66724759 TTAAGTGGAC
*
66724769 TGTTTAATTTTATTTTT
1 TGTTTAATTTCATTTTT
66724786 TGTTTAATTTCATTTTT
1 TGTTTAATTTCATTTTT
66724803 T
1 T
66724804 AATTTTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.74
Consensus pattern (17 bp):
TGTTTAATTTCATTTTT
Done.