Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 221 of 425
Found at i:67020392 original size:190 final size:190
Alignment explanation
Indices: 67020069--67020448 Score: 760
Period size: 190 Copynumber: 2.0 Consensus size: 190
67020059 TCCTAGATGA
67020069 ATAGATAAGTAGCTATGGTGTGCCTCATGCACAATCTTCTGAATGAGTTTTGAATTTATCGGTAT
1 ATAGATAAGTAGCTATGGTGTGCCTCATGCACAATCTTCTGAATGAGTTTTGAATTTATCGGTAT
67020134 GCATATTCTATTTCAGAACCTTAAACAATCATCAGTTCAAATCTGAAACTCTGAATCAGGGATGT
66 GCATATTCTATTTCAGAACCTTAAACAATCATCAGTTCAAATCTGAAACTCTGAATCAGGGATGT
67020199 TCTCACATTGAATCCGTTTAACTTGTAATTCATGGTCATCTTTCTGAGCTTCACAGATTT
131 TCTCACATTGAATCCGTTTAACTTGTAATTCATGGTCATCTTTCTGAGCTTCACAGATTT
67020259 ATAGATAAGTAGCTATGGTGTGCCTCATGCACAATCTTCTGAATGAGTTTTGAATTTATCGGTAT
1 ATAGATAAGTAGCTATGGTGTGCCTCATGCACAATCTTCTGAATGAGTTTTGAATTTATCGGTAT
67020324 GCATATTCTATTTCAGAACCTTAAACAATCATCAGTTCAAATCTGAAACTCTGAATCAGGGATGT
66 GCATATTCTATTTCAGAACCTTAAACAATCATCAGTTCAAATCTGAAACTCTGAATCAGGGATGT
67020389 TCTCACATTGAATCCGTTTAACTTGTAATTCATGGTCATCTTTCTGAGCTTCACAGATTT
131 TCTCACATTGAATCCGTTTAACTTGTAATTCATGGTCATCTTTCTGAGCTTCACAGATTT
67020449 GTTGAAGAAA
Statistics
Matches: 190, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
190 190 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (190 bp):
ATAGATAAGTAGCTATGGTGTGCCTCATGCACAATCTTCTGAATGAGTTTTGAATTTATCGGTAT
GCATATTCTATTTCAGAACCTTAAACAATCATCAGTTCAAATCTGAAACTCTGAATCAGGGATGT
TCTCACATTGAATCCGTTTAACTTGTAATTCATGGTCATCTTTCTGAGCTTCACAGATTT
Found at i:67026691 original size:22 final size:22
Alignment explanation
Indices: 67026666--67026718 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
67026656 GAGTTACTAT
*
67026666 TTTAAGGTTTATGGATTATGGA
1 TTTAGGGTTTATGGATTATGGA
* * *
67026688 TTTAGGGATTATGGTTTATGGT
1 TTTAGGGTTTATGGATTATGGA
67026710 TTTAGGGTT
1 TTTAGGGTT
67026719 GGGGTTTAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
TTTAGGGTTTATGGATTATGGA
Found at i:67026696 original size:15 final size:14
Alignment explanation
Indices: 67026671--67026705 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
67026661 ACTATTTTAA
*
67026671 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
67026685 GGATTTAGGGATTAT
1 GG-TTTAGGGATTAT
67026700 GGTTTA
1 GGTTTA
67026706 TGGTTTTAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:67026709 original size:7 final size:7
Alignment explanation
Indices: 67026618--67026797 Score: 69
Period size: 7 Copynumber: 25.3 Consensus size: 7
67026608 ATTTAGGGTC
*
67026618 TATGGTA
1 TATGGTT
67026625 TATGGTT
1 TATGGTT
*
67026632 TAGGGTT
1 TATGGTT
*
67026639 TAAGGTT
1 TATGGTT
*
67026646 TAAGGTT
1 TATGGTT
*
67026653 TAAGAGTT
1 TATG-GTT
67026661 ACTAT--TT
1 --TATGGTT
*
67026668 TAAGGTT
1 TATGGTT
*
67026675 TATGGAT
1 TATGGTT
67026682 TATGGATT
1 TATGG-TT
* *
67026690 TAGGGAT
1 TATGGTT
67026697 TATGGTT
1 TATGGTT
67026704 TATGGTT
1 TATGGTT
*
67026711 T-TAGGGT
1 TAT-GGTT
**
67026718 TGGGGTT
1 TATGGTT
* *
67026725 TAAGGTC
1 TATGGTT
* *
67026732 TAGGGGT
1 TATGGTT
* *
67026739 TAGGGGT
1 TATGGTT
*
67026746 TATGGGT
1 TATGGTT
67026753 TATGGGTT
1 TAT-GGTT
*
67026761 TAGGGTT
1 TATGGTT
*
67026768 TATGGGT
1 TATGGTT
*
67026775 TATGTTT
1 TATGGTT
*
67026782 TATGATT
1 TATGGTT
*
67026789 TAAGGTT
1 TATGGTT
67026796 TA
1 TA
67026798 AGGGATAAGG
Statistics
Matches: 133, Mismatches: 31, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
5 2 0.02
6 1 0.01
7 115 0.86
8 13 0.10
10 2 0.02
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.45
Consensus pattern (7 bp):
TATGGTT
Found at i:67026824 original size:71 final size:71
Alignment explanation
Indices: 67026671--67026824 Score: 168
Period size: 71 Copynumber: 2.2 Consensus size: 71
67026661 ACTATTTTAA
* * * ** ** *
67026671 GGTTTATGGATTATGGATTTAGGGATTATGGTTTATGGTTTTAGGGTTGGGGTTTAAGGTCTAGG
1 GGTTTATGGGTTATGGATTTAGGGATTATGGGTTATGGTTTTAGAGTTAAGGTTTAAGGGATAAG
67026736 GGTTAG
66 GGTTAG
* * * *
67026742 GGGTTATGGGTTATGGGTTTAGGGTTTATGGGTTAT-GTTTTATGATTTAAGGTTTAAGGGATAA
1 GGTTTATGGGTTATGGATTTAGGGATTATGGGTTATGGTTTTA-GAGTTAAGGTTTAAGGGATAA
67026806 GGGTTAG
65 GGGTTAG
67026813 GAGTTTA-GGGTT
1 G-GTTTATGGGTT
67026825 TAGATTAATA
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
70 6 0.09
71 58 0.85
72 4 0.06
ACGTcount: A:0.19, C:0.01, G:0.38, T:0.42
Consensus pattern (71 bp):
GGTTTATGGGTTATGGATTTAGGGATTATGGGTTATGGTTTTAGAGTTAAGGTTTAAGGGATAAG
GGTTAG
Found at i:67026825 original size:7 final size:7
Alignment explanation
Indices: 67026688--67026827 Score: 63
Period size: 7 Copynumber: 19.7 Consensus size: 7
67026678 GGATTATGGA
67026688 TTTAGGG
1 TTTAGGG
* *
67026695 ATTATGG
1 TTTAGGG
*
67026702 TTTATGGT
1 TTTA-GGG
67026710 TTTAGGG
1 TTTAGGG
*
67026717 -TTGGGG
1 TTTAGGG
*
67026723 TTTAAGG
1 TTTAGGG
*
67026730 TCTAGGG
1 TTTAGGG
*
67026737 GTTAGGG
1 TTTAGGG
*
67026744 GTTATGGG
1 TTTA-GGG
67026752 -TTATGGG
1 TTTA-GGG
67026759 TTTAGGG
1 TTTAGGG
67026766 TTTATGGG
1 TTTA-GGG
* *
67026774 -TTATGT
1 TTTAGGG
* *
67026780 TTTATGA
1 TTTAGGG
*
67026787 TTTAAGG
1 TTTAGGG
67026794 TTTAAGGG
1 TTT-AGGG
* *
67026802 ATAAGGG
1 TTTAGGG
67026809 -TTAGGAG
1 TTTAGG-G
67026816 TTTAGGG
1 TTTAGGG
67026823 TTTAG
1 TTTAG
67026828 ATTAATAATT
Statistics
Matches: 102, Mismatches: 22, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
6 10 0.10
7 69 0.68
8 23 0.23
ACGTcount: A:0.19, C:0.01, G:0.38, T:0.42
Consensus pattern (7 bp):
TTTAGGG
Found at i:67027728 original size:20 final size:20
Alignment explanation
Indices: 67027700--67027739 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
67027690 ACCCTTTTAT
67027700 CCCCAAATTTTCCCCCTAAA
1 CCCCAAATTTTCCCCCTAAA
*
67027720 CCCCTAATTTTCCCCCTAAA
1 CCCCAAATTTTCCCCCTAAA
67027740 ATCATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.45, G:0.00, T:0.28
Consensus pattern (20 bp):
CCCCAAATTTTCCCCCTAAA
Found at i:67030569 original size:31 final size:31
Alignment explanation
Indices: 67030529--67030598 Score: 113
Period size: 31 Copynumber: 2.3 Consensus size: 31
67030519 AACCCTTCCT
*
67030529 GCATTAAATCCAACCAAAAACAACAAATATA
1 GCATAAAATCCAACCAAAAACAACAAATATA
* *
67030560 GCATAAAATCCAACCAAAAACAGCAAATGTA
1 GCATAAAATCCAACCAAAAACAACAAATATA
67030591 GCATAAAA
1 GCATAAAA
67030599 AATACAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.57, C:0.21, G:0.07, T:0.14
Consensus pattern (31 bp):
GCATAAAATCCAACCAAAAACAACAAATATA
Found at i:67030612 original size:33 final size:31
Alignment explanation
Indices: 67030529--67030614 Score: 82
Period size: 31 Copynumber: 2.7 Consensus size: 31
67030519 AACCCTTCCT
* * *
67030529 GCATTAAATCCAACCAAAAACAACAAATATA
1 GCATAAAATACAACAAAAAACAACAAATATA
* * * *
67030560 GCATAAAATCCAACCAAAAACAGCAAATGTA
1 GCATAAAATACAACAAAAAACAACAAATATA
*
67030591 GCATAAAAAATACAATAAAAAACA
1 GCAT--AAAATACAACAAAAAACA
67030615 TTAAATCTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 32 0.68
33 15 0.32
ACGTcount: A:0.60, C:0.20, G:0.06, T:0.14
Consensus pattern (31 bp):
GCATAAAATACAACAAAAAACAACAAATATA
Found at i:67034678 original size:18 final size:18
Alignment explanation
Indices: 67034655--67034689 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
67034645 CAAGTCCGTC
67034655 TCATTAGGA-TCATCCTCT
1 TCATTA-GATTCATCCTCT
67034673 TCATTAGATTCATCCTC
1 TCATTAGATTCATCCTC
67034690 AGATTCATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.23, C:0.29, G:0.09, T:0.40
Consensus pattern (18 bp):
TCATTAGATTCATCCTCT
Found at i:67036505 original size:9 final size:9
Alignment explanation
Indices: 67036484--67036662 Score: 68
Period size: 9 Copynumber: 19.9 Consensus size: 9
67036474 TATGTATTAC
*
67036484 GTAAGTTAA
1 GTAAGTTAT
67036493 GTAAGCTT-T
1 GTAAG-TTAT
67036502 GTAAGTTAT
1 GTAAGTTAT
67036511 GTAAGTTAT
1 GTAAGTTAT
* * *
67036520 GTTA-TGAC
1 GTAAGTTAT
* *
67036528 ATACATTTAT
1 GTA-AGTTAT
*
67036538 GTAAGGTAT
1 GTAAGTTAT
67036547 GTAAGTTAT
1 GTAAGTTAT
* *
67036556 GATATGATAT
1 G-TAAGTTAT
* *
67036566 AT-ATTTAT
1 GTAAGTTAT
67036574 GT-A-TTAT
1 GTAAGTTAT
*
67036581 GTAAGTTGT
1 GTAAGTTAT
67036590 GTAAGTTAT
1 GTAAGTTAT
*
67036599 GATAAGATAT
1 G-TAAGTTAT
* *
67036609 AT-ATTTAT
1 GTAAGTTAT
*
67036617 GATATATATTTAT
1 G---TA-AGTTAT
67036630 GT-A-TTAT
1 GTAAGTTAT
*
67036637 GTAAGTTTT
1 GTAAGTTAT
67036646 GTAAGTTAT
1 GTAAGTTAT
*
67036655 GTTAGTTA
1 GTAAGTTA
67036663 CTATATGATA
Statistics
Matches: 126, Mismatches: 29, Indels: 30
0.68 0.16 0.16
Matches are distributed among these distances:
7 12 0.10
8 17 0.13
9 69 0.55
10 20 0.16
11 1 0.01
13 7 0.06
ACGTcount: A:0.34, C:0.02, G:0.18, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:67036548 original size:36 final size:36
Alignment explanation
Indices: 67036501--67036576 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
67036491 AAGTAAGCTT
* *
67036501 TGTAAGTTATGTAAGTTATGTTATGACATACATTTA
1 TGTAAGGTATGTAAGTTATGATATGACATACATTTA
* *
67036537 TGTAAGGTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGGTATGTAAGTTATGATATGACATACATTTA
67036573 TGTA
1 TGTA
67036577 TTATGTAAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.34, C:0.03, G:0.18, T:0.45
Consensus pattern (36 bp):
TGTAAGGTATGTAAGTTATGATATGACATACATTTA
Found at i:67036593 original size:43 final size:43
Alignment explanation
Indices: 67036534--67036617 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
67036524 TGACATACAT
*
67036534 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGGTATGTAAGTTATGATAAGATATATATTTATGTA
* *
67036577 TTATGTAAGTTGTGTAAGTTATGATAAGATATATATTTATG
1 TTATGTAAGGTATGTAAGTTATGATAAGATATATATTTATG
67036618 ATATATATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (43 bp):
TTATGTAAGGTATGTAAGTTATGATAAGATATATATTTATGTA
Found at i:67036622 original size:13 final size:13
Alignment explanation
Indices: 67036604--67036630 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67036594 GTTATGATAA
67036604 GATATATATTTAT
1 GATATATATTTAT
67036617 GATATATATTTAT
1 GATATATATTTAT
67036630 G
1 G
67036631 TATTATGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (13 bp):
GATATATATTTAT
Found at i:67037157 original size:10 final size:9
Alignment explanation
Indices: 67037111--67037157 Score: 51
Period size: 10 Copynumber: 5.0 Consensus size: 9
67037101 AATTATATTA
67037111 ATTGATAAAT
1 ATTGA-AAAT
67037121 ATTG-AAAT
1 ATTGAAAAT
67037129 ATTGAAATAT
1 ATTGAAA-AT
*
67037139 ATTTAAAAT
1 ATTGAAAAT
67037148 ATTGATAAAT
1 ATTGA-AAAT
67037158 GAAATATAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
8 8 0.25
9 8 0.25
10 16 0.50
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (9 bp):
ATTGAAAAT
Found at i:67037171 original size:26 final size:27
Alignment explanation
Indices: 67037117--67037171 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
67037107 ATTAATTGAT
**
67037117 AAATATTGAAATATTGAAATATATTTA
1 AAATATTGAAATATTGAAATATAAGTA
67037144 AAATATTGATAA-A-TGAAATATAAGTA
1 AAATATTGA-AATATTGAAATATAAGTA
67037170 AA
1 AA
67037172 TCATTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 13 0.52
27 10 0.40
28 2 0.08
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (27 bp):
AAATATTGAAATATTGAAATATAAGTA
Found at i:67040110 original size:55 final size:58
Alignment explanation
Indices: 67040043--67040161 Score: 163
Period size: 58 Copynumber: 2.1 Consensus size: 58
67040033 ATTGGGGAAA
* * * *
67040043 AAGGGGTAATTATTTT-GGGTTTTGAATTAGGG-AAA-AGGGGGAATAAACTAGGGAG
1 AAGGGGTAATTATTTTAGGGATTCGAAGTAGGGAAAATAGGGGAAATAAACTAGGGAG
* *
67040098 AAGGGGTGATTATTTTAGGGATTCGGAGTAGGGAAAATAGGGGAAATAAACTAGGGAG
1 AAGGGGTAATTATTTTAGGGATTCGAAGTAGGGAAAATAGGGGAAATAAACTAGGGAG
67040156 AAGGGG
1 AAGGGG
67040162 GAAATGAATA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
55 15 0.27
56 12 0.22
57 3 0.05
58 25 0.45
ACGTcount: A:0.35, C:0.03, G:0.39, T:0.24
Consensus pattern (58 bp):
AAGGGGTAATTATTTTAGGGATTCGAAGTAGGGAAAATAGGGGAAATAAACTAGGGAG
Found at i:67040648 original size:114 final size:114
Alignment explanation
Indices: 67040249--67040879 Score: 625
Period size: 114 Copynumber: 5.6 Consensus size: 114
67040239 ATCGTTTTCT
* * * * * * *
67040249 CCTAGCACCGCTAAAGGCAAACCAATTGAGGCATTTTAA-CATAAACGCCACTAAAAATCAAACA
1 CCTAGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATC-CATA
* * * * * * *
67040313 AAACGAC-GCAGTTTTGATATAAACAGAATAAACTTTAGTGGCGTTTTTCC
65 AAACTACACCA-TTTTGATATAAACAAAATAACCATTAGTGGCGTTTATAC
* * * *
67040363 CCTAGAGCCGCTAAAGGCAAATCTATTGCGGCG-TTTAACCCTAAAGCGCCACTAAAAATCCAAA
1 CCTAGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAA-CCAAAAACGCCACTAAAAATCC--A
* * ** * ** *
67040427 AAAAAATGACGGCGTTTCCATATAAACAGAATAA-CATTTAGTGGCGTTT-TATC
63 TAAAACT-ACACCATTTTGATATAAACAAAATAACCA-TTAGTGGCGTTTATA-C
* * * *
67040480 TCCAAGCGCCGCTAAAGGCGAAA-CTATTGCAGCGTTTTACCCTAAAACGCCACTAAAAATCCGA
1 -CCTAGCGCCGCTAAAGGC-AAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCC-A
67040544 TAAAACTACACCATTTTGATATAAACAAAATAACCATTAGTGGCGTTTATAC
63 TAAAACTACACCATTTTGATATAAACAAAATAACCATTAGTGGCGTTTATAC
*
67040596 CCTAGCGCCGCTAAA-TCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCCATAA
1 CCTAGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCCAT-A
* *
67040660 AAACTACACCATTTTGATATAAACAAAATAACCATTAGTGACGTTTATAA
65 AAACTACACCATTTTGATATAAACAAAATAACCATTAGTGGCGTTTATAC
* * * *
67040710 CCTAGTGTCGCTAAA-TCAAACCTATTACGGCGTTTTAACCAAAAACGCCACTAAAAATCCAT-A
1 CCTAGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCCATAA
* *
67040773 AA--A-A-C----T-ACTATAAACAAAATAACCATTAGTGGTGTTTATAA
66 AACTACACCATTTTGA-TATAAACAAAATAACCATTAGTGGCGTTTATAC
* * * *
67040814 CCTAGTGCCGCTAAA-TCAAACCTATTGCGGCGTTTTAACCTAAAACGCCACTAAAAATCCAAAA
1 CCTAGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCCATAA
67040878 AA
66 AA
67040880 AATGATGTCA
Statistics
Matches: 452, Mismatches: 48, Indels: 43
0.83 0.09 0.08
Matches are distributed among these distances:
103 1 0.00
104 90 0.20
105 3 0.01
108 1 0.00
109 1 0.00
110 1 0.00
112 3 0.01
113 10 0.02
114 172 0.38
115 31 0.07
116 40 0.09
117 43 0.10
118 49 0.11
119 7 0.02
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.24
Consensus pattern (114 bp):
CCTAGCGCCGCTAAAGGCAAACCTATTGCGGCGTTTTAACCAAAAACGCCACTAAAAATCCATAA
AACTACACCATTTTGATATAAACAAAATAACCATTAGTGGCGTTTATAC
Found at i:67040837 original size:104 final size:104
Alignment explanation
Indices: 67040677--67040880 Score: 354
Period size: 104 Copynumber: 2.0 Consensus size: 104
67040667 ACCATTTTGA
*
67040677 TATAAACAAAATAACCATTAGTGACGTTTATAACCTAGTGTCGCTAAATCAAACCTATTACGGCG
1 TATAAACAAAATAACCATTAGTGACGTTTATAACCTAGTGCCGCTAAATCAAACCTATTACGGCG
*
67040742 TTTTAACCAAAAACGCCACTAAAAATCCATAAAAACTAC
66 TTTTAACCAAAAACGCCACTAAAAATCCAAAAAAACTAC
** *
67040781 TATAAACAAAATAACCATTAGTGGTGTTTATAACCTAGTGCCGCTAAATCAAACCTATTGCGGCG
1 TATAAACAAAATAACCATTAGTGACGTTTATAACCTAGTGCCGCTAAATCAAACCTATTACGGCG
*
67040846 TTTTAACCTAAAACGCCACTAAAAATCCAAAAAAA
66 TTTTAACCAAAAACGCCACTAAAAATCCAAAAAAA
67040881 ATGATGTCAT
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
104 94 1.00
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.25
Consensus pattern (104 bp):
TATAAACAAAATAACCATTAGTGACGTTTATAACCTAGTGCCGCTAAATCAAACCTATTACGGCG
TTTTAACCAAAAACGCCACTAAAAATCCAAAAAAACTAC
Found at i:67041273 original size:109 final size:109
Alignment explanation
Indices: 67041087--67041311 Score: 441
Period size: 109 Copynumber: 2.1 Consensus size: 109
67041077 ACCATTTAAT
67041087 ATATATATATAATTTATCTATTATCTCTTACATAATTTAAACTATAATCATAATTTTAACATATT
1 ATATATATATAATTTATCTATTATCTCTTACATAATTTAAACTATAATCATAATTTTAACATATT
67041152 AAAATTAAAATTATCTCTTTTACAATTATATAAGAAATTATTTA
66 AAAATTAAAATTATCTCTTTTACAATTATATAAGAAATTATTTA
*
67041196 ATATATATATAATTTATCTATTATCTCTTACATAATTTAAACTATAATCATAATTTTAATATATT
1 ATATATATATAATTTATCTATTATCTCTTACATAATTTAAACTATAATCATAATTTTAACATATT
67041261 AAAATTAAAATTATCTCTTTTACAATTATATAAGAAATTATTTA
66 AAAATTAAAATTATCTCTTTTACAATTATATAAGAAATTATTTA
67041305 ATATATA
1 ATATATA
67041312 AATTACAAAA
Statistics
Matches: 115, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
109 115 1.00
ACGTcount: A:0.44, C:0.08, G:0.01, T:0.46
Consensus pattern (109 bp):
ATATATATATAATTTATCTATTATCTCTTACATAATTTAAACTATAATCATAATTTTAACATATT
AAAATTAAAATTATCTCTTTTACAATTATATAAGAAATTATTTA
Found at i:67041411 original size:8 final size:7
Alignment explanation
Indices: 67041393--67041497 Score: 54
Period size: 7 Copynumber: 14.7 Consensus size: 7
67041383 TAATCGATCT
67041393 CTAAACC
1 CTAAACC
67041400 CTAAACCC
1 CTAAA-CC
*
67041408 CT-AACA
1 CTAAACC
*
67041414 CTTAACC
1 CTAAACC
*
67041421 CTTAACC
1 CTAAACC
67041428 TCTAAACC
1 -CTAAACC
*
67041436 TTAAACTC
1 CTAAAC-C
67041444 C--AACC
1 CTAAACC
67041449 CTTAAACC
1 C-TAAACC
* *
67041457 ATACACC
1 CTAAACC
*
67041464 ATAAACC
1 CTAAACC
67041471 CTAAACC
1 CTAAACC
*
67041478 CATAATCC
1 C-TAAACC
*
67041486 ATAAACC
1 CTAAACC
*
67041493 TTAAA
1 CTAAA
67041498 ATAGTAACTC
Statistics
Matches: 77, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
5 2 0.03
6 6 0.08
7 49 0.64
8 20 0.26
ACGTcount: A:0.42, C:0.37, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:67041472 original size:22 final size:23
Alignment explanation
Indices: 67041445--67041497 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
67041435 CTTAAACTCC
67041445 AACCCTTAAA-CCATACA-CCATA
1 AACCCTTAAACCCATA-ATCCATA
67041467 AACCC-TAAACCCATAATCCATA
1 AACCCTTAAACCCATAATCCATA
67041489 AA-CCTTAAA
1 AACCCTTAAA
67041498 ATAGTAACTC
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 7 0.25
22 21 0.75
ACGTcount: A:0.47, C:0.34, G:0.00, T:0.19
Consensus pattern (23 bp):
AACCCTTAAACCCATAATCCATA
Found at i:67041538 original size:14 final size:14
Alignment explanation
Indices: 67041516--67041560 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
67041506 TCATACACTT
*
67041516 TAAACCCTAAATCA
1 TAAACCCTAAACCA
*
67041530 TATACCCTAAACCA
1 TAAACCCTAAACCA
*
67041544 TAAACCCTAAACTA
1 TAAACCCTAAACCA
67041558 TAA
1 TAA
67041561 TGATAATTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:67041867 original size:7 final size:7
Alignment explanation
Indices: 67041855--67041901 Score: 67
Period size: 7 Copynumber: 6.7 Consensus size: 7
67041845 ATTTACCCTT
67041855 AAACCCC
1 AAACCCC
*
67041862 AAACCCT
1 AAACCCC
*
67041869 AAACCAC
1 AAACCCC
67041876 AAACCCC
1 AAACCCC
67041883 AAACCCC
1 AAACCCC
*
67041890 AAATCCC
1 AAACCCC
67041897 AAACC
1 AAACC
67041902 ATAAATCTCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.47, C:0.49, G:0.00, T:0.04
Consensus pattern (7 bp):
AAACCCC
Found at i:67041873 original size:14 final size:14
Alignment explanation
Indices: 67041849--67041901 Score: 63
Period size: 14 Copynumber: 3.7 Consensus size: 14
67041839 CACTATATTT
67041849 ACCCTTAAACCCCAA
1 ACCC-TAAACCCCAA
*
67041864 ACCCTAAACCACAA
1 ACCCTAAACCCCAA
*
67041878 ACCCCAAACCCCAA
1 ACCCTAAACCCCAA
67041892 ATCCC-AAACC
1 A-CCCTAAACC
67041902 ATAAATCTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
14 27 0.79
15 7 0.21
ACGTcount: A:0.43, C:0.49, G:0.00, T:0.08
Consensus pattern (14 bp):
ACCCTAAACCCCAA
Found at i:67041907 original size:14 final size:14
Alignment explanation
Indices: 67041855--67041913 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
67041845 ATTTACCCTT
*
67041855 AAACCCCAAA-CCC
1 AAACCACAAATCCC
*
67041868 TAAACCACAAACCCC
1 -AAACCACAAATCCC
*
67041883 AAACCCCAAATCCC
1 AAACCACAAATCCC
* *
67041897 AAACCATAAATCTC
1 AAACCACAAATCCC
67041911 AAA
1 AAA
67041914 TTATAAACCA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 35 0.92
15 3 0.08
ACGTcount: A:0.49, C:0.42, G:0.00, T:0.08
Consensus pattern (14 bp):
AAACCACAAATCCC
Found at i:67041926 original size:7 final size:7
Alignment explanation
Indices: 67041916--67041984 Score: 50
Period size: 7 Copynumber: 9.9 Consensus size: 7
67041906 ATCTCAAATT
67041916 ATAAACC
1 ATAAACC
67041923 ATAAACC
1 ATAAACC
*
67041930 CTAAACTC
1 ATAAAC-C
*
67041938 -TAAGCC
1 ATAAACC
* *
67041944 CTAAACT
1 ATAAACC
* *
67041951 ATAAGCT
1 ATAAACC
67041958 ATAAACC
1 ATAAACC
*
67041965 CTAAACC
1 ATAAACC
*
67041972 ATAACCC
1 ATAAACC
67041979 ATAAAC
1 ATAAAC
67041985 TCTAATGACA
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
6 1 0.02
7 46 0.96
8 1 0.02
ACGTcount: A:0.48, C:0.30, G:0.03, T:0.19
Consensus pattern (7 bp):
ATAAACC
Found at i:67041966 original size:21 final size:21
Alignment explanation
Indices: 67041915--67041989 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 21
67041905 AATCTCAAAT
* *
67041915 TATAAACCATAAACCCTAAAC
1 TATAAACCCTAAACCATAAAC
* * * *
67041936 TCTAAGCCCTAAACTATAAGC
1 TATAAACCCTAAACCATAAAC
*
67041957 TATAAACCCTAAACCATAACC
1 TATAAACCCTAAACCATAAAC
* *
67041978 CATAAACTCTAA
1 TATAAACCCTAA
67041990 TGACAGTAAT
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.47, C:0.29, G:0.03, T:0.21
Consensus pattern (21 bp):
TATAAACCCTAAACCATAAAC
Found at i:67042083 original size:40 final size:38
Alignment explanation
Indices: 67042038--67042145 Score: 146
Period size: 38 Copynumber: 2.8 Consensus size: 38
67042028 GAAACTTTTT
*
67042038 ACGGCGTTTTTCAAAAAGCGTCGCTAATGCTTAATCTATA
1 ACGGCGTTTTTCAAAAAGCGCCGCTAATGC-T-ATCTATA
*
67042078 ACGGCGTTTTT-ATAAAAGTGCCGCTAATGCTATCTATA
1 ACGGCGTTTTTCA-AAAAGCGCCGCTAATGCTATCTATA
* *
67042116 GCGGCGTTTTTCCAAAAGCGCCGCTAATGC
1 ACGGCGTTTTTCAAAAAGCGCCGCTAATGC
67042146 CATTAAAGCT
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
38 33 0.54
39 2 0.03
40 26 0.43
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (38 bp):
ACGGCGTTTTTCAAAAAGCGCCGCTAATGCTATCTATA
Found at i:67042278 original size:40 final size:41
Alignment explanation
Indices: 67042234--67042364 Score: 128
Period size: 40 Copynumber: 3.2 Consensus size: 41
67042224 ACCTATAGCA
*
67042234 GCATTTTTTAAGAAGCGCCGCTAAT-GCTTGATCTTTTGCG
1 GCATTTTTTAACAAGCGCCGCTAATAGCTTGATCTTTTGCG
* *
67042274 GCATTTTTTACATAAGCGTCGCTAATAG--TGATCTTTTGCG
1 GCATTTTTTA-ACAAGCGCCGCTAATAGCTTGATCTTTTGCG
* * * * *
67042314 GCGTTTGTTTTACAAGCGCCACT-ATAGCTCTAATCTTTAGCG
1 GCATTT-TTTAACAAGCGCCGCTAATAGCT-TGATCTTTTGCG
67042356 GC-TTTTTTA
1 GCATTTTTTA
67042365 TTTAAGCACC
Statistics
Matches: 75, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
39 4 0.05
40 39 0.52
41 19 0.25
42 13 0.17
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.40
Consensus pattern (41 bp):
GCATTTTTTAACAAGCGCCGCTAATAGCTTGATCTTTTGCG
Found at i:67043997 original size:19 final size:19
Alignment explanation
Indices: 67043974--67044020 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
67043964 ATTTAATCCA
*
67043974 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
67043992 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
67044012 ATTTTTATT
1 ATTTTTATT
67044021 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:67049364 original size:40 final size:39
Alignment explanation
Indices: 67049267--67049657 Score: 419
Period size: 40 Copynumber: 9.8 Consensus size: 39
67049257 CTTAAGGTCA
* * * **
67049267 GCAGGCTTCGTGCTGGAATTATATTCGGACTT-AAGGTCC
1 GCAGGCTT-GTGCTGGAATTGTATCCGGGCTTAAAGACCC
*
67049306 GCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCC
1 GCAGGCTT-GTGCTGGAATTGTATCCGGGCTTAAAGACCC
* * * *
67049346 ACAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCT
1 GCAGGCT-TGTGCTGGAATTGTATCCGGGCTTAAAGACCC
* * **
67049386 GCAGGCTTTGTGCTGGAATTGTATCCTGACTT-AAGGTCC
1 GCAGGC-TTGTGCTGGAATTGTATCCGGGCTTAAAGACCC
* *
67049425 GCAAGCTTCGTGCTGGAATAGTATCCGGGCTTAAAGACCC
1 GCAGGCTT-GTGCTGGAATTGTATCCGGGCTTAAAGACCC
* *
67049465 GCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCC
1 GCAGGCT-TGTGCTGGAATTGTATCCGGGCTTAAAGACCC
* * **
67049505 GTAGGCTTTGTGCTGGAATTGTATCCGGACTT-AAGGTCC
1 GCAGGC-TTGTGCTGGAATTGTATCCGGGCTTAAAGACCC
*
67049544 GCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAAACCC
1 GCAGGCTT-GTGCTGGAATTGTATCCGGGCTTAAAGACCC
* * * *
67049584 ACAAGCTTTGTGCTGGAATTGTATCTGGGCTTAAAAACCC
1 GCAGGC-TTGTGCTGGAATTGTATCCGGGCTTAAAGACCC
*
67049624 GCAGGCTTCGTGCTGGAATTGTATCCGGACTTAA
1 GCAGGCTT-GTGCTGGAATTGTATCCGGGCTTAA
67049658 GATCAGTAGG
Statistics
Matches: 294, Mismatches: 47, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
38 4 0.01
39 91 0.31
40 193 0.66
41 6 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
GCAGGCTTGTGCTGGAATTGTATCCGGGCTTAAAGACCC
Found at i:67049478 original size:119 final size:119
Alignment explanation
Indices: 67049267--67049678 Score: 635
Period size: 119 Copynumber: 3.5 Consensus size: 119
67049257 CTTAAGGTCA
* *
67049267 GCAGGCTTCGTGCTGGAATTATATTCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCC
1 GCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCC
*
67049332 GGGCTTAAAGACCCACAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCT
66 GGGCTTAAAGACCCACAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCC
* * *
67049386 GCAGGCTTTGTGCTGGAATTGTATCCTGACTTAAGGTCCGCAAGCTTCGTGCTGGAATAGTATCC
1 GCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCC
*
67049451 GGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCC
66 GGGCTTAAAGACCCACAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCC
* * *
67049505 GTAGGCTTTGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCC
1 GCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCC
* * * * * * *
67049570 GGGCTTAAAAACCCACAAGCTTTGTGCTGGAATTGTATCTGGGCTTAAAAACCC
66 GGGCTTAAAGACCCACAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCC
* * * *
67049624 GCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCAGTAGGCTTCGTGCTGG
1 GCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGG
67049679 TACTATATTT
Statistics
Matches: 269, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
119 269 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (119 bp):
GCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCC
GGGCTTAAAGACCCACAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCC
Found at i:67049676 original size:79 final size:80
Alignment explanation
Indices: 67049265--67049678 Score: 439
Period size: 79 Copynumber: 5.2 Consensus size: 80
67049255 GACTTAAGGT
* * * ** *
67049265 CAGCAGGCTTCGTGCTGGAATTATATTCGGACTT-AAGGTCCGCAAGCTTCGTGCTGGAATTGTA
1 CAGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTA
*
67049329 TCCGGGCTTAAAGACC
66 TCCGGACTTAAAGA-C
* * * *
67049345 CA-CAGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGACCTGCAGGCTTTGTGCTGGAATTGT
1 CAGCAGGCT-TCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGT
* * *
67049408 ATCCTGACTTAAGGTC
65 ATCCGGACTTAAAGAC
* * * *
67049424 C-GCAAGCTTCGTGCTGGAATAGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTAT
1 CAGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCT-TCGTGCTGGAATTGT
*
67049487 ATCCGGGCTTAAAGAC
65 ATCCGGACTTAAAGAC
* * * * **
67049503 CCGTAGGCTTTGTGCTGGAATTGTATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTGTA
1 CAGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTA
* *
67049567 TCCGGGCTTAAAAACC
66 TCCGGACTTAAAGA-C
* * * *
67049583 CA-CAAGCTTTGTGCTGGAATTGTATCTGGGCTTAAAAACCCGCAGGCTTCGTGCTGGAATTGTA
1 CAGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTA
*
67049647 TCCGGACTT-AAGAT
66 TCCGGACTTAAAGAC
*
67049661 CAGTAGGCTTCGTGCTGG
1 CAGCAGGCTTCGTGCTGG
67049679 TACTATATTT
Statistics
Matches: 277, Mismatches: 47, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
78 4 0.01
79 170 0.61
80 103 0.37
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (80 bp):
CAGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTA
TCCGGACTTAAAGAC
Found at i:67049735 original size:39 final size:39
Alignment explanation
Indices: 67049645--67049758 Score: 122
Period size: 39 Copynumber: 2.9 Consensus size: 39
67049635 GCTGGAATTG
* * **
67049645 TATCCGGACTTAAGATCAGTAGGCTTCGTGCTGGTACTA
1 TATCCGGACTTAAGGTCCGTAGGCTTCGTATTGGTACTA
**
67049684 TATTTGGACTTAAGGTCCGTAGGCTTCGTATTGGTACTA
1 TATCCGGACTTAAGGTCCGTAGGCTTCGTATTGGTACTA
* * *
67049723 TATCC-GAGCTTAAAGTCTCGTAGGCTTTGTTTTGGT
1 TATCCGGA-CTTAAGGTC-CGTAGGCTTCGTATTGGT
67049759 GATTGAATTC
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
38 2 0.03
39 44 0.71
40 16 0.26
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.37
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGTAGGCTTCGTATTGGTACTA
Found at i:67052600 original size:2 final size:2
Alignment explanation
Indices: 67052587--67052638 Score: 68
Period size: 2 Copynumber: 26.0 Consensus size: 2
67052577 TGAAAATCAA
* * * *
67052587 AT AT AT AC AT AT AT AT AT AC AT AT AT AT AT AT AT AC AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67052629 AT AT AT AT AT
1 AT AT AT AT AT
67052639 GTGATGCTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:67052616 original size:16 final size:16
Alignment explanation
Indices: 67052595--67052637 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
67052585 AAATATATAC
*
67052595 ATATATATATACATAT
1 ATATATATATACACAT
67052611 ATATATATATACACAT
1 ATATATATATACACAT
67052627 ATATATATATA
1 ATATATATATA
67052638 TGTGATGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATATATATACACAT
Found at i:67052616 original size:18 final size:18
Alignment explanation
Indices: 67052589--67052638 Score: 82
Period size: 18 Copynumber: 2.8 Consensus size: 18
67052579 AAAATCAAAT
* *
67052589 ATATACATATATATATAC
1 ATATATATATATATACAC
67052607 ATATATATATATATACAC
1 ATATATATATATATACAC
67052625 ATATATATATATAT
1 ATATATATATATAT
67052639 GTGATGCTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (18 bp):
ATATATATATATATACAC
Found at i:67054215 original size:42 final size:42
Alignment explanation
Indices: 67054107--67054270 Score: 107
Period size: 43 Copynumber: 3.8 Consensus size: 42
67054097 AACATATACA
* * * * * *
67054107 ATGCCAACATCCCAGACGTGGTCTTACATGTAATAAAACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAA-AGCG
* * * * * *
67054150 ATGCC-TCTATCCTAGATAGGGTCTTACACGAAATCAGATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCA-AAAGCG
* * * *
67054192 ATGTCGATGTCCCAGACATGGTCTTACACGTAAAACAAAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCAAAAG-CG
* *
67054236 ATGCCAACGTCCCAGACGTGGTCTTACACAAAATC
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATC
67054271 CTATGTCATG
Statistics
Matches: 91, Mismatches: 24, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
42 27 0.30
43 36 0.40
44 28 0.31
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAAAGCG
Found at i:67059162 original size:22 final size:23
Alignment explanation
Indices: 67059124--67059199 Score: 102
Period size: 22 Copynumber: 3.3 Consensus size: 23
67059114 AAGTTGTATT
67059124 GAGCTGAAACAGTAAGCTCTAAC
1 GAGCTGAAACAGTAAGCTCTAAC
*
67059147 GAGCTG-AATAGTAAGCTC-ATAC
1 GAGCTGAAACAGTAAGCTCTA-AC
*
67059169 GAGCTGAAAACAGTAAGCTCTTAC
1 GAGCTG-AAACAGTAAGCTCTAAC
67059193 GAGCTGA
1 GAGCTGA
67059200 TATATCGATA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
21 1 0.02
22 19 0.41
23 7 0.15
24 19 0.41
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTAAC
Found at i:67059188 original size:24 final size:22
Alignment explanation
Indices: 67059124--67059199 Score: 100
Period size: 24 Copynumber: 3.3 Consensus size: 22
67059114 AAGTTGTATT
67059124 GAGCTGAAACAGTAAGCTCTAAC
1 GAGCTGAAACAGTAAGCTCT-AC
*
67059147 GAGCTG-AATAGTAAGCTCATAC
1 GAGCTGAAACAGTAAGCTC-TAC
67059169 GAGCTGAAAACAGTAAGCTCTTAC
1 GAGCTG-AAACAGTAAGCTC-TAC
67059193 GAGCTGA
1 GAGCTGA
67059200 TATATCGATA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
22 19 0.40
23 8 0.17
24 20 0.43
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (22 bp):
GAGCTGAAACAGTAAGCTCTAC
Found at i:67059195 original size:46 final size:48
Alignment explanation
Indices: 67059124--67059224 Score: 145
Period size: 46 Copynumber: 2.1 Consensus size: 48
67059114 AAGTTGTATT
*
67059124 GAGCTGAAACAGTAAGCTCTAACGAGCTGA-ATA-G-TAAGCTCATAC
1 GAGCTGAAACAGTAAGCTCTAACGAGCTGATATACGATAAACTCATAC
*
67059169 GAGCTGAAAACAGTAAGCTCTTACGAGCTGATATATCGATAAACTCATAC
1 GAGCTG-AAACAGTAAGCTCTAACGAGCTGATATA-CGATAAACTCATAC
67059219 GAGCTG
1 GAGCTG
67059225 TGGTGAGTCC
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
45 6 0.12
46 23 0.47
47 3 0.06
49 1 0.02
50 16 0.33
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (48 bp):
GAGCTGAAACAGTAAGCTCTAACGAGCTGATATACGATAAACTCATAC
Found at i:67059976 original size:17 final size:18
Alignment explanation
Indices: 67059951--67059985 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
67059941 AGACTACGAA
*
67059951 GCAACAATCA-TAAAAAT
1 GCAAAAATCATTAAAAAT
67059968 GCAAAAATCATTAAAAAT
1 GCAAAAATCATTAAAAAT
67059986 CGATCCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.60, C:0.14, G:0.06, T:0.20
Consensus pattern (18 bp):
GCAAAAATCATTAAAAAT
Found at i:67071248 original size:29 final size:29
Alignment explanation
Indices: 67071206--67071320 Score: 151
Period size: 29 Copynumber: 3.9 Consensus size: 29
67071196 ACGTGTGTAT
*
67071206 AATGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATACG
*
67071235 AATGTGATTTGGGCTTAATGGGCCATACG
1 AATGTGATTTGGGCCTAATGGGCCATACG
* *
67071264 AATATGATTTAGGCCTAATGGGCCATACG
1 AATGTGATTTGGGCCTAATGGGCCATACG
* *
67071293 AAAATGAGA-TTGGGCCTAGTGGGCCATA
1 --AATGTGATTTGGGCCTAATGGGCCATA
67071321 TGCATGTATG
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
29 53 0.71
30 17 0.23
31 5 0.07
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATACG
Found at i:67075953 original size:68 final size:70
Alignment explanation
Indices: 67075881--67076078 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
67075871 ACACCCTGTA
* * * *
67075881 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
67075943 ATAAAT
65 ATAAAT
*
67075949 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
67076014 ATAAAT
65 ATAAAT
*
67076020 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
67076079 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:67075992 original size:41 final size:41
Alignment explanation
Indices: 67075947--67076064 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67075937 TGAAAGATAA
67075947 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67075988 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67076018 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67076059 ATGTAG
1 ATGTAG
67076065 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67076004 original size:71 final size:71
Alignment explanation
Indices: 67075915--67076078 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67075905 GAGATGTATC
67075915 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67075980 AGGACA
66 AGGACA
67075986 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67076051 AGGACA
66 AGGACA
67076057 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67076079 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67083053 original size:68 final size:70
Alignment explanation
Indices: 67082981--67083178 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
67082971 ACACCCTGTA
* * * *
67082981 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
67083043 ATAAAT
65 ATAAAT
*
67083049 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
67083114 ATAAAT
65 ATAAAT
*
67083120 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
67083179 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:67083092 original size:41 final size:41
Alignment explanation
Indices: 67083047--67083164 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
67083037 TGAAAGATAA
67083047 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
67083088 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67083118 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
67083159 ATGTAG
1 ATGTAG
67083165 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:67083104 original size:71 final size:71
Alignment explanation
Indices: 67083015--67083178 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
67083005 GAGATGTATC
67083015 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67083080 AGGACA
66 AGGACA
67083086 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
67083151 AGGACA
66 AGGACA
67083157 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
67083179 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:67085641 original size:37 final size:37
Alignment explanation
Indices: 67085588--67085659 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
67085578 AGCTCAGACG
67085588 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
67085625 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
67085660 ATATATTTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:67085864 original size:50 final size:50
Alignment explanation
Indices: 67085810--67085906 Score: 142
Period size: 50 Copynumber: 1.9 Consensus size: 50
67085800 ATCGCCTACG
*
67085810 TATTTCACACTAG-CCATTCGGCTTTACCATATATACATATCTCATATATA
1 TATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATATA
* * *
67085860 TATTTCACATTGACCATTCGGCTTTACCACGTATGCATATCTCATAT
1 TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATAT
67085907 TCATCACATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 2 0.05
50 40 0.95
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.38
Consensus pattern (50 bp):
TATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATATA
Found at i:67085963 original size:47 final size:47
Alignment explanation
Indices: 67085864--67086150 Score: 407
Period size: 47 Copynumber: 6.1 Consensus size: 47
67085854 TATATATATT
* * * * *
67085864 TCACATTGACCATTCGGCTTTA-C-CACGTATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACATTCA
*
67085910 TCACATTGGCCATTTGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
67085957 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
67086004 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
67086051 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* * * ***
67086098 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
67086145 TCACAT
1 TCACAT
67086151 AAAATCCTAA
Statistics
Matches: 222, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
46 19 0.09
47 193 0.87
48 10 0.05
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:67089057 original size:42 final size:41
Alignment explanation
Indices: 67088935--67089213 Score: 242
Period size: 41 Copynumber: 7.0 Consensus size: 41
67088925 CGTTTACTTA
* * * * *
67088935 AAAACGCCGCAAAAAAATGAGAAATAGTGGCGTTTTTATCT
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTGTCT
*
67088976 AAAACGCCTCTAAAAA-T-AGATCAATAGCGGCGTTTTTGTCT
1 AAAACGCCACTAAAAACTGAGA--AATAGCGGCGTTTTTGTCT
* *
67089017 AAAACGCCACTAAAAACTGGGGAAATAGCGGCGTTTTTGTCC
1 AAAACGCCACTAAAAACT-GAGAAATAGCGGCGTTTTTGTCT
* * * *
67089059 CAAATGCCACT------T---CAATAGCGGCGTTTTTATCT
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTGTCT
* *
67089091 AAAACGCC-GTGAAAAACTGGAGAAATAGCAGCGTTTTTGTC-
1 AAAACGCCACT-AAAAACT-GAGAAATAGCGGCGTTTTTGTCT
* ** * *
67089132 CAAACGCCACTAAAAACTGATCAATAGCGGCGTTTTTATCC
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTGTCT
67089173 AAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTC
1 AAAACGCCACTAAAAACT-GAGAAATAGCGGCGTTTTTGTC
67089214 CAAGCACCAC
Statistics
Matches: 191, Mismatches: 28, Indels: 37
0.75 0.11 0.14
Matches are distributed among these distances:
31 1 0.01
32 23 0.12
36 1 0.01
38 1 0.01
39 3 0.02
40 19 0.10
41 77 0.40
42 64 0.34
44 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (41 bp):
AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTGTCT
Found at i:67089117 original size:74 final size:78
Alignment explanation
Indices: 67088995--67089214 Score: 281
Period size: 74 Copynumber: 2.8 Consensus size: 78
67088985 CTAAAAATAG
* *
67088995 ATCAATAGCGGCGTTTTTGTCTAAAACGCCACTAAAAACTGGGGAAATAGCGGCGTTTTTGTCCC
1 ATCAATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTCCC
*
67089060 AAATG-C-C-ACT
66 AAACGCCACAACT
* *
67089070 -TCAATAGCGGCGTTTTTATCTAAAACGCC-GTGAAAAACTGGAGAAATAGCAGCGTTTTTGT-C
1 ATCAATAGCGGCGTTTTTATCTAAAACGCCACT-AAAAACTGGAGAAATAGCGGCGTTTTTGTCC
67089132 CAAACGCCACTAAAAACT
65 CAAACGCCAC----AACT
* *
67089150 GATCAATAGCGGCGTTTTTATCCAAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTCC
1 -ATCAATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTCC
67089215 AAGCACCACT
Statistics
Matches: 124, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
73 7 0.06
74 56 0.45
75 1 0.01
80 3 0.02
82 55 0.44
83 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (78 bp):
ATCAATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTCCC
AAACGCCACAACT
Found at i:67089207 original size:82 final size:81
Alignment explanation
Indices: 67089070--67089250 Score: 265
Period size: 82 Copynumber: 2.2 Consensus size: 81
67089060 AAATGCCACT
* * *
67089070 TCAATAGCGGCGTTTTTATCTAAAACGCCGTGAAAAACTGGAGAAATAGCAGCGTTTTTGTCCAA
1 TCAATAGCGGCGTTTTTATCCAAAACGCCCTGAAAAACTAGAGAAATAGCAGCGTTTTTGTCCAA
*
67089135 ACGCCACTAAAAACTGA
66 ACACCACT-AAAACTGA
*
67089152 TCAATAGCGGCGTTTTTATCCAAAACGCCACT-AAAAACTAGAGAAATAGCGGCGTTTTTGTCCA
1 TCAATAGCGGCGTTTTTATCCAAAACGCC-CTGAAAAACTAGAGAAATAGCAGCGTTTTTGTCCA
*
67089216 AGCACCACTAAAACTGA
65 AACACCACTAAAACTGA
**
67089233 TCAATAGTAGCGTTTTTA
1 TCAATAGCGGCGTTTTTA
67089251 GGCCCAAACG
Statistics
Matches: 90, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
81 24 0.27
82 65 0.72
83 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (81 bp):
TCAATAGCGGCGTTTTTATCCAAAACGCCCTGAAAAACTAGAGAAATAGCAGCGTTTTTGTCCAA
ACACCACTAAAACTGA
Found at i:67089216 original size:42 final size:41
Alignment explanation
Indices: 67089072--67089250 Score: 186
Period size: 41 Copynumber: 4.4 Consensus size: 41
67089062 ATGCCACTTC
* *
67089072 AATAGCGGCGTTTTTATCTAAAACGCC-GTGAAAAACTGGAGA
1 AATAGCGGCGTTTTTATCCAAAACGCCACT-AAAAACT-GAGA
* * **
67089114 AATAGCAGCGTTTTTGTCC-AAACGCCACTAAAAACTGATC
1 AATAGCGGCGTTTTTATCCAAAACGCCACTAAAAACTGAGA
67089154 AATAGCGGCGTTTTTATCCAAAACGCCACTAAAAACTAGAGA
1 AATAGCGGCGTTTTTATCCAAAACGCCACTAAAAACT-GAGA
* * * **
67089196 AATAGCGGCGTTTTTGTCC-AAGCACCACT-AAAACTGATC
1 AATAGCGGCGTTTTTATCCAAAACGCCACTAAAAACTGAGA
**
67089235 AATAGTAGCGTTTTTA
1 AATAGCGGCGTTTTTA
67089251 GGCCCAAACG
Statistics
Matches: 116, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 15 0.13
40 25 0.22
41 39 0.34
42 37 0.32
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (41 bp):
AATAGCGGCGTTTTTATCCAAAACGCCACTAAAAACTGAGA
Found at i:67089398 original size:11 final size:11
Alignment explanation
Indices: 67089370--67089399 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
67089360 ATCTGATTTA
*
67089370 ATTTTCATATT
1 ATTTTCTTATT
67089381 ATTTTCTTATT
1 ATTTTCTTATT
67089392 ATTTTCTT
1 ATTTTCTT
67089400 TTAATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (11 bp):
ATTTTCTTATT
Found at i:67092392 original size:27 final size:27
Alignment explanation
Indices: 67092314--67092425 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
67092304 AGCATGGCTG
* * *
67092314 CCAGAACAGATAA-TATGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
67092340 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
67092368 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
67092395 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
67092422 CCAG
1 CCAG
67092426 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 48 0.66
28 17 0.23
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:67092406 original size:54 final size:54
Alignment explanation
Indices: 67092314--67092425 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
67092304 AGCATGGCTG
* *
67092314 CCAGAACAGATAATATGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATATGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
67092368 CCAGAACAGA-AATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATA--TGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
67092422 CCAG
1 CCAG
67092426 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 4 0.08
54 32 0.63
55 15 0.29
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATATGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:67092594 original size:32 final size:32
Alignment explanation
Indices: 67092553--67092615 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
67092543 AGTCATTTAC
67092553 ACCTAGGGGTATCATGGTAATTTTCCATACAA
1 ACCTAGGGGTATCATGGTAATTTTCCATACAA
67092585 ACCTAGGGGTATCATGGTAATTTTCCATACA
1 ACCTAGGGGTATCATGGTAATTTTCCATACA
67092616 TAAGGGTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (32 bp):
ACCTAGGGGTATCATGGTAATTTTCCATACAA
Found at i:67093901 original size:24 final size:24
Alignment explanation
Indices: 67093874--67093944 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
67093864 CTAGATTTCC
*
67093874 TCCCTTATCTACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
* *
67093898 TCCCTCATCAACTCTTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
67093922 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
67093945 CTCTTGACAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.27, C:0.38, G:0.00, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:67095289 original size:356 final size:357
Alignment explanation
Indices: 67094631--67095343 Score: 1286
Period size: 356 Copynumber: 2.0 Consensus size: 357
67094621 TTTTCAATCT
*
67094631 TTGTACTTCCTTTAGACTCTTAGTAGTAGTAGAAAAGTATTAGCAATTGATTACATTGAAGTATT
1 TTGTACTTCCTTTAGACTCTTAGTAGCAGTAGAAAAGTATTAGCAATTGATTACATTGAAGTATT
*
67094696 AGCAATTGATGTTGTGTCATTCAGATGCTATGTCATGTTTGAGTTTAAATGAATGTGCTGTTACA
66 AGCAATTGATGCTGTGTCATTCAGATGCTATGTCATGTTTGAGTTTAAATGAATGTGCTGTTACA
* *
67094761 GCATTAGCAATTGATGCAGCTGGTTCAGTTTTATATTCTGTTACAGAATTCTAGGTAAAGCCATA
131 GCATTAGCAAGTGATGCAGCTGGTTCAGTTTTATATTCTGTTACAGAATTCTAGGTAAAGCCACA
* *
67094826 CAGATGTAGGAAGTTTCTGAACTATGTAACTAAAATTTTAGTGTTCATCTTAGTTTTATAACTAG
196 CAGATGTAGGAAGTTTCTAAACTATGTAACTAAAATTTTAGTGTTCATCTCAGTTTTATAACTAG
67094891 TAGTAAGTTTATCTAGTTGCATCTGAACGAAAATTTGGAAGGCAAATTCAATGAATCTATAAATT
261 TAGTAAGTTTATCTAGTTGCATCTGAACGAAAATTTGGAAGGCAAATTCAATGAATCTATAAATT
67094956 GTCAAAGAATCAGATAATAACACATCTTTTAA
326 GTCAAAGAATCAGATAATAACACATCTTTTAA
67094988 TTGTACTTCCTTTAGACTCTTAGTAGCAGTAGAAAAGTATTAGCAATTGATTACATTGAAGTATT
1 TTGTACTTCCTTTAGACTCTTAGTAGCAGTAGAAAAGTATTAGCAATTGATTACATTGAAGTATT
*
67095053 AGCAATTGATGCTGTGTCATTCAGATGCTGTGTCATGTTTGAGTTTAAATGAATGTGCTGTTACA
66 AGCAATTGATGCTGTGTCATTCAGATGCTATGTCATGTTTGAGTTTAAATGAATGTGCTGTTACA
*
67095118 GCATTAGCAAGTGATG-AGTTGGTTC-GATTTTATATTCTGTTACAGAATTCTAGGTAAAGCCAC
131 GCATTAGCAAGTGATGCAGCTGGTTCAG-TTTTATATTCTGTTACAGAATTCTAGGTAAAGCCAC
* *
67095181 ATAGATGTAGGAAGTTTTTAAACTATGTAACTAAAATTTTAGTGTTCATCTCAGTTTTATAACTA
195 ACAGATGTAGGAAGTTTCTAAACTATGTAACTAAAATTTTAGTGTTCATCTCAGTTTTATAACTA
*
67095246 GTAGTAAGTTTATCTAGTTGCATCTGAATGAAAATTTGGAAGGCAAATTCAATGAATCTATAAAT
260 GTAGTAAGTTTATCTAGTTGCATCTGAACGAAAATTTGGAAGGCAAATTCAATGAATCTATAAAT
* *
67095311 TGTCAATGAATTAGATAATAACACATCTTTTAA
325 TGTCAAAGAATCAGATAATAACACATCTTTTAA
67095344 AATAAAATAA
Statistics
Matches: 342, Mismatches: 13, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
355 1 0.00
356 199 0.58
357 142 0.42
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (357 bp):
TTGTACTTCCTTTAGACTCTTAGTAGCAGTAGAAAAGTATTAGCAATTGATTACATTGAAGTATT
AGCAATTGATGCTGTGTCATTCAGATGCTATGTCATGTTTGAGTTTAAATGAATGTGCTGTTACA
GCATTAGCAAGTGATGCAGCTGGTTCAGTTTTATATTCTGTTACAGAATTCTAGGTAAAGCCACA
CAGATGTAGGAAGTTTCTAAACTATGTAACTAAAATTTTAGTGTTCATCTCAGTTTTATAACTAG
TAGTAAGTTTATCTAGTTGCATCTGAACGAAAATTTGGAAGGCAAATTCAATGAATCTATAAATT
GTCAAAGAATCAGATAATAACACATCTTTTAA
Found at i:67095976 original size:16 final size:16
Alignment explanation
Indices: 67095955--67095986 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
67095945 TCTGCAAGAA
67095955 AAAATATTACCAATTG
1 AAAATATTACCAATTG
67095971 AAAATATTACCAATTG
1 AAAATATTACCAATTG
67095987 TTCTTCCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.31
Consensus pattern (16 bp):
AAAATATTACCAATTG
Found at i:67096475 original size:25 final size:25
Alignment explanation
Indices: 67096447--67096496 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
67096437 TCCGCATCGT
67096447 CATCAGCAGT-CCTC-TGCTACATCTC
1 CATCAGCA-TCCCTCAT-CTACATCTC
*
67096472 CATCGGCATCCCTCATCTACATCTC
1 CATCAGCATCCCTCATCTACATCTC
67096497 TGTTGGCATC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 1 0.05
25 20 0.91
26 1 0.05
ACGTcount: A:0.20, C:0.42, G:0.10, T:0.28
Consensus pattern (25 bp):
CATCAGCATCCCTCATCTACATCTC
Found at i:67097791 original size:9 final size:9
Alignment explanation
Indices: 67097777--67097991 Score: 176
Period size: 9 Copynumber: 24.1 Consensus size: 9
67097767 TATTATTTAA
67097777 TACATAACT
1 TACATAACT
67097786 TACATAACT
1 TACATAACT
*
67097795 TATATAA--
1 TACATAACT
67097802 TACATAACT
1 TACATAACT
*
67097811 TACATAATT
1 TACATAACT
67097820 TACATAACT
1 TACATAACT
67097829 TACATAACT
1 TACATAACT
67097838 TACATAA--
1 TACATAACT
* *
67097845 TACATGAGT
1 TACATAACT
*
67097854 TACATAATT
1 TACATAACT
* *
67097863 TAAAGATCAAAT
1 T--ACAT-AACT
* *
67097875 TTCAAAACT
1 TACATAACT
67097884 TACATAA--
1 TACATAACT
67097891 TACATAACT
1 TACATAACT
*
67097900 TACATAATT
1 TACATAACT
* *
67097909 TAAAAATCAAAT
1 T--ACAT-AACT
*
67097921 TTCATAACT
1 TACATAACT
*
67097930 TACATAATT
1 TACATAACT
67097939 TACATAACT
1 TACATAACT
*
67097948 TACATAATT
1 TACATAACT
67097957 TACATAACT
1 TACATAACT
67097966 TACATAA--
1 TACATAACT
*
67097973 TACATGACT
1 TACATAACT
67097982 TACATAACT
1 TACATAACT
67097991 T
1 T
67097992 TATTATACTT
Statistics
Matches: 164, Mismatches: 28, Indels: 28
0.75 0.13 0.13
Matches are distributed among these distances:
7 25 0.15
9 122 0.74
10 3 0.02
11 6 0.04
12 8 0.05
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (9 bp):
TACATAACT
Found at i:67097797 original size:25 final size:25
Alignment explanation
Indices: 67097769--67097844 Score: 107
Period size: 25 Copynumber: 3.0 Consensus size: 25
67097759 TTTTTAAATA
*
67097769 TTATTTAATACATAACTTACATAAC
1 TTATATAATACATAACTTACATAAC
*
67097794 TTATATAATACATAACTTACATAAT
1 TTATATAATACATAACTTACATAAC
*
67097819 TTACATAACTTACATAACTTACATAA
1 TTATATAA--TACATAACTTACATAA
67097845 TACATGAGTT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 30 0.65
27 16 0.35
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (25 bp):
TTATATAATACATAACTTACATAAC
Found at i:67097825 original size:18 final size:18
Alignment explanation
Indices: 67097777--67097993 Score: 194
Period size: 18 Copynumber: 12.6 Consensus size: 18
67097767 TATTATTTAA
*
67097777 TACATAACTTACATAACT
1 TACATAATTTACATAACT
*
67097795 TATATAA--TACATAACT
1 TACATAATTTACATAACT
67097811 TACATAATTTACATAACT
1 TACATAATTTACATAACT
*
67097829 TACATAACTTACATAA--
1 TACATAATTTACATAACT
* * *
67097845 TACATGAGTTACATAATT
1 TACATAATTTACATAACT
* *
67097863 TAAAGATCAAATTT-CAAAACT
1 T--ACAT--AATTTACATAACT
67097884 TACATAA--TACATAACT
1 TACATAATTTACATAACT
*
67097900 TACATAATTTA-A-AA-A
1 TACATAATTTACATAACT
67097915 T-CA-AATTT-CATAACT
1 TACATAATTTACATAACT
67097930 TACATAATTTACATAACT
1 TACATAATTTACATAACT
67097948 TACATAATTTACATAACT
1 TACATAATTTACATAACT
*
67097966 TACATAA--TACATGACT
1 TACATAATTTACATAACT
67097982 TACATAACTTTA
1 TACATAA-TTTA
67097994 TTATACTTAT
Statistics
Matches: 164, Mismatches: 15, Indels: 39
0.75 0.07 0.18
Matches are distributed among these distances:
13 6 0.04
14 4 0.02
15 3 0.02
16 61 0.37
17 8 0.05
18 65 0.40
19 5 0.03
20 3 0.02
21 6 0.04
22 3 0.02
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (18 bp):
TACATAATTTACATAACT
Found at i:67097892 original size:46 final size:46
Alignment explanation
Indices: 67097788--67097958 Score: 231
Period size: 46 Copynumber: 3.7 Consensus size: 46
67097778 ACATAACTTA
* * * *
67097788 CATAACTTATATAATACATAACTTACATAATTT--ACAT-AACTTA
1 CATAACTTACATAATACATAACTTACATAATTTAAAAATCAAATTT
* * *
67097831 CATAACTTACATAATACATGAGTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATACATAACTTACATAATTTAAAAATCAAATTT
*
67097877 CAAAACTTACATAATACATAACTTACATAATTTAAAAATCAAATTT
1 CATAACTTACATAATACATAACTTACATAATTTAAAAATCAAATTT
67097923 CATAACTTACATAATTTACATAACTTACATAATTTA
1 CATAACTTACATAA--TACATAACTTACATAATTTA
67097959 CATAACTTAC
Statistics
Matches: 112, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
43 30 0.27
45 3 0.03
46 59 0.53
48 20 0.18
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.36
Consensus pattern (46 bp):
CATAACTTACATAATACATAACTTACATAATTTAAAAATCAAATTT
Found at i:67103039 original size:13 final size:14
Alignment explanation
Indices: 67103023--67103051 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67103013 TTATAAATAT
67103023 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
67103036 TTATAATGGTTTAA
1 TTATAATGGTTTAA
67103050 TT
1 TT
67103052 TGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:67103521 original size:21 final size:21
Alignment explanation
Indices: 67103473--67103524 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
67103463 GGCAGCAGAT
* **
67103473 AGGGAGGCAACAGCAGCAGTG
1 AGGGAGGCAGCAGCAGCAACG
* *
67103494 AGAGAGGCAGCAGCGGCAACG
1 AGGGAGGCAGCAGCAGCAACG
67103515 AGGGAGGCAG
1 AGGGAGGCAG
67103525 AGGCGAGCAG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.33, C:0.19, G:0.46, T:0.02
Consensus pattern (21 bp):
AGGGAGGCAGCAGCAGCAACG
Found at i:67103802 original size:22 final size:20
Alignment explanation
Indices: 67103777--67103816 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
67103767 ATGCTAAATT
*
67103777 TGCTATTTTTGGTTGCATTTCA
1 TGCTATATTT-GTTG-ATTTCA
67103799 TGCTATATTTGTTGATTT
1 TGCTATATTTGTTGATTT
67103817 TGGTTGGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 4 0.24
22 9 0.53
ACGTcount: A:0.15, C:0.10, G:0.17, T:0.57
Consensus pattern (20 bp):
TGCTATATTTGTTGATTTCA
Found at i:67103809 original size:31 final size:33
Alignment explanation
Indices: 67103749--67103822 Score: 82
Period size: 31 Copynumber: 2.3 Consensus size: 33
67103739 AGAATTAATG
* *
67103749 TTTTTGGTTGTATTTTTTATGCTAAATTTGCT-A
1 TTTTTGGTTGCA-TTTTCATGCTAAATTTGCTGA
* *
67103782 TTTTTGGTTGCA-TTTCATGCTATATTTGTTGA
1 TTTTTGGTTGCATTTTCATGCTAAATTTGCTGA
67103814 -TTTTGGTTG
1 TTTTTGGTTG
67103823 GATTCAATGC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
31 24 0.67
32 1 0.03
33 11 0.31
ACGTcount: A:0.15, C:0.07, G:0.19, T:0.59
Consensus pattern (33 bp):
TTTTTGGTTGCATTTTCATGCTAAATTTGCTGA
Found at i:67105289 original size:38 final size:35
Alignment explanation
Indices: 67105230--67105330 Score: 129
Period size: 31 Copynumber: 2.9 Consensus size: 35
67105220 TCAATCATGC
*
67105230 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
67105269 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
67105300 ACTGGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
67105331 ACTGGGCTGA
Statistics
Matches: 57, Mismatches: 1, Indels: 12
0.81 0.01 0.17
Matches are distributed among these distances:
31 27 0.47
33 3 0.05
34 1 0.02
36 1 0.02
38 14 0.25
39 11 0.19
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.40
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:67105291 original size:31 final size:31
Alignment explanation
Indices: 67105253--67105347 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
67105243 CCTTTTCATA
*
67105253 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67105284 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
*
67105315 TTTCATATTTCATATTACTGGGCTGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67105346 TT
1 TT
67105348 ACTGTAAACG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:67105590 original size:24 final size:24
Alignment explanation
Indices: 67105539--67105681 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
67105529 GCTTTATCAT
*
67105539 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
67105564 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
67105588 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
67105611 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
67105635 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
67105659 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67105682 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67105618 original size:47 final size:48
Alignment explanation
Indices: 67105539--67105680 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
67105529 GCTTTATCAT
* *
67105539 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
67105588 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
67105635 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
67105681 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:67105639 original size:71 final size:72
Alignment explanation
Indices: 67105538--67105681 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
67105528 TGCTTTATCA
*
67105538 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
67105603 GCCCTTT
66 GCCCTTT
* * **
67105610 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
67105673 AGCCCTTT
65 AGCCCTTT
67105681 T
1 T
67105682 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:67105757 original size:20 final size:20
Alignment explanation
Indices: 67105732--67105791 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
67105722 TATGATTACC
67105732 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
67105752 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
67105772 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
67105792 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:67105866 original size:25 final size:25
Alignment explanation
Indices: 67105834--67105881 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67105824 ATACATAAAC
* * *
67105834 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
67105859 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
67105882 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:67107477 original size:27 final size:27
Alignment explanation
Indices: 67107121--67107466 Score: 401
Period size: 27 Copynumber: 12.8 Consensus size: 27
67107111 GGGTATTTTA
* * *
67107121 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
67107148 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * **
67107175 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
67107202 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
67107229 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
67107256 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
67107283 ATAATTATGTAAATCTG-GGGTAAAATG
1 GTAATTCTATAAATC-GAGGGTAAAACG
* * *
67107310 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
**
67107337 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
67107364 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
67107391 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
67107418 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
67107445 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
67107467 CTTTGGTAAT
Statistics
Matches: 286, Mismatches: 27, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.00
27 282 0.99
28 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:67107488 original size:27 final size:27
Alignment explanation
Indices: 67107390--67107694 Score: 242
Period size: 27 Copynumber: 11.3 Consensus size: 27
67107380 AGGGTAAAAC
* * ****
67107390 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
****
67107417 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
67107444 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
67107471 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
67107498 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
67107525 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
67107552 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
67107579 GATAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
67107606 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * * *
67107633 GGTAATTTTATAAACCAATGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
67107660 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
67107686 GGTAATTTT
1 GGTAATTTT
67107695 GTAAACCAAA
Statistics
Matches: 241, Mismatches: 34, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
26 18 0.07
27 221 0.92
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:67107708 original size:26 final size:26
Alignment explanation
Indices: 67107544--67107711 Score: 174
Period size: 27 Copynumber: 6.3 Consensus size: 26
67107534 ACAAATTAGG
* *
67107544 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
67107571 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
67107598 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
67107625 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* * *
67107651 TGGTATTTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTTACAAACCAA
**
67107678 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
67107704 AGTATTTT
1 GGTATTTT
67107712 AAACATGGAT
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
26 28 0.22
27 97 0.78
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:67110526 original size:38 final size:35
Alignment explanation
Indices: 67110467--67110584 Score: 135
Period size: 31 Copynumber: 3.5 Consensus size: 35
67110457 TCAATCATGC
*
67110467 ACTGGGCCGTAGCCCTTTTCATATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATATTTCATATTT-AT--T
67110506 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
67110537 ACTGGGCCGAAGCCTTTTCATATTTC--A--TATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
67110568 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
67110585 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
31 49 0.63
33 2 0.03
34 1 0.01
36 1 0.01
38 14 0.18
39 11 0.14
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (35 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTATT
Found at i:67110528 original size:31 final size:31
Alignment explanation
Indices: 67110490--67110584 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
67110480 CCTTTTCATA
*
67110490 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67110521 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67110552 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATTACTGGGCCGAAGCCT
67110583 TT
1 TT
67110585 ACTGTAAACG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATATTACTGGGCCGAAGCCT
Found at i:67110827 original size:24 final size:24
Alignment explanation
Indices: 67110776--67110918 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
67110766 GCTTTATCAT
*
67110776 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
67110801 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
67110825 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
67110848 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
67110872 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
67110896 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
67110919 TCACTTCCTC
Statistics
Matches: 111, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.68
25 12 0.11
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67110855 original size:47 final size:48
Alignment explanation
Indices: 67110776--67110917 Score: 207
Period size: 47 Copynumber: 3.0 Consensus size: 48
67110766 GCTTTATCAT
* *
67110776 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTCA
**
67110825 ATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
*
67110872 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
67110918 TTCACTTCCT
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
47 44 0.51
48 31 0.36
49 12 0.14
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:67110876 original size:71 final size:72
Alignment explanation
Indices: 67110775--67110918 Score: 220
Period size: 71 Copynumber: 2.0 Consensus size: 72
67110765 TGCTTTATCA
*
67110775 TATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
1 TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
67110840 GCCCTTT
66 GCCCTTT
* * **
67110847 TATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
67110910 AGCCCTTT
65 AGCCCTTT
67110918 T
1 T
67110919 TCACTTCCTC
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
71 53 0.80
72 13 0.20
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (72 bp):
TATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAA
GCCCTTT
Found at i:67110994 original size:20 final size:20
Alignment explanation
Indices: 67110969--67111028 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
67110959 TATGATTACC
67110969 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
67110989 TCATGTGCATAGCATACATT
1 TCATGTGCATATCATACATA
67111009 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
67111029 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:67111103 original size:25 final size:25
Alignment explanation
Indices: 67111071--67111118 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
67111061 ATACATAAAC
* * *
67111071 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
67111096 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
67111119 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:67112713 original size:27 final size:27
Alignment explanation
Indices: 67112357--67112702 Score: 401
Period size: 27 Copynumber: 12.8 Consensus size: 27
67112347 GGGTATTTTA
* * *
67112357 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
67112384 GTAATTTTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * **
67112411 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
67112438 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
67112465 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
67112492 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
67112519 ATAATTATGTAAATCTG-GGGTAAAATG
1 GTAATTCTATAAATC-GAGGGTAAAACG
* * *
67112546 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAACG
**
67112573 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAACG
*
67112600 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAACG
67112627 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
67112654 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
67112681 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
67112703 CTTTGGTAAT
Statistics
Matches: 286, Mismatches: 27, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.00
27 282 0.99
28 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:67112724 original size:27 final size:27
Alignment explanation
Indices: 67112626--67112930 Score: 233
Period size: 27 Copynumber: 11.3 Consensus size: 27
67112616 AGGGTAAAAC
* * ****
67112626 GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
****
67112653 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
67112680 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
67112707 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
67112734 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
67112761 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
67112788 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* *
67112815 GATAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
67112842 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
* * * *
67112869 GGTAATTTTATAAACCAATGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
67112896 AGTAATTTTACAAAGC-AAGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
67112922 GGTAATTTT
1 GGTAATTTT
67112931 GTAAACCAAA
Statistics
Matches: 241, Mismatches: 34, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
26 18 0.07
27 221 0.92
28 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:67112944 original size:26 final size:26
Alignment explanation
Indices: 67112780--67112947 Score: 183
Period size: 27 Copynumber: 6.3 Consensus size: 26
67112770 ACAAATTAGG
* *
67112780 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* * *
67112807 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
* *
67112834 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCA-A
*
67112861 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
* *
67112887 TGGTATTTTAGTAATTTTACAAAGCAA
1 -GGTATTTTGGTAATTTTACAAACCAA
**
67112914 GGTATTTTGGTAATTTTGTAAACCAA
1 GGTATTTTGGTAATTTTACAAACCAA
*
67112940 AGTATTTT
1 GGTATTTT
67112948 AAACATGGAT
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 29 0.23
27 98 0.77
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.42
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACCAA
Found at i:67118726 original size:24 final size:23
Alignment explanation
Indices: 67118694--67118802 Score: 137
Period size: 24 Copynumber: 4.6 Consensus size: 23
67118684 ACCAAACGTT
* **
67118694 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
67118718 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
67118742 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
67118766 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
67118790 GCACACATAGTGC
1 GCACACATAGTGC
67118803 ATTTGAGATT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
23 2 0.03
24 68 0.89
25 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:67118768 original size:48 final size:48
Alignment explanation
Indices: 67118694--67118802 Score: 175
Period size: 48 Copynumber: 2.3 Consensus size: 48
67118684 ACCAAACGTT
* **
67118694 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
67118742 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
67118790 GCACACATAGTGC
1 GCACACATAGTGC
67118803 ATTTGAGATT
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 53 0.93
49 4 0.07
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:67131873 original size:18 final size:17
Alignment explanation
Indices: 67131826--67131875 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 17
67131816 AAAGACTAAG
*
67131826 AAAATTTTG-GGGTTTT
1 AAAAGTTTGAGGGTTTT
* *
67131842 AAGAGTTTTA-GGTTTT
1 AAAAGTTTGAGGGTTTT
67131858 AAAAGATTTGAGGGTTTT
1 AAAAG-TTTGAGGGTTTT
67131876 GGAGAATATT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
16 16 0.62
17 4 0.15
18 6 0.23
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (17 bp):
AAAAGTTTGAGGGTTTT
Found at i:67135120 original size:22 final size:21
Alignment explanation
Indices: 67135090--67135134 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
67135080 ATCTTCAGGG
*
67135090 TATCTTCAAGGATGTGTCGCGA
1 TATCATCAA-GATGTGTCGCGA
* *
67135112 TATCATCAAGCTGTGTCGTGA
1 TATCATCAAGATGTGTCGCGA
67135133 TA
1 TA
67135135 CTGCAGGCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.33
Consensus pattern (21 bp):
TATCATCAAGATGTGTCGCGA
Found at i:67141471 original size:37 final size:37
Alignment explanation
Indices: 67141412--67141520 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
67141402 AGCTCAGATG
* * *
67141412 AAATCTCCACACGAAGTTATCGGGTCTTACCGGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
67141449 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
67141486 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
67141521 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:67141938 original size:50 final size:49
Alignment explanation
Indices: 67141670--67142247 Score: 927
Period size: 48 Copynumber: 11.8 Consensus size: 49
67141660 CATCTCCTAC
* *
67141670 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC-ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTATAT
* *
67141718 ATATTTCACACTAGCCATTCGACTTTACCACATATACATATC-CATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TATAT
*
67141767 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTATAT
*
67141815 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTATAT
*
67141863 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TATAT
67141913 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TATAT
* * * *
67141963 ATATTTCACATTAGCCATTCGCCTTTACCATATATAAATATCTC-ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTATAT
*
67142011 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TATAT
*
67142061 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-TATAT
*
67142111 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTATAT
67142159 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT-TATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTATAT
*
67142207 ATATTTCACATTAGCCATTCGGATTTACCACATATACATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
67142248 ATTTATCTTG
Statistics
Matches: 501, Mismatches: 21, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
47 1 0.00
48 267 0.53
49 43 0.09
50 190 0.38
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (49 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCTATAT
Found at i:67142028 original size:148 final size:148
Alignment explanation
Indices: 67141670--67142247 Score: 1040
Period size: 148 Copynumber: 3.9 Consensus size: 148
67141660 CATCTCCTAC
*
67141670 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
*
67141735 TTCGACTTTACCACATATACATATC-CATATATATATTTCACATTAGCCATTCGGCTTTACCACA
66 TTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACA
*
67141799 TATACATATCTC--ATAC
131 TATACATATCTCATATAT
67141815 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
67141880 TTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACA
66 TTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACA
67141945 TATACATATCTCATATAT
131 TATACATATCTCATATAT
* * *
67141963 ATATTTCACATTAGCCATTCGCCTTTACCATATATAAATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
*
67142028 TTCGGCTTTACCACATATACATATCTCATATATATATTTCACACTAGCCATTCGGCTTTACCACA
66 TTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACA
67142093 TATACATATCTCATATAT
131 TATACATATCTCATATAT
*
67142111 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
*
67142176 TTCGGCTTTACCACATATACATATCT--TATATATATTTCACATTAGCCATTCGGATTTACCACA
66 TTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACA
67142239 TATACATAT
131 TATACATAT
67142248 ATTTATCTTG
Statistics
Matches: 417, Mismatches: 13, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
145 88 0.21
146 95 0.23
148 234 0.56
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (148 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
TTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACA
TATACATATCTCATATAT
Found at i:67155575 original size:20 final size:19
Alignment explanation
Indices: 67155537--67155575 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
67155527 TGGTACACAG
* *
67155537 TTTGGCCACACGACTATGT
1 TTTGGCCACACAACCATGT
67155556 TTTGAGCCACACAACCATGT
1 TTTG-GCCACACAACCATGT
67155576 GACCCCTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (19 bp):
TTTGGCCACACAACCATGT
Found at i:67158370 original size:14 final size:14
Alignment explanation
Indices: 67158351--67158381 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
67158341 GCACACGACC
67158351 TGTTCACACGGGCG
1 TGTTCACACGGGCG
67158365 TGTTCACACGGGCG
1 TGTTCACACGGGCG
67158379 TGT
1 TGT
67158382 AACCCTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.26, G:0.35, T:0.26
Consensus pattern (14 bp):
TGTTCACACGGGCG
Found at i:67163204 original size:21 final size:20
Alignment explanation
Indices: 67163165--67163204 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
67163155 ATACTTGAGT
*
67163165 ATTTTGATGTTTAATGATAG
1 ATTTTGATGCTTAATGATAG
*
67163185 ATTTTGAATGCTTGATGATA
1 ATTTTG-ATGCTTAATGATA
67163205 ATTATACAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (20 bp):
ATTTTGATGCTTAATGATAG
Found at i:67169431 original size:28 final size:28
Alignment explanation
Indices: 67169370--67169467 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
67169360 TCACAAATTG
** * *
67169370 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
67169399 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
67169427 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
67169455 GCACTAAGTGTGC
1 GCACTAAGTGTGC
67169468 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:67182280 original size:72 final size:72
Alignment explanation
Indices: 67182199--67182344 Score: 283
Period size: 72 Copynumber: 2.0 Consensus size: 72
67182189 AAAAAGACTG
*
67182199 GTTCTGGTGAATTAGCTTTGAACTAAAACAATTATGCTTTATTTCTTGTGAAGTAGAACCCATAT
1 GTTCTGGTGAATTAGCTTTGAACTAAAACAATTATGCTTTATTTCATGTGAAGTAGAACCCATAT
67182264 TTTACAT
66 TTTACAT
67182271 GTTCTGGTGAATTAGCTTTGAACTAAAACAATTATGCTTTATTTCATGTGAAGTAGAACCCATAT
1 GTTCTGGTGAATTAGCTTTGAACTAAAACAATTATGCTTTATTTCATGTGAAGTAGAACCCATAT
67182336 TTTACAT
66 TTTACAT
67182343 GT
1 GT
67182345 GTAGTGCTTT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.40
Consensus pattern (72 bp):
GTTCTGGTGAATTAGCTTTGAACTAAAACAATTATGCTTTATTTCATGTGAAGTAGAACCCATAT
TTTACAT
Found at i:67191864 original size:27 final size:27
Alignment explanation
Indices: 67191826--67191882 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
67191816 TGATGATGAC
67191826 AATCATTAGTTTTATATTTATAATTAT
1 AATCATTAGTTTTATATTTATAATTAT
67191853 AATCATTAGTTTTATATTTATAATTAT
1 AATCATTAGTTTTATATTTATAATTAT
67191880 AAT
1 AAT
67191883 TAATAAGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.54
Consensus pattern (27 bp):
AATCATTAGTTTTATATTTATAATTAT
Found at i:67191896 original size:21 final size:21
Alignment explanation
Indices: 67191872--67191917 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
67191862 TTTTATATTT
*
67191872 ATAATTATAATTAA-TAAGTAA
1 ATAATTAT-ATTAATTAAGCAA
*
67191893 ATAATTATCTTAATTAAGCAA
1 ATAATTATATTAATTAAGCAA
67191914 ATAA
1 ATAA
67191918 AACATGATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.37
Consensus pattern (21 bp):
ATAATTATATTAATTAAGCAA
Found at i:67192572 original size:2 final size:2
Alignment explanation
Indices: 67192565--67192639 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
67192555 TATCATTATC
67192565 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
67192607 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67192640 GCTTTATTGC
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:67194719 original size:26 final size:26
Alignment explanation
Indices: 67194690--67194858 Score: 90
Period size: 26 Copynumber: 6.8 Consensus size: 26
67194680 TCCTCTCTCA
67194690 AGCCATATAA-CAGGAAGCTCACAAAG
1 AGCCAT-TAATCAGGAAGCTCACAAAG
*
67194716 AGCCATTAATCGGGAAGCTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* *
67194742 AGCCTATT-A--A-GAAGCTTATC--CG
1 AGCC-ATTAATCAGGAAGCTCA-CAAAG
* * * *
67194764 GGCTACGTAA-CAGGAAGCTCA-TAAG
1 AGCCA-TTAATCAGGAAGCTCACAAAG
*
67194789 AGCCA-TAATCAGGAAGTTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* ** ** *
67194814 AACTTTTAATCAAAAAGCTCACTAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
*
67194840 AGCCTTTAATCAGG-AGCTC
1 AGCCATTAATCAGGAAGCTC
67194859 TGGGTAGCTA
Statistics
Matches: 107, Mismatches: 24, Indels: 25
0.69 0.15 0.16
Matches are distributed among these distances:
21 1 0.01
22 4 0.04
23 11 0.10
24 12 0.11
25 24 0.22
26 52 0.49
27 3 0.03
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
AGCCATTAATCAGGAAGCTCACAAAG
Found at i:67200669 original size:19 final size:18
Alignment explanation
Indices: 67200641--67200681 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
67200631 TATTTTAATA
67200641 TTTTTATAGAAATTTTTAT
1 TTTTTATAG-AATTTTTAT
* *
67200660 TTTTTTTAGAATTTTTCT
1 TTTTTATAGAATTTTTAT
67200678 TTTT
1 TTTT
67200682 CCTTTTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (18 bp):
TTTTTATAGAATTTTTAT
Found at i:67206061 original size:10 final size:10
Alignment explanation
Indices: 67206054--67206080 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
67206044 TATTGACATT
67206054 TTTTGACAAG
1 TTTTGACAAG
67206064 TTTTGACAAG
1 TTTTGACAAG
67206074 TTTTGAC
1 TTTTGAC
67206081 TATTTTCGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.19, T:0.44
Consensus pattern (10 bp):
TTTTGACAAG
Found at i:67216508 original size:46 final size:46
Alignment explanation
Indices: 67216386--67216519 Score: 157
Period size: 46 Copynumber: 2.9 Consensus size: 46
67216376 TGTAACCCGC
*
67216386 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCTAG-T
* *** * *
67216432 ACATTTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTA-T
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCCTAGT
67216479 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCC
67216520 AACCATCCTA
Statistics
Matches: 72, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
44 3 0.04
46 32 0.44
47 32 0.44
49 5 0.07
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCCTAGT
Found at i:67220318 original size:18 final size:18
Alignment explanation
Indices: 67220295--67220330 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
67220285 CACATATGTA
67220295 TCATAAACTTTTATTCAT
1 TCATAAACTTTTATTCAT
67220313 TCATAAACTTTTATTCAT
1 TCATAAACTTTTATTCAT
67220331 ACTTTTCTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (18 bp):
TCATAAACTTTTATTCAT
Found at i:67222021 original size:46 final size:46
Alignment explanation
Indices: 67221934--67222021 Score: 158
Period size: 46 Copynumber: 1.9 Consensus size: 46
67221924 CGGACTCAAC
*
67221934 TCGCATCCATAAGTGAACTCGGACTCAACTCAACAATCTCGGGCGT
1 TCGCATCCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGT
*
67221980 TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
1 TCGCATCCATAAGTGAACTCGGACTCAACTCAACAAGCTCGG
67222022 ATGCCTAGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.20
Consensus pattern (46 bp):
TCGCATCCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGT
Found at i:67222075 original size:122 final size:122
Alignment explanation
Indices: 67221858--67222089 Score: 455
Period size: 122 Copynumber: 1.9 Consensus size: 122
67221848 ATGTAACCCG
67221858 TCGCACCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAAC
1 TCGCACCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAAC
67221923 TCGGACTCAACTCGCATCCATAAGTGAACTCGGACTCAACTCAACAATCTCGGGCGT
66 TCGGACTCAACTCGCATCCATAAGTGAACTCGGACTCAACTCAACAATCTCGGGCGT
*
67221980 TCGCATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAAC
1 TCGCACCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAAC
67222045 TCGGACTCAACTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
66 TCGGACTCAACTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
67222090 GAGTTCGGAT
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 109 1.00
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (122 bp):
TCGCACCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTCGAAC
TCGGACTCAACTCGCATCCATAAGTGAACTCGGACTCAACTCAACAATCTCGGGCGT
Found at i:67225364 original size:28 final size:28
Alignment explanation
Indices: 67225332--67225385 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
67225322 AATGATCTGT
67225332 TAGACTGAAATATGGTTATGAGCATGTC
1 TAGACTGAAATATGGTTATGAGCATGTC
67225360 TAGACTGAAATATGGTTATGAGCATG
1 TAGACTGAAATATGGTTATGAGCATG
67225386 CCTATGTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.31
Consensus pattern (28 bp):
TAGACTGAAATATGGTTATGAGCATGTC
Found at i:67230155 original size:23 final size:25
Alignment explanation
Indices: 67230123--67230168 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
67230113 TTTTGAATAT
*
67230123 TTTTTGATAAA-ATTTC-AAAAACC
1 TTTTTCATAAATATTTCTAAAAACC
67230146 TTTTTCATAAATATTTCTAAAAA
1 TTTTTCATAAATATTTCTAAAAA
67230169 ACAATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 5 0.25
25 5 0.25
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.43
Consensus pattern (25 bp):
TTTTTCATAAATATTTCTAAAAACC
Found at i:67231073 original size:17 final size:19
Alignment explanation
Indices: 67231047--67231084 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
67231037 ATCTTTAAAA
67231047 TTTAAAATTA-AAT-TATT
1 TTTAAAATTACAATATATT
*
67231064 TTTAAGATTACAATATATT
1 TTTAAAATTACAATATATT
67231083 TT
1 TT
67231085 ACCATTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 3 0.17
19 6 0.33
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (19 bp):
TTTAAAATTACAATATATT
Found at i:67233252 original size:135 final size:135
Alignment explanation
Indices: 67233010--67233284 Score: 541
Period size: 135 Copynumber: 2.0 Consensus size: 135
67233000 TATGATGCAT
67233010 TTTGGGGTAAGGTGGGGTGCTAGGGGTACAATGACCGTTTAATGAAATGGTGAGTTTTGTCTTGT
1 TTTGGGGTAAGGTGGGGTGCTAGGGGTACAATGACCGTTTAATGAAATGGTGAGTTTTGTCTTGT
67233075 TACGAAAACTGCTATAATCCGTTTTTTCCTTTTTTTAGCCACCAATAAGGCAAAGATGGTGGTTA
66 TACGAAAACTGCTATAATCCGTTTTTTCCTTTTTTTAGCCACCAATAAGGCAAAGATGGTGGTTA
67233140 TGAAA
131 TGAAA
*
67233145 TTTGGGGTAAGGTGGGGTGCTAGGGGTACAATGACGGTTTAATGAAATGGTGAGTTTTGTCTTGT
1 TTTGGGGTAAGGTGGGGTGCTAGGGGTACAATGACCGTTTAATGAAATGGTGAGTTTTGTCTTGT
67233210 TACGAAAACTGCTATAATCCGTTTTTTCCTTTTTTTAGCCACCAATAAGGCAAAGATGGTGGTTA
66 TACGAAAACTGCTATAATCCGTTTTTTCCTTTTTTTAGCCACCAATAAGGCAAAGATGGTGGTTA
67233275 TGAAA
131 TGAAA
67233280 TTTGG
1 TTTGG
67233285 AATTGGCTTT
Statistics
Matches: 139, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
135 139 1.00
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.35
Consensus pattern (135 bp):
TTTGGGGTAAGGTGGGGTGCTAGGGGTACAATGACCGTTTAATGAAATGGTGAGTTTTGTCTTGT
TACGAAAACTGCTATAATCCGTTTTTTCCTTTTTTTAGCCACCAATAAGGCAAAGATGGTGGTTA
TGAAA
Found at i:67236722 original size:8 final size:8
Alignment explanation
Indices: 67236687--67236729 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
67236677 GTACTTAAGT
67236687 ATAATATA
1 ATAATATA
*
67236695 AGAATATA
1 ATAATATA
* *
67236703 TTAATATG
1 ATAATATA
67236711 ATAATATA
1 ATAATATA
*
67236719 ATAAAATA
1 ATAATATA
67236727 ATA
1 ATA
67236730 CAATAAAACA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (8 bp):
ATAATATA
Done.