Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 223 of 425
Found at i:67566366 original size:79 final size:78
Alignment explanation
Indices: 67566209--67566429 Score: 250
Period size: 79 Copynumber: 2.8 Consensus size: 78
67566199 TATTCGAATG
* * * * **
67566209 ATATCCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCA
*
67566274 TTTGTGCGGGTTACT
64 TTTGTGCGAGTTACT
*
67566289 A-ATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCA
1 ATA-TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGCA
67566353 TTTGTGCGAGTTACT
64 TTTGTGCGAGTTACT
* * * *
67566368 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
67566430 TATGTGATTC
Statistics
Matches: 122, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 64 0.52
80 57 0.47
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATT
TGTGCGAGTTACT
Found at i:67566410 original size:40 final size:40
Alignment explanation
Indices: 67566213--67566403 Score: 221
Period size: 40 Copynumber: 4.8 Consensus size: 40
67566203 CGAATGATAT
* * * *
67566213 CCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
67566253 CCGGACTAAGAT-CCGAAGGCATTTGTGCGGGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
67566293 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
67566331 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
67566372 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
67566404 AGCTATATCC
Statistics
Matches: 133, Mismatches: 12, Indels: 12
0.85 0.08 0.08
Matches are distributed among these distances:
39 35 0.26
40 80 0.60
41 18 0.14
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:67574488 original size:40 final size:39
Alignment explanation
Indices: 67574402--67574606 Score: 238
Period size: 40 Copynumber: 5.2 Consensus size: 39
67574392 TTATCGAATG
* * *
67574402 ATATCC-GGCTAAGTCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACT
*
67574441 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACT
*
67574481 A-ATTCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT
* *
67574519 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT
* * *
67574559 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-CT
67574599 ATATCCGG
1 ATATCCGG
67574607 TTAAATTCCG
Statistics
Matches: 145, Mismatches: 14, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
38 25 0.17
39 28 0.19
40 76 0.52
41 16 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT
Found at i:67574543 original size:78 final size:77
Alignment explanation
Indices: 67574408--67574620 Score: 225
Period size: 78 Copynumber: 2.7 Consensus size: 77
67574398 AATGATATCC
* * * * **
67574408 GGCTAAGTCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGC
1 GGCTAAGCCCGAAGGC-ATTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATTTGTGC
*
67574473 GAGTTACTA-ATTCCG
63 GAGTTACTATA-ACCG
*
67574488 GGCTAAGCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
1 GGCTAAGCCCGAAGGCATTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGCATTTGTGCGA
67574553 GTTACTATAACCG
65 GTTACTATAACCG
* * *
67574566 GGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 GGCTAAG-CCCGAAGGCA-TTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
67574621 TATGTGATTC
Statistics
Matches: 115, Mismatches: 12, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
77 1 0.01
78 51 0.44
79 30 0.26
80 33 0.29
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (77 bp):
GGCTAAGCCCGAAGGCATTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTGTGCGAG
TTACTATAACCG
Found at i:67584967 original size:57 final size:59
Alignment explanation
Indices: 67584867--67584989 Score: 171
Period size: 57 Copynumber: 2.1 Consensus size: 59
67584857 TCGAAATGGA
* *
67584867 AAAAATGGTGAAATGGAAAACATTTGGAAATGATTATGGTTTTCTCCAAAATG-AAAAT
1 AAAAATGGAGAAATGGAAAACATTTGGAAATGATTATGATTTTCTCCAAAATGAAAAAT
**
67584925 AAAAATGGAGAAAT-GAAATTATTTGGAAATGGATT-TGATTTTCTCCAAAATGAAAAAT
1 AAAAATGGAGAAATGGAAAACATTTGGAAAT-GATTATGATTTTCTCCAAAATGAAAAAT
*
67584983 GAAAATG
1 AAAAATG
67584990 ACCTAAAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
57 30 0.52
58 28 0.48
ACGTcount: A:0.46, C:0.06, G:0.19, T:0.29
Consensus pattern (59 bp):
AAAAATGGAGAAATGGAAAACATTTGGAAATGATTATGATTTTCTCCAAAATGAAAAAT
Found at i:67589718 original size:421 final size:421
Alignment explanation
Indices: 67588934--67589749 Score: 1355
Period size: 421 Copynumber: 1.9 Consensus size: 421
67588924 AATCTTGATG
* * * * *
67588934 AAATACCCATTGTCCGTCAATTCTTACGAATGATCATTTCACATATATGCACTCCCGCGAACCTC
1 AAATACCCATTATCCGTCAATTCTTACAAATGATCATTTCACATATATACACTCCCACAAACCTC
* * *
67588999 ACTTCTTACGGTGGGATTACCAGTCCAGGCTTAATCCCCCGTATCATAAACTCATAAGGTGATGT
66 ACTTCTTACGGCGGGATTACCAGTCCAAGCTAAATCCCCCGTATCATAAACTCATAAGGTGATGT
* * *
67589064 TGGAATTACCAGTCCAGGCCAAATCCCTTATAACGACAAACACCCTTAGTGAGCTCGGATCTGAA
131 CGGAATTACCAGTCCAGGCCAAATCCCTTAGAACGACAAACACCCTTAATGAGCTCGGATCTGAA
* * * *
67589129 TTACCAGTCTAGGCTAAATTTAGACCCTAATCGGATTACTCGTCTGGGCTAAATCCATAATGCAC
196 TTACCAGTCCAGGCTAAATTCAGACCCTAATCGGATTACCCGTCCGGGCTAAATCCATAATGCAC
67589194 ACATATTCTTCGGGAGGCTTGATCATTCAAGGAACACCCGACTGGGTTAGATCCTTTTCATACTT
261 ACATATTCTTCGGGAGGCTTGATCATTCAAGGAACACCCGACTGGGTTAGATCCTTTTCATACTT
* * *
67589259 GAGATCACGGATTACCCATCTGGGCTAAATCCTTACTGCAACACATGCAGGATCTTTTGACACAT
326 GAGATCACAGATTACCCATCCGGGCTAAATCCTTACTGCAACACATGCAGGATCTCTTGACACAT
67589324 ATCAATATATATATATGAATTACGGTTTATT
391 ATCAATATATATATATGAATTACGGTTTATT
* * *
67589355 AAATACCCATTATCTGTCAATTTTTACAAATGATTATTTCACATATATACACTCCCACAAACCTC
1 AAATACCCATTATCCGTCAATTCTTACAAATGATCATTTCACATATATACACTCCCACAAACCTC
67589420 ACTTCTTACGGCGGGATTACCAGTCCAAGCTAAATCCCCCGTATCATAAACTCATAAGGTGATGT
66 ACTTCTTACGGCGGGATTACCAGTCCAAGCTAAATCCCCCGTATCATAAACTCATAAGGTGATGT
* * * *
67589485 CGGGATTACCAGTCTAGGCTAAATCCCTTAGAACGACAAACACCCTTAATGAGTTCGGATCTGAA
131 CGGAATTACCAGTCCAGGCCAAATCCCTTAGAACGACAAACACCCTTAATGAGCTCGGATCTGAA
* *
67589550 TTACTAGTCCAGGCTAAATTCAGACCCTAATTGGATTACCCGTCCGGGCTAAATCCATAATGCAC
196 TTACCAGTCCAGGCTAAATTCAGACCCTAATCGGATTACCCGTCCGGGCTAAATCCATAATGCAC
*
67589615 ACATATTCTTCGGGAGGCTTGATCATTCAAGGAACACCTGACTGGGTTAGATCCTTTTCATACTT
261 ACATATTCTTCGGGAGGCTTGATCATTCAAGGAACACCCGACTGGGTTAGATCCTTTTCATACTT
*
67589680 GAGATCACAGATTA-CCAGTCCGGGCTAAATCCTTACTGCAACACATGTAGGATCTCTTGACACA
326 GAGATCACAGATTACCCA-TCCGGGCTAAATCCTTACTGCAACACATGCAGGATCTCTTGACACA
67589744 TATCAA
390 TATCAA
67589750 CGAGGGTTTA
Statistics
Matches: 365, Mismatches: 29, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
420 3 0.01
421 362 0.99
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (421 bp):
AAATACCCATTATCCGTCAATTCTTACAAATGATCATTTCACATATATACACTCCCACAAACCTC
ACTTCTTACGGCGGGATTACCAGTCCAAGCTAAATCCCCCGTATCATAAACTCATAAGGTGATGT
CGGAATTACCAGTCCAGGCCAAATCCCTTAGAACGACAAACACCCTTAATGAGCTCGGATCTGAA
TTACCAGTCCAGGCTAAATTCAGACCCTAATCGGATTACCCGTCCGGGCTAAATCCATAATGCAC
ACATATTCTTCGGGAGGCTTGATCATTCAAGGAACACCCGACTGGGTTAGATCCTTTTCATACTT
GAGATCACAGATTACCCATCCGGGCTAAATCCTTACTGCAACACATGCAGGATCTCTTGACACAT
ATCAATATATATATATGAATTACGGTTTATT
Found at i:67601843 original size:55 final size:55
Alignment explanation
Indices: 67601716--67601852 Score: 150
Period size: 55 Copynumber: 2.5 Consensus size: 55
67601706 TCCCACGCTA
* ** *
67601716 GTGTTGTTTTGGCAGGTTGGCCCACGGTTGCTTGGCACAGGCGTGTCGCACGCCT
1 GTGTTGTTTTGGCAGGTTCGCCCACGGTTGCAAGGCACAGGCGTGTCGCACACCT
** * * * * *
67601771 GTGTTAATTTGACAGGTTCGACCACGGTTTCAAGGCACGGGCGTGTTGCACA-CT
1 GTGTTGTTTTGGCAGGTTCGCCCACGGTTGCAAGGCACAGGCGTGTCGCACACCT
*
67601825 CGTGTTGTTTTGGTAGGTTCGCCCACGG
1 -GTGTTGTTTTGGCAGGTTCGCCCACGG
67601853 CCATGTCGCA
Statistics
Matches: 65, Mismatches: 16, Indels: 2
0.78 0.19 0.02
Matches are distributed among these distances:
54 2 0.03
55 63 0.97
ACGTcount: A:0.13, C:0.23, G:0.34, T:0.30
Consensus pattern (55 bp):
GTGTTGTTTTGGCAGGTTCGCCCACGGTTGCAAGGCACAGGCGTGTCGCACACCT
Found at i:67606469 original size:47 final size:47
Alignment explanation
Indices: 67606415--67607087 Score: 469
Period size: 47 Copynumber: 14.1 Consensus size: 47
67606405 TTAGGATTTT
* * *
67606415 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATATGCATATATGTGATAAAGCCGAATGGCCA
* * *
67606462 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAATATGCATATATGTGATAAAGCCGAATGGCCA
** * * *
67606509 ATGTGATGAATGTGAGCATGCATATGTATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATATGCATATATGTGATAAAGCCGAATGGCCA
* * * * * *
67606556 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCTAATGGCTA
1 ATGTGATGAATGTGAATATGCATATATGTGATAAAGCCGAATGGCCA
** * * *
67606603 ATGTGAAAAATGTATGAGAAATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATG--TGA-ATATGCATATATGTGATAAAGCCGAATGGCCA
* * * *
67606651 ATGTGA-AATATGTATGAGATATGC--ATATGTGGTAAAGCTGAATGGTCA
1 ATGTGATGA-ATG--TGA-ATATGCATATATGTGATAAAGCCGAATGGCCA
* * *
67606699 ATGTGAAATATATATATGAGATATGCATATA--TGATAAGGCCGAATGGCCA
1 ATGTG--AT-GA-ATGTGA-ATATGCATATATGTGATAAAGCCGAATGGCCA
** * * *
67606749 ATGTGATGAATGTGAGCATGCATATGTATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATATGCATATATGTGATAAAGCCGAATGGCCA
* * * * * *
67606796 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCTAATGGCTA
1 ATGTGATGAATGTGAATATGCATATATGTGATAAAGCCGAATGGCCA
** * * *
67606843 ATGTGAAAAATGTATGAGAAATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATG--TGA-ATATGCATATATGTGATAAAGCCGAATGGCCA
* * * *
67606891 ATGTGA-AATATGTATGAGATATGC--ATATGTGGTAAAGCTGAATGGTCA
1 ATGTGATGA-ATG--TGA-ATATGCATATATGTGATAAAGCCGAATGGCCA
* * *
67606939 ATGTGAAATATATATATGAGATATGC--ATATGTGATAAGGCCGAATGGCCA
1 ATGTG--AT-GA-ATGTGA-ATATGCATATATGTGATAAAGCCGAATGGCCA
** * *
67606989 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATATGCATATATGTGATAAAGCCGAATGGCCA
* * * *
67607036 ATGTGGTGAATATGAGATATGC--ATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGA-ATATGCATATATGTGATAAAGCCGAATGGCCA
67607082 ATGTGA
1 ATGTGA
67607088 AATATATATA
Statistics
Matches: 524, Mismatches: 77, Indels: 51
0.80 0.12 0.08
Matches are distributed among these distances:
45 12 0.02
46 35 0.07
47 239 0.46
48 146 0.28
49 6 0.01
50 75 0.14
52 11 0.02
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAATATGCATATATGTGATAAAGCCGAATGGCCA
Found at i:67606490 original size:25 final size:25
Alignment explanation
Indices: 67606462--67606533 Score: 64
Period size: 24 Copynumber: 3.0 Consensus size: 25
67606452 CGAATGGCCA
67606462 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* *
67606487 ATGTGAT-AAGGTCG-A-ATGGC-CA-
1 ATGTGATGAATGT-GAACAT-GCATAT
*
67606509 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
67606534 GTATGATAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
22 8 0.23
23 9 0.26
24 10 0.29
25 8 0.23
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:67606515 original size:22 final size:22
Alignment explanation
Indices: 67606444--67606515 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
67606434 GCATATATGA
*
67606444 GATAAGGCCGAATGGCCAATGT
1 GATAAGGTCGAATGGCCAATGT
* *
67606466 GATGAATGT-GAACAT-GCATATATGT
1 GAT-AAGGTCG-A-ATGGC-CA-ATGT
67606491 GATAAGGTCGAATGGCCAATGT
1 GATAAGGTCGAATGGCCAATGT
67606513 GAT
1 GAT
67606516 GAATGTGAGC
Statistics
Matches: 38, Mismatches: 5, Indels: 14
0.67 0.09 0.25
Matches are distributed among these distances:
22 11 0.29
23 9 0.24
24 10 0.26
25 8 0.21
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
GATAAGGTCGAATGGCCAATGT
Found at i:67606637 original size:48 final size:48
Alignment explanation
Indices: 67606579--67607145 Score: 532
Period size: 48 Copynumber: 11.8 Consensus size: 48
67606569 GAACATGCAT
* * *
67606579 ATATGTGGTAAAGCCTAATGGCTAATGTGAAAAATGTATGAGAAATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
*
67606627 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* *
67606675 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATGTATGAGATATGC
* * * * ** *
67606725 ATATATGATAAGGCCGAATGGCCAATGTGATGAATG--TGAG-CATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* * * *** *
67606770 ATATGTATGATAAGGCCGAATGGCCAATGTGGTGAA--TATGA-ACATGC
1 ATATG--TGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* * *
67606817 ATATATGTGGTAAAGCCTAATGGCTAATGTGAAAAATGTATGAGAAATGT
1 --ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
*
67606867 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* *
67606915 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATGTATGAGATATGC
* * * ** *
67606965 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATG--TGAG-CATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* * ***
67607010 ATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAA--TATGAGATATGC
1 ATATGTG-G-TAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* *
67607058 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATGTATGAGATATGC
* *
67607108 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTA
67607146 GGCGATGTGC
Statistics
Matches: 436, Mismatches: 54, Indels: 58
0.80 0.10 0.11
Matches are distributed among these distances:
45 19 0.04
46 26 0.06
47 91 0.21
48 166 0.38
49 12 0.03
50 121 0.28
51 1 0.00
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.29
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
Found at i:67606761 original size:240 final size:240
Alignment explanation
Indices: 67606479--67607145 Score: 1187
Period size: 240 Copynumber: 2.8 Consensus size: 240
67606469 GAATGTGAAC
*
67606479 ATGCATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTATGATAAG
1 ATGCATATA--TGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTATGATAAG
67606544 GCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCTAATGGCTAATGTGA
64 GCCGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCTAATGGCTAATGTGA
67606609 AAAATGTATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
129 AAAATGTATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
67606674 CATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGAT
194 CATATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGAT
67606721 ATGCATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTATGATAAGGC
1 ATGCATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTATGATAAGGC
67606786 CGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCTAATGGCTAATGTGAAA
66 CGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCTAATGGCTAATGTGAAA
67606851 AATGTATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
131 AATGTATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
67606916 TATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGAT
196 TATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGAT
* *
67606961 ATGCATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGC
1 ATGCATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTATGATAAGGC
* *
67607026 CGAATGGCCAATGTGGTGAATATGAGATATGC--ATATGTGGTAAAGCCGAATGG-TCAATGTGA
66 CGAATGGCCAATGTGGTGAATATGA-ACATGCATATATGTGGTAAAGCCTAATGGCT-AATGTGA
* * *
67607088 AATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
129 AA-A-ATGTATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
67607146 GGCGATGTGC
Statistics
Matches: 413, Mismatches: 8, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
238 1 0.00
239 29 0.07
240 319 0.77
241 55 0.13
242 9 0.02
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.28
Consensus pattern (240 bp):
ATGCATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTATGATAAGGC
CGAATGGCCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCTAATGGCTAATGTGAAA
AATGTATGAGAAATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCA
TATGTGGTAAAGCTGAATGGTCAATGTGAAATATATATATGAGAT
Found at i:67607044 original size:25 final size:25
Alignment explanation
Indices: 67606969--67607044 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
67606959 ATATGCATAT
67606969 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
67606994 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
67607016 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
67607041 GTGA
1 GTGA
67607045 ATATGAGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:67607342 original size:37 final size:36
Alignment explanation
Indices: 67607292--67607400 Score: 182
Period size: 37 Copynumber: 3.0 Consensus size: 36
67607282 GGAAATATAT
67607292 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT-TG
67607329 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTTG
* *
67607366 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
67607401 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
36 3 0.04
37 64 0.93
38 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (36 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTG
Found at i:67610084 original size:12 final size:13
Alignment explanation
Indices: 67610067--67610104 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
67610057 ATCCTGGAAT
67610067 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
67610079 ATTAAGAACACATA
1 ATTAAGAACA-AGA
67610093 ATTAAGAACAAG
1 ATTAAGAACAAG
67610105 CCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:67617657 original size:32 final size:32
Alignment explanation
Indices: 67617621--67617681 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
67617611 TAACTAGGCA
67617621 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACG
*
67617653 TCCGAACTCGTTGAGTTGAGTCTGAGTTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTT
67617682 GTGAGATGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.18, C:0.20, G:0.28, T:0.34
Consensus pattern (32 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTTACG
Found at i:67617707 original size:79 final size:79
Alignment explanation
Indices: 67617573--67617727 Score: 256
Period size: 79 Copynumber: 2.0 Consensus size: 79
67617563 GGATGCGAAT
* * * *
67617573 GTCCGAACTTGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAACTCGTTGAGTT
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAAGCATCAGAACTCATTGAGTT
67617638 GAGTCCGAGTTTAC
66 GAGTCCGAGTTTAC
* *
67617652 GTCCGAACTCGTTGAGTTGAGTCTGAGTTTGTGAGATGTAACTAAGCATCAGAACTCATTGAGTT
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAAGCATCAGAACTCATTGAGTT
67617717 GAGTCCGAGTT
66 GAGTCCGAGTT
67617728 CACTTATGGA
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 70 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.31
Consensus pattern (79 bp):
GTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAAGCATCAGAACTCATTGAGTT
GAGTCCGAGTTTAC
Found at i:67619712 original size:31 final size:31
Alignment explanation
Indices: 67619674--67619738 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
67619664 TGATGTCATG
67619674 AGTATGATTTGTTTGAGTAAATGAATGGATA
1 AGTATGATTTGTTTGAGTAAATGAATGGATA
67619705 AGTATGATTTGTTTGAGTAAATGAATGGATA
1 AGTATGATTTGTTTGAGTAAATGAATGGATA
67619736 AGT
1 AGT
67619739 CAAGCTATCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.38
Consensus pattern (31 bp):
AGTATGATTTGTTTGAGTAAATGAATGGATA
Found at i:67620768 original size:15 final size:15
Alignment explanation
Indices: 67620748--67620812 Score: 71
Period size: 15 Copynumber: 4.4 Consensus size: 15
67620738 GTATCTTCGG
67620748 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
67620763 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
67620778 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
* *
67620793 TTTTTTTATTC-GGT
1 TTTCTTTATTCTGGA
67620807 TTTCTT
1 TTTCTT
67620813 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
14 9 0.22
15 30 0.73
16 2 0.05
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:67620780 original size:30 final size:29
Alignment explanation
Indices: 67620746--67620812 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
67620736 TCGTATCTTC
67620746 GGTTTCTTTAT-TCTGGATTTCTTTATTCTG
1 GGTTTCTTTATCT-TGGATTTCTTTATTC-G
* *
67620776 GGTTTCTCTATCTTGGATTTTTTTATTCG
1 GGTTTCTTTATCTTGGATTTCTTTATTCG
*
67620805 GTTTTCTT
1 GGTTTCTT
67620813 GTTATCTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 7 0.22
30 24 0.75
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.16, T:0.61
Consensus pattern (29 bp):
GGTTTCTTTATCTTGGATTTCTTTATTCG
Found at i:67622517 original size:40 final size:40
Alignment explanation
Indices: 67622434--67622576 Score: 227
Period size: 40 Copynumber: 3.6 Consensus size: 40
67622424 CAACTCGCAC
* *
67622434 AAATGCCTTCGGGTCTTAA-CCGGATATAA-CAACTCGCAC
1 AAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTAGCAT
67622473 AAATGCCTTCGGGTCTTAACCCGGATATAATCACTAGCAT
1 AAATGCCTTCGGGTCTTAACCCGGATATAATCACTAGCAT
67622513 AAATGCCTTCGGGTCTTAACCCGGATATAATCACTAGCAT
1 AAATGCCTTCGGGTCTTAACCCGGATATAATCACTAGCAT
* *
67622553 AAATGCCTTCGGGGCTTAGCCCGG
1 AAATGCCTTCGGGTCTTAACCCGG
67622577 GTATCATTCA
Statistics
Matches: 98, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 19 0.19
40 78 0.80
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGGTCTTAACCCGGATATAATCACTAGCAT
Found at i:67630559 original size:40 final size:39
Alignment explanation
Indices: 67630513--67630661 Score: 181
Period size: 40 Copynumber: 3.7 Consensus size: 39
67630503 TATAACCACA
* *
67630513 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATATAGC-ACT
* *
67630553 CGCACAAATGCCTTCGGGTCTTAACCCGGATATAATCACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCACT
* *
67630593 AGCATAAATGCCTTCGGGTCTTAACCCGGATATAATCACT
1 AGCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCACT
* * * *
67630633 AGCATAAATGCCTTTGGGGCTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAACCCGG
67630662 GTATCATTCA
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 97 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCACT
Found at i:67630642 original size:80 final size:80
Alignment explanation
Indices: 67630501--67630661 Score: 207
Period size: 80 Copynumber: 2.0 Consensus size: 80
67630491 AATTTAGCCA
* * *
67630501 GATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCT
1 GATATAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTAGCACAAATGCCT
*
67630566 TCGGGTCTTAACCCG
66 TCGGGGCTTAACCCG
* * * * *
67630581 GATATAATCACTAGCATAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTAGCATAAATGCC
1 GATATAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTAGCACAAATGCC
* *
67630645 TTTGGGGCTTAGCCCG
65 TTCGGGGCTTAACCCG
67630661 G
1 G
67630662 GTATCATTCA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
80 67 0.97
81 2 0.03
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
GATATAACCACAAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTAGCACAAATGCCT
TCGGGGCTTAACCCG
Found at i:67637638 original size:40 final size:40
Alignment explanation
Indices: 67637553--67637703 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
67637543 AATTGAATGA
* * *
67637553 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
67637593 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
67637634 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
67637673 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
67637704 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:67637717 original size:40 final size:40
Alignment explanation
Indices: 67637590--67637719 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
67637580 ATGCTGGAAA
* * * *
67637590 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
67637630 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
67637670 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
67637710 TTATATCCGG
1 TTATATCCGG
67637720 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:67644145 original size:46 final size:46
Alignment explanation
Indices: 67644048--67644222 Score: 247
Period size: 46 Copynumber: 3.9 Consensus size: 46
67644038 TTAGGATTTT
67644048 ATGTGATGAATGTGAACATGCGTA--TGTGAT--GGCCGAATGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGCCA
*
67644090 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAAT-GCCA
67644137 ATGT-ATGAATGTGAACATGCGTATGTGTGATAAGGCCGAAT-CCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGCCA
** * *
67644181 ATGTGATGAATGTGAACATGTATATATGTGGTAAGG-CGAATG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATG
67644223 GCTAATGCGA
Statistics
Matches: 120, Mismatches: 6, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
42 23 0.19
44 18 0.15
45 27 0.22
46 44 0.37
47 8 0.07
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (46 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGCCA
Found at i:67644216 original size:91 final size:88
Alignment explanation
Indices: 67644048--67644229 Score: 269
Period size: 91 Copynumber: 2.0 Consensus size: 88
67644038 TTAGGATTTT
*
67644048 ATGTGATGAATGTGAACATGCGTATGTGATGGCCGAATGCCAATGTGATGAATGTGAACATGTGT
1 ATGTGATGAATGTGAACATGCGTATGTGATGGCCGAATGCCAATGTGATGAATGTGAACATGTAT
*
67644113 ATGTGTGATAAGGCCGAATGGCCA
66 ATATGTGATAAGG-CGAATGGCCA
67644137 ATGT-ATGAATGTGAACATGCGTATGTGTGATAAGGCCGAAT-CCAATGTGATGAATGTGAACAT
1 ATGTGATGAATGTGAACATGCGTA--TGTGAT--GGCCGAATGCCAATGTGATGAATGTGAACAT
* *
67644200 GTATATATGTGGTAAGGCGAATGGCTA
62 GTATATATGTGATAAGGCGAATGGCCA
67644227 ATG
1 ATG
67644230 CGAAATGTGT
Statistics
Matches: 85, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
88 19 0.22
89 4 0.05
90 18 0.21
91 36 0.42
92 8 0.09
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (88 bp):
ATGTGATGAATGTGAACATGCGTATGTGATGGCCGAATGCCAATGTGATGAATGTGAACATGTAT
ATATGTGATAAGGCGAATGGCCA
Found at i:67646032 original size:2 final size:2
Alignment explanation
Indices: 67646025--67646053 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
67646015 TTTGGCCACA
67646025 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
67646054 CATCTCATAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:67646122 original size:46 final size:46
Alignment explanation
Indices: 67646055--67646144 Score: 126
Period size: 46 Copynumber: 2.0 Consensus size: 46
67646045 ATATATATAC
* * * *
67646055 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGACCTTACCACATATCT
* *
67646101 ATCTCATACACATTTCGCATTAGCCATTCGACCTTACCACATAT
1 ATCTCATACACATCTCACATTAGCCATTCGACCTTACCACATAT
67646145 ATACATGTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.34
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGACCTTACCACATATCT
Found at i:67646183 original size:47 final size:47
Alignment explanation
Indices: 67646118--67646333 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
67646108 ACACATTTCG
* * * * **
67646118 CATTAGCCATTCGACCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
67646165 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
67646212 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
67646259 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
67646306 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
67646334 TATATACAGG
Statistics
Matches: 162, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 162 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:67646221 original size:94 final size:94
Alignment explanation
Indices: 67646118--67646359 Score: 376
Period size: 94 Copynumber: 2.5 Consensus size: 94
67646108 ACACATTTCG
* *
67646118 CATTAGCCATTCGACCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
67646183 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACGCATGTTCACATTCATCA
* * **
67646212 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
67646277 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACGCATGTTCACATTCATCA
* *
67646306 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACAT
1 CATTGGCCATTCGGCC-T-T-AC-CACATATATACATGTTCACATTCATCACAT
67646360 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 104 0.79
95 1 0.01
96 1 0.01
97 1 0.01
98 25 0.19
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATACGCATGTTCACATTCATCA
Found at i:67653199 original size:10 final size:10
Alignment explanation
Indices: 67653180--67653226 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
67653170 TTCCCAATCC
67653180 ATCA-ACCAA
1 ATCATACCAA
67653189 ATCATACCAA
1 ATCATACCAA
*
67653199 ATCTAAACCAAA
1 ATC-ATACC-AA
67653211 ATCATACCAA
1 ATCATACCAA
*
67653221 AGCATA
1 ATCATA
67653227 TGTTTCAGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 4 0.12
10 15 0.47
11 8 0.25
12 5 0.16
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.17
Consensus pattern (10 bp):
ATCATACCAA
Found at i:67654056 original size:43 final size:41
Alignment explanation
Indices: 67653942--67654093 Score: 114
Period size: 43 Copynumber: 3.6 Consensus size: 41
67653932 TACAATTCCA
* * *
67653942 ACATCCCAGACGTGGTCTTACA-TGTAATCAAATATCAATGCC
1 ACATCCCAGACGTGGTCTTACACT-AAATCAAGTA-CGATGCC
** * *
67653984 ACAATCCCAGACAAGGTCTTATACGAAATCAAGTACGATGCC
1 AC-ATCCCAGACGTGGTCTTACACTAAATCAAGTACGATGCC
*
67654026 AGCATCCCAGACGTGGTCCTACACATAAATCATAAGT-CGATGCC
1 A-CATCCCAGACGTGGTCTTACAC-TAAATC--AAGTACGATGCC
67654070 A-ATGCCCCA-ATCGTGGTCTTACAC
1 ACAT--CCCAGA-CGTGGTCTTACAC
67654094 AATAACACAT
Statistics
Matches: 88, Mismatches: 13, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
42 28 0.32
43 32 0.36
44 24 0.27
45 4 0.05
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.22
Consensus pattern (41 bp):
ACATCCCAGACGTGGTCTTACACTAAATCAAGTACGATGCC
Found at i:67658955 original size:40 final size:39
Alignment explanation
Indices: 67658910--67659117 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
67658900 CGGAATACAA
*
67658910 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
67658950 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
67658990 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
67659030 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
67659070 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
67659110 CCGGATAT
1 CCGGATAT
67659118 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:67659057 original size:80 final size:81
Alignment explanation
Indices: 67658910--67659115 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
67658900 CGGAATACAA
* * * *
67658910 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
67658974 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
67658990 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
67659053 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
67659070 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
67659116 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:67666941 original size:40 final size:39
Alignment explanation
Indices: 67666896--67667103 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
67666886 CGGAATACAA
*
67666896 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
67666936 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
67666976 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
67667016 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
67667056 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
67667096 CCGGATAT
1 CCGGATAT
67667104 CATTTAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:67667043 original size:80 final size:81
Alignment explanation
Indices: 67666896--67667101 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 81
67666886 CGGAATACAA
* * * *
67666896 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
67666960 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
67666976 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
67667039 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
67667056 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
67667102 ATCATTTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 104 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:67671653 original size:43 final size:44
Alignment explanation
Indices: 67671533--67671691 Score: 139
Period size: 43 Copynumber: 3.7 Consensus size: 44
67671523 AGCTTGTACA
* * *
67671533 ATGCCAACGTCCCAGACGTGGTCTTACAGGT-AATCAAATATCG
1 ATGCCACCATCCCAGACGTGGTCTTACACGTAAATCAAATATCG
** * *
67671576 ATGCCACTGTCCTAGACAG-GGTCTTACACG-AAATCAAGTAT-G
1 ATGCCACCATCCCAGAC-GTGGTCTTACACGTAAATCAAATATCG
* * * *
67671618 ATGCTACCATCCCAAACGTGGTCTTACACGTAAATCATAA-GTCA
1 ATGCCACCATCCCAGACGTGGTCTTACACGTAAATCA-AATATCG
* * *
67671662 ATGCCAACGTCCCAGACATGGTCTTACACG
1 ATGCCACCATCCCAGACGTGGTCTTACACG
67671692 ATAACACATA
Statistics
Matches: 92, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
41 1 0.01
42 24 0.26
43 40 0.43
44 27 0.29
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (44 bp):
ATGCCACCATCCCAGACGTGGTCTTACACGTAAATCAAATATCG
Found at i:67674911 original size:31 final size:31
Alignment explanation
Indices: 67674876--67674939 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
67674866 TCAATAAGAG
67674876 TAAGGCTTGGATTAAGAAAAATAACAAAATT
1 TAAGGCTTGGATTAAGAAAAATAACAAAATT
67674907 TAAGGCTTGGATTAAGAAAAATAACAAAATT
1 TAAGGCTTGGATTAAGAAAAATAACAAAATT
67674938 TA
1 TA
67674940 CCAAATGTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.52, C:0.06, G:0.16, T:0.27
Consensus pattern (31 bp):
TAAGGCTTGGATTAAGAAAAATAACAAAATT
Found at i:67678565 original size:32 final size:32
Alignment explanation
Indices: 67678529--67678591 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
67678519 CAATCTCTTT
67678529 TCTTTTCAAGTCTGCTGATAAACCGTAATTTA
1 TCTTTTCAAGTCTGCTGATAAACCGTAATTTA
*
67678561 TCTTTTCAAGTCTGTTGATAAACCGTAATTT
1 TCTTTTCAAGTCTGCTGATAAACCGTAATTT
67678592 TTACATATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (32 bp):
TCTTTTCAAGTCTGCTGATAAACCGTAATTTA
Found at i:67683567 original size:5 final size:5
Alignment explanation
Indices: 67683557--67683594 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
67683547 ATGATGTTTA
67683557 ATTTT ATTTT ATTTT ATTTTT ATTTTT ATTTT -TTTT AT
1 ATTTT ATTTT ATTTT A-TTTT A-TTTT ATTTT ATTTT AT
67683595 GTTTTTATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.13
5 16 0.52
6 11 0.35
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
ATTTT
Found at i:67683577 original size:6 final size:6
Alignment explanation
Indices: 67683553--67683603 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
67683543 TATGATGATG
* * *
67683553 TTTAAT TTTA-T TTTA-T TTTATT TTTATT TTTATT TTT-TT TATGTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
67683598 TTTATT
1 TTTATT
67683604 AATTTCACCT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
5 14 0.35
6 26 0.65
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:67683577 original size:16 final size:17
Alignment explanation
Indices: 67683553--67683603 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
67683543 TATGATGATG
*
67683553 TTTAATTTTA-TTTTAT
1 TTTATTTTTATTTTTAT
67683569 TTTATTTTTATTTTTAT
1 TTTATTTTTATTTTTAT
*
67683586 TTT-TTTTATGTTTTTAT
1 TTTATTTT-TATTTTTAT
67683603 T
1 T
67683604 AATTTCACCT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 13 0.42
17 18 0.58
ACGTcount: A:0.18, C:0.00, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTATTTTTATTTTTAT
Found at i:67685430 original size:40 final size:40
Alignment explanation
Indices: 67685371--67685578 Score: 193
Period size: 40 Copynumber: 5.2 Consensus size: 40
67685361 CAATTGAATG
* * * * *
67685371 ATATCTGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
67685411 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
67685451 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
67685491 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
67685531 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
67685571 ATATCCGG
1 ATATCCGG
67685579 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 2 0.01
40 135 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:67685511 original size:80 final size:80
Alignment explanation
Indices: 67685377--67685578 Score: 228
Period size: 80 Copynumber: 2.5 Consensus size: 80
67685367 AATGATATCT
* * ** * * *
67685377 GGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-TTGT
1 GGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CATTTGT
*
67685441 GCTAGT-GACCACATCC
65 GCAAGTCGACC-CATCC
* * *
67685457 GGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATTTGTG
1 GGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATTTGTG
** *
67685522 CAAGTCGTTCTATCC
66 CAAGTCGACCCATCC
* *
67685537 GGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 GGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
67685579 TTGTATTCCG
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
79 2 0.02
80 99 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
GGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATTTGTG
CAAGTCGACCCATCC
Found at i:67688926 original size:13 final size:13
Alignment explanation
Indices: 67688908--67688934 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
67688898 GAAGTAATCA
67688908 CACACGGGCGTGT
1 CACACGGGCGTGT
67688921 CACACGGGCGTGT
1 CACACGGGCGTGT
67688934 C
1 C
67688935 CCTGATGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:67689190 original size:29 final size:29
Alignment explanation
Indices: 67689148--67689207 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
67689138 CTTTAGGAGT
67689148 TTTGGGTTTTTCTTTATGTTTTGTATTCA
1 TTTGGGTTTTTCTTTATGTTTTGTATTCA
67689177 TTTGGGTTTTTCTTTATGTTTTGTATTCA
1 TTTGGGTTTTTCTTTATGTTTTGTATTCA
67689206 TT
1 TT
67689208 ATTCTTCTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.10, C:0.07, G:0.17, T:0.67
Consensus pattern (29 bp):
TTTGGGTTTTTCTTTATGTTTTGTATTCA
Found at i:67695463 original size:40 final size:40
Alignment explanation
Indices: 67695393--67695606 Score: 290
Period size: 40 Copynumber: 5.4 Consensus size: 40
67695383 AAGCCAAGTA
* * * *
67695393 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
67695432 CCTTAGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67695472 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
67695512 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
67695552 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
67695592 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
67695607 TCGGTTATCA
Statistics
Matches: 158, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.08
40 146 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67699870 original size:3 final size:3
Alignment explanation
Indices: 67699857--67699888 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
67699847 AAAAGTAAAT
67699857 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA T
67699889 TAAATTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:67706464 original size:53 final size:54
Alignment explanation
Indices: 67706379--67706585 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
67706369 TTCTTTTTTA
* * *
67706379 AACTTACCATTGCCATGTCTTGCCATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
67706432 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * ** * * * *
67706486 TAGTTTATCAGTGCCATGTCTTCACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
67706541 AACTTATCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
67706586 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 30, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 46 0.38
54 37 0.30
55 39 0.32
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:67714109 original size:11 final size:11
Alignment explanation
Indices: 67714077--67714118 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
67714067 ATTTAGCCAT
67714077 TTTTTATTTTA
1 TTTTTATTTTA
**
67714088 -TTGCATTTTA
1 TTTTTATTTTA
*
67714098 TTTTTGTTTTA
1 TTTTTATTTTA
67714109 TTTTTATTTT
1 TTTTTATTTT
67714119 TAATTACTAA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:67717144 original size:15 final size:16
Alignment explanation
Indices: 67717110--67717144 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
67717100 TTTTATTTTA
67717110 TTTTCTAATTTTCTTC
1 TTTTCTAATTTTCTTC
67717126 TTTTCTAATTTTC-TC
1 TTTTCTAATTTTCTTC
67717141 TTTT
1 TTTT
67717145 ATTAGCTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTCTAATTTTCTTC
Found at i:67720738 original size:37 final size:37
Alignment explanation
Indices: 67720685--67720806 Score: 208
Period size: 37 Copynumber: 3.3 Consensus size: 37
67720675 TATAAAAGAA
*
67720685 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
67720722 GTCTTACTCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
67720759 GTCTTACCCGATCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
67720796 GTCTCACCCGG
1 GTCTTACCCGG
67720807 AACATATTCC
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 79 1.00
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:67720800 original size:21 final size:21
Alignment explanation
Indices: 67720702--67720800 Score: 56
Period size: 18 Copynumber: 5.2 Consensus size: 21
67720692 CCGGACATAA
67720702 TCTCCACACGTAGTCATCGGG
1 TCTCCACACGTAGTCATCGGG
* * **
67720723 TCT-TACTCG--GTCAT--AA
1 TCTCCACACGTAGTCATCGGG
67720739 TCTCCACACGTAGTCATCGGG
1 TCTCCACACGTAGTCATCGGG
* * **
67720760 TCT-TACCCG-A-TCAT--AA
1 TCTCCACACGTAGTCATCGGG
67720776 TCTCCACACGTAGTCATCGGG
1 TCTCCACACGTAGTCATCGGG
67720797 TCTC
1 TCTC
67720801 ACCCGGAACA
Statistics
Matches: 52, Mismatches: 16, Indels: 20
0.59 0.18 0.23
Matches are distributed among these distances:
16 6 0.12
17 8 0.15
18 10 0.19
19 10 0.19
20 8 0.15
21 10 0.19
ACGTcount: A:0.21, C:0.32, G:0.18, T:0.28
Consensus pattern (21 bp):
TCTCCACACGTAGTCATCGGG
Found at i:67720963 original size:49 final size:49
Alignment explanation
Indices: 67720908--67721121 Score: 358
Period size: 49 Copynumber: 4.4 Consensus size: 49
67720898 TTTTACATTA
*
67720908 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
67720957 GCCATTAGGCCTCATCACATATACATA-ACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
*
67721005 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* * *
67721054 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCGCATTG
1 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
* *
67721103 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTCATCACA
67721122 CATATATGTA
Statistics
Matches: 158, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 48 0.30
49 110 0.70
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACACTTTCACATTCACCACATCG
Found at i:67721009 original size:97 final size:98
Alignment explanation
Indices: 67720908--67721121 Score: 367
Period size: 97 Copynumber: 2.2 Consensus size: 98
67720898 TTTTACATTA
67720908 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
67720973 ACATATACATA-ACTTTCACATTCACCACATCG
66 ACATATACATACACTTTCACATTCACCACATCG
* *
67721005 GCCATTAGGCCTCATCACATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATC
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
* * *
67721070 ACATATACATACACTTTCACATTCATCGCATTG
66 ACATATACATACACTTTCACATTCACCACATCG
*
67721103 GCCATTCGGCCTTATCACA
1 GCCATTAGGCCTTATCACA
67721122 CATATATGTA
Statistics
Matches: 109, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
97 74 0.68
98 35 0.32
ACGTcount: A:0.29, C:0.33, G:0.09, T:0.29
Consensus pattern (98 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATC
ACATATACATACACTTTCACATTCACCACATCG
Found at i:67724305 original size:24 final size:24
Alignment explanation
Indices: 67724273--67724335 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
67724263 AATCTCAAAT
*
67724273 GCACTATGTGTGCGATTTATTATG
1 GCACTATGTGTGCGATTTACTATG
67724297 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
67724321 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
67724336 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:67729583 original size:56 final size:57
Alignment explanation
Indices: 67729514--67729624 Score: 154
Period size: 56 Copynumber: 2.0 Consensus size: 57
67729504 TATATATATA
* * * *
67729514 TGGCCCACTAGGCCC-AATCTCTTTCATATGGCCCATTAGGCCC-ATTCACATTTATG
1 TGGCCCACTAGGCCCAAATCACATTCATATGG-CCACTAGGCCCAAATCACATTTATG
*
67729570 TGGCCCATTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAAATCACATTTA
1 TGGCCCACTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAAATCACATTTA
67729625 CAGTCGTGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 24 0.50
57 24 0.50
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.27
Consensus pattern (57 bp):
TGGCCCACTAGGCCCAAATCACATTCATATGGCCACTAGGCCCAAATCACATTTATG
Found at i:67729620 original size:28 final size:28
Alignment explanation
Indices: 67729511--67729622 Score: 136
Period size: 28 Copynumber: 4.0 Consensus size: 28
67729501 ACCTATATAT
* *
67729511 ATATGGCCCACTAGGCCCAATCTCTTTC
1 ATATGGCCCACTAGGCCCAATCACATTC
* * *
67729539 ATATGGCCCATTAGGCCCATTCACATTT
1 ATATGGCCCACTAGGCCCAATCACATTC
* *
67729567 ATGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCC-AATCACATTC
67729596 ATATGG-CCACTAGGCCCAAATCACATT
1 ATATGGCCCACTAGGCCC-AATCACATT
67729623 TACAGTCGTG
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 60 0.82
29 13 0.18
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATCACATTC
Found at i:67729867 original size:16 final size:16
Alignment explanation
Indices: 67729854--67729889 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
67729844 CTTTTTCGGT
*
67729854 ATTTTGGCTTTTCGAC
1 ATTTCGGCTTTTCGAC
*
67729870 ATTTCGGCTTTTCGAG
1 ATTTCGGCTTTTCGAC
67729886 ATTT
1 ATTT
67729890 ACTGATCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.17, G:0.19, T:0.50
Consensus pattern (16 bp):
ATTTCGGCTTTTCGAC
Found at i:67731079 original size:28 final size:28
Alignment explanation
Indices: 67731047--67731102 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
67731037 CTTAACCAAG
*
67731047 ACCTACTATCACATAATTAACACTTGAC
1 ACCTACTATCACATAAGTAACACTTGAC
67731075 ACCTACTATCACATAAGTAACACTTGAC
1 ACCTACTATCACATAAGTAACACTTGAC
67731103 TAGGAATGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.39, C:0.29, G:0.05, T:0.27
Consensus pattern (28 bp):
ACCTACTATCACATAAGTAACACTTGAC
Found at i:67732224 original size:26 final size:25
Alignment explanation
Indices: 67732172--67732225 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
67732162 TCTATCTTTA
*
67732172 TTTATCTTCTTTAAGTACTTTTTAT
1 TTTATCTTCTTTAAGTACTTTTCAT
*
67732197 TTTATTTTCATTTAA-TACTATTTCAT
1 TTTATCTTC-TTTAAGTACT-TTTCAT
67732223 TTT
1 TTT
67732226 TAGGTATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 12 0.48
26 13 0.52
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.65
Consensus pattern (25 bp):
TTTATCTTCTTTAAGTACTTTTCAT
Found at i:67736578 original size:55 final size:54
Alignment explanation
Indices: 67736437--67736641 Score: 236
Period size: 55 Copynumber: 3.8 Consensus size: 54
67736427 ATCATTTTGA
* * * *
67736437 AACTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTATAG
* * * *
67736490 AACTCAGCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTACCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTT-CCTTATAG
* * *
67736544 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTATAG
* *
67736598 AACCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATC
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATC
67736642 TTTAAACCCT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 8 0.06
55 70 0.55
56 5 0.04
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTATAG
Found at i:67739484 original size:22 final size:20
Alignment explanation
Indices: 67739426--67739477 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 20
67739416 ATCACCCCAA
*
67739426 TTTTATTTTATTTTATTTAT
1 TTTTATTTTATATTATTTAT
67739446 TTTTAATTCTTATATTATTTAT
1 TTTT-ATT-TTATATTATTTAT
67739468 TTTTATTTTA
1 TTTTATTTTA
67739478 CTAATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 7 0.24
21 6 0.21
22 16 0.55
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTATTTTATATTATTTAT
Found at i:67739534 original size:17 final size:17
Alignment explanation
Indices: 67739511--67739562 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
67739501 TTCTTATACT
67739511 TATATTTTTAATATTTTA
1 TATATTTTTAAT-TTTTA
67739529 -ATA-TTTTAATTTTTA
1 TATATTTTTAATTTTTA
*
67739544 TATAATTTTTTATTTTTA
1 TAT-ATTTTTAATTTTTA
67739562 T
1 T
67739563 TTTTATTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
15 5 0.17
16 9 0.30
17 4 0.13
18 12 0.40
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TATATTTTTAATTTTTA
Found at i:67739559 original size:6 final size:6
Alignment explanation
Indices: 67739550--67739577 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
67739540 TTTATATAAT
67739550 TTTTTA TTTTTA TTTTTA TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTT
67739578 GCTATGTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:67739564 original size:24 final size:24
Alignment explanation
Indices: 67739513--67739568 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
67739503 CTTATACTTA
67739513 TATTTTTA-ATATTTTAATATTTT
1 TATTTTTATATATTTTAATATTTT
* *
67739536 AATTTTTATATAATTTT-TTATTTT
1 TATTTTTATAT-ATTTTAATATTTT
67739560 TATTTTTAT
1 TATTTTTAT
67739569 TTTTATTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 7 0.25
24 16 0.57
25 5 0.18
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (24 bp):
TATTTTTATATATTTTAATATTTT
Found at i:67739628 original size:21 final size:20
Alignment explanation
Indices: 67739588--67739628 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
67739578 GCTATGTCTA
* *
67739588 TTTTTTTCTTTTTCTTTCAT
1 TTTTTTTATTTTTCTATCAT
67739608 TTTTTTTATTTTTACTATCAT
1 TTTTTTTATTTTT-CTATCAT
67739629 CATTACAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTTTTATTTTTCTATCAT
Found at i:67739670 original size:18 final size:18
Alignment explanation
Indices: 67739647--67739698 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
67739637 TTACCTTTTA
67739647 AGTTTATTGA-TATTATTG
1 AGTTTATT-ATTATTATTG
67739665 AGTTTATTATTATTATT-
1 AGTTTATTATTATTATTG
*
67739682 ATTATTATT-TTATTATT
1 AGT-TTATTATTATTATT
67739699 ATTTTATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
17 11 0.35
18 20 0.65
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (18 bp):
AGTTTATTATTATTATTG
Found at i:67739674 original size:3 final size:3
Alignment explanation
Indices: 67739668--67739772 Score: 89
Period size: 3 Copynumber: 35.7 Consensus size: 3
67739658 ATTATTGAGT
67739668 TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA TTA TT- TTA TT- TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
67739712 TCT- TTC TTT TTAA TT- TTG TT- TTA GTTGA TTTA TTA TTA TTA TTA
1 T-TA TTA TTA TT-A TTA TTA TTA TTA -TT-A -TTA TTA TTA TTA TTA
67739756 TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
67739773 TCTCTTCAAT
Statistics
Matches: 89, Mismatches: 3, Indels: 20
0.79 0.03 0.18
Matches are distributed among these distances:
2 13 0.15
3 67 0.75
4 6 0.07
5 3 0.03
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:67741631 original size:30 final size:30
Alignment explanation
Indices: 67741584--67741644 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
67741574 GAGTTTTCAG
*
67741584 GATCCATACGGGCAGGCCACACGCCCATGT
1 GATCCATACGGGAAGGCCACACGCCCATGT
67741614 GATCCACT-CGGGAAGGCCACACGCCCATGT
1 GATCCA-TACGGGAAGGCCACACGCCCATGT
67741644 G
1 G
67741645 CCAGCCTATG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.23, C:0.36, G:0.28, T:0.13
Consensus pattern (30 bp):
GATCCATACGGGAAGGCCACACGCCCATGT
Found at i:67753431 original size:40 final size:40
Alignment explanation
Indices: 67753246--67753431 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
67753236 GCTACTCGTT
* * * *
67753246 CAAATACCTTCGGGACATAGCCCGGTTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
67753286 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
67753326 CAAATGCCTTC-GGATCTTAGTCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCA
* * *
67753366 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
67753407 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67753432 CATCATTCGA
Statistics
Matches: 129, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.02
40 115 0.89
41 11 0.09
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:67760982 original size:39 final size:39
Alignment explanation
Indices: 67760928--67761075 Score: 215
Period size: 39 Copynumber: 3.8 Consensus size: 39
67760918 TAGGGCTGTC
* * *
67760928 ACATAAAGTCCGGATATAATTCTCGCATGTTGCCTACAG
1 ACATAAAGTCCGGATATAATTCTCGCATATAGCCTACGG
*
67760967 ACATAAAGTCCGGATATAATTCTCGCATATAGCCTGCGG
1 ACATAAAGTCCGGATATAATTCTCGCATATAGCCTACGG
* *
67761006 ACATGAAGTCCGGATATAATTCTCGCTTATAGCCTACGG
1 ACATAAAGTCCGGATATAATTCTCGCATATAGCCTACGG
* * *
67761045 ACCTGAAGTCCGGATATAATTCTTGCATATA
1 ACATAAAGTCCGGATATAATTCTCGCATATA
67761076 TATATTCACA
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (39 bp):
ACATAAAGTCCGGATATAATTCTCGCATATAGCCTACGG
Found at i:67766172 original size:40 final size:40
Alignment explanation
Indices: 67766115--67766300 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
67766105 TCGAATGATG
* * * *
67766115 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
67766155 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
67766195 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
67766235 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
67766276 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
67766301 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67771026 original size:40 final size:40
Alignment explanation
Indices: 67770982--67771217 Score: 355
Period size: 40 Copynumber: 5.9 Consensus size: 40
67770972 GATATAGCTT
* *
67770982 CTCGCTCAAATGCCTTCGGGACTCAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
67771022 CTCGCACAATTGCCTTCGGGACTTAGCCCAGTTATAATAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * * *
67771062 CACGCACAATTGCCTTCGGGACTTGGCCCGGCTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
67771102 CTCGCACAAATTCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
67771142 CTCGCACAAATGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
67771182 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
67771218 ATCCGAATAT
Statistics
Matches: 176, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 176 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:67771188 original size:120 final size:120
Alignment explanation
Indices: 67770955--67771217 Score: 368
Period size: 120 Copynumber: 2.2 Consensus size: 120
67770945 AAACCAAGTA
** * * *
67770955 CCTTCGGGGTTTAG-CCGGATATAGCT-TCTCGCTCAAATGCCTTCGGGACTCAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTCAGCCCGGATATA
* *
67771018 GTAACTCGCACAATTGCCTTCGGGACTTAGCCCAGTTATAATAACACGCACAATTG
65 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGTTATAATAACACGCACAAATG
* * * *
67771074 CCTTCGGGACTTGGCCCGGCTATAGTAACTCGCACAAATTCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTCAGCCCGGATATAG
* * * *
67771139 TAACTCGCACAAATGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
66 TAACTCGCACAAATGCCTTCGGGACTTAGCCCAGTTATAATAACACGCACAAATG
67771194 CCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATA
67771218 ATCCGAATAT
Statistics
Matches: 125, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
119 12 0.10
120 113 0.90
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (120 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTCAGCCCGGATATAG
TAACTCGCACAAATGCCTTCGGGACTTAGCCCAGTTATAATAACACGCACAAATG
Found at i:67772944 original size:39 final size:39
Alignment explanation
Indices: 67772890--67773037 Score: 215
Period size: 39 Copynumber: 3.8 Consensus size: 39
67772880 TAGGGCTGTC
* * *
67772890 ACATAAAGTCCGGATATAATTCTCGCATGTTGCCTACAG
1 ACATAAAGTCCGGATATAATTCTCGCATATAGCCTACGG
*
67772929 ACATAAAGTCCGGATATAATTCTCGCATATAGCCTGCGG
1 ACATAAAGTCCGGATATAATTCTCGCATATAGCCTACGG
* *
67772968 ACATGAAGTCCGGATATAATTCTCGCTTATAGCCTACGG
1 ACATAAAGTCCGGATATAATTCTCGCATATAGCCTACGG
* * *
67773007 ACCTGAAGTCCGGATATAATTCTTGCATATA
1 ACATAAAGTCCGGATATAATTCTCGCATATA
67773038 TATATTCACA
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 99 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (39 bp):
ACATAAAGTCCGGATATAATTCTCGCATATAGCCTACGG
Found at i:67778136 original size:40 final size:40
Alignment explanation
Indices: 67778079--67778264 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
67778069 TCGAATGATG
* * * *
67778079 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
67778119 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
67778159 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
67778199 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
67778240 -CC-GAGCTATGTCCCGAAGGTATTTG
1 TCCGGA-CTAAGTCCCGAAGGCATTTG
67778265 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
39 2 0.02
40 118 0.91
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67780435 original size:79 final size:80
Alignment explanation
Indices: 67780297--67780555 Score: 402
Period size: 79 Copynumber: 3.3 Consensus size: 80
67780287 ATTCGGATTG
67780297 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CGGGCCAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCA
67780361 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
67780376 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGT-CCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCA
*
67780440 ATTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * **
67780455 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTGAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCA
* *
67780520 TTTGAGCGAG-AAGCT
66 TTTGTGCGAGTTA-CT
*
67780535 ATATCC-GGCTAA-ACCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
67780556 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
78 8 0.05
79 125 0.75
80 34 0.20
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.22
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:67780537 original size:40 final size:40
Alignment explanation
Indices: 67780301--67780529 Score: 381
Period size: 40 Copynumber: 5.8 Consensus size: 40
67780291 GGATTGATAT
67780301 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
67780341 -CGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
67780380 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
67780420 CCGGGCCAAGT-CCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
67780459 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
67780499 CCGGGCTGAGTCCCGAAGGCATTTGAGCGAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
67780530 AAGCTATATC
Statistics
Matches: 177, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 74 0.42
40 103 0.58
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:67780537 original size:119 final size:119
Alignment explanation
Indices: 67780301--67780542 Score: 371
Period size: 119 Copynumber: 2.0 Consensus size: 119
67780291 GGATTGATAT
* * *
67780301 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACGGGCCAAGTCCCGAAGGCATTTGT
1 CCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACGGGCCAAGTCCCGAAGGCAATTGT
* * *
67780366 GCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
66 GCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAACTATAA
*
67780420 CCGGGCCAAGT-CCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCAATTG
1 CCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA-CGGGCCAAGTCCCGAAGGCAATTG
* *
67780484 TGCGAGTTACTATAACCGGGCTGAGTCCCGAAGGCATTTGAGCGAG-AAGCTATAT
65 TGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAA-CTATAA
67780539 CCGG
1 CCGG
67780543 CTAAACCCGA
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
118 28 0.25
119 84 0.75
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (119 bp):
CCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACGGGCCAAGTCCCGAAGGCAATTGT
GCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAACTATAA
Found at i:67782293 original size:2 final size:2
Alignment explanation
Indices: 67782286--67782311 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
67782276 TATGTTAGTG
67782286 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
67782312 CGTAATTTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:67793769 original size:27 final size:28
Alignment explanation
Indices: 67793712--67793781 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
67793702 AAAATTGTAC
**
67793712 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
67793740 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
67793767 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67793782 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:67800958 original size:27 final size:28
Alignment explanation
Indices: 67800901--67800970 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
67800891 AAAATTGTAC
**
67800901 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
67800929 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
67800956 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
67800971 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:67803390 original size:48 final size:48
Alignment explanation
Indices: 67803331--67803601 Score: 264
Period size: 48 Copynumber: 5.6 Consensus size: 48
67803321 TGTGAGTCAA
* *
67803331 TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAG
1 TGTAAGACCATGTTTAGGACATGGCATCGGCCTCGATATGAGAGCCAG
* * *
67803379 TGTAAGACCATGTTT-GGAACATGGCATCGGCATTGATATGAGAGCTAG
1 TGTAAGACCATGTTTAGG-ACATGGCATCGGCCTCGATATGAGAGCCAG
** * * ** *
67803427 TGTAAGACCATGTCCAGGATATGGCATCGACCTTAATATGTGAGCCAG
1 TGTAAGACCATGTTTAGGACATGGCATCGGCCTCGATATGAGAGCCAG
* * ** * *
67803475 TGTAAGAACATGTTTAGAACATGGCATCATCATTC-ATATGAGAGCTAG
1 TGTAAGACCATGTTTAGGACATGGCATCGGC-CTCGATATGAGAGCCAG
*
67803523 TGTAAGACCATGTTT-GGATCATGGCATCCGCACT-GATATATGAGAGCCAG
1 TGTAAGACCATGTTTAGGA-CATGGCATCGGC-CTCG--ATATGAGAGCCAG
*
67803573 AT-TAAGACCATGTCTAGGACATGGCATCG
1 -TGTAAGACCATGTTTAGGACATGGCATCG
67803602 ACATCTTGCC
Statistics
Matches: 183, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
47 4 0.02
48 139 0.76
49 3 0.02
50 33 0.18
51 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTTTAGGACATGGCATCGGCCTCGATATGAGAGCCAG
Found at i:67803495 original size:96 final size:94
Alignment explanation
Indices: 67803331--67803601 Score: 319
Period size: 96 Copynumber: 2.8 Consensus size: 94
67803321 TGTGAGTCAA
* * * *
67803331 TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGTAAGACCATGTTTGG
1 TGTAAGACCATG-TTAGGATATGGCATC-GCCTCAATATGTGAGCCAGTGTAAGACCATGTTTAG
*
67803396 AACATGGCATCGGCATTGATATGAGAGCTAG
64 AACATGGCATCGGCATTCATATGAGAGCTAG
* * *
67803427 TGTAAGACCATGTCCAGGATATGGCATCGACCTTAATATGTGAGCCAGTGTAAGAACATGTTTAG
1 TGTAAGACCATGT-TAGGATATGGCATCG-CCTCAATATGTGAGCCAGTGTAAGACCATGTTTAG
**
67803492 AACATGGCATCATCATTCATATGAGAGCTAG
64 AACATGGCATCGGCATTCATATGAGAGCTAG
* * * *
67803523 TGTAAGACCATGTTTGGATCATGGCATCCGCACTGATATATGAGAGCCAGAT-TAAGACCATGTC
1 TGTAAGACCATGTTAGGAT-ATGGCAT-CGC-CTCA-ATATGTGAGCCAG-TGTAAGACCATGTT
*
67803587 TAGGACATGGCATCG
61 TAGAACATGGCATCG
67803602 ACATCTTGCC
Statistics
Matches: 150, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
95 6 0.04
96 103 0.69
97 5 0.03
98 35 0.23
99 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26
Consensus pattern (94 bp):
TGTAAGACCATGTTAGGATATGGCATCGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTAGAA
CATGGCATCGGCATTCATATGAGAGCTAG
Found at i:67811120 original size:48 final size:49
Alignment explanation
Indices: 67811044--67811181 Score: 172
Period size: 48 Copynumber: 2.8 Consensus size: 49
67811034 CTTCTGGGGT
*
67811044 TATGTGAGCCAGTGTAAGACCATTTTTGGGACATGGCATCAGC-CTCG-A
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCAC-CGAA
* * * *
67811092 TATGTGAGCTAGTGTAAGGCCATGTTTGGAACATGGCATCCGCACCGATA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCACCGA-A
* * *
67811142 TATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
67811182 GGCATCTTAC
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
48 40 0.53
49 1 0.01
50 35 0.46
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (49 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCACCGAA
Found at i:67815501 original size:50 final size:50
Alignment explanation
Indices: 67815419--67815845 Score: 361
Period size: 50 Copynumber: 8.8 Consensus size: 50
67815409 GATAAAATGT
* *
67815419 CGATGCCATGTCCCAGACATGGTCTTAAACTGACTCTCATACATCGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGGTGC
* * * ** *
67815469 CGATGCCATGTCCCAGACATGGTGTTACACTGA-T-ACATATAACAATGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGGTGC
* * * * *
67815517 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATAT-T-GAG-GG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCG-GTGC
* * *
67815565 CGATGCCATGTTCC--ACATGGTCTTACACTG-CT-TGCATATACCGGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCT-CATATATCGGTGC
* * *
67815612 CAATGCCATGTCCCAAACATGGTCTTACACTGA----CATGTATCGAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCG-GTGC
* * *
67815658 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATATATCGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGGTGC
* * * * *
67815708 TGATGCCATGTTCCAGACATTGTCTTACACT-A---ACACATATCGAG-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCG-GTGC
* * * * * *
67815754 CAATGTCATGTCCCAGACATGATCTTACACTGGCTCCCATATACCGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGGTGC
* * *
67815804 CGATGCCATGTCCTAGACGTGGTCTTACACTGGCTCTCATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAT
67815846 TGCCATGGTC
Statistics
Matches: 304, Mismatches: 51, Indels: 44
0.76 0.13 0.11
Matches are distributed among these distances:
45 7 0.02
46 89 0.29
47 16 0.05
48 52 0.17
49 20 0.07
50 120 0.39
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGGTGC
Found at i:67815721 original size:143 final size:144
Alignment explanation
Indices: 67815419--67815847 Score: 376
Period size: 146 Copynumber: 3.0 Consensus size: 144
67815409 GATAAAATGT
* * * *
67815419 CGATGCCATGTCCCAGACATGGTCTTAAACTGACTCTCATACATCGGTGCCGATGCCATGTCCCA
1 CGATGCCATGTTCCA-ACATGGTCTTACACTGACTCTCATACACCGGTGCCAATGCCATGTCCCA
* * *
67815484 GACATGGTGTTACACTGATACATATAACAATGACGATGCCATGTTCCAAACATGGTCTTACACTG
65 AACATGGTCTTACACTGA-ACATATAACAATGACGATGCCATGTCCCAAACATGGTCTTACACTG
*
67815549 GCTCGCATATTGAGGG
129 GCTCCCATATTGAGGG
* *
67815565 CGATGCCATGTTCC-ACATGGTCTTACACTG-CT-TGCATATACCGGTGTCAATGCCATGTCCCA
1 CGATGCCATGTTCCAACATGGTCTTACACTGACTCT-CATACACCGGTGCCAATGCCATGTCCCA
* * * * *
67815627 AACATGGTCTTACACTG-ACATGTATCGA-GGCTGATGCCATGTCCCAGACATGGTCTTACACTG
65 AACATGGTCTTACACTGAACATATAACAATGAC-GATGCCATGTCCCAAACATGGTCTTACACTG
*
67815690 GCTCCCATATATCG-GTG
129 GCTCCCATAT-T-GAGGG
* * * * *
67815707 CTGATGCCATGTTCCAGACATTGTCTTACACT-A-ACACAT--ATCGAG-GCCAATGTCATGTCC
1 C-GATGCCATGTTCCA-ACATGGTCTTACACTGACTCTCATACACCG-GTGCCAATGCCATGTCC
* * ** * ** * * * *
67815767 CAGACATGATCTTACACTGGCTCCCATATACCGGTGCCGATGCCATGTCCTAGACGTGGTCTTAC
63 CAAACATGGTCTTACACT-G--AACATATAACAATGACGATGCCATGTCCCAAACATGGTCTTAC
*
67815832 ACTGGCTCTCATATTG
125 ACTGGCTCCCATATTG
67815848 CCATGGTCCA
Statistics
Matches: 236, Mismatches: 32, Indels: 32
0.79 0.11 0.11
Matches are distributed among these distances:
140 2 0.01
141 46 0.19
142 37 0.16
143 57 0.24
144 19 0.08
145 15 0.06
146 58 0.25
147 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (144 bp):
CGATGCCATGTTCCAACATGGTCTTACACTGACTCTCATACACCGGTGCCAATGCCATGTCCCAA
ACATGGTCTTACACTGAACATATAACAATGACGATGCCATGTCCCAAACATGGTCTTACACTGGC
TCCCATATTGAGGG
Found at i:67815738 original size:96 final size:94
Alignment explanation
Indices: 67815469--67815835 Score: 361
Period size: 96 Copynumber: 3.9 Consensus size: 94
67815459 ACATCGGTGC
* * * * **
67815469 CGATGCCATGTCCCAGACATGGTGTTACACTGAT-ACATATAACAATGAC-GATGCCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGCTCCCATATACCGGTG-CTGATGCCATGTTCCA
* *
67815532 AACATGGTCTTACACTGGC-TCGCATATTGAGGG
65 AACATGGTCTTACACTGACAT-G--TATCGA-GG
* ** * *
67815565 CGATGCCATGTTCC--ACATGGTCTTACACTGCTTGCATATACCGGTG-TCAATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGCTCCCATATACCGGTGCT-GATGCCATGTTCCA
67815627 AACATGGTCTTACACTGACATGTATCGAGG
65 AACATGGTCTTACACTGACATGTATCGAGG
*
67815657 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATATATCGGTGCTGATGCCATGTTCC
1 C-GATGCCATGTCCCAGACATGGTCTTACACT-GCTCCCATATACCGGTGCTGATGCCATGTTCC
* * * **
67815722 AGACATTGTCTTACACTAACACATATCGAGG
64 AAACATGGTCTTACACTGACATGTATCGAGG
* * * *
67815753 CCAATGTCATGTCCCAGACATGATCTTACACTGGCTCCCATATACCGGTGCCGATGCCATG-TCC
1 -CGATGCCATGTCCCAGACATGGTCTTACACT-GCTCCCATATACCGGTGCTGATGCCATGTTCC
* *
67815817 TAGACGTGGTCTTACACTG
64 -AAACATGGTCTTACACTG
67815836 GCTCTCATAT
Statistics
Matches: 230, Mismatches: 30, Indels: 22
0.82 0.11 0.08
Matches are distributed among these distances:
92 3 0.01
93 17 0.07
94 16 0.07
95 58 0.25
96 134 0.58
97 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCTCCCATATACCGGTGCTGATGCCATGTTCCAA
ACATGGTCTTACACTGACATGTATCGAGG
Found at i:67817226 original size:53 final size:53
Alignment explanation
Indices: 67817146--67817352 Score: 184
Period size: 53 Copynumber: 3.8 Consensus size: 53
67817136 TTTTTTTTTA
* *
67817146 AACTTACCATTGTCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * *
67817199 AACTCACCATTGCCATG-CGTTGGCATGGTCTTACATGGGATCTTTGCTTTATAG
1 AACTTACCAATGCCATGTC-TTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
** * * * * *
67817253 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTTCCCTGTA-A
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCT-TATG
* * * *
67817308 AACTTACCAATGCCATGCCTTGGCATAGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
67817353 AAACCCTAAC
Statistics
Matches: 120, Mismatches: 28, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
52 1 0.01
53 46 0.38
54 35 0.29
55 31 0.26
56 5 0.04
57 2 0.02
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:67819831 original size:17 final size:18
Alignment explanation
Indices: 67819802--67819835 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
67819792 TAATCATGCT
67819802 ATAATACATAAAATAATA
1 ATAATACATAAAATAATA
67819820 ATAATA-ATAAAATAAT
1 ATAATACATAAAATAAT
67819836 TTCTTCGACG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (18 bp):
ATAATACATAAAATAATA
Found at i:67821774 original size:8 final size:8
Alignment explanation
Indices: 67821763--67821789 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
67821753 ATCAACCTCT
67821763 TCTTAATC
1 TCTTAATC
67821771 TCTTAATC
1 TCTTAATC
67821779 TCTTAATC
1 TCTTAATC
67821787 TCT
1 TCT
67821790 GATCATATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.26, G:0.00, T:0.52
Consensus pattern (8 bp):
TCTTAATC
Found at i:67824776 original size:50 final size:50
Alignment explanation
Indices: 67824701--67825129 Score: 321
Period size: 50 Copynumber: 8.8 Consensus size: 50
67824691 TAGAATGTCA
* * * *
67824701 ATGCCATGTCCCGGACATGGTCTTACAGTGGCTCTCATACATCGATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGATGCTG
* * *
67824751 ATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATATATCAATACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGATGCTG
* * * * *
67824799 ATGCCATGTTCCAAAACAAGGTCTTACACTGGCTCGCATAT-T-GAGGCTG
1 ATGCCATG-TCCCAGACATGGTCTTACACTGGCTCACATATATCGATGCTG
** * * * * * **
67824848 ATGCCATGTTTCAAACATGGTCTTACACTAGCTCGCATATACCGGTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGATGCTG
* * ** *
67824898 ATGCCATGTCCCAGTCATGGTTTTACACT-G---ACACGTATCGAGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGATGCTG
* * * * *
67824944 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATA-CCAGTACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGA-TGCTG
* ** * **
67824994 ATGCCATGTCCCAGACATGGTCTTACA-T---TGACACGTATCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGATGCTG
* * * * *
67825040 AAGCCATGTCTCAAACATGGTCTTACACTGGCTCCCATATA-CTGGTG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATC-GATGCT-G
* *
67825090 ATGCCATGTCCCAGACATGGTTTTACACTGGCTCATATAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT
67825130 CACTATGTTC
Statistics
Matches: 290, Mismatches: 72, Indels: 34
0.73 0.18 0.09
Matches are distributed among these distances:
46 66 0.23
47 4 0.01
48 48 0.17
49 36 0.12
50 130 0.45
51 6 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATATCGATGCTG
Found at i:67824962 original size:96 final size:96
Alignment explanation
Indices: 67824741--67825119 Score: 411
Period size: 96 Copynumber: 3.9 Consensus size: 96
67824731 GCTCTCATAC
* * * * * *
67824741 ATCGATGCTGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATATATCAATACTGATGCC
1 ATCGAGGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATACCAGTACCGATGCC
* * * * *
67824804 ATGTTCCAAAACAAGGTCTTACACTGGCTCGCAT
66 ATG-TCCCAGACATGGTCTTACACTGACACG--T
* ** * * * *
67824838 ATTGAGGCTGATGCCATGTTTCAAACATGGTCTTACACTAGCTCGCATATACCGGTGCCAATGCC
1 ATCGAGGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATACCAGTACCGATGCC
* *
67824903 ATGTCCCAGTCATGGTTTTACACTGACACGT
66 ATGTCCCAGACATGGTCTTACACTGACACGT
* *
67824934 ATCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATACCAGTACCGATGCC
1 ATCGAGGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATACCAGTACCGATGCC
*
67824999 ATGTCCCAGACATGGTCTTACATTGACACGT
66 ATGTCCCAGACATGGTCTTACACTGACACGT
** * * * * ** **
67825030 ATCGAGGCCAAAGCCATGTCTCAAACATGGTCTTACACTGGCTCCCATATACTGGTGTCGATGCC
1 ATCGAGGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATACCAGTACCGATGCC
*
67825095 ATGTCCCAGACATGGTTTTACACTG
66 ATGTCCCAGACATGGTCTTACACTG
67825120 GCTCATATAT
Statistics
Matches: 236, Mismatches: 44, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
96 163 0.69
97 34 0.14
98 21 0.09
99 18 0.08
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (96 bp):
ATCGAGGCTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATACCAGTACCGATGCC
ATGTCCCAGACATGGTCTTACACTGACACGT
Found at i:67825081 original size:192 final size:192
Alignment explanation
Indices: 67824741--67825119 Score: 510
Period size: 192 Copynumber: 2.0 Consensus size: 192
67824731 GCTCTCATAC
* * *
67824741 ATCGATGCTGATGCCATGTCCCAGACATGGTCTTACACTGACACATATATCAATACTGATGCCAT
1 ATCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTGACACATATACCAATACCGATGCCAT
* * * ** * *
67824806 GTTCCAAAACAAGGTCTTACACTGGCTCGCATATTGAGGCTGATGCCATGTTTCAAACATGGTCT
66 GTTCCAAAACAAGGTCTTACACTGACACG-ATATCGAGGCCAAAGCCATGTCTCAAACATGGTCT
* *
67824871 TACACTAGCTCGCATATACCGGTGCCAATGCCATGTCCCAGTCATGGTTTTACACTGACACGT
130 TACACTAGCTCCCATATACCGGTGCCAATGCCATGTCCCAGACATGGTTTTACACTGACACGT
* * *
67824934 ATCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATACCAGTACCGATGCC
1 ATCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATATACCAATACCGATGCC
* * * *
67824999 ATG-TCCCAGACATGGTCTTACATTGACACG-TATCGAGGCCAAAGCCATGTCTCAAACATGGTC
64 ATGTTCCAAAACAAGGTCTTACACTGACACGATATCGAGGCCAAAGCCATGTCTCAAACATGGTC
* * * *
67825062 TTACACTGGCTCCCATATACTGGTGTCGATGCCATGTCCCAGACATGGTTTTACACTG
129 TTACACTAGCTCCCATATACCGGTGCCAATGCCATGTCCCAGACATGGTTTTACACTG
67825120 GCTCATATAT
Statistics
Matches: 161, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
192 80 0.50
193 38 0.24
194 22 0.14
195 21 0.13
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (192 bp):
ATCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTGACACATATACCAATACCGATGCCAT
GTTCCAAAACAAGGTCTTACACTGACACGATATCGAGGCCAAAGCCATGTCTCAAACATGGTCTT
ACACTAGCTCCCATATACCGGTGCCAATGCCATGTCCCAGACATGGTTTTACACTGACACGT
Found at i:67829722 original size:49 final size:49
Alignment explanation
Indices: 67829665--67829928 Score: 345
Period size: 49 Copynumber: 5.2 Consensus size: 49
67829655 TATGATATAC
* *
67829665 ATATATGTGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTG-
1 ATATATATGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGT
67829713 -TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
67829761 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGA--T-GTG-A--TG-AA---TGTGAAAGTGT
* *
67829820 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
67829869 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
67829918 ATATATATGTG
1 ATATATATGTG
67829929 CTAATGTGAA
Statistics
Matches: 198, Mismatches: 5, Indels: 25
0.87 0.02 0.11
Matches are distributed among these distances:
46 1 0.01
47 43 0.22
49 97 0.49
51 1 0.01
52 5 0.03
53 3 0.02
55 2 0.01
56 5 0.03
57 1 0.01
59 40 0.20
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.31
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:67829802 original size:31 final size:31
Alignment explanation
Indices: 67829767--67829862 Score: 78
Period size: 31 Copynumber: 3.2 Consensus size: 31
67829757 GTGTATGTAT
67829767 ATGTGATAAGGCCTAATGGCCGATGTGGTGA
1 ATGTGATAAGGCCTAATGGCCGATGTGGTGA
* *** *
67829798 ATGTGA-AAGTG--T-GTGAAAG-TGT-ATGTA
1 ATGTGATAAG-GCCTAATGGCCGATGTGGTG-A
67829825 TATGTGATAAGGCCTAATGGCCGATGTGGTGA
1 -ATGTGATAAGGCCTAATGGCCGATGTGGTGA
67829857 ATGTGA
1 ATGTGA
67829863 AAGTGTATGT
Statistics
Matches: 46, Mismatches: 10, Indels: 18
0.62 0.14 0.24
Matches are distributed among these distances:
26 2 0.04
27 4 0.09
28 10 0.22
29 4 0.09
30 4 0.09
31 16 0.35
32 4 0.09
33 2 0.04
ACGTcount: A:0.28, C:0.08, G:0.34, T:0.29
Consensus pattern (31 bp):
ATGTGATAAGGCCTAATGGCCGATGTGGTGA
Found at i:67829831 original size:59 final size:59
Alignment explanation
Indices: 67829750--67829917 Score: 266
Period size: 59 Copynumber: 3.0 Consensus size: 59
67829740 ATGTGATGAA
67829750 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
67829809 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGA--T-GTG---GTG-AA---
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
67829858 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
1 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
67829917 T
1 T
67829918 ATATATATGT
Statistics
Matches: 99, Mismatches: 0, Indels: 20
0.83 0.00 0.17
Matches are distributed among these distances:
49 40 0.40
51 1 0.01
52 5 0.05
53 3 0.03
55 3 0.03
56 5 0.05
57 1 0.01
59 41 0.41
ACGTcount: A:0.29, C:0.07, G:0.33, T:0.31
Consensus pattern (59 bp):
TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
Found at i:67829840 original size:108 final size:106
Alignment explanation
Indices: 67829703--67829917 Score: 403
Period size: 108 Copynumber: 2.0 Consensus size: 106
67829693 ATGTGATGAA
67829703 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
67829768 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
66 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
*
67829809 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTA
1 TGTGAAAGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTA
67829874 TATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
64 TATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
67829917 T
1 T
67829918 ATATATATGT
Statistics
Matches: 106, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
106 12 0.11
108 94 0.89
ACGTcount: A:0.29, C:0.07, G:0.33, T:0.31
Consensus pattern (106 bp):
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTG
Found at i:67833698 original size:8 final size:8
Alignment explanation
Indices: 67833685--67833709 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
67833675 TGATGCTCAT
67833685 TATATGCA
1 TATATGCA
67833693 TATATGCA
1 TATATGCA
67833701 TATATGCA
1 TATATGCA
67833709 T
1 T
67833710 GTGTGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (8 bp):
TATATGCA
Found at i:67835208 original size:24 final size:24
Alignment explanation
Indices: 67835181--67835295 Score: 194
Period size: 24 Copynumber: 4.8 Consensus size: 24
67835171 GCTGGAAATA
*
67835181 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
67835205 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTCAC
*
67835229 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTCAC
*
67835253 TATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTCAC
67835277 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
67835296 ACATAATAAG
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 85 1.00
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.35
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTCAC
Found at i:67835309 original size:72 final size:72
Alignment explanation
Indices: 67835181--67835317 Score: 197
Period size: 72 Copynumber: 1.9 Consensus size: 72
67835171 GCTGGAAATA
* * * *
67835181 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGC
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATACGATATAGCACTATGTGTGC
67835246 GATTTAC
66 GATTTAC
*
67835253 TATGGCACTATGTGTGCGATTCGCTATGGCACTATGTGTGCGA-AC-ATAATAAGCACTATGTGT
1 TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATACGAT-AT-AGCACTATGTGT
67835316 GC
64 GC
67835318 CACATTCGGT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
70 1 0.02
71 3 0.05
72 54 0.93
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (72 bp):
TATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATACGATATAGCACTATGTGTGC
GATTTAC
Found at i:67835317 original size:48 final size:48
Alignment explanation
Indices: 67835181--67835295 Score: 230
Period size: 48 Copynumber: 2.4 Consensus size: 48
67835171 GCTGGAAATA
67835181 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGC
67835229 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGC
1 TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGC
67835277 TATGGCACTATGTGTGCGA
1 TATGGCACTATGTGTGCGA
67835296 ACATAATAAG
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.35
Consensus pattern (48 bp):
TATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCGC
Found at i:67844226 original size:17 final size:18
Alignment explanation
Indices: 67844204--67844238 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
67844194 AATTTGGGCC
67844204 GTGTGGG-CCACACGGGA
1 GTGTGGGCCCACACGGGA
67844221 GTGTGGGCCCACACGGGA
1 GTGTGGGCCCACACGGGA
67844239 AAGCCACATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.17, C:0.26, G:0.46, T:0.11
Consensus pattern (18 bp):
GTGTGGGCCCACACGGGA
Found at i:67855770 original size:20 final size:20
Alignment explanation
Indices: 67855745--67855798 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
67855735 GTATCAACTA
**
67855745 AAAAATATTGATACTTTTAT
1 AAAAATATTGATACTCGTAT
**
67855765 AAAAATATCAATACTCGTAT
1 AAAAATATTGATACTCGTAT
67855785 AAAAATATTGATAC
1 AAAAATATTGATAC
67855799 CACTGGGCTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.35
Consensus pattern (20 bp):
AAAAATATTGATACTCGTAT
Found at i:67861001 original size:81 final size:82
Alignment explanation
Indices: 67860838--67861071 Score: 257
Period size: 81 Copynumber: 2.9 Consensus size: 82
67860828 AGCACTCAAT
* * *
67860838 ATATAATATATTCGGGTTAAAGTCCCGCAGG-TGC-TGGTA-TATATATATCCGGGTTAAAGTCC
1 ATAT-ATATATCCGGGTTAAAGT-CCGCAGGCTTCGTGCTAGTATATATATCCGGGTTAAAGTCC
* * * *
67860900 CGTAAGTTTCGTGCTAGTA
64 CGCAGGCTTCGTACTAGTA
67860919 ATATATATATCCGGGTTAAAGTCTCGCAGGCTTCGTGCTAGTATATATATCC-GGTTAAA-TCCC
1 ATATATATATCCGGGTTAAAGTC-CGCAGGCTTCGTGCTAGTATATATATCCGGGTTAAAGTCCC
*
67860982 GCAGGCTTCGTACTGGTA
65 GCAGGCTTCGTACTAGTA
* * * * *
67861000 ATATATATATCCAGGTTAAA-TCCGGCAGGCTTAGTGCTGGTA-CTATATCCGGGCTTAAAGTCG
1 ATATATATATCCGGGTTAAAGTCC-GCAGGCTTCGTGCTAGTATATATATCCGGG-TTAAAGTCC
67861063 CGCAGGCTT
64 CGCAGGCTT
67861072 TGAGCCAGTG
Statistics
Matches: 132, Mismatches: 13, Indels: 15
0.82 0.08 0.09
Matches are distributed among these distances:
79 9 0.07
80 43 0.33
81 47 0.36
82 22 0.17
83 11 0.08
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (82 bp):
ATATATATATCCGGGTTAAAGTCCGCAGGCTTCGTGCTAGTATATATATCCGGGTTAAAGTCCCG
CAGGCTTCGTACTAGTA
Found at i:67861028 original size:42 final size:43
Alignment explanation
Indices: 67860838--67861071 Score: 221
Period size: 43 Copynumber: 5.8 Consensus size: 43
67860828 AGCACTCAAT
*
67860838 ATATAATATATTCGGGTTAAAGTCCCGCA-G----GTGCTGGT-
1 ATAT-ATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTA
* * * *
67860876 ATATATATATCCGGGTTAAAGTCCCGTAAGTTTCGTGCTAGTA
1 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTA
*
67860919 ATATATATATCCGGGTTAAAGTCTCGCAGGCTTCGTGC---TA
1 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTA
* *
67860959 GTATATATATCC-GGTTAAA-TCCCGCAGGCTTCGTACTGGTA
1 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTA
* * *
67861000 ATATATATATCCAGGTTAAA-TCCGGCAGGCTTAGTGCTGG--
1 ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTA
* *
67861040 -TA-CTATATCCGGGCTTAAAGTCGCGCAGGCTT
1 ATATATATATCCGGG-TTAAAGTCCCGCAGGCTT
67861072 TGAGCCAGTG
Statistics
Matches: 166, Mismatches: 18, Indels: 22
0.81 0.09 0.11
Matches are distributed among these distances:
37 22 0.13
38 29 0.17
39 14 0.08
40 23 0.14
41 13 0.08
42 31 0.19
43 34 0.20
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
ATATATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTA
Found at i:67868720 original size:41 final size:40
Alignment explanation
Indices: 67868663--67868813 Score: 182
Period size: 42 Copynumber: 3.7 Consensus size: 40
67868653 CTCAATATAT
67868663 AATATATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTAA
1 AATATATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTAA
* *
67868704 AATATATCCGGGTTAAATCCCACAGGCTTCATGCTGGTAA
1 AATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* * *
67868744 TATATATATTCGAGTTAAATCCCGCAGGCTTAGTGC-GGT--
1 -A-ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
*
67868783 ACTATATCCGGGCTTAAAGTCCCGCAGGCTT
1 AATATATCCGGG-TTAAA-TCCCGCAGGCTT
67868814 TGAGCCAGTG
Statistics
Matches: 96, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
37 8 0.08
38 6 0.06
39 12 0.12
40 21 0.22
41 21 0.22
42 28 0.29
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (40 bp):
AATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
Found at i:67869901 original size:48 final size:48
Alignment explanation
Indices: 67869813--67870081 Score: 253
Period size: 48 Copynumber: 5.6 Consensus size: 48
67869803 TAAAGTACCA
* * * *
67869813 ATGCCATGTCCTCGACACGGTCTTACA-T-GAATCCACATATCATCGCTG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCAT--ATATATCATCGCTG
*
67869861 ATGCCATGTCCTAGACATGGTCTTACACTGGCATATATATCATC-CTCA
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCATATATATCATCGCT-G
* *
67869909 ATGCCAT-TGCCCAGACATGGTCTTACACTGGCACATATATCATCGCTG
1 ATGCCATGT-CCTAGACATGGTCTTACACTGGCATATATATCATCGCTG
* * ** * * * *
67869957 TTGCCATGTCCAAGACATAATCTTACACTGGCATACATATTATTGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCATATATATCATCGCTG
* * *
67870005 ATGCCATGTCCTAGACATGGTCTTACACAGGCACATATCTCGGAT-G-TCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCATATATATC--ATCGCT-G
* *
67870054 ATACCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCTAGACATGGTCTTACAC
67870082 AGAATTTCAT
Statistics
Matches: 183, Mismatches: 29, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
47 3 0.02
48 143 0.78
49 32 0.17
50 5 0.03
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCTAGACATGGTCTTACACTGGCATATATATCATCGCTG
Found at i:67873931 original size:48 final size:47
Alignment explanation
Indices: 67873875--67873970 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 47
67873865 TCATTGGCAA
*
67873875 AGGATACTTGTTCTTTACTGTCACCTTGTTGAGCTGTCGATAATCTAT
1 AGGATACTTGTTCTTTACTGTCACC-TATTGAGCTGTCGATAATCTAT
67873923 AGGATACTTGTTCTTTACTGTCACCTATTGAGCTGTCGATAATCTAT
1 AGGATACTTGTTCTTTACTGTCACCTATTGAGCTGTCGATAATCTAT
67873970 A
1 A
67873971 CATAGCCTCA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 22 0.47
48 25 0.53
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.41
Consensus pattern (47 bp):
AGGATACTTGTTCTTTACTGTCACCTATTGAGCTGTCGATAATCTAT
Found at i:67879539 original size:40 final size:40
Alignment explanation
Indices: 67879482--67879668 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
67879472 TTCGAATGAT
* ** *
67879482 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGATTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * *
67879523 A-CCGGGCTAAGTCCCGAAGTCATCTGCGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
67879562 ATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
67879602 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* *
67879643 A-CCGGGCTATGTCCCAAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
67879669 AGCAAGTAAT
Statistics
Matches: 127, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
39 2 0.02
40 122 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:67886377 original size:40 final size:40
Alignment explanation
Indices: 67886316--67886501 Score: 170
Period size: 40 Copynumber: 4.7 Consensus size: 40
67886306 TTCGAATGAT
67886316 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGATTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AGCGATTATA
* *
67886357 AT-CGGGCTAAGTCCCAAAGGCA--TCTGC-GCGAGTTACTA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAGCGA-TTA-TA
* *
67886395 ATCCGGGCTAATTCCCGAAGGCATTTGTGC-GAG-TTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAGCGATTA-T-A
* ** * *
67886435 ATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AGCGATTATA
* *
67886476 A-CCGGGCTATGTCCTGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
67886502 AGCAAGTAAT
Statistics
Matches: 121, Mismatches: 15, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
36 4 0.03
37 3 0.02
38 8 0.07
39 23 0.19
40 70 0.58
41 10 0.08
42 2 0.02
43 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCAGCGATTATA
Found at i:67886447 original size:79 final size:80
Alignment explanation
Indices: 67886316--67886501 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 80
67886306 TTCGAATGAT
* * *
67886316 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGATTATAATCGGGCTAAGTCCCAAAGGC-AT
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGCGACTATAATCGGGCTAAGTCCCAAAGGCAAT
67886380 CTGCGCGAGTTA-CTA
66 -TGCGCGAGTTACCTA
** *
67886395 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCAA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGCGACTATAAT-CGGGCTAAGTCCCAAAGGCAA
*
67886459 TTGTGCGAGTTACTCTA
65 TTGCGCGAGTTAC-CTA
*
67886476 A-CCGGGCT-ATGTCCTGAAGGCATTTG
1 ATCCGGGCTAAT-TCCCGAAGGCATTTG
67886502 AGCAAGTAAT
Statistics
Matches: 94, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
78 3 0.03
79 64 0.68
80 23 0.24
81 4 0.04
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGCGACTATAATCGGGCTAAGTCCCAAAGGCAAT
TGCGCGAGTTACCTA
Found at i:67887964 original size:48 final size:48
Alignment explanation
Indices: 67887912--67888159 Score: 159
Period size: 48 Copynumber: 5.2 Consensus size: 48
67887902 CATGTCCCTG
67887912 ACATGGTCTTACA-TGAATCCACATATCATCGCCGATGCCATTATCC-AA
1 ACATGGTCTTACACTG-ATCCACATATCATCGCCGATGCCA-TATCCTAA
* * * * * *
67887960 ACATGGTCTTACACTGGTCCATATATCATCGCTGATGTCATGTCCTAG
1 ACATGGTCTTACACTGATCCACATATCATCGCCGATGCCATATCCTAA
* * * * *
67888008 ACATGGTCTTACACTG-GCACATATATCATCGCTGATGCCATGTCCCAA
1 ACATGGTCTTACACTGATC-CACATATCATCGCCGATGCCATATCCTAA
* * * * * * * *
67888056 TCATGGTCGTACACTG-GCACATATATCATCGTCGTTGCCATGTCCCT-G
1 ACATGGTCTTACACTGATC-CACATATCATCGCCGATGCCATAT-CCTAA
* * * * * *
67888104 ACATGATCTTATAGTGGCAT--ACATATTATCGCCGATGCCATGTCCTAG
1 ACATGGTCTTACACT-G-ATCCACATATCATCGCCGATGCCATATCCTAA
67888152 ACATGGTC
1 ACATGGTC
67888160 AGGCACATAT
Statistics
Matches: 164, Mismatches: 28, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
47 8 0.05
48 151 0.92
49 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (48 bp):
ACATGGTCTTACACTGATCCACATATCATCGCCGATGCCATATCCTAA
Found at i:67888069 original size:96 final size:96
Alignment explanation
Indices: 67887901--67888159 Score: 278
Period size: 96 Copynumber: 2.7 Consensus size: 96
67887891 AGTACCAATT
* * *
67887901 CCATGTCCCTGACATGGTCTTACA-T-GAATCCACATATCATCGCCGATGCCAT-TATCCAAACA
1 CCATGTCCCTGACATGATCTTACACTGGCA--CACATATCATCGCCGATGCCATGT-CCCAAACA
*
67887963 TGGTCTTACACTGGTC-CATATATCATCG-CTGATG
63 TGGTCGTACACTGG-CACATATATCATCGTC-GATG
* * * * *
67887997 TCATGT-CCTAGACATGGTCTTACACTGGCACATATATCATCGCTGATGCCATGTCCCAATCATG
1 CCATGTCCCT-GACATGATCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAAACATG
*
67888061 GTCGTACACTGGCACATATATCATCGTCGTTG
65 GTCGTACACTGGCACATATATCATCGTCGATG
* * * * * *
67888093 CCATGTCCCTGACATGATCTTATAGTGGCATACATATTATCGCCGATGCCATGTCCTAGACATGG
1 CCATGTCCCTGACATGATCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAAACATGG
67888158 TC
66 TC
67888160 AGGCACATAT
Statistics
Matches: 137, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
95 4 0.03
96 125 0.91
97 6 0.04
98 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.30
Consensus pattern (96 bp):
CCATGTCCCTGACATGATCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAAACATGG
TCGTACACTGGCACATATATCATCGTCGATG
Found at i:67894539 original size:39 final size:40
Alignment explanation
Indices: 67894425--67894609 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
67894415 ACGACTCGCT
** * * *
67894425 CAAATGCCTTCGGGACGAAGCCTGG-TTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTTGCA
* * *
67894465 CGAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * *
67894505 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
* * * * *
67894544 CGAATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTT-GCA
67894585 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
67894610 CATCATTCGA
Statistics
Matches: 116, Mismatches: 24, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.02
39 30 0.26
40 74 0.64
41 10 0.09
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTTGCA
Found at i:67894541 original size:79 final size:80
Alignment explanation
Indices: 67894458--67894609 Score: 202
Period size: 79 Copynumber: 1.9 Consensus size: 80
67894448 GGTTATAGTG
* * *
67894458 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAAATGCCTTCGGG-C
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAA-GCCTTCGGGAC
67894520 TTAGCCCGGATTTATTA
64 TTAGCCCGGATTTATTA
* ** *
67894537 ACTCGTACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
67894602 AGCCCGGA
66 AGCCCGGA
67894610 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.05
79 42 0.67
80 18 0.29
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:67902782 original size:29 final size:28
Alignment explanation
Indices: 67902748--67902850 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
67902738 TAATCGATCA
*
67902748 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* * **
67902777 CGCACACATAGTGCCGTATAATTTAAATT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
67902806 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
67902835 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
67902851 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:67910707 original size:29 final size:28
Alignment explanation
Indices: 67910673--67910775 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 28
67910663 TAATCGATCA
*
67910673 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* * **
67910702 CGCACACATAGTGCCGTATAATTTAAATT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
67910731 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
67910760 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
67910776 ATCTTGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Done.