Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 222 of 425
Found at i:67238040 original size:16 final size:15
Alignment explanation
Indices: 67237994--67238042 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
67237984 GGATGATGAG
67237994 TTTTATGAAATTGATTA
1 TTTTATG-AA-TGATTA
*
67238011 TTTTTTGAATGATTA
1 TTTTATGAATGATTA
*
67238026 TTATTATGTATGATTA
1 TT-TTATGAATGATTA
67238042 T
1 T
67238043 GTATATAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 8 0.29
16 14 0.50
17 6 0.21
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.57
Consensus pattern (15 bp):
TTTTATGAATGATTA
Found at i:67242835 original size:22 final size:22
Alignment explanation
Indices: 67242781--67242836 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
67242771 AACATTCCTG
* *
67242781 AATGGAAATGAGACTGCATTAC
1 AATGGAAATGGGAATGCATTAC
67242803 AATGGAAATGGGAATGCATTAC
1 AATGGAAATGGGAATGCATTAC
*
67242825 AATGGACATGGG
1 AATGGAAATGGG
67242837 CTAAATTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.39, C:0.11, G:0.29, T:0.21
Consensus pattern (22 bp):
AATGGAAATGGGAATGCATTAC
Found at i:67244010 original size:13 final size:13
Alignment explanation
Indices: 67243980--67244004 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67243970 AGAACATGGG
67243980 AGAAAGAAAAAAA
1 AGAAAGAAAAAAA
67243993 AGAAAGAAAAAA
1 AGAAAGAAAAAA
67244005 TGGAAATTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AGAAAGAAAAAAA
Found at i:67251162 original size:46 final size:46
Alignment explanation
Indices: 67251112--67251287 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
67251102 TGGTTGAGCA
67251112 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67251158 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67251203 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67251251 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67251288 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67251268 original size:93 final size:93
Alignment explanation
Indices: 67251109--67251280 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67251099 GGATGGTTGA
* *
67251109 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67251174 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
67251202 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67251267 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
67251281 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67258738 original size:46 final size:46
Alignment explanation
Indices: 67258688--67258863 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
67258678 TGGTTGAGCA
67258688 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67258734 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67258779 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
67258827 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67258864 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67258844 original size:93 final size:93
Alignment explanation
Indices: 67258685--67258856 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
67258675 GGATGGTTGA
* *
67258685 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67258750 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
67258778 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
67258843 TGAGTCTGAGTTCG
66 TGAGTCCGAGTTCG
67258857 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67261838 original size:20 final size:21
Alignment explanation
Indices: 67261807--67261846 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
67261797 TTTTACTTTC
*
67261807 CATAATCTCAATATCGCATTT
1 CATAATCTCAATATCACATTT
67261828 CATAA-CTCAATATCACATT
1 CATAATCTCAATATCACATT
67261847 CACTTTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.35
Consensus pattern (21 bp):
CATAATCTCAATATCACATTT
Found at i:67261888 original size:37 final size:37
Alignment explanation
Indices: 67261831--67261905 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
67261821 CGCATTTCAT
* * *
67261831 AACTCAATATCACATTCACTTTAGTTATCTATTAATC
1 AACTCAATATCACATCCACTTCAATTATCTATTAATC
*
67261868 AACTCAATATCATATCCACTTCAATTATCTATTAATC
1 AACTCAATATCACATCCACTTCAATTATCTATTAATC
67261905 A
1 A
67261906 TTCATTAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.37, C:0.23, G:0.01, T:0.39
Consensus pattern (37 bp):
AACTCAATATCACATCCACTTCAATTATCTATTAATC
Found at i:67276394 original size:96 final size:97
Alignment explanation
Indices: 67276278--67276457 Score: 249
Period size: 99 Copynumber: 1.8 Consensus size: 97
67276268 GGTATAATGC
* *
67276278 CGATGCCATGTCCCAGACATGGTCTCACACT-CTCTCATC-CATCAAGT-TAATGCCATGTCCCA
1 CGATGCCATATCCCAGACATGGTCTCACACTACTCTCA-CACATC-AGTCCAATGCCATGTCCCA
67276340 GACATGGTCTTACACTGACTATCGAAATCGACGT
64 GACATGGTCTTACACTGACTATCGAAATCGACGT
* * *
67276374 CGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCAATGCCATGTCCCA
1 CGATGCCATATCCCAGACATGGTCTCACACTA-CTCTCACACATCAGT-CCAATGCCATGTCCCA
*
67276439 GGCATGGTCTTACACTGAC
64 GACATGGTCTTACACTGAC
67276458 ACATCTCGTA
Statistics
Matches: 73, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
96 29 0.40
97 3 0.04
98 9 0.12
99 32 0.44
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (97 bp):
CGATGCCATATCCCAGACATGGTCTCACACTACTCTCACACATCAGTCCAATGCCATGTCCCAGA
CATGGTCTTACACTGACTATCGAAATCGACGT
Found at i:67276474 original size:96 final size:96
Alignment explanation
Indices: 67276276--67276498 Score: 255
Period size: 96 Copynumber: 2.3 Consensus size: 96
67276266 AGGGTATAAT
* *
67276276 GCCGATGCCATGTCCCAGACATGGTCTCACACTCTCTCATCCATCAAGTTAATGCCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTCTCTCATCCATCAAGTCAATGCCATGTCCCAG
67276341 ACATGGTCTTACACTGACTATCGAAATCGAC
66 ACATGGTCTTACACTGACTATCGAAATCGAC
* * * *
67276372 GTCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCA-CATATC-TGTGCCAATGCCATGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT--CTCTCATC-CATCAAGT--CAATGCCATGT
* **
67276435 CCCAGGCATGGTCTTACACTGAC-A-C-ATCTCGTA-
61 CCCAGACATGGTCTTACACTGACTATCGAAATCG-AC
67276468 GCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
67276499 GGCTTACATC
Statistics
Matches: 110, Mismatches: 11, Indels: 14
0.81 0.08 0.10
Matches are distributed among these distances:
94 10 0.09
95 13 0.12
96 40 0.36
97 5 0.05
98 10 0.09
99 32 0.29
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTCTCTCATCCATCAAGTCAATGCCATGTCCCAG
ACATGGTCTTACACTGACTATCGAAATCGAC
Found at i:67276518 original size:46 final size:46
Alignment explanation
Indices: 67276276--67276547 Score: 223
Period size: 46 Copynumber: 5.8 Consensus size: 46
67276266 AGGGTATAAT
* ** *
67276276 GCCGATGCCATGTCCCAGACATGGTCTCACACTCTCT-CATCCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACAT--ATCGA
*** * *
67276323 GTTAATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-C-ATATCGA
* * * *
67276371 CGTCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCACATATCTGT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCT-ACATATC-GA
* * * *
67276422 GCCAATGCCATGTCCCAGGCATGGTCTTACACTGAC-ACATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATATCG-A
*
67276468 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TACATATCGA
*
67276513 GGCCGATG-CATGTCCTAGACAT-GTCTTACACTGGC
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC
67276548 ACACAAATAA
Statistics
Matches: 188, Mismatches: 25, Indels: 25
0.79 0.11 0.11
Matches are distributed among these distances:
44 12 0.06
45 15 0.08
46 53 0.28
47 31 0.16
48 5 0.03
49 32 0.17
50 35 0.19
51 4 0.02
52 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTACATATCGA
Found at i:67279911 original size:16 final size:16
Alignment explanation
Indices: 67279877--67279928 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
67279867 TCTTTCTTCT
* *
67279877 TTTCTTTCCTT-TTTC
1 TTTCTTTCCTTCTCTA
67279892 TTTCTTTCCTTCTCTA
1 TTTCTTTCCTTCTCTA
* **
67279908 TTTCGTTATTTCTCTA
1 TTTCTTTCCTTCTCTA
67279924 TTTCT
1 TTTCT
67279929 ATTTCTTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 11 0.37
16 19 0.63
ACGTcount: A:0.06, C:0.25, G:0.02, T:0.67
Consensus pattern (16 bp):
TTTCTTTCCTTCTCTA
Found at i:67282569 original size:13 final size:13
Alignment explanation
Indices: 67282551--67282577 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67282541 AACACTTGCA
67282551 AAACAATTCTGAC
1 AAACAATTCTGAC
67282564 AAACAATTCTGAC
1 AAACAATTCTGAC
67282577 A
1 A
67282578 TGTTGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.07, T:0.22
Consensus pattern (13 bp):
AAACAATTCTGAC
Found at i:67284505 original size:21 final size:22
Alignment explanation
Indices: 67284465--67284506 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
67284455 CATAACGTAA
*
67284465 TCAATTCTTATCAATTGCTATC
1 TCAATTCTCATCAATTGCTATC
*
67284487 TCAATTCTCAT-AGTTGCTAT
1 TCAATTCTCATCAATTGCTAT
67284507 ACAAATAGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.26, C:0.21, G:0.07, T:0.45
Consensus pattern (22 bp):
TCAATTCTCATCAATTGCTATC
Found at i:67288189 original size:103 final size:101
Alignment explanation
Indices: 67287997--67288217 Score: 397
Period size: 103 Copynumber: 2.2 Consensus size: 101
67287987 AACATGACAC
* * *
67287997 TCAAACACACCAATCCACAAACAGACAGACAGATAGAGTACAGTCAAATAGCCAAGCACCCTGAA
1 TCAAACTCACCCATCCACAAACAGACAGACAGACAGAGTACAGTCAAATAGCCAAGCACCCTGAA
67288062 CATACAAACAAATGTGGATGAAATGTAGTCAAGTAA
66 CATACAAACAAATGTGGATGAAATGTAGTCAAGTAA
67288098 TCAAACTCACCCATCCACAAACAGACAGACAGACAGAGTACAGTCAAATATAGCCAAGCACCCTG
1 TCAAACTCACCCATCCACAAACAGACAGACAGACAGAGTACAGTC-AA-ATAGCCAAGCACCCTG
67288163 AACATACAAACAAATGTGGATGAAATGTAGTCAAGTAA
64 AACATACAAACAAATGTGGATGAAATGTAGTCAAGTAA
67288201 TCAAACTCACCCATCCA
1 TCAAACTCACCCATCCA
67288218 GCCAACACAC
Statistics
Matches: 115, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
101 42 0.37
102 2 0.02
103 71 0.62
ACGTcount: A:0.45, C:0.25, G:0.14, T:0.15
Consensus pattern (101 bp):
TCAAACTCACCCATCCACAAACAGACAGACAGACAGAGTACAGTCAAATAGCCAAGCACCCTGAA
CATACAAACAAATGTGGATGAAATGTAGTCAAGTAA
Found at i:67292899 original size:49 final size:49
Alignment explanation
Indices: 67292840--67293071 Score: 297
Period size: 49 Copynumber: 4.7 Consensus size: 49
67292830 CTGGTACGCA
*
67292840 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTAGTACACG
* **
67292889 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCT-GATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTAG-TACACG
* * * * *
67292939 TAGTAGCCCGCACTTAGTACTACACACGTGATCGAAGTTATC-AGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTA-GTACACG
* *
67292990 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTAGTACACG
*
67293039 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
67293072 TCACAATAGC
Statistics
Matches: 157, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
49 73 0.46
50 47 0.30
51 36 0.23
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTAGTACACG
Found at i:67295783 original size:15 final size:15
Alignment explanation
Indices: 67295754--67295792 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
67295744 AACAGAGAAG
67295754 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
67295770 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
67295785 CCATGATA
1 CCAAGATA
67295793 CGAGAATCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:67298484 original size:51 final size:50
Alignment explanation
Indices: 67298296--67298591 Score: 371
Period size: 51 Copynumber: 5.9 Consensus size: 50
67298286 TAGCCGAAGC
* * *
67298296 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAT
* * * *
67298345 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAT
* * * *
67298395 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA-T
* * *
67298446 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA-T
* * * * *
67298497 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCG-CCCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAT
* *
67298546 TATCTGGTACACGTAGTAGCCTGCACTTTGTACTACACACGTGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
67298592 TCACAATAGC
Statistics
Matches: 217, Mismatches: 27, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
49 79 0.36
50 51 0.24
51 87 0.40
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCGAAT
Found at i:67303285 original size:21 final size:21
Alignment explanation
Indices: 67303242--67303342 Score: 60
Period size: 21 Copynumber: 4.7 Consensus size: 21
67303232 GGGAGGTCAA
*
67303242 ACGCCCGTGTGA-GGAGGGGCAC
1 ACGCCCGTGTGACTGA--GGCAC
67303264 ACGCCCGTGTGACTGAGGCAC
1 ACGCCCGTGTGACTGAGGCAC
** * **
67303285 ATACCCATGTGAAGAGAGGCAC
1 ACGCCCGTGTG-ACTGAGGCAC
** * * *
67303307 ACGATCGTATAACTGAAGCAC
1 ACGCCCGTGTGACTGAGGCAC
67303328 ACGCCCGTGTAGACT
1 ACGCCCGTGT-GACT
67303343 AGGGACAAGG
Statistics
Matches: 56, Mismatches: 20, Indels: 6
0.68 0.24 0.07
Matches are distributed among these distances:
21 27 0.48
22 27 0.48
23 2 0.04
ACGTcount: A:0.27, C:0.28, G:0.31, T:0.15
Consensus pattern (21 bp):
ACGCCCGTGTGACTGAGGCAC
Found at i:67306021 original size:29 final size:29
Alignment explanation
Indices: 67305957--67306055 Score: 150
Period size: 28 Copynumber: 3.5 Consensus size: 29
67305947 AATGAGATTG
67305957 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
*
67305985 GCACTAAGTGTGCAAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
*
67306014 GCATTAAGTGTGCGAGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
67306042 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
67306056 GACTTACTGT
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
28 32 0.49
29 32 0.49
30 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.33
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:67307924 original size:47 final size:47
Alignment explanation
Indices: 67307855--67307984 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
67307845 GCTGCGAATA
* * * *
67307855 TTACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGACGAG
1 TTACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCGAGACAAG
* * * *
67307902 TTACCCTGATTTGGCTATGGGCCATGGTATAGGTACTTCGGGATAAG
1 TTACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCGAGACAAG
* *
67307949 TTACCTTGATTTGGCTACAGGCTATGGTATAGGTAC
1 TTACCTTGATTTGGCTACGGGCCATGGTATAGGTAC
67307985 CTATCGATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (47 bp):
TTACCTTGATTTGGCTACGGGCCATGGTATAGGTACTTCGAGACAAG
Found at i:67311081 original size:15 final size:15
Alignment explanation
Indices: 67311061--67311094 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
67311051 TAATTTGAAT
67311061 ATATGATTGGTGTAA
1 ATATGATTGGTGTAA
*
67311076 ATATGATTGTTGTAA
1 ATATGATTGGTGTAA
67311091 ATAT
1 ATAT
67311095 CAAATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (15 bp):
ATATGATTGGTGTAA
Found at i:67312264 original size:16 final size:15
Alignment explanation
Indices: 67312242--67312284 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
67312232 CACTATTAAT
67312242 TTAAAATTTTATAAA
1 TTAAAATTTTATAAA
** *
67312257 TTATAAATAGTCTAAA
1 TTA-AAATTTTATAAA
67312273 TTAAAATTTTAT
1 TTAAAATTTTAT
67312285 TATTTTAGGG
Statistics
Matches: 21, Mismatches: 6, Indels: 2
0.72 0.21 0.07
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
TTAAAATTTTATAAA
Found at i:67318091 original size:16 final size:15
Alignment explanation
Indices: 67318072--67318123 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
67318062 CCTTTTAAGT
67318072 TTTTTTCTTTATTTA
1 TTTTTTCTTTATTTA
** *
67318087 CTTTTTAAGTTTTTTTAA
1 -TTTTT-TCTTTATTT-A
67318105 TTTTTTCTTTATTTA
1 TTTTTTCTTTATTTA
67318120 TTTT
1 TTTT
67318124 ATTTATTTGT
Statistics
Matches: 28, Mismatches: 6, Indels: 5
0.72 0.15 0.13
Matches are distributed among these distances:
15 5 0.18
16 11 0.39
17 11 0.39
18 1 0.04
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTTTCTTTATTTA
Found at i:67318091 original size:17 final size:16
Alignment explanation
Indices: 67318071--67318138 Score: 55
Period size: 17 Copynumber: 4.1 Consensus size: 16
67318061 TCCTTTTAAG
67318071 TTTTTTTCTTTATTTA
1 TTTTTTTCTTTATTTA
*** *
67318087 CTTTTTAAGTTTTTTTA
1 -TTTTTTTCTTTATTTA
*
67318104 ATTTTTTCTTTATTTA
1 TTTTTTTCTTTATTTA
* *
67318120 TTTTATTTATTTGTTTA
1 TTTT-TTTCTTTATTTA
67318137 TT
1 TT
67318139 ATTGGTTTTA
Statistics
Matches: 38, Mismatches: 12, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
16 14 0.37
17 24 0.63
ACGTcount: A:0.16, C:0.04, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTTTTTCTTTATTTA
Found at i:67318123 original size:21 final size:21
Alignment explanation
Indices: 67318099--67318138 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
67318089 TTTTAAGTTT
67318099 TTTTAATTT-TTTCTTTATTTA
1 TTTT-ATTTATTTCTTTATTTA
*
67318120 TTTTATTTATTTGTTTATT
1 TTTTATTTATTTCTTTATT
67318139 ATTGGTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.78
Consensus pattern (21 bp):
TTTTATTTATTTCTTTATTTA
Found at i:67318230 original size:37 final size:36
Alignment explanation
Indices: 67318176--67318260 Score: 109
Period size: 37 Copynumber: 2.3 Consensus size: 36
67318166 ATTAGAAATG
*
67318176 TTTTATAATATTATTTTTTAAAATCTTAAACATATAT
1 TTTTAAAATATTATTTTTTAAAATCTTAAACATAT-T
* *
67318213 TTTTAAAATTATT-TTTTTTAAAATTTTAAATATATT
1 TTTTAAAA-TATTATTTTTTAAAATCTTAAACATATT
67318249 TTTTAATAATAT
1 TTTTAA-AATAT
67318261 AAAACATTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
36 10 0.23
37 29 0.67
38 4 0.09
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (36 bp):
TTTTAAAATATTATTTTTTAAAATCTTAAACATATT
Found at i:67318364 original size:21 final size:21
Alignment explanation
Indices: 67318317--67318384 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 21
67318307 TATTATTTGT
*
67318317 TTTATAATATTTTAAATGTATA
1 TTTATAAT-TTTTAAATATATA
*
67318339 TTTTAAAATTTTTAAATATATA
1 -TTTATAATTTTTAAATATATA
*
67318361 TTTATTTATTTTTAAATATA-A
1 TTTA-TAATTTTTAAATATATA
67318382 TTT
1 TTT
67318385 TTTAAATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.20
22 25 0.62
23 7 0.17
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (21 bp):
TTTATAATTTTTAAATATATA
Found at i:67318399 original size:15 final size:14
Alignment explanation
Indices: 67318369--67318406 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
67318359 TATTTATTTA
67318369 TTTTTAAATATAAT
1 TTTTTAAATATAAT
*
67318383 TTTTTAAATAATGAT
1 TTTTTAAAT-ATAAT
67318398 TTTTTAAAT
1 TTTTTAAAT
67318407 TATTTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (14 bp):
TTTTTAAATATAAT
Found at i:67318535 original size:18 final size:18
Alignment explanation
Indices: 67318514--67318548 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
67318504 ATAAAAACTA
67318514 ATTTATTTGTTAAAAAAG
1 ATTTATTTGTTAAAAAAG
67318532 ATTTATTTGTTAAAAAA
1 ATTTATTTGTTAAAAAA
67318549 ATTATGGCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.09, T:0.46
Consensus pattern (18 bp):
ATTTATTTGTTAAAAAAG
Found at i:67318608 original size:21 final size:21
Alignment explanation
Indices: 67318561--67318619 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
67318551 TATGGCTTTT
67318561 TTAAAATATATATATTAAAAAA
1 TTAAAA-ATATATATTAAAAAA
* * * *
67318583 ATAAAAATTTATATTAGAAAG
1 TTAAAAATATATATTAAAAAA
*
67318604 TTAAAAATATCTATTA
1 TTAAAAATATATATTA
67318620 TAACTATCAC
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 25 0.83
22 5 0.17
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (21 bp):
TTAAAAATATATATTAAAAAA
Found at i:67318819 original size:14 final size:15
Alignment explanation
Indices: 67318800--67318836 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
67318790 GAGTAAGTTA
67318800 TTTATAGTTTT-TAT
1 TTTATAGTTTTATAT
67318814 TTTATA-TTTTATAT
1 TTTATAGTTTTATAT
67318828 TTTATAGTT
1 TTTATAGTT
67318837 ATTGTAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.19
14 15 0.71
15 2 0.10
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.70
Consensus pattern (15 bp):
TTTATAGTTTTATAT
Found at i:67318823 original size:7 final size:7
Alignment explanation
Indices: 67318800--67318833 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
67318790 GAGTAAGTTA
67318800 TTTATAGT
1 TTTATA-T
67318808 TTT-TAT
1 TTTATAT
67318814 TTTATAT
1 TTTATAT
67318821 TTTATAT
1 TTTATAT
67318828 TTTATA
1 TTTATA
67318834 GTTATTGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 4 0.16
7 18 0.72
8 3 0.12
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (7 bp):
TTTATAT
Found at i:67324601 original size:23 final size:22
Alignment explanation
Indices: 67324569--67324611 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
67324559 AAATTTTAAA
67324569 AATTTAAATATAATTTAAAAAAG
1 AATTTAAATAT-ATTTAAAAAAG
* *
67324592 AATTTGAATATCTTTAAAAA
1 AATTTAAATATATTTAAAAA
67324612 TAATTTTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (22 bp):
AATTTAAATATATTTAAAAAAG
Found at i:67324761 original size:20 final size:21
Alignment explanation
Indices: 67324725--67324792 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
67324715 TTTTAATATT
* *
67324725 AAAATTATATTTAAAATTGAA
1 AAAATAATATTTAAAATTAAA
* *
67324746 AAAATAATATTTAAATTTTAA
1 AAAATAATATTTAAAATTAAA
67324767 AAAAT-ATATTTAAAATTAAA
1 AAAATAATATTTAAAATTAAA
67324787 AAAATA
1 AAAATA
67324793 CTCACATTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
20 18 0.44
21 23 0.56
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (21 bp):
AAAATAATATTTAAAATTAAA
Found at i:67326807 original size:3 final size:3
Alignment explanation
Indices: 67326799--67326840 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
67326789 TAACAAGTAA
67326799 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
67326841 ATAAATTGCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:67327214 original size:2 final size:2
Alignment explanation
Indices: 67327207--67327234 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
67327197 ATGTAAAATA
67327207 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67327235 GTTTTTAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67327835 original size:27 final size:28
Alignment explanation
Indices: 67327787--67327840 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 28
67327777 AAACCCAAAT
* * * *
67327787 AATATACTCATTATTACCCAAA-CTCAA
1 AATAAACTAATTATAACACAAATCTCAA
67327814 AATAAACTAATTATAACACAAATCTCA
1 AATAAACTAATTATAACACAAATCTCA
67327841 TGTCCAAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (28 bp):
AATAAACTAATTATAACACAAATCTCAA
Found at i:67328805 original size:16 final size:17
Alignment explanation
Indices: 67328784--67328816 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
67328774 ATAATTATAG
67328784 TATTAAA-AATATTTTA
1 TATTAAATAATATTTTA
67328800 TATTAAATTAATATTTT
1 TATTAAA-TAATATTTT
67328817 TAAAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTAAATAATATTTTA
Found at i:67328808 original size:29 final size:32
Alignment explanation
Indices: 67328767--67328847 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 32
67328757 ATATTTTTAG
67328767 TATATATATAATT-ATAGTATTAAAAA-TATTT
1 TATAT-TATAATTAATAGTATTAAAAATTATTT
* *
67328798 TATATTA-AATTAATATTTTTAAAAATTTATTT
1 TATATTATAATTAATAGTATTAAAAA-TTATTT
*
67328830 TATTTTATAATTTAATAG
1 TATATTATAA-TTAATAG
67328848 AAAAATTATC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
29 4 0.10
30 13 0.32
31 5 0.12
32 11 0.27
33 2 0.05
34 6 0.15
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (32 bp):
TATATTATAATTAATAGTATTAAAAATTATTT
Found at i:67331263 original size:51 final size:51
Alignment explanation
Indices: 67331185--67331318 Score: 157
Period size: 51 Copynumber: 2.6 Consensus size: 51
67331175 ACAGATACCC
* * * *
67331185 AGTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACTTTCTTCACA-A-
1 AGTGGCCTGCACATAGTACCACACTTGTGA-TCAAAACCA-TCTCTT-ACATAT
*
67331236 AGTGGCCTTCACATAGTACCACACTTGTGATCAAAACCATCTCTTACATAT
1 AGTGGCCTGCACATAGTACCACACTTGTGATCAAAACCATCTCTTACATAT
* *
67331287 AGTGGCCTGCACTTAGTACCACACATGTGATC
1 AGTGGCCTGCACATAGTACCACACTTGTGATC
67331319 GAAGCTATCG
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
49 3 0.04
50 6 0.08
51 62 0.86
52 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (51 bp):
AGTGGCCTGCACATAGTACCACACTTGTGATCAAAACCATCTCTTACATAT
Found at i:67331346 original size:51 final size:50
Alignment explanation
Indices: 67331291--67331468 Score: 149
Period size: 50 Copynumber: 3.5 Consensus size: 50
67331281 ACATATAGTG
* * * *
67331291 GCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGGGTACGCATAATA
1 GCCTGCACTTAGTACTACACATGTGACCGAA-CCATCGGGTACACATAATA
* * * * ** *
67331342 GCCTGCACTTGGTACTACACATGCGACCTAACCATCTGGTACATGTAGTA
1 GCCTGCACTTAGTACTACACATGTGACCGAACCATCGGGTACACATAATA
* * ***** *
67331392 GCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAACACATAGTA
1 GCCTGCACTTAGTACTACACATGTGACC--GAACCATCGGGTACACATAATA
*
67331444 GCCTGCACATAGTACTACACATGTG
1 GCCTGCACTTAGTACTACACATGTG
67331469 TTTTCACAAC
Statistics
Matches: 102, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
50 38 0.37
51 26 0.25
52 38 0.37
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
GCCTGCACTTAGTACTACACATGTGACCGAACCATCGGGTACACATAATA
Found at i:67331449 original size:52 final size:50
Alignment explanation
Indices: 67331335--67331464 Score: 143
Period size: 52 Copynumber: 2.6 Consensus size: 50
67331325 ATCGGGTACG
* * * **
67331335 CATAATAGCCTGCACTTGGTACTACACATGCGACCTAACCATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGAAACA
** * * *
67331385 TGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCT--AACCATCTGAAACA
*
67331437 CATAGTAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
67331465 TGTGTTTTCA
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 30 0.46
52 35 0.54
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGAAACA
Found at i:67338395 original size:17 final size:19
Alignment explanation
Indices: 67338368--67338403 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
67338358 CCAATTGGGC
67338368 CGTGTTGGG-CCACACGGG
1 CGTGTTGGGCCCACACGGG
67338386 CGTG-TGGGCCCACACGGG
1 CGTGTTGGGCCCACACGGG
67338404 TAGGCCACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.11, C:0.31, G:0.44, T:0.14
Consensus pattern (19 bp):
CGTGTTGGGCCCACACGGG
Found at i:67338820 original size:40 final size:38
Alignment explanation
Indices: 67338756--67338838 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 38
67338746 GTACCTTATA
* * *
67338756 GTGTGTAGGGATGGATGGGTTGATTTTATCTCCATACATG
1 GTGTGCAGGGATGGATGGGCTGATTTTATC-CC-CACATG
67338796 GTGTGCAGGGATAGG-TGGGCTGATTTTATCCCCACATG
1 GTGTGCAGGGAT-GGATGGGCTGATTTTATCCCCACATG
67338834 GTGTG
1 GTGTG
67338839 TTCAGTTGGA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
38 10 0.26
39 2 0.05
40 25 0.64
41 2 0.05
ACGTcount: A:0.18, C:0.13, G:0.35, T:0.34
Consensus pattern (38 bp):
GTGTGCAGGGATGGATGGGCTGATTTTATCCCCACATG
Found at i:67344495 original size:29 final size:29
Alignment explanation
Indices: 67344463--67344564 Score: 116
Period size: 29 Copynumber: 3.5 Consensus size: 29
67344453 ATTTAAGCCT
* ***
67344463 GCACACATAGTGCCATACCCTTCCAGCTC
1 GCACACTTAGTGCCATATATTTCCAGCTC
** *
67344492 GCACACCCAGTGCCGTATATTTCCAGCAT-
1 GCACACTTAGTGCCATATATTTCCAGC-TC
*
67344521 GCACACTTAGTGCCATATATTTCCAGCAC
1 GCACACTTAGTGCCATATATTTCCAGCTC
67344550 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
67344565 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
29 60 0.98
30 1 0.02
ACGTcount: A:0.25, C:0.35, G:0.16, T:0.24
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCTC
Found at i:67350652 original size:29 final size:29
Alignment explanation
Indices: 67350620--67350692 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
67350610 CTTCGAGCTC
* *
67350620 GCACACCCAGTGCCGTTTATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
67350649 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
67350678 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
67350693 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:67353539 original size:13 final size:13
Alignment explanation
Indices: 67353521--67353561 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
67353511 CTGGACTTCT
67353521 TCACACGGGCGTG
1 TCACACGGGCGTG
67353534 TCACACGGGCGTG
1 TCACACGGGCGTG
*
67353547 TCACACGGTCGTG
1 TCACACGGGCGTG
67353560 TC
1 TC
67353562 CATTTCGTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.20
Consensus pattern (13 bp):
TCACACGGGCGTG
Found at i:67356903 original size:26 final size:24
Alignment explanation
Indices: 67356861--67356924 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 24
67356851 GATTATGTAG
67356861 AAAGAATAAAGAAATGAAAAAAAAAA
1 AAAGAA-AAAGAAATG-AAAAAAAAA
* * *
67356887 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAAAAAAAA
*
67356912 AAAGAAAAGGAAA
1 AAAGAAAAAGAAA
67356925 AAAAAAGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
24 1 0.03
25 22 0.69
26 9 0.28
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAAAAAAAA
Found at i:67358122 original size:29 final size:29
Alignment explanation
Indices: 67358089--67358153 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
67358079 GTGACGAGAT
*
67358089 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
67358118 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAAAATA
*
67358147 CGGCACT
1 TGGCACT
67358154 GGGTGTGCGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAAAATA
Found at i:67363021 original size:399 final size:399
Alignment explanation
Indices: 67362174--67363762 Score: 2833
Period size: 399 Copynumber: 4.0 Consensus size: 399
67362164 GAACAAATTG
* *
67362174 CTTAGTTATGTTTTGTTCTTCTAAATATTCAACTTGTTCATAAAAAAAAAACAATACTTACATAT
1 CTTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCAT--AAAAAAAACAATACTTACATAC
67362239 ATATTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCAC
64 ATATTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCAC
* * *
67362304 TTGTATTCAACTAATGACTAGTTATTTTTCTAGCTAGGTAAATTTTCAATTCAATATCGATTCTA
129 TTGTATTCAACTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTA
* * *
67362369 ACATCTTCTTTTAGCTTGTTACCACACCTCCTAACCAAAGCCACGTTACAACCCTCTAAAAGACC
194 ACATCTTCTTTCAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTCTAAAAGACC
*
67362434 TTTTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATCTGATTTTCAAGCAAGCTTATGGT
259 TTTTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATTTGATTTTCAAGCAAGCTTATGGT
*
67362499 AATAACTTTTCAAATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGA
324 AATAACTTTTCATATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGA
67362564 GTGAAACAATA
389 GTGAAACAATA
*
67362575 ATTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATACTTACATACAT
1 CTTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATACTTACATACAT
* * * *
67362640 ATTAGTAGTAATTCGTCACTTTTGAACTTGAGTGTCAATTCCATATTCTGAGAAAAAGCTCACTT
66 ATTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACTT
67362705 GTATTCAACTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTAAC
131 GTATTCAACTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTAAC
67362770 ATCTTCTTTCAGCTTGTGACCACACCCCCTAA-CAAAGCCACGTTACAACCCTCTAAAAGACCTT
196 ATCTTCTTTCAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTCTAAAAGACCTT
* **
67362834 TTTGATTGATGTATTAGAGCAATATATAGTGGTGGAGATTTGATTTTCCAA-CAAGCTTATGGTA
261 TTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATTTGATTTT-CAAGCAAGCTTATGGTA
67362898 ATAACTTTTCA-ATTTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGA
325 ATAACTTTTCATA-TTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGA
67362962 GTGAAACAATA
389 GTGAAACAATA
*
67362973 CTTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATATTTACATACAT
1 CTTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATACTTACATACAT
* * *
67363038 AGTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTTCATATTTTGAGAAGAAGCTCACTT
66 ATTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACTT
* * *
67363103 ATATTCAACTGATGGCTAGTTATTTTTCTAGCTAGGTAATTTTTTAATTCAATCTCGATTCTAAC
131 GTATTCAACTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTAAC
* *
67363168 ATCTTCTTTCATCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCATCTAAAAGACCTT
196 ATCTTCTTTCAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTCTAAAAGACCTT
67363233 TTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATTTGATTTTCAAGCAAGCTTATGGTAA
261 TTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATTTGATTTTCAAGCAAGCTTATGGTAA
67363298 TAACTTTTCATATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGAGT
326 TAACTTTTCATATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGAGT
67363363 GAAACAATA
391 GAAACAATA
67363372 CTTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATACTTACATACAT
1 CTTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATACTTACATACAT
67363437 ATTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACTT
66 ATTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACTT
*
67363502 GTATTCAATTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTAAC
131 GTATTCAACTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTAAC
* *
67363567 ATCTTCTTTTAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCTTCTAAAAGACCTT
196 ATCTTCTTTCAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTCTAAAAGACCTT
* *
67363632 TTTGATTGATGTATCAGCTCAATATATAGTGGTAGAAATTTGATTTTCAAGCAAGCTTATGGTAA
261 TTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATTTGATTTTCAAGCAAGCTTATGGTAA
67363697 TAACTTTTCATATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGAGT
326 TAACTTTTCATATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGAGT
67363762 G
391 G
67363763 TATCTCTAGT
Statistics
Matches: 1136, Mismatches: 47, Indels: 12
0.95 0.04 0.01
Matches are distributed among these distances:
397 1 0.00
398 378 0.33
399 717 0.63
400 1 0.00
401 39 0.03
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (399 bp):
CTTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATACTTACATACAT
ATTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACTT
GTATTCAACTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATCTCGATTCTAAC
ATCTTCTTTCAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTCTAAAAGACCTT
TTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATTTGATTTTCAAGCAAGCTTATGGTAA
TAACTTTTCATATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGAGT
GAAACAATA
Found at i:67363236 original size:797 final size:799
Alignment explanation
Indices: 67362174--67363762 Score: 2835
Period size: 797 Copynumber: 2.0 Consensus size: 799
67362164 GAACAAATTG
*
67362174 CTTAGTTATGTTTTGTTCTTCTAAATATTCAACTTGTTCATAAAAAAAAAACAATACTTACATAT
1 CTTAGTTATGTTTTGTTCTTCTAAATATTCAACTTGTTCAT-AAAAAAAAACAATACTTACATAC
*
67362239 ATATTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCAC
65 ATAGTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCAC
*
67362304 TTGTATTCAACTAATGACTAGTTATTTTTCTAGCTAGGTAAATTTTCAATTCAATATCGATTCTA
130 TTATATTCAACTAATGACTAGTTATTTTTCTAGCTAGGTAAATTTTCAATTCAATATCGATTCTA
* * * *
67362369 ACATCTTCTTTTAGCTTGTTACCACACCTCCTAACCAAAGCCACGTTACAACCCTCTAAAAGACC
195 ACATCTTCTTTCAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCATCTAAAAGACC
67362434 TTTTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATCTGATTTTCAAGCAAGCTTATGGT
260 TTTTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATCTGATTTTCAAGCAAGCTTATGGT
67362499 AATAACTTTTCAAATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGA
325 AATAACTTTTCAAATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGA
67362564 GTGAAACAATAATTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATA
390 GTGAAACAATAATTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATA
67362629 CTTACATACATATTAGTAGTAATTCGTCACTTTTGAACTTGAGTGTCAATTCCATATTCTGAGAA
455 CTTACATACATATTAGTAGTAATTCGTCACTTTTGAACTTGAGTGTCAATTCCATATTCTGAGAA
67362694 AAAGCTCACTTGTATTCAACTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATC
520 AAAGCTCACTTGTATTCAACTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATC
67362759 TCGATTCTAACATCTTCTTTCAGCTTGTGACCACACCCCCTAA-CAAAGCCACGTTACAACCCTC
585 TCGATTCTAACATCTTCTTTCAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTC
* * *
67362823 TAAAAGACCTTTTTGATTGATGTATTAGAGCAATATATAGTGGTGGAGATTTGATTTTCCAA-CA
650 TAAAAGACCTTTTTGATTGATGTATCAGAGCAATATATAGTGGTAGAAATTTGATTTT-CAAGCA
67362887 AGCTTATGGTAATAACTTTTCA-ATTTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTT
714 AGCTTATGGTAATAACTTTTCATA-TTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTT
67362951 GAGTGATTTGAGTGAAACAATA
778 GAGTGATTTGAGTGAAACAATA
* *
67362973 CTTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCAT-AAAAAAAACAATATTTACATACA
1 CTTAGTTATGTTTTGTTCTTCTAAATATTCAACTTGTTCATAAAAAAAAACAATACTTACATACA
* *
67363037 TAGTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTTCATATTTTGAGAAGAAGCTCACT
66 TAGTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACT
* * * * *
67363102 TATATTCAACTGATGGCTAGTTATTTTTCTAGCTAGGTAATTTTTTAATTCAATCTCGATTCTAA
131 TATATTCAACTAATGACTAGTTATTTTTCTAGCTAGGTAAATTTTCAATTCAATATCGATTCTAA
*
67363167 CATCTTCTTTCATCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCATCTAAAAGACCT
196 CATCTTCTTTCAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCATCTAAAAGACCT
*
67363232 TTTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATTTGATTTTCAAGCAAGCTTATGGTA
261 TTTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATCTGATTTTCAAGCAAGCTTATGGTA
*
67363297 ATAACTTTTCATATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGAG
326 ATAACTTTTCAAATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGAG
*
67363362 TGAAACAATACTTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATAC
391 TGAAACAATAATTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATAC
* * * *
67363427 TTACATACATATTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAG
456 TTACATACATATTAGTAGTAATTCGTCACTTTTGAACTTGAGTGTCAATTCCATATTCTGAGAAA
*
67363492 AAGCTCACTTGTATTCAATTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATCT
521 AAGCTCACTTGTATTCAACTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATCT
* *
67363557 CGATTCTAACATCTTCTTTTAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCTTCT
586 CGATTCTAACATCTTCTTTCAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTCT
**
67363622 AAAAGACCTTTTTGATTGATGTATCAGCTCAATATATAGTGGTAGAAATTTGATTTTCAAGCAAG
651 AAAAGACCTTTTTGATTGATGTATCAGAGCAATATATAGTGGTAGAAATTTGATTTTCAAGCAAG
67363687 CTTATGGTAATAACTTTTCATATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAG
716 CTTATGGTAATAACTTTTCATATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAG
67363752 TGATTTGAGTG
781 TGATTTGAGTG
67363763 TATCTCTAGT
Statistics
Matches: 755, Mismatches: 32, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
797 563 0.75
798 151 0.20
799 41 0.05
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (799 bp):
CTTAGTTATGTTTTGTTCTTCTAAATATTCAACTTGTTCATAAAAAAAAACAATACTTACATACA
TAGTAGTAGTAATTCGTCATTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAGAAGCTCACT
TATATTCAACTAATGACTAGTTATTTTTCTAGCTAGGTAAATTTTCAATTCAATATCGATTCTAA
CATCTTCTTTCAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCATCTAAAAGACCT
TTTTGATTGATGTATCAGCTCAATATATAGTGGTGGAGATCTGATTTTCAAGCAAGCTTATGGTA
ATAACTTTTCAAATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAGTGATTTGAG
TGAAACAATAATTAGTTATGTTTTGTTCTTCTAAATATTCGACTTGTTCATAAAAAAAACAATAC
TTACATACATATTAGTAGTAATTCGTCACTTTTGAACTTGAGTGTCAATTCCATATTCTGAGAAA
AAGCTCACTTGTATTCAACTGATGACTAGTTATTTTTCTAGCTAGGTAATTTTTCAATTCAATCT
CGATTCTAACATCTTCTTTCAGCTTGTGACCACACCCCCTAACCAAAGCCACGTTACAACCCTCT
AAAAGACCTTTTTGATTGATGTATCAGAGCAATATATAGTGGTAGAAATTTGATTTTCAAGCAAG
CTTATGGTAATAACTTTTCATATTGACTAATGAGTGCTTTAATTGATGTCCTTAAACACCTTGAG
TGATTTGAGTGAAACAATA
Found at i:67367958 original size:40 final size:40
Alignment explanation
Indices: 67367857--67368075 Score: 242
Period size: 40 Copynumber: 5.5 Consensus size: 40
67367847 CGAATGGTAT
* * * *
67367857 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAA
* * *
67367898 CC-GGTTCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* *
67367938 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * *
67367978 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
* * * * * *
67368018 CCAGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
*
67368058 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
67368076 ACAATCGAGC
Statistics
Matches: 153, Mismatches: 23, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
40 128 0.84
41 25 0.16
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAA
Found at i:67368071 original size:120 final size:121
Alignment explanation
Indices: 67367857--67368075 Score: 289
Period size: 120 Copynumber: 1.8 Consensus size: 121
67367847 CGAATGGTAT
* * * *
67367857 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGTTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGCTCAACTCCCGAAGGCAATT
* * *
67367922 GTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * *
67367978 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCAGGCT-AATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCC-GGCTCAACTCCCGAAGGCAAT
* * *
67368041 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
65 TGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
67368076 ACAATCGAGC
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
120 55 0.66
121 28 0.34
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (121 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGCTCAACTCCCGAAGGCAATT
GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:67368109 original size:80 final size:80
Alignment explanation
Indices: 67367948--67368115 Score: 187
Period size: 80 Copynumber: 2.1 Consensus size: 80
67367938 CCGGGTTAAG
* * * * * * * *
67367948 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTAC
1 TCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCAC
67368013 TAAATCCAGGCTAAT
66 TAAATCCAGGCTAAT
* * * *
67368028 TCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGC
1 TCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCAC
* *
67368093 TACATCC-GGTTAAAT
66 TAAATCCAGGCT-AAT
67368108 T-CCGAAGG
1 TCCCGAAGG
67368116 TACGTGATTC
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 10 0.14
80 63 0.86
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.22
Consensus pattern (80 bp):
TCCCGAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCGAAGACAATCGAGCGAGTCAC
TAAATCCAGGCTAAT
Found at i:67375322 original size:40 final size:40
Alignment explanation
Indices: 67375224--67375440 Score: 231
Period size: 40 Copynumber: 5.5 Consensus size: 40
67375214 CGAATGGTAT
* * * * * *
67375224 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
*
67375265 CC-GGTCAA-TCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
*
67375303 CCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
67375343 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * * * * * *
67375383 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
67375423 CCGGGCTATGTCCCGAAG
1 CCGGGTTAAGTCCCGAAG
67375441 ACAATCAGCG
Statistics
Matches: 151, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
38 10 0.07
39 22 0.15
40 117 0.77
41 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:67375440 original size:120 final size:119
Alignment explanation
Indices: 67375224--67375440 Score: 283
Period size: 120 Copynumber: 1.8 Consensus size: 119
67375214 CGAATGGTAT
* * * *
67375224 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGTCAATCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGCAATCCCGAAGGCAATTGT
* * * *
67375289 GCGAGTTACCAAAACCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACCAAAA
66 GCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* * *
67375343 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGCTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGC-AA-TCCCGAAGGCAATT
* * *
67375407 GTGCGAATCACTATAACCGGGCTATGTCCCGAAG
64 GTGCGAATCACCAAAACCGGGCTAAGTCCCGAAG
67375441 ACAATCAGCG
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
118 15 0.18
119 27 0.33
120 40 0.49
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGCAATCCCGAAGGCAATTGT
GCGAATCACCAAAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:67377382 original size:40 final size:40
Alignment explanation
Indices: 67377327--67377404 Score: 131
Period size: 40 Copynumber: 1.9 Consensus size: 40
67377317 TGCAGTACCT
*
67377327 TATGGTGTGTAGGGAT-AGATGGGTCGATTTTATCCCCATA
1 TATGGTGTGTAGGGATGAG-TGGGTCAATTTTATCCCCATA
67377367 TATGGTGTGTAGGGATGAGTGGGTCAATTTTATCCCCA
1 TATGGTGTGTAGGGATGAGTGGGTCAATTTTATCCCCA
67377405 CATGGTGTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
40 34 0.94
41 2 0.06
ACGTcount: A:0.22, C:0.13, G:0.31, T:0.35
Consensus pattern (40 bp):
TATGGTGTGTAGGGATGAGTGGGTCAATTTTATCCCCATA
Found at i:67380936 original size:20 final size:20
Alignment explanation
Indices: 67380902--67380948 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
67380892 GCATCGATGA
67380902 TGCATAATAGAGGCATCAAAG
1 TGCA-AATAGAGGCATCAAAG
*
67380923 TGCAAATAGGGGCATCAAAG
1 TGCAAATAGAGGCATCAAAG
67380943 TGCAAA
1 TGCAAA
67380949 CTCGTACAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.43, C:0.15, G:0.26, T:0.17
Consensus pattern (20 bp):
TGCAAATAGAGGCATCAAAG
Found at i:67381412 original size:14 final size:15
Alignment explanation
Indices: 67381393--67381427 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
67381383 CTATATAGTA
*
67381393 ATTAAATTCA-ATTT
1 ATTAAATTCACATAT
67381407 ATTAAATTCACATAT
1 ATTAAATTCACATAT
67381422 ATTAAA
1 ATTAAA
67381428 AAATCAATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (15 bp):
ATTAAATTCACATAT
Found at i:67384968 original size:29 final size:29
Alignment explanation
Indices: 67384933--67385023 Score: 182
Period size: 29 Copynumber: 3.1 Consensus size: 29
67384923 AAAACCAATT
67384933 CAATACCTTAATCTCATACCATACTATGC
1 CAATACCTTAATCTCATACCATACTATGC
67384962 CAATACCTTAATCTCATACCATACTATGC
1 CAATACCTTAATCTCATACCATACTATGC
67384991 CAATACCTTAATCTCATACCATACTATGC
1 CAATACCTTAATCTCATACCATACTATGC
67385020 CAAT
1 CAAT
67385024 TCATAATCCA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 62 1.00
ACGTcount: A:0.35, C:0.31, G:0.03, T:0.31
Consensus pattern (29 bp):
CAATACCTTAATCTCATACCATACTATGC
Found at i:67385719 original size:47 final size:47
Alignment explanation
Indices: 67385664--67385791 Score: 188
Period size: 47 Copynumber: 2.7 Consensus size: 47
67385654 CTCAATCGAT
* *
67385664 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACT-TATCCTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGATAACTCT-TACTG
*
67385711 GAGTACCTATACCATGGCCCGTAGCCAAATCAA-ATAACTCCTTACTG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGATAACT-CTTACTG
*
67385758 AAATACCTATACCATGGCCCGTAGCCAAATCAAG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAG
67385792 CTATCACTCG
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
46 5 0.07
47 67 0.92
48 1 0.01
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.22
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGATAACTCTTACTG
Found at i:67387602 original size:28 final size:28
Alignment explanation
Indices: 67387560--67387615 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
67387550 TTTCCCATGT
* *
67387560 TTGATTGAAGCCAAAAATAAATAAAAAC
1 TTGATTGAAGCCAAAAAAAAAAAAAAAC
*
67387588 TTGATTGTAAGCAAAAAAAAAAAAAAAA
1 TTGATTG-AAGCCAAAAAAAAAAAAAAA
67387616 AAGATCGACT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.62, C:0.07, G:0.11, T:0.20
Consensus pattern (28 bp):
TTGATTGAAGCCAAAAAAAAAAAAAAAC
Found at i:67389117 original size:20 final size:19
Alignment explanation
Indices: 67389080--67389156 Score: 57
Period size: 20 Copynumber: 3.9 Consensus size: 19
67389070 AACTTTTTGA
*
67389080 ATTTTTAACATAAATTTTAAT
1 ATTTTTAA-AT-ATTTTTAAT
67389101 ATTTTTTAAATATTTTTAAT
1 A-TTTTTAAATATTTTTAAT
* ** * *
67389121 AATTTATATTTACTTTTAAG
1 -ATTTTTAAATATTTTTAAT
67389141 ATTTTTAAAT-TTTTTA
1 ATTTTTAAATATTTTTA
67389157 GAATTATTAT
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
18 5 0.11
19 7 0.16
20 21 0.48
21 4 0.09
22 7 0.16
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (19 bp):
ATTTTTAAATATTTTTAAT
Found at i:67392441 original size:17 final size:17
Alignment explanation
Indices: 67392419--67392458 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
67392409 TTTTAAAATT
67392419 TATTTTCAAT-TTTTTAA
1 TATTTT-AATATTTTTAA
*
67392436 TATTTTAATATTTTTAG
1 TATTTTAATATTTTTAA
67392453 TATTTT
1 TATTTT
67392459 GATGTATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 3 0.14
17 18 0.86
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (17 bp):
TATTTTAATATTTTTAA
Found at i:67392809 original size:22 final size:21
Alignment explanation
Indices: 67392783--67392825 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
67392773 TATCTTTTTT
67392783 ATATTAAAATT-TAATAATAATA
1 ATATT-AAATTATAAT-ATAATA
67392805 ATATTAAATTATAATATAATA
1 ATATTAAATTATAATATAATA
67392826 GTTTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
ATATTAAATTATAATATAATA
Found at i:67393214 original size:21 final size:20
Alignment explanation
Indices: 67393181--67393223 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
67393171 TTAATATGGT
67393181 ATTTGTACTTTGAAATATTCA
1 ATTTGTACTTTGAAATA-TCA
*
67393202 ATTTGATAC-TTGAACTATCA
1 ATTTG-TACTTTGAAATATCA
67393222 AT
1 AT
67393224 ATGTGCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 12 0.60
22 3 0.15
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (20 bp):
ATTTGTACTTTGAAATATCA
Found at i:67393433 original size:20 final size:20
Alignment explanation
Indices: 67393408--67393458 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
67393398 TAATATTGCG
67393408 AGAAATCTAAA-TAAAATAAA
1 AGAAAT-TAAATTAAAATAAA
*
67393428 AGAAATTAAATTAAATTAAAA
1 AGAAATTAAATTAAAAT-AAA
*
67393449 AGTAATTAAA
1 AGAAATTAAA
67393459 CATATGGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 4 0.15
20 11 0.41
21 12 0.44
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (20 bp):
AGAAATTAAATTAAAATAAA
Found at i:67393903 original size:29 final size:29
Alignment explanation
Indices: 67393868--67393924 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
67393858 CCGCATTAAA
* *
67393868 CATTTTCAAGGTACAAGTATCACATTGGG
1 CATTTTCAAAGTACAAGTACCACATTGGG
* *
67393897 CATTTTCAAAGTATAAGTACCATATTGG
1 CATTTTCAAAGTACAAGTACCACATTGG
67393925 AAATATTATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (29 bp):
CATTTTCAAAGTACAAGTACCACATTGGG
Found at i:67396811 original size:40 final size:42
Alignment explanation
Indices: 67396766--67396868 Score: 147
Period size: 40 Copynumber: 2.5 Consensus size: 42
67396756 ACTTGATATA
67396766 TGATTCGCATGTTAAGCATGCTCACTGTACTGA-T-TAAATC
1 TGATTCGCATGTTAAGCATGCTCACTGTACTGATTATAAATC
* * * * *
67396806 TGATTCGGATGTTAAGCATACTGACTGTATTGATTATAAATT
1 TGATTCGCATGTTAAGCATGCTCACTGTACTGATTATAAATC
67396848 TGATTCGCATGTTAAGCATGC
1 TGATTCGCATGTTAAGCATGC
67396869 CAACTGAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 29 0.54
41 1 0.02
42 24 0.44
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (42 bp):
TGATTCGCATGTTAAGCATGCTCACTGTACTGATTATAAATC
Found at i:67397779 original size:14 final size:14
Alignment explanation
Indices: 67397760--67397800 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
67397750 CTACGACATT
67397760 TTCAAAGTAAAATG
1 TTCAAAGTAAAATG
67397774 TTCAAAGT--AA-G
1 TTCAAAGTAAAATG
67397785 TTCAAAGTAAAATG
1 TTCAAAGTAAAATG
67397799 TT
1 TT
67397801 TTCTTCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
11 9 0.38
12 2 0.08
13 2 0.08
14 11 0.46
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.32
Consensus pattern (14 bp):
TTCAAAGTAAAATG
Found at i:67398241 original size:15 final size:15
Alignment explanation
Indices: 67398223--67398268 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
67398213 ACTGAAAATT
67398223 TAGATTGTGAAACTA
1 TAGATTGTGAAACTA
* *
67398238 TAGACTATGAAACTA
1 TAGATTGTGAAACTA
*
67398253 TAGATAGTGAAACTA
1 TAGATTGTGAAACTA
67398268 T
1 T
67398269 GACTAAACTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.30
Consensus pattern (15 bp):
TAGATTGTGAAACTA
Found at i:67398249 original size:30 final size:29
Alignment explanation
Indices: 67398215--67398273 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
67398205 TCTTATATAC
* *
67398215 TGAAAATTTAGATTGTGAAACTATAGACTA
1 TGAAAATATAGATAGTGAAACTAT-GACTA
*
67398245 TGAAACTATAGATAGTGAAACTATGACTA
1 TGAAAATATAGATAGTGAAACTATGACTA
67398274 AACTATTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 5 0.19
30 21 0.81
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (29 bp):
TGAAAATATAGATAGTGAAACTATGACTA
Found at i:67405393 original size:52 final size:51
Alignment explanation
Indices: 67405335--67405484 Score: 167
Period size: 52 Copynumber: 2.9 Consensus size: 51
67405325 GACGGAAAAG
*
67405335 ATGTGATATGTGCTTCCATATAAGACCATAGCTGGGCTATGGCATAGATACA
1 ATGTGATATGTG-TTCCGTATAAGACCATAGCTGGGCTATGGCATAGATACA
* * * **
67405387 ATGTGAT-TCGTGTTCCCGTATAAGACCATAGCTGGGCTATGGTATCGGTGTA
1 ATGTGATAT-GTGTT-CCGTATAAGACCATAGCTGGGCTATGGCATAGATACA
** *
67405439 ATGTGATAATGTGATTCCGTATAAGACCATATATGGGATATGGCAT
1 ATGTGAT-ATGTG-TTCCGTATAAGACCATAGCTGGGCTATGGCAT
67405485 CGGTATGTTA
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
51 3 0.04
52 48 0.58
53 29 0.35
54 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (51 bp):
ATGTGATATGTGTTCCGTATAAGACCATAGCTGGGCTATGGCATAGATACA
Found at i:67405504 original size:46 final size:52
Alignment explanation
Indices: 67405342--67405514 Score: 130
Period size: 52 Copynumber: 3.4 Consensus size: 52
67405332 AAGATGTGAT
* * * * * * **
67405342 ATGTGCTTCCATATAAGACCATAGCTGGGCTATGGCATAGATACAATGTGAT-
1 ATGTGATTCCGTATAAGACCATAGATGGGATATGGCATCGGTGTAATGT-ATA
* * *
67405394 -TCGTG-TTCCCGTATAAGACCATAGCTGGGCTATGGTATCGGTGTAATGTGATA
1 AT-GTGATT-CCGTATAAGACCATAGATGGGATATGGCATCGGTGTAATGT-ATA
*
67405447 ATGTGATTCCGTATAAGACCATATATGGGATATGGCATC-G-GT-ATGT-T-
1 ATGTGATTCCGTATAAGACCATAGATGGGATATGGCATCGGTGTAATGTATA
*
67405494 ATGTGA-TCCGTGTAAGACCAT
1 ATGTGATTCCGTATAAGACCAT
67405515 GGCAGGGCTA
Statistics
Matches: 105, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
46 14 0.13
47 6 0.06
48 1 0.01
50 4 0.04
51 5 0.05
52 42 0.40
53 30 0.29
54 3 0.03
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.31
Consensus pattern (52 bp):
ATGTGATTCCGTATAAGACCATAGATGGGATATGGCATCGGTGTAATGTATA
Found at i:67407174 original size:33 final size:33
Alignment explanation
Indices: 67407136--67407265 Score: 152
Period size: 33 Copynumber: 3.9 Consensus size: 33
67407126 GGATGAGTGG
* *
67407136 GAGTGTTTGGTTGCTAGAGAGGAGCTGGAATGT
1 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
* *
67407169 GAGTGTTTGGTTGTTGGACAGAAGCTGGAATGT
1 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
* *
67407202 GAGTGTTTGGTTGCTGGATAGGAGATGGAATGT
1 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
* * * * * *
67407235 AAGTGCTTAGTTGTTGGACAAGAGCTAGAAT
1 GAGTGTTTGGTTGCTGGACAGGAGCTGGAAT
67407266 TTCAAGAAGA
Statistics
Matches: 81, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 81 1.00
ACGTcount: A:0.24, C:0.06, G:0.38, T:0.32
Consensus pattern (33 bp):
GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
Found at i:67420356 original size:3 final size:3
Alignment explanation
Indices: 67420348--67420397 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
67420338 TATTGTTTAC
67420348 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
67420396 TA
1 TA
67420398 CCGAGTCTCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:67425174 original size:32 final size:32
Alignment explanation
Indices: 67425138--67425204 Score: 75
Period size: 31 Copynumber: 2.1 Consensus size: 32
67425128 TGAATTAACT
* *
67425138 TTAAAATT-TTTTAAAACTTTTCATTTAAATTA
1 TTAAAATTATTCT-AAACTTTTCACTTAAATTA
* *
67425170 TT-AAATTATTCTAAAGTTTTTACTTAAATTA
1 TTAAAATTATTCTAAACTTTTCACTTAAATTA
67425201 TTAA
1 TTAA
67425205 GTTGTGAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
31 23 0.79
32 6 0.21
ACGTcount: A:0.40, C:0.06, G:0.01, T:0.52
Consensus pattern (32 bp):
TTAAAATTATTCTAAACTTTTCACTTAAATTA
Found at i:67425825 original size:22 final size:25
Alignment explanation
Indices: 67425799--67425844 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
67425789 TAAATTGATA
67425799 ATTTCT-C-TTAAAAATT-TCATCG
1 ATTTCTACGTTAAAAATTGTCATCG
67425821 ATTTCTACTGTTAAAAATTGTCAT
1 ATTTCTAC-GTTAAAAATTGTCAT
67425845 GGCTAATAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.30
23 1 0.05
25 9 0.45
26 4 0.20
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.46
Consensus pattern (25 bp):
ATTTCTACGTTAAAAATTGTCATCG
Found at i:67425959 original size:24 final size:25
Alignment explanation
Indices: 67425913--67425959 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
67425903 TACAGGGACC
67425913 AATTTTAACAGTAAAAATAAATTAA
1 AATTTTAACAGTAAAAATAAATTAA
* *
67425938 AATTTTAATAG-AAAAATTAATT
1 AATTTTAACAGTAAAAATAAATT
67425960 TATTCTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.36
Consensus pattern (25 bp):
AATTTTAACAGTAAAAATAAATTAA
Found at i:67433417 original size:433 final size:433
Alignment explanation
Indices: 67432611--67433478 Score: 1691
Period size: 433 Copynumber: 2.0 Consensus size: 433
67432601 TTTAAAGATG
67432611 TTTTAAACTTGCCAAATATGCAACAATTGCATATGTTATTTAATTAATTAAATAAATGATAGTGA
1 TTTTAAACTTGCCAAATATGCAACAATTGCATATGTTATTTAATTAATTAAATAAATGATAGTGA
67432676 GTTCTTTACCTTTTCTTTCTTGGTTGTTTTGTTGCATCTTTATGCTGGTATGAGTGATGGAATTA
66 GTTCTTTACCTTTTCTTTCTTGGTTGTTTTGTTGCATCTTTATGCTGGTATGAGTGATGGAATTA
67432741 AGTGAAATTTTAGTGAAATTTTTAGCTGTCGAGGGAGCTGCTGAAGCATGCAGTTTGCATGCATG
131 AGTGAAATTTTAGTGAAATTTTTAGCTGTCGAGGGAGCTGCTGAAGCATGCAGTTTGCATGCATG
67432806 CTGTTTAATTTCTTACCAATTTAGGTAGTCTGATCAATGGTTGTTTATTGTTGTCCAAATAATAA
196 CTGTTTAATTTCTTACCAATTTAGGTAGTCTGATCAATGGTTGTTTATTGTTGTCCAAATAATAA
*
67432871 TTAAAGATCATCCAAGTGATCAGGAAATTAAAATGATCTGAACAATGTGAAACTAAATTGTTAAA
261 TTAAAGATCATCCAAGTGATCAAGAAATTAAAATGATCTGAACAATGTGAAACTAAATTGTTAAA
*
67432936 TGTTAACTAATGATGTCCAAATGGATATGAATTTATGATGTTAGTAAGCTAAAAATTTAGGTGTT
326 TGTTAACTAATGATGTCCAAATGGATATGAATTTATGATGCTAGTAAGCTAAAAATTTAGGTGTT
67433001 AAATGCTGCAATTTATGGTGTCGAAAAGTTGTGATTTATGATA
391 AAATGCTGCAATTTATGGTGTCGAAAAGTTGTGATTTATGATA
67433044 TTTTAAACTTGCCAAATATGCAACAATTGCATATGTTATTTAATTAATTAAATAAATGATAGTGA
1 TTTTAAACTTGCCAAATATGCAACAATTGCATATGTTATTTAATTAATTAAATAAATGATAGTGA
67433109 GTTCTTTACCTTTTCTTTCTTGGTTGTTTTGTTGCATCTTTATGCTGGTATGAGTGATGGAATTA
66 GTTCTTTACCTTTTCTTTCTTGGTTGTTTTGTTGCATCTTTATGCTGGTATGAGTGATGGAATTA
67433174 AGTGAAATTTTAGTGAAATTTTTAGCTGTCGAGGGAGCTGCTGAAGCATGCAGTTTGCATGCATG
131 AGTGAAATTTTAGTGAAATTTTTAGCTGTCGAGGGAGCTGCTGAAGCATGCAGTTTGCATGCATG
* *
67433239 CTGTTTAATTTCTTACCAGTTTAGGTAGTCTGATCGATGGTTGTTTATTGTTGTCCAAATAATAA
196 CTGTTTAATTTCTTACCAATTTAGGTAGTCTGATCAATGGTTGTTTATTGTTGTCCAAATAATAA
67433304 TTAAAGATCATCCAAGTGATCAAGAAATTAAAATGATCTGAACAATGTGAAACTAAATTGTTAAA
261 TTAAAGATCATCCAAGTGATCAAGAAATTAAAATGATCTGAACAATGTGAAACTAAATTGTTAAA
67433369 TGTTAACTAATGATGTCCAAATGGATATGAATTTATGATGCTAGTAAGCTAAAAATTTAGGTGTT
326 TGTTAACTAATGATGTCCAAATGGATATGAATTTATGATGCTAGTAAGCTAAAAATTTAGGTGTT
*
67433434 AAATGCTGCAATTTATGGTGTCGGAAAGTTGTGATTTATGATA
391 AAATGCTGCAATTTATGGTGTCGAAAAGTTGTGATTTATGATA
67433477 TT
1 TT
67433479 CGAATGATGT
Statistics
Matches: 430, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
433 430 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (433 bp):
TTTTAAACTTGCCAAATATGCAACAATTGCATATGTTATTTAATTAATTAAATAAATGATAGTGA
GTTCTTTACCTTTTCTTTCTTGGTTGTTTTGTTGCATCTTTATGCTGGTATGAGTGATGGAATTA
AGTGAAATTTTAGTGAAATTTTTAGCTGTCGAGGGAGCTGCTGAAGCATGCAGTTTGCATGCATG
CTGTTTAATTTCTTACCAATTTAGGTAGTCTGATCAATGGTTGTTTATTGTTGTCCAAATAATAA
TTAAAGATCATCCAAGTGATCAAGAAATTAAAATGATCTGAACAATGTGAAACTAAATTGTTAAA
TGTTAACTAATGATGTCCAAATGGATATGAATTTATGATGCTAGTAAGCTAAAAATTTAGGTGTT
AAATGCTGCAATTTATGGTGTCGAAAAGTTGTGATTTATGATA
Found at i:67433745 original size:2 final size:2
Alignment explanation
Indices: 67433738--67433770 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
67433728 TCCTTAAGTT
67433738 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
67433771 TCATGTATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:67435691 original size:40 final size:40
Alignment explanation
Indices: 67435632--67436027 Score: 641
Period size: 40 Copynumber: 9.9 Consensus size: 40
67435622 CTCGCCGATG
*
67435632 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
67435672 ATCCGGGCTAAGTCTCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
67435712 ATTCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
67435752 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
67435792 ATCCGGGCTAAGTCCCGAAGAGCATAT-GTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCAT-TCGTGCTGGTGTTAT
67435832 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
67435872 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * *
67435912 ATCCGGGCTAAGTCTCGAATAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
** *
67435952 ATCAAGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * *
67435992 ATCCGGGCTAGGTCCCGAAGAGCATTCATGTTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
67436028 ATGTGTATTC
Statistics
Matches: 330, Mismatches: 24, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.00
40 328 0.99
41 1 0.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:67436241 original size:25 final size:25
Alignment explanation
Indices: 67436191--67436241 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
67436181 TGTGTAACAA
* *
67436191 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
67436216 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
67436241 C
1 C
67436242 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:67438423 original size:26 final size:26
Alignment explanation
Indices: 67438394--67438494 Score: 175
Period size: 26 Copynumber: 3.9 Consensus size: 26
67438384 TTGATCAAAA
*
67438394 GTTAGGTAAATGTTCCATGATAATAG
1 GTTAGGTAAATGTTCCATGATAATGG
67438420 GTTAGGTAAATGTTCCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
*
67438446 GTTAGGTAAATGTTTCATGATAATGG
1 GTTAGGTAAATGTTCCATGATAATGG
*
67438472 GTTAGGTAAATGTTTCATGATAA
1 GTTAGGTAAATGTTCCATGATAA
67438495 GAAATTCATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
GTTAGGTAAATGTTCCATGATAATGG
Found at i:67444228 original size:26 final size:26
Alignment explanation
Indices: 67444191--67444299 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
67444181 TGATACAAAT
67444191 TGATAA-AGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
67444216 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
67444242 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
67444268 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
67444294 TGATAA
1 TGATAA
67444300 GAATTTCATG
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 6 0.07
26 75 0.93
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:67450330 original size:26 final size:26
Alignment explanation
Indices: 67450284--67450335 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
67450274 ATACTACAAT
* *
67450284 TATGGAAGCTAGACTGTAAATCTATG
1 TATGGAAGCTAGACTGCAAATATATG
*
67450310 TATGGCAGCTTAG-CTGCAAATATATG
1 TATGGAAGC-TAGACTGCAAATATATG
67450336 AGTGGCACAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (26 bp):
TATGGAAGCTAGACTGCAAATATATG
Found at i:67450473 original size:30 final size:30
Alignment explanation
Indices: 67450439--67450504 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
67450429 ATGGGGGTAG
67450439 GATATGATATGTTATACTATGATTTGATCC
1 GATATGATATGTTATACTATGATTTGATCC
* * *
67450469 GATATGATATGTTATGCTATGGTTTGATCT
1 GATATGATATGTTATACTATGATTTGATCC
67450499 GATATG
1 GATATG
67450505 CTATACAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (30 bp):
GATATGATATGTTATACTATGATTTGATCC
Found at i:67453214 original size:16 final size:16
Alignment explanation
Indices: 67453195--67453225 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67453185 TTCTATTGAA
*
67453195 ATCACTTAACAAAATC
1 ATCACATAACAAAATC
67453211 ATCACATAACAAAAT
1 ATCACATAACAAAAT
67453226 TAGAACTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (16 bp):
ATCACATAACAAAATC
Found at i:67454056 original size:44 final size:44
Alignment explanation
Indices: 67453995--67454084 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
67453985 GTTGAAATGG
* * * *
67453995 AATAGAAGTTGTGATAATTATACATTTAAAAATAATTATAATTT
1 AATAAAAGTTGTAATAATTACACATTTAAAAATAATTAGAATTT
*
67454039 AATAAAAGTTGTAATAATTACACATTTACAAATAATTAGAATTT
1 AATAAAAGTTGTAATAATTACACATTTAAAAATAATTAGAATTT
67454083 AA
1 AA
67454085 ATTACAATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (44 bp):
AATAAAAGTTGTAATAATTACACATTTAAAAATAATTAGAATTT
Found at i:67460373 original size:23 final size:24
Alignment explanation
Indices: 67460328--67460373 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
67460318 TTATTTAATT
*
67460328 TAATTTAATAAATTTTAACAATAA
1 TAATTTAATAAATTTAAACAATAA
* *
67460352 TAATTTTA-AAATTTAAATAATA
1 TAATTTAATAAATTTAAACAATA
67460374 TTCTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
TAATTTAATAAATTTAAACAATAA
Found at i:67462302 original size:43 final size:43
Alignment explanation
Indices: 67462222--67462375 Score: 177
Period size: 43 Copynumber: 3.6 Consensus size: 43
67462212 TGATTATATT
* ** *
67462222 TAAGACCATGTCTAGGACATTGGCATTGTATTGTGATTACGTG
1 TAAGACCATGTCTGGGACATTGGCATCATATTATGATTACGTG
* *
67462265 TAAGACCATGTCTGGGACATTAGCATCATATTATGATTTCGTG
1 TAAGACCATGTCTGGGACATTGGCATCATATTATGATTACGTG
* * * *
67462308 TAAGACCCTGTCTGGGACAGTGGCATCGATA-TATGATAACATG
1 TAAGACCATGTCTGGGACATTGGCATC-ATATTATGATTACGTG
* *
67462351 TAAGACCATATCTGGGATA-TGGCAT
1 TAAGACCATGTCTGGGACATTGGCAT
67462376 TGTGCGAGCT
Statistics
Matches: 95, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
42 6 0.06
43 86 0.91
44 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATCATATTATGATTACGTG
Found at i:67464564 original size:16 final size:16
Alignment explanation
Indices: 67464545--67464575 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67464535 CTTCTTCACT
67464545 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
67464561 TACTTACTTACTTAA
1 TACTCACTTACTTAA
67464576 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:67464581 original size:20 final size:20
Alignment explanation
Indices: 67464542--67464581 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
67464532 AAACTTCTTC
* *
67464542 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
67464562 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
67464582 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:67464692 original size:23 final size:24
Alignment explanation
Indices: 67464654--67464698 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
67464644 TTTGCTCTTC
*
67464654 TAGTATGAACTTGTCTTACCTTTT
1 TAGTATGAACTCGTCTTACCTTTT
67464678 TAGTAT-AACTCGTCTTACCTT
1 TAGTATGAACTCGTCTTACCTT
67464699 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.20, G:0.11, T:0.47
Consensus pattern (24 bp):
TAGTATGAACTCGTCTTACCTTTT
Found at i:67464957 original size:55 final size:53
Alignment explanation
Indices: 67464826--67465021 Score: 189
Period size: 55 Copynumber: 3.6 Consensus size: 53
67464816 CTTACCATTG
* * *
67464826 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCGCCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATA
* * * *
67464879 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATA
1 CCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAATA
*** * *
67464934 CCATGTCTTGACATGGTCTTACATGATCTCCTTGCCTTA-GAAACCTTACCAATTT
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA-TA
* * *
67464989 CCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 CCATGTCTTGACATGGTCTTACATGGGATCCTT
67465022 AAACCCTAAT
Statistics
Matches: 118, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 37 0.31
54 8 0.07
55 69 0.58
56 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.17, T:0.35
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAATA
Found at i:67469270 original size:28 final size:27
Alignment explanation
Indices: 67469207--67469276 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
67469197 ATAGTGAGTC
*
67469207 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
67469234 CGCACACTTAGTGCTACATGATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
67469262 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
67469277 GTACAAGTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:67472828 original size:17 final size:17
Alignment explanation
Indices: 67472802--67472859 Score: 73
Period size: 17 Copynumber: 3.4 Consensus size: 17
67472792 ACTTTTCCTT
* *
67472802 CTATTGTATTGTATGAA
1 CTATTATATTGAATGAA
67472819 CTATTATATTGAATGAA
1 CTATTATATTGAATGAA
*
67472836 CTATTAT-TATGCATGAA
1 CTATTATAT-TGAATGAA
67472853 CTATTAT
1 CTATTAT
67472860 TTTTTGCGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
16 1 0.03
17 36 0.97
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (17 bp):
CTATTATATTGAATGAA
Found at i:67472860 original size:17 final size:18
Alignment explanation
Indices: 67472808--67472860 Score: 74
Period size: 17 Copynumber: 3.1 Consensus size: 18
67472798 CCTTCTATTG
*
67472808 TATTGTATGAACTATTA-
1 TATTGAATGAACTATTAT
67472825 TATTGAATGAACTATTAT
1 TATTGAATGAACTATTAT
*
67472843 TA-TGCATGAACTATTAT
1 TATTGAATGAACTATTAT
67472860 T
1 T
67472861 TTTTGCGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
17 31 0.94
18 2 0.06
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.45
Consensus pattern (18 bp):
TATTGAATGAACTATTAT
Found at i:67479774 original size:50 final size:49
Alignment explanation
Indices: 67479664--67479934 Score: 229
Period size: 50 Copynumber: 5.7 Consensus size: 49
67479654 ATGGTAAGAT
* * * * *
67479664 GCCGACGCCATATCTCAGACATGGTCTTACACTG--GCTCATACATCTAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATC-AA
**
67479712 GTTGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAA
* * * * * *
67479761 GACTGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATCTGTCAGT
1 G-CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCA-A
* * * *
67479812 GCCGATGTCATGTCCCAAACATGGTCTTACACT-A---ACACATATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAA
* * * ***
67479857 GCCGATGCCTTGTCCTAGACATGGTCTTACACT-AGCTCTTATA-ATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCAA
67479905 GCCGATG-CATGTCCCAGACAT-GTCTTACAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC
67479935 CAGCACACAT
Statistics
Matches: 180, Mismatches: 35, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
45 30 0.17
46 15 0.08
47 12 0.07
48 38 0.21
49 5 0.03
50 79 0.44
51 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCAA
Found at i:67487454 original size:50 final size:49
Alignment explanation
Indices: 67487351--67487572 Score: 152
Period size: 50 Copynumber: 4.6 Consensus size: 49
67487341 GGTAAGATGC
* * * *
67487351 CGATGCCATATCCCAGACATGGTCTTACACTG-GCTCATACATCGAAGT
1 CGATGTCATGTCCCAGACATGGTCTTACACTGCTCTCATACATCGAAGA
* * * *
67487399 CGATGTTATGTCCTAGACATGGTCTTACAATGACTCTCATATATCG-AGA
1 CGATGTCATGTCCCAGACATGGTCTTACACTG-CTCTCATACATCGAAGA
* * * * ** *
67487448 CAGATGTCATGTCCCAAACATGGTCTTGCACTGGCTCTCAT-CTGTTGGTGC
1 C-GATGTCATGTCCCAGACATGGTCTTACACT-GCTCTCATAC-ATCGAAGA
* * * * * * *
67487499 CAATGCCATGTCCTATACATGGTCTTACACTG-ACACAT--ATC-AAGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGCTCTCATACATCGAAGA
*
67487544 CGATGCCATGTCCCAGACATGGTCTTACA
1 CGATGTCATGTCCCAGACATGGTCTTACA
67487573 TTAGCTTTCA
Statistics
Matches: 136, Mismatches: 32, Indels: 15
0.74 0.17 0.08
Matches are distributed among these distances:
45 28 0.21
46 1 0.01
48 31 0.23
49 4 0.03
50 69 0.51
51 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (49 bp):
CGATGTCATGTCCCAGACATGGTCTTACACTGCTCTCATACATCGAAGA
Found at i:67489025 original size:26 final size:26
Alignment explanation
Indices: 67488993--67489044 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
67488983 TCATAATACT
67488993 TAATACTTTAACTAAAATGAATTTAA
1 TAATACTTTAACTAAAATGAATTTAA
67489019 TAATACTTTAACTAAAATGAATTTAA
1 TAATACTTTAACTAAAATGAATTTAA
67489045 CCCACAATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (26 bp):
TAATACTTTAACTAAAATGAATTTAA
Found at i:67489045 original size:15 final size:15
Alignment explanation
Indices: 67488999--67489045 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
67488989 TACTTAATAC
67488999 TTTAACTAAAATGAA
1 TTTAACTAAAATGAA
*
67489014 TTTAA-T--AAT-AC
1 TTTAACTAAAATGAA
67489025 TTTAACTAAAATGAA
1 TTTAACTAAAATGAA
67489040 TTTAAC
1 TTTAAC
67489046 CCACAATCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
11 6 0.23
12 4 0.15
14 4 0.15
15 12 0.46
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.38
Consensus pattern (15 bp):
TTTAACTAAAATGAA
Found at i:67490105 original size:2 final size:2
Alignment explanation
Indices: 67490098--67490150 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
67490088 TCATAACAGC
*
67490098 AT AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67490140 AT AT AT AT AT A
1 AT AT AT AT AT A
67490151 GCATTTAACT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:67497330 original size:33 final size:33
Alignment explanation
Indices: 67497276--67497346 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
67497266 CTGATTGCAT
*
67497276 ACTGTACTGATTCTGTAATGGGCTTAGGCCC-C
1 ACTGTACTGATTCTGTAATGGGCTCAGGCCCAC
67497308 ACTGATACT-ATTACTGTAATGGGCTCAGGCCCAC
1 ACTG-TACTGATT-CTGTAATGGGCTCAGGCCCAC
67497342 ACTGT
1 ACTGT
67497347 TTCTAATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
32 7 0.20
33 23 0.66
34 5 0.14
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (33 bp):
ACTGTACTGATTCTGTAATGGGCTCAGGCCCAC
Found at i:67503739 original size:46 final size:46
Alignment explanation
Indices: 67503686--67503861 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
67503676 TATTTGGGCA
*
67503686 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
67503732 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
67503779 TCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67503825 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67503862 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67509249 original size:46 final size:45
Alignment explanation
Indices: 67509196--67509371 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
67509186 TATTTGGGCA
67509196 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
67509242 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
67509289 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
67509335 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67509372 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:67509351 original size:93 final size:93
Alignment explanation
Indices: 67509192--67509363 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
67509182 AGGATATTTG
* *
67509192 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67509257 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
67509285 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67509350 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
67509364 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:67515293 original size:43 final size:41
Alignment explanation
Indices: 67515175--67515296 Score: 133
Period size: 38 Copynumber: 3.0 Consensus size: 41
67515165 TATAGCTCGT
* *
67515175 ACAATGCCATATTCCAGATATGGTCTTACATGTTATCACATA
1 ACAATGCCA-ATTCCAGACATGGTCTTACATGTAATCACATA
* * * * *
67515217 TCGATGCCAA-T--AGACATAGTCTTACATGAAATCATATA
1 ACAATGCCAATTCCAGACATGGTCTTACATGTAATCACATA
67515255 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ACAATGCCAAT-T-CCAGACATGGTCTTACATGTAATCACAT
67515297 CTCGGTAATC
Statistics
Matches: 63, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
38 30 0.48
40 2 0.03
41 1 0.02
42 7 0.11
43 23 0.37
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (41 bp):
ACAATGCCAATTCCAGACATGGTCTTACATGTAATCACATA
Found at i:67515950 original size:19 final size:19
Alignment explanation
Indices: 67515928--67515967 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
67515918 TCAAGCATTC
67515928 ATCAATGAC-ACTTCACAAA
1 ATCAATGACAACTTCA-AAA
*
67515947 ATCATTGACAACTTCAAAA
1 ATCAATGACAACTTCAAAA
67515966 AT
1 AT
67515968 TAAGGCATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.47, C:0.23, G:0.05, T:0.25
Consensus pattern (19 bp):
ATCAATGACAACTTCAAAA
Found at i:67523226 original size:14 final size:14
Alignment explanation
Indices: 67523207--67523246 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
67523197 TTCAATTCTA
67523207 ATAAGAAAAAATTT
1 ATAAGAAAAAATTT
67523221 ATAAG-AAAAATTT
1 ATAAGAAAAAATTT
*
67523234 AAAAGATAAAAAT
1 ATAAGA-AAAAAT
67523247 AAAATTAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 12 0.52
14 5 0.22
15 6 0.26
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (14 bp):
ATAAGAAAAAATTT
Found at i:67526503 original size:31 final size:31
Alignment explanation
Indices: 67526467--67526529 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
67526457 GTGTTAAAAT
*
67526467 ATAAAAATATAGTTTATTTTGTTATAAAGTA
1 ATAAAAATATAGTTTAATTTGTTATAAAGTA
67526498 ATAAAAATATAGTTTAATTTGTTATAAAGTA
1 ATAAAAATATAGTTTAATTTGTTATAAAGTA
67526529 A
1 A
67526530 AGAGAGATGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (31 bp):
ATAAAAATATAGTTTAATTTGTTATAAAGTA
Found at i:67533072 original size:27 final size:27
Alignment explanation
Indices: 67533011--67533074 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
67533001 ATAATAAAGA
* * *
67533011 GCAAAGCTACTAATAGTGATAAACGTG
1 GCAAAGCCACTAATAGTCAGAAACGTG
**
67533038 GCGTAGCCACTAATA-TCAGAATACGTG
1 GCAAAGCCACTAATAGTCAGAA-ACGTG
67533065 GCAAAGCCAC
1 GCAAAGCCAC
67533075 CAGAACAGTA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
26 4 0.14
27 25 0.86
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.19
Consensus pattern (27 bp):
GCAAAGCCACTAATAGTCAGAAACGTG
Found at i:67534747 original size:52 final size:52
Alignment explanation
Indices: 67534669--67534775 Score: 205
Period size: 52 Copynumber: 2.1 Consensus size: 52
67534659 TCCCACGTGG
*
67534669 CTTCCTCTGAACCGTGATTACGCCAAAGCACTTTGACCAGTGGAACATATTT
1 CTTCCTCTGAACCGTGATTACGCCAAAGCACTTTGACCAGTGGAACAGATTT
67534721 CTTCCTCTGAACCGTGATTACGCCAAAGCACTTTGACCAGTGGAACAGATTT
1 CTTCCTCTGAACCGTGATTACGCCAAAGCACTTTGACCAGTGGAACAGATTT
67534773 CTT
1 CTT
67534776 TCTTAATACC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (52 bp):
CTTCCTCTGAACCGTGATTACGCCAAAGCACTTTGACCAGTGGAACAGATTT
Found at i:67545952 original size:23 final size:23
Alignment explanation
Indices: 67545857--67545957 Score: 55
Period size: 23 Copynumber: 4.4 Consensus size: 23
67545847 TCAGCTCGTA
* * *
67545857 AGAGCTTACTGTTTTCAGCTTATT
1 AGAGCTTACCG-TATCAGCTTAAT
* * * *
67545881 GGAGCTTACCATTTCAGCTT-GT
1 AGAGCTTACCGTATCAGCTTAAT
** *
67545903 ATGAGCTTACTTTA-CAGCTCGAA-
1 A-GAGCTTACCGTATCAGCT-TAAT
67545926 AGAGCTTACCGTATCAGCTTAAT
1 AGAGCTTACCGTATCAGCTTAAT
*
67545949 AGAGTTTAC
1 AGAGCTTAC
67545958 TGTTCATCAG
Statistics
Matches: 58, Mismatches: 14, Indels: 11
0.70 0.17 0.13
Matches are distributed among these distances:
22 18 0.31
23 32 0.55
24 8 0.14
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (23 bp):
AGAGCTTACCGTATCAGCTTAAT
Found at i:67545958 original size:45 final size:49
Alignment explanation
Indices: 67545882--67545985 Score: 110
Period size: 45 Copynumber: 2.2 Consensus size: 49
67545872 CAGCTTATTG
* * *
67545882 GAGCTTACCATTTCAGCTTGTATGAGCTTACT-TT-A-CAGCTC-GAAA
1 GAGCTTACCGTATCAGCTTATATGAGCTTACTGTTCATCAGCTCAGAAA
* * *
67545927 GAGCTTACCGTATCAGCTTA-ATAGAGTTTACTGTTCATCAGCTCAGGAG
1 GAGCTTACCGTATCAGCTTATAT-GAGCTTACTGTTCATCAGCTCAGAAA
67545976 GAGCTTACCG
1 GAGCTTACCG
67545986 ATCCTGGCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
44 2 0.04
45 25 0.52
46 2 0.04
47 1 0.02
48 6 0.12
49 12 0.25
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (49 bp):
GAGCTTACCGTATCAGCTTATATGAGCTTACTGTTCATCAGCTCAGAAA
Found at i:67554849 original size:23 final size:23
Alignment explanation
Indices: 67554822--67554878 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
67554812 CTTATTGTTT
67554822 AGCTCGAA-AGAACTTA-CCTTATC
1 AGCTC-AATAGAACTTACCCTT-TC
*
67554845 AGCTCAATAGAGCTTACCCTTTC
1 AGCTCAATAGAACTTACCCTTTC
67554868 AGCTCAATAGA
1 AGCTCAATAGA
67554879 GTTTACTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 2 0.06
23 25 0.81
24 4 0.13
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (23 bp):
AGCTCAATAGAACTTACCCTTTC
Found at i:67554879 original size:23 final size:24
Alignment explanation
Indices: 67554834--67554884 Score: 79
Period size: 23 Copynumber: 2.2 Consensus size: 24
67554824 CTCGAAAGAA
67554834 CTTA-CCTTATCAGCTCAATAGAG
1 CTTACCCTTATCAGCTCAATAGAG
67554857 CTTACCCTT-TCAGCTCAATAGAG
1 CTTACCCTTATCAGCTCAATAGAG
*
67554880 TTTAC
1 CTTAC
67554885 TGTTCATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.33
Consensus pattern (24 bp):
CTTACCCTTATCAGCTCAATAGAG
Found at i:67565479 original size:2 final size:2
Alignment explanation
Indices: 67565472--67565501 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
67565462 CGGCTCTTGC
67565472 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67565502 TTGCACATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.