Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 227 of 425
Found at i:69051000 original size:99 final size:101
Alignment explanation
Indices: 69050868--69051059 Score: 255
Period size: 99 Copynumber: 1.9 Consensus size: 101
69050858 TATGTAGCAA
* * * * *
69050868 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTATACATGCGA-CCAA-TTATTC-GGTAC
1 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTTA-TCGGGTAC
*
69050930 ACATAGTAGCCTGCACTTTGTACTACACACGTGACCT
65 ACATAGTAGCCTGCACTTAGTACTACACACGTGACCT
* ** **
69050967 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTTATCAAAGTTATCGGGTATG
1 AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTTATCGGGTACA
69051032 CATAGTAGCCTGCACTTAGTACTACACA
66 CATAGTAGCCTGCACTTAGTACTACACA
69051060 TGCGACCTGG
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
99 40 0.51
100 5 0.06
101 34 0.43
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (101 bp):
AACTATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTTATCGGGTACA
CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
Found at i:69054874 original size:37 final size:37
Alignment explanation
Indices: 69054824--69054894 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
69054814 CGAAGTCTTA
69054824 CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
69054861 CCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 CCCGGACATAATCTCCACACGTAGTCATCGGGTC
69054895 TCACCCGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.23, C:0.34, G:0.23, T:0.21
Consensus pattern (37 bp):
CCCGGACATAATCTCCACACGTAGTCATCGGGTCGTG
Found at i:69054902 original size:37 final size:36
Alignment explanation
Indices: 69054822--69054908 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
69054812 TACGAAGTCT
69054822 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
*
69054858 GTGCCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
69054895 TCACCCGGAACATA
1 T-ACCCGG-ACATA
69054909 TTTCCAAGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
36 1 0.02
37 40 0.87
38 5 0.11
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:69055029 original size:53 final size:53
Alignment explanation
Indices: 69054957--69055085 Score: 194
Period size: 49 Copynumber: 2.5 Consensus size: 53
69054947 ATTCACGTTA
* * * *
69054957 GCCATTCGGCTTTACCACATATATATATATACACTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATATATATATATACACTTTCACATTCATCACATCG
69055010 GCCATTAGGCCTTATCAC----ATATATATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATATATACACTTTCACATTCATCACATCG
69055059 GCCATTAGGCCTTATCACATATATATA
1 GCCATTAGGCCTTATCACATATATATA
69055086 CACTTTCACA
Statistics
Matches: 68, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
49 48 0.71
53 20 0.29
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.33
Consensus pattern (53 bp):
GCCATTAGGCCTTATCACATATATATATATACACTTTCACATTCATCACATCG
Found at i:69055051 original size:49 final size:49
Alignment explanation
Indices: 69054979--69055095 Score: 225
Period size: 49 Copynumber: 2.4 Consensus size: 49
69054969 TACCACATAT
*
69054979 ATATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
69055028 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
69055077 ATATATATACACTTTCACA
1 ATATATATACACTTTCACA
69055096 AATTTTGATA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 67 1.00
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:69060665 original size:72 final size:72
Alignment explanation
Indices: 69060575--69060717 Score: 286
Period size: 72 Copynumber: 2.0 Consensus size: 72
69060565 GCGATGCTAA
69060575 GAAAAAGGGAAAAGAGAGAGGGGGTAAGCATAAAACTTAGTAAGTTGTATGTAACTAATAAACAA
1 GAAAAAGGGAAAAGAGAGAGGGGGTAAGCATAAAACTTAGTAAGTTGTATGTAACTAATAAACAA
69060640 CATAGAC
66 CATAGAC
69060647 GAAAAAGGGAAAAGAGAGAGGGGGTAAGCATAAAACTTAGTAAGTTGTATGTAACTAATAAACAA
1 GAAAAAGGGAAAAGAGAGAGGGGGTAAGCATAAAACTTAGTAAGTTGTATGTAACTAATAAACAA
69060712 CATAGA
66 CATAGA
69060718 TCATAAAATT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.49, C:0.08, G:0.25, T:0.18
Consensus pattern (72 bp):
GAAAAAGGGAAAAGAGAGAGGGGGTAAGCATAAAACTTAGTAAGTTGTATGTAACTAATAAACAA
CATAGAC
Found at i:69064357 original size:49 final size:49
Alignment explanation
Indices: 69064300--69064537 Score: 271
Period size: 49 Copynumber: 4.8 Consensus size: 49
69064290 TAGACAAGGC
* *
69064300 TATCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
69064349 TATCTGGTACATATAGTAGCCTGCACTTAGTACTATAAATGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
* * * * * * *
69064399 CATATGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
*
69064450 TATCGGGTACGA-ATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTAC-ACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * *
69064499 TATCCGGTACACGTCGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
69064538 CGTGACCTCA
Statistics
Matches: 156, Mismatches: 28, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 75 0.48
50 43 0.28
51 36 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:69067735 original size:32 final size:34
Alignment explanation
Indices: 69067699--69067763 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
69067689 TAACAGTGGT
*
69067699 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
69067731 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
69067764 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:69070455 original size:17 final size:18
Alignment explanation
Indices: 69070413--69070461 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
69070403 AGTTGAAAAG
69070413 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
69070432 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
69070449 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
69070462 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:69071350 original size:40 final size:40
Alignment explanation
Indices: 69071284--69071450 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
69071274 AAATTGAATG
* * *
69071284 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
69071323 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
69071363 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
69071403 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
69071443 ATATCCGG
1 ATATCCGG
69071451 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69078461 original size:17 final size:18
Alignment explanation
Indices: 69078419--69078467 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
69078409 AGTTGAAAAG
69078419 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
69078438 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
69078455 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
69078468 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:69079356 original size:40 final size:40
Alignment explanation
Indices: 69079290--69079456 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
69079280 AAATTGAATG
* * *
69079290 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
69079329 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
69079369 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
69079409 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
69079449 ATATCCGG
1 ATATCCGG
69079457 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:69081423 original size:29 final size:29
Alignment explanation
Indices: 69081389--69081549 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
69081379 TACTCGATTT
** * *
69081389 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
69081418 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
69081447 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
69081476 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69081505 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
69081534 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
69081550 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:69087680 original size:27 final size:28
Alignment explanation
Indices: 69087650--69087719 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
69087640 ATAGTGAATC
*
69087650 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
69087677 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
69087705 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69087720 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:69089746 original size:19 final size:19
Alignment explanation
Indices: 69089722--69089760 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
69089712 CCTAATGAGT
69089722 ATATTTTCAATATAAATCA
1 ATATTTTCAATATAAATCA
69089741 ATATTTTCAATATAAATCA
1 ATATTTTCAATATAAATCA
69089760 A
1 A
69089761 CAAGAACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATATTTTCAATATAAATCA
Found at i:69099814 original size:12 final size:12
Alignment explanation
Indices: 69099797--69099828 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
69099787 TAGACACATG
69099797 CCCGTGTGTCTA
1 CCCGTGTGTCTA
69099809 CCCGTGTGTCTA
1 CCCGTGTGTCTA
69099821 CCCGTGTG
1 CCCGTGTG
69099829 GAGAACTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.34, G:0.28, T:0.31
Consensus pattern (12 bp):
CCCGTGTGTCTA
Found at i:69100023 original size:27 final size:27
Alignment explanation
Indices: 69099983--69100036 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
69099973 AGTATACATA
*
69099983 TTTGGGACTTCATAACTTATTAGGTTC
1 TTTGGGACTCCATAACTTATTAGGTTC
69100010 TTTGGGACTCCATAACTTATTAGGTTC
1 TTTGGGACTCCATAACTTATTAGGTTC
69100037 ATTCAAAACA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.43
Consensus pattern (27 bp):
TTTGGGACTCCATAACTTATTAGGTTC
Found at i:69109741 original size:18 final size:18
Alignment explanation
Indices: 69109718--69109754 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
69109708 ATGTTTTATT
*
69109718 TAATGTATTATAATAATA
1 TAATGTAATATAATAATA
69109736 TAATGTAATATAATAATA
1 TAATGTAATATAATAATA
69109754 T
1 T
69109755 TTTATATATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.43
Consensus pattern (18 bp):
TAATGTAATATAATAATA
Found at i:69111598 original size:174 final size:174
Alignment explanation
Indices: 69111308--69111653 Score: 665
Period size: 174 Copynumber: 2.0 Consensus size: 174
69111298 AAATAGTAAT
*
69111308 TGTAAAAAGAAAAAAGTTAAGACCTTTATAGTTATGGAGGAAAAACTAAAAATGGTAAAAAAGAA
1 TGTAAAAAGAAAAAAGTTAAGACCTTTATAGTTATGGAGGAAAAACTAAAAATGGTAAAAAACAA
*
69111373 GAAACTGAAAATAACTTGGAGAAAGAAAATGAATCGACTAGGGTAAAAATGAGATAGAATATAAC
66 GAAACTGAAAATAACTTGGAGAAAGAAAATGAATCGACTAGGGTAAAAATGAGATAGAATATAAA
*
69111438 AGCGATGTGGAGGATAAGACTAGCCTAAAATTATGGTCTGACCC
131 AGCGATGTGGAGGATAAGACTAGCCTAAAATTATGGCCTGACCC
69111482 TGTAAAAAGAAAAAAGTTAAGACCTTTATAGTTATGGAGGAAAAACTAAAAATGGTAAAAAACAA
1 TGTAAAAAGAAAAAAGTTAAGACCTTTATAGTTATGGAGGAAAAACTAAAAATGGTAAAAAACAA
69111547 GAAACTGAAAATAACTTGGAGAAAGAAAATGAATCGACTAGGGTAAAAATGAGATAGAATATAAA
66 GAAACTGAAAATAACTTGGAGAAAGAAAATGAATCGACTAGGGTAAAAATGAGATAGAATATAAA
69111612 AGCGATGTGGAGGATAAGACTAGCCTAAAATTATGGCCTGAC
131 AGCGATGTGGAGGATAAGACTAGCCTAAAATTATGGCCTGAC
69111654 ATGGTAAGGT
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 169 1.00
ACGTcount: A:0.49, C:0.09, G:0.22, T:0.21
Consensus pattern (174 bp):
TGTAAAAAGAAAAAAGTTAAGACCTTTATAGTTATGGAGGAAAAACTAAAAATGGTAAAAAACAA
GAAACTGAAAATAACTTGGAGAAAGAAAATGAATCGACTAGGGTAAAAATGAGATAGAATATAAA
AGCGATGTGGAGGATAAGACTAGCCTAAAATTATGGCCTGACCC
Found at i:69115041 original size:41 final size:41
Alignment explanation
Indices: 69114996--69115113 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
69114986 TGAAAGATAA
69114996 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
69115037 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
69115067 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
69115108 ATGTAG
1 ATGTAG
69115114 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:69115052 original size:71 final size:71
Alignment explanation
Indices: 69114964--69115127 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
69114954 GAGATGTATC
69114964 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69115029 AGGACA
66 AGGACA
69115035 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69115100 AGGACA
66 AGGACA
69115106 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
69115128 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:69122633 original size:70 final size:71
Alignment explanation
Indices: 69122507--69122669 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
69122497 GAGATGTATC
69122507 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69122572 AGGACA
66 AGGACA
69122578 CCATGTAGACAAGAGAGCTACGTGAAAG-TAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
69122642 AGGACA
66 AGGACA
69122648 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
69122670 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 64 0.70
71 28 0.30
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:69132208 original size:17 final size:17
Alignment explanation
Indices: 69132186--69132222 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
69132176 GGCCGTGTGT
*
69132186 CACACACGGGCACTAGA
1 CACACACAGGCACTAGA
69132203 CACACACAGGCACTAGA
1 CACACACAGGCACTAGA
69132220 CAC
1 CAC
69132223 GCCCATGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.38, C:0.38, G:0.19, T:0.05
Consensus pattern (17 bp):
CACACACAGGCACTAGA
Found at i:69133240 original size:29 final size:29
Alignment explanation
Indices: 69133181--69133238 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
69133171 CAAATAGCCG
69133181 AAGCTAGTTAAATCGCACACTCAGTGCCC
1 AAGCTAGTTAAATCGCACACTCAGTGCCC
* *
69133210 AAGCTAGTTTAAATCGTACACTTAGTGCC
1 AAGCTAG-TTAAATCGCACACTCAGTGCC
69133239 AAAACTTTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTCAGTGCCC
Found at i:69136290 original size:22 final size:24
Alignment explanation
Indices: 69136245--69136290 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
69136235 TAATCTTTAA
69136245 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
69136269 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
69136291 AGCATAGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 4 0.19
24 5 0.24
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:69142955 original size:40 final size:40
Alignment explanation
Indices: 69142896--69143082 Score: 167
Period size: 40 Copynumber: 4.7 Consensus size: 40
69142886 CAATTGAATG
* * * *
69142896 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACT
* * * *
69142936 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACT
* ** * ***
69142976 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACT
* * * * ***
69143016 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACT
*
69143056 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
69143083 CGAGCATGTG
Statistics
Matches: 124, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 124 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTAACT
Found at i:69143101 original size:40 final size:40
Alignment explanation
Indices: 69142936--69143103 Score: 180
Period size: 40 Copynumber: 4.2 Consensus size: 40
69142926 GCTGGTAATT
* * *
69142936 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGT-GAC
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGGTC
* * *
69142975 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 -ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTC
* * * *
69143016 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GGTC
* *
69143057 -TATCCGGGCTAAGACCCGAAGGCATTCGAGCATGTGGTC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTC
69143096 ATATCCGG
1 ATATCCGG
69143104 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 6 0.06
40 99 0.93
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTC
Found at i:69143102 original size:80 final size:79
Alignment explanation
Indices: 69142936--69143103 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 79
69142926 GCTGGTAATT
* *
69142936 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGACTA-ATCCGGGCTAAGACCCGAAGGCA
* * *
69143001 TTCGTGCAAGTTGTT
65 TTCGAGCAAGTGGTC
* * * *
69143016 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT-ATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGT-G-ACTAATCCGGGCTAAGACCCGAAGGC
*
69143080 ATTCGAGCATGTGGTC
64 ATTCGAGCAAGTGGTC
69143096 ATATCCGG
1 ATATCCGG
69143104 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
80 72 0.96
81 1 0.01
82 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGACTAATCCGGGCTAAGACCCGAAGGCAT
TCGAGCAAGTGGTC
Found at i:69150817 original size:40 final size:40
Alignment explanation
Indices: 69150758--69151024 Score: 318
Period size: 40 Copynumber: 6.7 Consensus size: 40
69150748 CAATTGAATG
* * * * *
69150758 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCATT
* * * * *
69150798 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCATT
* * **
69150838 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCATT
* *
69150878 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCATT
* * **
69150918 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCATT
* * *
69150958 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGCCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCATT
*
69150998 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
69151025 CGAGCATGTG
Statistics
Matches: 191, Mismatches: 36, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 191 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCATT
Found at i:69151045 original size:80 final size:80
Alignment explanation
Indices: 69150759--69151026 Score: 385
Period size: 80 Copynumber: 3.4 Consensus size: 80
69150749 AATTGAATGA
* * ** * ** * * * *
69150759 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
* * *
69150824 TTGTGCTAGTGACTAC
66 TTGTGCAAGTCA-TTC
69150840 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
69150904 TTGTGCAAGTCATTC
66 TTGTGCAAGTCATTC
69150919 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
*
69150984 TTGTGCAAGCCATTC
66 TTGTGCAAGTCATTC
69150999 TATCCGGGCTAAGACCCGAAGGCATTCG
1 TATCCGGGCTAAGACCCGAAGGCATTCG
69151027 AGCATGTGGT
Statistics
Matches: 171, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
79 2 0.01
80 169 0.99
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCAT
TTGTGCAAGTCATTC
Found at i:69161285 original size:20 final size:21
Alignment explanation
Indices: 69161235--69161274 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
69161225 CTGCACCTAG
69161235 GAAAATTTTAGAAATTTTGCA
1 GAAAATTTTAGAAATTTTGCA
69161256 GAAAAGTTTT-GAAATTTTG
1 GAAAA-TTTTAGAAATTTTG
69161275 TTAAAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.40, C:0.03, G:0.17, T:0.40
Consensus pattern (21 bp):
GAAAATTTTAGAAATTTTGCA
Found at i:69166662 original size:6 final size:6
Alignment explanation
Indices: 69166639--69166754 Score: 67
Period size: 6 Copynumber: 18.8 Consensus size: 6
69166629 TATCAAAACT
* * *
69166639 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * * * *
69166688 AGAATA AGAATT AG-GTGAC AAAATT AGAATC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAATC A-G-AATC
*
69166738 AGAATC AAAATC AGAAT
1 AGAATC AGAATC AGAAT
69166755 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
5 4 0.05
6 68 0.83
7 7 0.09
8 3 0.04
ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:69166689 original size:31 final size:31
Alignment explanation
Indices: 69166651--69166754 Score: 145
Period size: 31 Copynumber: 3.4 Consensus size: 31
69166641 AATCAAAATG
69166651 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
* * * *
69166682 AGAATCAGAATAAGAATTAGGTGACAAAATT
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
* *
69166713 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTGACAGAATC
*
69166744 AAAATCAGAAT
1 AGAATCAGAAT
69166755 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:69167560 original size:27 final size:27
Alignment explanation
Indices: 69167259--69167557 Score: 321
Period size: 27 Copynumber: 11.1 Consensus size: 27
69167249 AACACCCTAG
* * *
69167259 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
69167286 GGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*** * * *
69167313 GGGTAAAATAATAATTTTTTTAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** *
69167340 GGGTAAAACAATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
69167367 GGGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
69167394 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* ** *
69167421 AGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
69167448 GGGTAAAATGGTAATTCTGTAAATTGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* ** *
69167475 GGATAAAACAATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
69167502 GGGTAAAATGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
69167529 GGGTAAAACGGTAATTCTATAAATC-A
1 GGGTAAAACGGTAATTCTGTAAATCGA
69167555 GGG
1 GGG
69167558 GTACATTGGT
Statistics
Matches: 230, Mismatches: 42, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
26 4 0.02
27 226 0.98
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
GGGTAAAACGGTAATTCTGTAAATCGA
Found at i:69167560 original size:54 final size:54
Alignment explanation
Indices: 69167259--69167557 Score: 357
Period size: 54 Copynumber: 5.6 Consensus size: 54
69167249 AACACCCTAG
** *
69167259 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGA
* * * * * * *
69167313 GGGTAAAATAATAATTTTTTTAATCGAGGGTAAAACAATAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGA
* * * *
69167367 GGGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGA
* * * * * * *
69167421 AGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATTGA
1 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGA
* * * *
69167475 GGATAAAACAATAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGA
*
69167529 GGGTAAAACGGTAATTCTATAAATC-AGGG
1 GGGTAAAACAGTAATTCTATAAATCGAGGG
69167558 GTACATTGGT
Statistics
Matches: 211, Mismatches: 34, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
53 4 0.02
54 207 0.98
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (54 bp):
GGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGA
Found at i:69167587 original size:81 final size:81
Alignment explanation
Indices: 69167259--69167557 Score: 413
Period size: 81 Copynumber: 3.7 Consensus size: 81
69167249 AACACCCTAG
* * * *
69167259 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAA
1 GGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAA
* * *
69167324 TAATTTTTTTAATCGA
66 TAATTCTATAAATCGA
** * * **
69167340 GGGTAAAACAATAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTCAATCGAGGGTAAAACGG
1 GGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAA
69167405 TAATTCTATAAATCGA
66 TAATTCTATAAATCGA
* * * *
69167421 AGGTAAAAT-AGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGATAAAACA
1 GGGTAAAATGA-TAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACA
69167485 ATAATTCTATAAATCGA
65 ATAATTCTATAAATCGA
*
69167502 GGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATC-AGGG
1 GGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGG
69167558 GTACATTGGT
Statistics
Matches: 189, Mismatches: 27, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
80 4 0.02
81 184 0.97
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (81 bp):
GGGTAAAATGATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAA
TAATTCTATAAATCGA
Found at i:69167696 original size:81 final size:80
Alignment explanation
Indices: 69167539--69167816 Score: 267
Period size: 81 Copynumber: 3.4 Consensus size: 80
69167529 GGGTAAAACG
* * ** * * *
69167539 GTAATTCTATAAATCAGGGGTACATTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTAC
1 GTAATTTTAAAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTT-TATAATTTTAC
***
69167603 AGGTCA-AGGGTATTTTA
64 AAACCAGA-GGTATTTTA
*
69167620 GTAATTTCAAAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACA
1 GTAATTTTAAAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-ATAATTTTACA
*
69167685 AACCAGAGGTATTTTG
65 AACCAGAGGTATTTTA
* * * *
69167701 GTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTAC
1 GTAATTTTAAAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA-TAATTTTAC
* *
69167765 AAACTAGGGGTA-TTTA
64 AAACCAGAGGTATTTTA
** * *
69167781 GATAATTTTGTAAACCAAGGGTATTTTGGTAATTTT
1 G-TAATTTTAAAAATCAGGGGTATTTTGGTAATTTT
69167817 GTAAACTAAA
Statistics
Matches: 167, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
80 6 0.04
81 155 0.93
82 6 0.04
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (80 bp):
GTAATTTTAAAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTATAATTTTACAA
ACCAGAGGTATTTTA
Found at i:69167822 original size:27 final size:27
Alignment explanation
Indices: 69167563--69167816 Score: 240
Period size: 27 Copynumber: 9.4 Consensus size: 27
69167553 CAGGGGTACA
** *
69167563 TTGGTAATTTTACAAGTCGAGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
*** ***
69167590 TCAATAATTTTACAGGTCAAGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
* * * * *
69167617 TTAGTAATTTCAAAAATCAGGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
* *
69167644 TTGGTAATTTTACAAACTAGGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
*
69167671 TTGATAATTTTACAAACC-AGAGGTATT
1 TTGGTAATTTTACAAACCAAG-GGTATT
* *
69167698 TTGGTAATTTTACAAACTAGGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
* *
69167725 TTGGTAATTTTATAAACAAAGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
* * *
69167752 TTAGTAATTTTACAAACTAGGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
* * **
69167779 TAGATAATTTTGTAAACCAAGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
69167806 TTGGTAATTTT
1 TTGGTAATTTT
69167817 GTAAACTAAA
Statistics
Matches: 186, Mismatches: 39, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
26 1 0.01
27 184 0.99
28 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (27 bp):
TTGGTAATTTTACAAACCAAGGGTATT
Found at i:69167824 original size:54 final size:54
Alignment explanation
Indices: 69167610--69167816 Score: 292
Period size: 54 Copynumber: 3.8 Consensus size: 54
69167600 TACAGGTCAA
* * * *
69167610 GGGTATTTT-AGTAATTTCAAAAATCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGA-TAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
*
69167664 GGGTATTTTGATAATTTTACAAACC-AGAGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGATAATTTTATAAACCAAG-GGTATTTTGGTAATTTTACAAACTAG
* * *
69167718 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGATAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
* *
69167772 GGGTATTTAGATAATTTTGTAAACCAAGGGTATTTTGGTAATTTT
1 GGGTATTTTGATAATTTTATAAACCAAGGGTATTTTGGTAATTTT
69167817 GTAAACTAAA
Statistics
Matches: 137, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
53 1 0.01
54 133 0.97
55 3 0.02
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGATAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
Found at i:69169852 original size:33 final size:33
Alignment explanation
Indices: 69169814--69169880 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
69169804 AGGAAAAGAG
69169814 AAAGTCTCGGATTAGTAGATTTTTCTTGTACGA
1 AAAGTCTCGGATTAGTAGATTTTTCTTGTACGA
69169847 AAAGTCTCGGATTAGTAGATTTTTCTTGTACGA
1 AAAGTCTCGGATTAGTAGATTTTTCTTGTACGA
69169880 A
1 A
69169881 CAATTTTCGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (33 bp):
AAAGTCTCGGATTAGTAGATTTTTCTTGTACGA
Found at i:69175156 original size:43 final size:42
Alignment explanation
Indices: 69175054--69175161 Score: 121
Period size: 41 Copynumber: 2.5 Consensus size: 42
69175044 GGCATCGATT
* *
69175054 TGTGATTTACGTGTAAGACCATGTCTGGGACATCGACATTGTA
1 TGTGA-TTACATGTAAGACCATGTCTAGGACATCGACATTGTA
* * * *
69175097 TTTGATT-CATGTAAGACCCTGTCTAGGACAGT-GGCATCTTTA
1 TGTGATTACATGTAAGACCATGTCTAGGACA-TCGACAT-TGTA
69175139 TGTGATTACATGTAAGACCATGT
1 TGTGATTACATGTAAGACCATGT
69175162 TTGGGACGTT
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
41 24 0.44
42 12 0.22
43 18 0.33
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTCTAGGACATCGACATTGTA
Found at i:69175175 original size:43 final size:43
Alignment explanation
Indices: 69175009--69175176 Score: 155
Period size: 43 Copynumber: 3.9 Consensus size: 43
69174999 AGGATTCCGA
* * ** *
69175009 TATGTGATTGCGTGTAAGACCACATCTGGGACGTTGGCATCGAT
1 TATGTGATTACATGTAAGACCATGTCTGGGACGTTGGCATC-TT
* * * * *
69175053 T-TGTGATTTACGTGTAAGACCATGTCTGGGACATCGACAT-TG
1 TATGTGA-TTACATGTAAGACCATGTCTGGGACGTTGGCATCTT
* * *
69175095 TATTTGATT-CATGTAAGACCCTGTCTAGGACAG-TGGCATCTT
1 TATGTGATTACATGTAAGACCATGTCTGGGAC-GTTGGCATCTT
*
69175137 TATGTGATTACATGTAAGACCATGTTTGGGACGTTGGCAT
1 TATGTGATTACATGTAAGACCATGTCTGGGACGTTGGCAT
69175177 TTTCAAGTTA
Statistics
Matches: 98, Mismatches: 20, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
41 23 0.23
42 13 0.13
43 34 0.35
44 28 0.29
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
TATGTGATTACATGTAAGACCATGTCTGGGACGTTGGCATCTT
Found at i:69180088 original size:37 final size:37
Alignment explanation
Indices: 69180029--69180174 Score: 256
Period size: 37 Copynumber: 3.9 Consensus size: 37
69180019 AGCTCAGATG
* *
69180029 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
69180066 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
69180103 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
69180140 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
69180175 ATATATTTCC
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:69180376 original size:48 final size:48
Alignment explanation
Indices: 69180321--69180661 Score: 628
Period size: 48 Copynumber: 7.1 Consensus size: 48
69180311 ACACATCGCC
*
69180321 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
69180369 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
69180417 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69180465 TACATATTTCACATTATCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69180513 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
69180561 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
69180609 TACATATTTCAAATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
69180657 TACAT
1 TACAT
69180662 CAATTTCCGC
Statistics
Matches: 288, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 288 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:69183856 original size:26 final size:26
Alignment explanation
Indices: 69183826--69183875 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
69183816 TTGATTCACA
*
69183826 CAAAA-TATTAATTATATATATTTTAC
1 CAAAATTATTAA-TATAAATATTTTAC
69183852 CAAAATTATTAATATAAATATTTT
1 CAAAATTATTAATATAAATATTTT
69183876 TAATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (26 bp):
CAAAATTATTAATATAAATATTTTAC
Found at i:69183876 original size:27 final size:26
Alignment explanation
Indices: 69183826--69183877 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
69183816 TTGATTCACA
*
69183826 CAAAATATTAATTATATATATTTTAC
1 CAAAATATTAATTAAATATATTTTAC
69183852 CAAAATTATTAATATAAATAT-TTTTA
1 CAAAA-TATTAAT-TAAATATATTTTA
69183878 ATAATAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 12 0.52
28 6 0.26
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (26 bp):
CAAAATATTAATTAAATATATTTTAC
Found at i:69185748 original size:20 final size:21
Alignment explanation
Indices: 69185716--69185754 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
69185706 CACTAGGATG
69185716 GTTGAGTTCCGAGCTCGTTGA
1 GTTGAGTTCCGAGCTCGTTGA
*
69185737 GTTGAG-TCCGAGTTCGTT
1 GTTGAGTTCCGAGCTCGTT
69185755 TATGGGCGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.13, C:0.18, G:0.33, T:0.36
Consensus pattern (21 bp):
GTTGAGTTCCGAGCTCGTTGA
Found at i:69190201 original size:48 final size:48
Alignment explanation
Indices: 69190047--69190194 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
69190037 ATATATACAC
* * **
69190047 ATCTCATACATATTTCACATTAACCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** *
69190095 GGCTCATACATATTTCACATTAGCCTTTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
69190143 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
69190191 ATCT
1 ATCT
69190195 TGTACATCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:69206760 original size:28 final size:27
Alignment explanation
Indices: 69206697--69206766 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
69206687 ATAGTGAGTC
69206697 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
69206724 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
69206752 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69206767 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:69213970 original size:46 final size:47
Alignment explanation
Indices: 69213778--69213996 Score: 161
Period size: 46 Copynumber: 4.7 Consensus size: 47
69213768 TTATTGTGGG
* * * * * *
69213778 CTAGTGTAAGACATGTCTGGGACATACATCGACTA-CATTATGAGAGC
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGT-TGATAGT
69213825 CT-GTGTAAGACCATGTCTGGGACATGGCATCGGC-ATCGA---GACTAGCT
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAT-GAGTTGA-TAG-T
* * * * * *
69213872 CTAATGTGACACATGTCCGGGACATGCATCGGCCT-CGAGATG-TAAG-
1 CTAGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGTTGAT-AGT
69213918 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGTTGATAGT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGTTGATAGT
*
69213965 C-AGTGTAAGACCATGTCTGGGATATGGCATCG
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
69213997 ACATCCTACC
Statistics
Matches: 137, Mismatches: 17, Indels: 35
0.72 0.09 0.19
Matches are distributed among these distances:
45 4 0.03
46 63 0.46
47 49 0.36
48 19 0.14
49 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (47 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGTTGATAGT
Found at i:69217494 original size:2 final size:2
Alignment explanation
Indices: 69217487--69217516 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
69217477 GCCCTTGCAC
69217487 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69217517 GTTTGCACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69218328 original size:40 final size:40
Alignment explanation
Indices: 69218231--69218376 Score: 154
Period size: 40 Copynumber: 3.6 Consensus size: 40
69218221 TCGAATGATG
* * * *
69218231 TCCGGGCTAAGTCCCGAAGGC-TTTGTACTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
69218271 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69218311 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
69218352 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69218377 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 79 0.89
41 9 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69218390 original size:40 final size:40
Alignment explanation
Indices: 69218232--69218395 Score: 122
Period size: 40 Copynumber: 4.1 Consensus size: 40
69218222 CGAATGATGT
* * *
69218232 CCGGGCTAAGTCCCGAAGGC-TTTGTACTAAG-TGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGCT-ACTATAA
* * ** *
69218272 CTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* **
69218311 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
* * *
69218352 CCGGGCTATGTCCCGAAGGTATTTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTA-CTATAA
69218392 CCGG
1 CCGG
69218396 TTAAACTCCG
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
39 4 0.04
40 88 0.86
41 10 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
Found at i:69226287 original size:40 final size:40
Alignment explanation
Indices: 69226230--69226414 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
69226220 TCGAATGATG
* * * *
69226230 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
69226270 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
69226310 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
69226350 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
69226391 -CCGGGCTATGT-CCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
69226415 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
39 13 0.10
40 108 0.82
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69227910 original size:40 final size:40
Alignment explanation
Indices: 69227865--69228032 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
69227855 CGGAATATAA
69227865 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69227905 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69227945 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
69227985 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
69228025 CCGGATAT
1 CCGGATAT
69228033 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69228015 original size:80 final size:80
Alignment explanation
Indices: 69227881--69228030 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
69227871 ATAATCACGT
*
69227881 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
69227945 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
69227961 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
69228024 CCCGGAT
64 CCCGGAT
69228031 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:69235906 original size:40 final size:40
Alignment explanation
Indices: 69235861--69236028 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
69235851 CGGAATATAA
69235861 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69235901 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
69235941 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
69235981 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
69236021 CCGGATAT
1 CCGGATAT
69236029 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:69236011 original size:80 final size:80
Alignment explanation
Indices: 69235877--69236026 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
69235867 ATAATCACGT
*
69235877 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
69235941 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
69235957 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
69236020 CCCGGAT
64 CCCGGAT
69236027 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:69241753 original size:40 final size:40
Alignment explanation
Indices: 69241705--69241910 Score: 342
Period size: 40 Copynumber: 5.2 Consensus size: 40
69241695 GGACTAAGAT
* *
69241705 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
69241745 TCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
69241785 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
69241825 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
69241865 CCGAAGGCATTTGTACGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
69241904 CCGAAGG
1 CCGAAGG
69241911 TACTTGGGTT
Statistics
Matches: 159, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
39 15 0.09
40 144 0.91
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:69243566 original size:29 final size:29
Alignment explanation
Indices: 69243544--69243679 Score: 229
Period size: 29 Copynumber: 4.7 Consensus size: 29
69243534 TATGAATCTA
*
69243544 ATTTGGGCCTAATGGGCCATATGAATGTG
1 ATTTGGGCCTAATGGGCCATACGAATGTG
69243573 ATTTGGGCCTAATGGGCCATACGAATGTG
1 ATTTGGGCCTAATGGGCCATACGAATGTG
69243602 ATTTGGGCCTAATGGGCCATACGAATGTG
1 ATTTGGGCCTAATGGGCCATACGAATGTG
* *
69243631 ATTTGGGCCTAATGGGCGATACGAATGAG
1 ATTTGGGCCTAATGGGCCATACGAATGTG
*
69243660 ATTT-GGCCTAGTGGGCCATA
1 ATTTGGGCCTAATGGGCCATA
69243680 TGCATGTATG
Statistics
Matches: 102, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
28 14 0.14
29 88 0.86
ACGTcount: A:0.24, C:0.16, G:0.32, T:0.28
Consensus pattern (29 bp):
ATTTGGGCCTAATGGGCCATACGAATGTG
Found at i:69248033 original size:46 final size:46
Alignment explanation
Indices: 69247974--69248240 Score: 235
Period size: 46 Copynumber: 5.8 Consensus size: 46
69247964 TGTAACCCGC
* * *
69247974 CCATAAGCAAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
69248020 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
69248070 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * *
69248113 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
69248163 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
69248206 CCATATGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
69248241 ATGCTCAACC
Statistics
Matches: 177, Mismatches: 26, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
42 3 0.02
43 6 0.03
44 4 0.02
45 3 0.02
46 86 0.49
47 55 0.31
48 5 0.03
49 4 0.02
50 6 0.03
51 5 0.03
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:69248092 original size:47 final size:47
Alignment explanation
Indices: 69248028--69248196 Score: 231
Period size: 47 Copynumber: 3.6 Consensus size: 47
69248018 ATCCATAAGT
69248028 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
69248075 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
*
69248121 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
69248168 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
69248197 CATCCGCATC
Statistics
Matches: 105, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 28 0.27
47 57 0.54
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69248110 original size:93 final size:93
Alignment explanation
Indices: 69247983--69248244 Score: 454
Period size: 93 Copynumber: 2.8 Consensus size: 93
69247973 CCCATAAGCA
* * * *
69247983 AACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
69248048 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
*
69248076 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
69248141 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
* *
69248169 AACTCGGACTCAACTCAACGAGTTCGGACATCCGCATCCATATGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
69248234 GAGTTC-GATGC
66 GAGTTCGGATGC
69248245 TCAACCATCC
Statistics
Matches: 161, Mismatches: 8, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
92 5 0.03
93 156 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Found at i:69253224 original size:40 final size:40
Alignment explanation
Indices: 69253158--69253308 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
69253148 AAATTGAATG
* *
69253158 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
69253197 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
*
69253237 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
69253277 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
69253309 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:69253291 original size:80 final size:79
Alignment explanation
Indices: 69253158--69253308 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
69253148 AAATTGAATG
*
69253158 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
69253223 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * *
69253237 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
*
69253300 CATTTGTGC
63 CAATTGTGC
69253309 ACATGGTTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 18 0.29
80 45 0.71
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:69258893 original size:46 final size:46
Alignment explanation
Indices: 69258826--69259003 Score: 211
Period size: 46 Copynumber: 3.8 Consensus size: 46
69258816 TGTAACCCGC
*
69258826 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGATGTTCGCAT
* **
69258872 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG--T--TCGCAT
* **
69258922 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
*
69258965 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG
69259004 CTCAACCATC
Statistics
Matches: 110, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
45 5 0.05
46 63 0.57
47 29 0.26
48 3 0.03
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:69258946 original size:93 final size:93
Alignment explanation
Indices: 69258833--69259004 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
69258823 CGCCCATAAG
**
69258833 CGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
69258897 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
69258926 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69258991 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69259005 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69264915 original size:28 final size:29
Alignment explanation
Indices: 69264865--69264922 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
69264855 GCATGTATAC
* *
69264865 GAATGTGATTTGGGCCAAATGGGTCATAT
1 GAATGAGATTTGGGCCAAATGGGCCATAT
* *
69264894 GAATGAGA-TTGGGCCTAGTGGGCCATAT
1 GAATGAGATTTGGGCCAAATGGGCCATAT
69264922 G
1 G
69264923 CATGCATGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 18 0.72
29 7 0.28
ACGTcount: A:0.26, C:0.12, G:0.34, T:0.28
Consensus pattern (29 bp):
GAATGAGATTTGGGCCAAATGGGCCATAT
Found at i:69272841 original size:90 final size:90
Alignment explanation
Indices: 69272695--69272867 Score: 301
Period size: 90 Copynumber: 1.9 Consensus size: 90
69272685 AGTATGTGCA
69272695 GTTGTGTGGCCACTTTTCAGTCCCTCACAGCATCGATCTGCCCAAGTTCAGGGATTACCTGTACA
1 GTTGTGTGGCCACTTTTCAGTCCCTCACAGCATCGATCTGCCCAAGTTCAGGGATTACCTGTACA
69272760 AAGAAATAGATGGGTGAGATGTGTG
66 AAGAAATAGATGGGTGAGATGTGTG
* * * * *
69272785 GTTGTGTGGCCACTTTTGAGTCCCTCGCAGCATCGATTTGCCTAAGTTCGGGGATTACCTGTACA
1 GTTGTGTGGCCACTTTTCAGTCCCTCACAGCATCGATCTGCCCAAGTTCAGGGATTACCTGTACA
69272850 AAGAAATAGATGGGTGAG
66 AAGAAATAGATGGGTGAG
69272868 TTATGAAAAT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 78 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (90 bp):
GTTGTGTGGCCACTTTTCAGTCCCTCACAGCATCGATCTGCCCAAGTTCAGGGATTACCTGTACA
AAGAAATAGATGGGTGAGATGTGTG
Found at i:69273281 original size:18 final size:18
Alignment explanation
Indices: 69273233--69273273 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
69273223 CCATGAACAC
* *
69273233 ATCATG-CATCATGTCAT
1 ATCATGTCATAATATCAT
69273250 ATCATGTCATAATATCAT
1 ATCATGTCATAATATCAT
69273268 A-CATGT
1 ATCATGT
69273274 ACTTAATACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.37
Consensus pattern (18 bp):
ATCATGTCATAATATCAT
Found at i:69273347 original size:27 final size:27
Alignment explanation
Indices: 69273315--69273367 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
69273305 TAGTCATACA
*
69273315 TCACATAAG-GGCATAATAGTCTTTTTG
1 TCACAT-AGCGGCATAATAGTCATTTTG
69273342 TCACATAGCGGCATAATAGTCATTTT
1 TCACATAGCGGCATAATAGTCATTTT
69273368 ATCAATTAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (27 bp):
TCACATAGCGGCATAATAGTCATTTTG
Found at i:69276344 original size:18 final size:19
Alignment explanation
Indices: 69276321--69276357 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
69276311 TCTTGTCATG
69276321 CTAGTGAAGAGAAA-AAAA
1 CTAGTGAAGAGAAAGAAAA
*
69276339 CTAGTGTAGAGAAAGAAAA
1 CTAGTGAAGAGAAAGAAAA
69276358 TAAGGGTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.57, C:0.05, G:0.24, T:0.14
Consensus pattern (19 bp):
CTAGTGAAGAGAAAGAAAA
Found at i:69278976 original size:39 final size:39
Alignment explanation
Indices: 69278858--69279040 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
69278848 TCGTTCAAAC
* * ** * **
69278858 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
69278898 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
69278938 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
69278977 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
69279016 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
69279041 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:69286860 original size:39 final size:39
Alignment explanation
Indices: 69286742--69286924 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
69286732 TCGTTCAAAC
* * ** * **
69286742 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
69286782 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
69286822 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
69286861 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
69286900 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
69286925 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:69294273 original size:39 final size:39
Alignment explanation
Indices: 69294155--69294337 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
69294145 TCGTTCAAAC
* * ** * **
69294155 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
69294195 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
69294235 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
69294274 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
69294313 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
69294338 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:69302174 original size:39 final size:39
Alignment explanation
Indices: 69302056--69302238 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
69302046 TCGTTCAAAC
* * ** * **
69302056 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
69302096 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
69302136 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
69302175 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
69302214 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
69302239 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:69306151 original size:25 final size:25
Alignment explanation
Indices: 69306112--69306230 Score: 121
Period size: 25 Copynumber: 4.8 Consensus size: 25
69306102 TCCTGTACAT
* * *
69306112 GTATACTCATACGAGTTGTAAATCG
1 GTATGCTCACACGAGCTGTAAATCG
* * * * *
69306137 ATATGCTAACTCGAGCTGTAGATCT
1 GTATGCTCACACGAGCTGTAAATCG
* *
69306162 GTATGCTCTCACGAGCTATAAATCG
1 GTATGCTCACACGAGCTGTAAATCG
*
69306187 GTATGCTCACACGAGTTGTAAATCG
1 GTATGCTCACACGAGCTGTAAATCG
* *
69306212 GTATGCTCTCATGAGCTGT
1 GTATGCTCACACGAGCTGT
69306231 GGGTCAAAAT
Statistics
Matches: 73, Mismatches: 21, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 73 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAAATCG
Found at i:69306184 original size:50 final size:50
Alignment explanation
Indices: 69306130--69306228 Score: 135
Period size: 50 Copynumber: 2.0 Consensus size: 50
69306120 ATACGAGTTG
* * *
69306130 TAAATCGATATGCTAACTCGAGCTGTAGATCTGTATGCTCTCACGAGCTA
1 TAAATCGATATGCTAACACGAGCTGTAAATCGGTATGCTCTCACGAGCTA
* * * *
69306180 TAAATCGGTATGCTCACACGAGTTGTAAATCGGTATGCTCTCATGAGCT
1 TAAATCGATATGCTAACACGAGCTGTAAATCGGTATGCTCTCACGAGCT
69306229 GTGGGTCAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (50 bp):
TAAATCGATATGCTAACACGAGCTGTAAATCGGTATGCTCTCACGAGCTA
Found at i:69309697 original size:3 final size:3
Alignment explanation
Indices: 69309691--69309719 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
69309681 AATAGAATGC
69309691 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
69309720 TTACGTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:69310364 original size:42 final size:42
Alignment explanation
Indices: 69310304--69310516 Score: 311
Period size: 42 Copynumber: 5.1 Consensus size: 42
69310294 CTTCATATAC
*
69310304 AATGCAAGGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
69310346 AATGCAATG-AAAGATAAATGGATCTCCATACCTGGGCCTCTA
1 AATGCAATGAAAAG-TAAATGGACCTCCACACCTGGGCCTCTA
* *
69310388 AATGCAATGAAAAGTAAATCGATCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
69310430 AATGCAATGAAAGGTAAATCGACCTCCACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
69310472 AATACAATGAAAAGTAAATGAACCTCCACACCTCGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
69310514 AAT
1 AAT
69310517 ATAATGAATG
Statistics
Matches: 156, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
41 4 0.03
42 148 0.95
43 4 0.03
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (42 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
Found at i:69313671 original size:37 final size:37
Alignment explanation
Indices: 69313612--69313720 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
69313602 AGCTCAGACG
* *
69313612 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
69313649 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
69313686 TAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
69313721 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:69313935 original size:47 final size:47
Alignment explanation
Indices: 69313883--69314162 Score: 434
Period size: 47 Copynumber: 6.0 Consensus size: 47
69313873 TTTCACACTA
* * * *
69313883 GCCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
69313930 GCCATTCGGCCTTATCACACATATGCATGCTCACGTTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
69313977 GCCATTTGGCCTTATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
69314024 GCCATTCGACCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
69314071 GCCATTCAGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
69314118 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
69314163 AAAATCCTAA
Statistics
Matches: 212, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 212 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:69314087 original size:22 final size:22
Alignment explanation
Indices: 69314062--69314137 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
69314052 GTTCACATTC
69314062 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCCATTCAGCCTT
* *
69314084 ATCACATATATG-CATGTTCA-CATT
1 ATCACAT-T-GGCCA--TTCAGCCTT
*
69314108 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
69314131 ATCACAT
1 ATCACAT
69314138 ATATACACAT
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 17 0.40
23 7 0.17
24 7 0.17
25 11 0.26
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:69314159 original size:25 final size:25
Alignment explanation
Indices: 69313990--69314163 Score: 111
Period size: 25 Copynumber: 7.3 Consensus size: 25
69313980 ATTTGGCCTT
**
69313990 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* *
69314015 ATCAC--ATAGGC-CATTCGACCTT-
1 ATCACATATATGCACATTC-ACATTC
**
69314037 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* *
69314062 ATCACAT-T-GGC-CATTCAGCCTT-
1 ATCACATATATGCACATTCA-CATTC
**
69314084 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
69314109 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
*
69314131 ATCACATATATACACATTCACATTC
1 ATCACATATATGCACATTCACATTC
69314156 ATCACATA
1 ATCACATA
69314164 AAATCCTAAA
Statistics
Matches: 109, Mismatches: 25, Indels: 30
0.66 0.15 0.18
Matches are distributed among these distances:
22 29 0.27
23 21 0.19
24 20 0.18
25 39 0.36
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:69318604 original size:40 final size:40
Alignment explanation
Indices: 69318572--69319163 Score: 923
Period size: 40 Copynumber: 14.8 Consensus size: 40
69318562 CCAGCATGAT
* * * *
69318572 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** ** *
69318612 TGCTCTTCGGGGTTTAGAACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
69318652 TGCTCTTCGGAACTTAGCCCGAATACATTACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
69318692 TGCTCTTCGGAACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
69318732 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
69318772 TGCTCTTCGGGACTTAGCCCGGATACATCACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
69318812 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** *
69318852 TGCTCTTCGTAACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
69318892 TGCTCTTCGGGACTTAGCCCGGATACAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
69318932 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
69318972 TGCTCTTCGGAACTTAGCCCGGATACGTCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
69319012 TGCTCTTCGAGACTTAGCCCGGATACAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
69319052 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
69319092 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
69319132 TGCTCTTCGGGACTTAGCCCGGGTATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
69319164 CTCAATTATC
Statistics
Matches: 506, Mismatches: 46, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 506 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:69318674 original size:23 final size:23
Alignment explanation
Indices: 69318643--69318709 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
69318633 GATATATCAC
69318643 TAGCACGAATGCTCTTCGGAACT
1 TAGCACGAATGCTCTTCGGAACT
* * *
69318666 TAGCCCGAATAC-ATT----AC-
1 TAGCACGAATGCTCTTCGGAACT
69318683 TAGCACGAATGCTCTTCGGAACT
1 TAGCACGAATGCTCTTCGGAACT
69318706 TAGC
1 TAGC
69318710 CCGGATACGT
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
17 10 0.31
18 4 0.12
22 4 0.12
23 14 0.44
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGAACT
Found at i:69320490 original size:37 final size:37
Alignment explanation
Indices: 69320431--69320539 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
69320421 AGCTCAGACG
* *
69320431 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
69320468 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
69320505 TAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
69320540 ATATATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:69322019 original size:71 final size:71
Alignment explanation
Indices: 69321935--69322098 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
69321925 CGATTTGTCT
69321935 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69322000 CTTTCA
66 CTTTCA
69322006 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69322071 CTTTCA
66 CTTTCA
69322077 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
69322099 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:69322136 original size:71 final size:70
Alignment explanation
Indices: 69321935--69322132 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
69321925 CGATTTGTCT
* * * *
69321935 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69322000 CTTTCA
65 CTTTCA
* * * *
69322006 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69322071 CTTTCA
65 CTTTCA
* *
69322077 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
69322133 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:69323538 original size:47 final size:47
Alignment explanation
Indices: 69323486--69323765 Score: 443
Period size: 47 Copynumber: 6.0 Consensus size: 47
69323476 TTTCACACTA
* * * * *
69323486 GCCATTTGGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * * *
69323533 GCCATTCGGCCTTATCACACATATGCATGCTCACGTTCATCACAATG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
69323580 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
69323627 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
69323674 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* **
69323721 GCCATTCGGCCTTATCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
69323766 AAAATCCTAA
Statistics
Matches: 215, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 215 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:69323693 original size:22 final size:22
Alignment explanation
Indices: 69323665--69323740 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
69323655 GTTCACATTC
69323665 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
69323687 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
69323711 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
69323734 ATCACAT
1 ATCACAT
69323741 ATATACACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:69327516 original size:159 final size:159
Alignment explanation
Indices: 69327227--69327547 Score: 399
Period size: 159 Copynumber: 2.0 Consensus size: 159
69327217 GGCCCACATA
* *
69327227 GCCCAAATTGGCCCTAGTCGTGTGGATCACATGGCTTGGCCCAAAAATCCCACACACCCATGTGG
1 GCCCAAATTGGCCCTAGCCGTGTGGATCACACGGCTTGGCCCAAAAATCCCACACACCCATGTGG
* * * * * *
69327292 ACAACCTGTGTGGGCCCACATGGCACAATTCAGTCCAGCTCGTATGTCGCACATGGCCTGCCTCG
66 ACAACCCGTATGGGCCCACACGGCACAATTCAATCCAGCTCATATGTCGCACACGGCCTGCCTCG
69327357 TCAACCACACGCCCGCGTTACGTCACACG
131 TCAACCACACGCCCGCGTTACGTCACACG
* * * * * ***
69327386 GCCCAAATTGGCCTTGGCCGTGTGGATCACACGGCTTGGGCCAAAAGTCCCACACGCTTGTGTGG
1 GCCCAAATTGGCCCTAGCCGTGTGGATCACACGGCTTGGCCCAAAAATCCCACACACCCATGTGG
* * * ** * *
69327451 ACTACCCGTATGTGCCCACACGGCCCAATTCAATCTGGTTCATGTGTCGCACACGGCCTGCCTCG
66 ACAACCCGTATGGGCCCACACGGCACAATTCAATCCAGCTCATATGTCGCACACGGCCTGCCTCG
* * * *
69327516 TCGACTACACGCCCGTGTTACGTCATACG
131 TCAACCACACGCCCGCGTTACGTCACACG
69327545 GCC
1 GCC
69327548 TACCACATGG
Statistics
Matches: 135, Mismatches: 27, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
159 135 1.00
ACGTcount: A:0.21, C:0.35, G:0.24, T:0.21
Consensus pattern (159 bp):
GCCCAAATTGGCCCTAGCCGTGTGGATCACACGGCTTGGCCCAAAAATCCCACACACCCATGTGG
ACAACCCGTATGGGCCCACACGGCACAATTCAATCCAGCTCATATGTCGCACACGGCCTGCCTCG
TCAACCACACGCCCGCGTTACGTCACACG
Found at i:69331598 original size:29 final size:28
Alignment explanation
Indices: 69331565--69331696 Score: 138
Period size: 29 Copynumber: 4.6 Consensus size: 28
69331555 GTGACGAGAT
69331565 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCT-GAAATATA
*
69331594 TGGCACTAAGTGTGCATGCTAGAAATATA
1 TGGCACTAAGTGTGCGTGCT-GAAATATA
* ***
69331623 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCT-GAAATATA
* * * **
69331652 TGGCACTATGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGAAAT-ATA
69331681 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69331697 AAATCGAGTA
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 2 0.02
29 85 0.98
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGTGCTGAAATATA
Found at i:69334116 original size:15 final size:16
Alignment explanation
Indices: 69334086--69334116 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69334076 TCACACTTGT
69334086 TCCAACACCACCTCAA
1 TCCAACACCACCTCAA
69334102 TCCAACACC-CCTCAA
1 TCCAACACCACCTCAA
69334117 CAGACACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.35, C:0.52, G:0.00, T:0.13
Consensus pattern (16 bp):
TCCAACACCACCTCAA
Found at i:69340226 original size:4 final size:4
Alignment explanation
Indices: 69340217--69340247 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
69340207 TTTGAACTTC
69340217 AATT AATT AATT AATT AATT AATT -ATT AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT
69340248 TGAAAAACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
AATT
Found at i:69349109 original size:42 final size:42
Alignment explanation
Indices: 69348980--69349100 Score: 233
Period size: 42 Copynumber: 2.9 Consensus size: 42
69348970 TAGGGTTACC
*
69348980 GAGACTATGTGTAAGACCATATCTGGGATATGGCATCATTAT
1 GAGACTTTGTGTAAGACCATATCTGGGATATGGCATCATTAT
69349022 GAGACTTTGTGTAAGACCATATCTGGGATATGGCATCATTAT
1 GAGACTTTGTGTAAGACCATATCTGGGATATGGCATCATTAT
69349064 GAGACTTTGTGTAAGACCATATCTGGGATATGGCATC
1 GAGACTTTGTGTAAGACCATATCTGGGATATGGCATC
69349101 GATGTGAGAT
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 78 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (42 bp):
GAGACTTTGTGTAAGACCATATCTGGGATATGGCATCATTAT
Found at i:69349122 original size:42 final size:42
Alignment explanation
Indices: 69348980--69349184 Score: 220
Period size: 42 Copynumber: 4.9 Consensus size: 42
69348970 TAGGGTTACC
* *
69348980 GAGACTATGTGTAAGACCATATCTGGGATATGGCATCATTAT
1 GAGACTTTATGTAAGACCATATCTGGGATATGGCATCATTAT
*
69349022 GAGACTTTGTGTAAGACCATATCTGGGATATGGCATCATTAT
1 GAGACTTTATGTAAGACCATATCTGGGATATGGCATCATTAT
* *
69349064 GAGACTTTGTGTAAGACCATATCTGGGATATGGCATCGA-TGT
1 GAGACTTTATGTAAGACCATATCTGGGATATGGCATC-ATTAT
* * * * *
69349106 GAGA-TTTCATGAAAGACCATAGCTAGGCTATTGGAATCGA-TAT
1 GAGACTTT-ATGTAAGACCATATCTGGGATA-TGGCATC-ATTAT
** *
69349149 GAGA-TCCCATGTAAGACCATATCTGGGAAATGGCAT
1 GAGACT-TTATGTAAGACCATATCTGGGATATGGCAT
69349185 TGGTGTAGTA
Statistics
Matches: 142, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
41 3 0.02
42 106 0.75
43 33 0.23
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (42 bp):
GAGACTTTATGTAAGACCATATCTGGGATATGGCATCATTAT
Found at i:69349152 original size:43 final size:42
Alignment explanation
Indices: 69349076--69349169 Score: 107
Period size: 43 Copynumber: 2.2 Consensus size: 42
69349066 GACTTTGTGT
* * * * **
69349076 AAGACCATATCTGGGATATGGCATCGATGTGAGATTTCATGA
1 AAGACCATAGCTAGGATATGGAATCGATATGAGATCCCATGA
* *
69349118 AAGACCATAGCTAGGCTATTGGAATCGATATGAGATCCCATGT
1 AAGACCATAGCTAGGATA-TGGAATCGATATGAGATCCCATGA
69349161 AAGACCATA
1 AAGACCATA
69349170 TCTGGGAAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 15 0.35
43 28 0.65
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (42 bp):
AAGACCATAGCTAGGATATGGAATCGATATGAGATCCCATGA
Found at i:69356176 original size:28 final size:28
Alignment explanation
Indices: 69356111--69356211 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69356101 ATAGTGAATC
*
69356111 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69356140 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69356168 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69356198 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69356212 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69364096 original size:28 final size:28
Alignment explanation
Indices: 69364031--69364131 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69364021 ATAGTGAATC
*
69364031 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69364060 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69364088 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69364118 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69364132 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69371114 original size:29 final size:29
Alignment explanation
Indices: 69371073--69371151 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
69371063 CTTAATAATC
*
69371073 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
69371103 AACTCGTACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
69371132 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
69371152 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:69375137 original size:28 final size:28
Alignment explanation
Indices: 69375072--69375172 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69375062 ATAGTGAATC
*
69375072 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69375101 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69375129 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69375159 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69375173 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69379162 original size:29 final size:29
Alignment explanation
Indices: 69379126--69379259 Score: 180
Period size: 29 Copynumber: 4.6 Consensus size: 29
69379116 AATAAACGAT
*
69379126 CTCGCACACTTAGTGCCATGCAATTTAAG
1 CTCGCACACTTAGTGCCATACAATTTAAG
*
69379155 CTCGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATACAATTTAAG
* *
69379184 TTCGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATACAATTTAAG
* * *
69379213 TTCGCACACTTAGTGCCATAC-CTTCCAAG
1 CTCGCACACTTAGTGCCATACAATT-TAAG
*
69379242 CCCGCACACTTAGTGCCA
1 CTCGCACACTTAGTGCCA
69379260 ATCTTGTCAC
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
28 2 0.02
29 94 0.98
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
CTCGCACACTTAGTGCCATACAATTTAAG
Found at i:69387077 original size:29 final size:29
Alignment explanation
Indices: 69387041--69387174 Score: 180
Period size: 29 Copynumber: 4.6 Consensus size: 29
69387031 AATAAACGAT
*
69387041 CTCGCACACTTAGTGCCATGCAATTTAAG
1 CTCGCACACTTAGTGCCATACAATTTAAG
*
69387070 CTCGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATACAATTTAAG
* *
69387099 TTCGCACACTTAGTGCCATATAATTTAAG
1 CTCGCACACTTAGTGCCATACAATTTAAG
* * *
69387128 TTCGCACACTTAGTGCCATAC-CTTCCAAG
1 CTCGCACACTTAGTGCCATACAATT-TAAG
*
69387157 CCCGCACACTTAGTGCCA
1 CTCGCACACTTAGTGCCA
69387175 ATCTTGTCAC
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
28 2 0.02
29 94 0.98
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
CTCGCACACTTAGTGCCATACAATTTAAG
Found at i:69389988 original size:9 final size:9
Alignment explanation
Indices: 69389918--69390193 Score: 62
Period size: 9 Copynumber: 29.3 Consensus size: 9
69389908 GTAATTTAAA
*
69389918 TTTTTATGT
1 TTTTTATAT
*
69389927 TTTTTATAAG
1 TTTTTAT-AT
* *
69389937 TTTATATCAA
1 TTTTTAT-AT
* *
69389947 TTTTAATAA
1 TTTTTATAT
69389956 TTTTTATA-
1 TTTTTATAT
*
69389964 TTTTTATGTT
1 TTTTTAT-AT
69389974 TTTTTATAT
1 TTTTTATAT
69389983 TTTTTATAGAAT
1 TTTTTAT---AT
69389995 TTTTTAATACGT
1 TTTTT-ATA--T
69390007 TTTTTATAAAAT
1 TTTTTAT---AT
**
69390019 TTTAAATAT
1 TTTTTATAT
*
69390028 GTTTTAT-T
1 TTTTTATAT
*
69390036 AATTTTAT-T
1 -TTTTTATAT
69390045 TTTTTATAAT
1 TTTTTAT-AT
* *
69390055 TTATTAGAT
1 TTTTTATAT
* *
69390064 TTATTAGA-
1 TTTTTATAT
69390072 TTTTTATAAT
1 TTTTTAT-AT
*
69390082 ATTTTATA-
1 TTTTTATAT
*
69390090 TTTTTATAA
1 TTTTTATAT
*
69390099 TTTTTATAAG
1 TTTTTAT-AT
** *
69390109 TTCATATCAA
1 TTTTTAT-AT
*
69390119 TTTTCATA-
1 TTTTTATAT
*
69390127 TTTTTAAAT
1 TTTTTATAT
* *
69390136 ATTTTAAAT
1 TTTTTATAT
* *
69390145 ATTTGATCA-
1 TTTTTAT-AT
69390154 TTTTTATAT
1 TTTTTATAT
*
69390163 TTTTTATAA
1 TTTTTATAT
*
69390172 TTTTTGTGAT
1 TTTTTAT-AT
*
69390182 TTTTAATAT
1 TTTTTATAT
69390191 TTT
1 TTT
69390194 ATAGAAAAAT
Statistics
Matches: 201, Mismatches: 43, Indels: 46
0.69 0.15 0.16
Matches are distributed among these distances:
8 33 0.16
9 94 0.47
10 50 0.25
11 2 0.01
12 19 0.09
13 2 0.01
14 1 0.00
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (9 bp):
TTTTTATAT
Found at i:69390026 original size:23 final size:24
Alignment explanation
Indices: 69389982--69390032 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
69389972 TTTTTTTATA
* *
69389982 TTTTTTATAGAATTTTTTAATACG
1 TTTTTTATAGAAATTTTAAATACG
*
69390006 TTTTTTATA-AAATTTTAAATATG
1 TTTTTTATAGAAATTTTAAATACG
69390029 TTTT
1 TTTT
69390033 ATTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (24 bp):
TTTTTTATAGAAATTTTAAATACG
Found at i:69390058 original size:45 final size:45
Alignment explanation
Indices: 69390009--69390101 Score: 100
Period size: 45 Copynumber: 2.1 Consensus size: 45
69389999 TAATACGTTT
* * *
69390009 TTTATAAAATTT-TAAATATGTTTTATTA-ATTTTATTTTTTTATAA
1 TTTATAAAATTTAT-AAGAT-TTTTATAATATTTTATATTTTTATAA
* * *
69390054 TTTATTAGATTTATTAGATTTTTATAATATTTTATATTTTTATAA
1 TTTATAAAATTTATAAGATTTTTATAATATTTTATATTTTTATAA
69390099 TTT
1 TTT
69390102 TTATAAGTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
44 7 0.17
45 32 0.80
46 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (45 bp):
TTTATAAAATTTATAAGATTTTTATAATATTTTATATTTTTATAA
Found at i:69390092 original size:18 final size:17
Alignment explanation
Indices: 69390071--69390186 Score: 90
Period size: 18 Copynumber: 6.4 Consensus size: 17
69390061 GATTTATTAG
69390071 ATTTTTATAATATTTTAT
1 ATTTTTATAAT-TTTTAT
69390089 ATTTTTATAATTTTTAT
1 ATTTTTATAATTTTTAT
** *
69390106 AAGTTCATATCAATTTTCAT
1 -A-TTTTTAT-AATTTTTAT
*
69390126 ATTTTTA-AATATTTTAA
1 ATTTTTATAAT-TTTTAT
* *
69390143 ATATTTGATCATTTTTAT
1 AT-TTTTATAATTTTTAT
*
69390161 ATTTTTTATAATTTTTGT
1 A-TTTTTATAATTTTTAT
69390179 GATTTTTA
1 -ATTTTTA
69390187 ATATTTTATA
Statistics
Matches: 77, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
16 3 0.04
17 12 0.16
18 44 0.57
19 10 0.13
20 8 0.10
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (17 bp):
ATTTTTATAATTTTTAT
Found at i:69398384 original size:18 final size:17
Alignment explanation
Indices: 69398361--69398396 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
69398351 CAATTATTGG
69398361 TTAATTTAATTTGAAAGT
1 TTAATTT-ATTTGAAAGT
*
69398379 TTAATTTTTTTGAAAGT
1 TTAATTTATTTGAAAGT
69398396 T
1 T
69398397 CAGTTAATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (17 bp):
TTAATTTATTTGAAAGT
Found at i:69398567 original size:19 final size:20
Alignment explanation
Indices: 69398529--69398567 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
69398519 TCATATGCAT
*
69398529 AATAATTTTAATAAATATAA
1 AATAATTTTAATAAAAATAA
69398549 AATAATTTT-ATAAAAATAA
1 AATAATTTTAATAAAAATAA
69398568 CATTCTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
AATAATTTTAATAAAAATAA
Found at i:69398603 original size:22 final size:24
Alignment explanation
Indices: 69398558--69398603 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
69398548 AAATAATTTT
*
69398558 ATAAAAATAACATTCTTTTGAATA
1 ATAAAAATAACATTCTTTTAAATA
*
69398582 ATAAAAATCACA-T-TTTTAAATA
1 ATAAAAATAACATTCTTTTAAATA
69398604 CAATTAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 1 0.05
24 11 0.55
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.37
Consensus pattern (24 bp):
ATAAAAATAACATTCTTTTAAATA
Found at i:69401698 original size:47 final size:47
Alignment explanation
Indices: 69401645--69401806 Score: 174
Period size: 47 Copynumber: 3.5 Consensus size: 47
69401635 CGGATATTTG
69401645 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTA
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTA
* * * *
69401692 GGCATCCAAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAAC--
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AGATG-TAACTA
*
69401741 -G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAA-ATGTAACTA
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGT-AAGATGTAACTA
* *
69401785 GGCATCCGAACTCATTGAGTTG
1 GGCATCCAAACTCGTTGAGTTG
69401807 TTATGGATGC
Statistics
Matches: 95, Mismatches: 10, Indels: 20
0.76 0.08 0.16
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 26 0.27
47 48 0.51
48 1 0.01
49 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (47 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTAAGATGTAACTA
Found at i:69409663 original size:46 final size:45
Alignment explanation
Indices: 69409596--69409685 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 45
69409586 ATTACATCAA
* *
69409596 TGGAGCTTATCGATTTAGCTCG-TAAAAGCTTACTATTTCAGCTCAT
1 TGGAGCTTATCGATTCAGCTCGAT-AAAGCTTACT-GTTCAGCTCAT
* *
69409642 TGGAGCTTATTGATTCAGCTCGATAGAGCTTACTGTTCAGCTCA
1 TGGAGCTTATCGATTCAGCTCGATAAAGCTTACTGTTCAGCTCA
69409686 ATAGAGTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
45 9 0.23
46 29 0.74
47 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (45 bp):
TGGAGCTTATCGATTCAGCTCGATAAAGCTTACTGTTCAGCTCAT
Found at i:69409683 original size:22 final size:21
Alignment explanation
Indices: 69409622--69409702 Score: 72
Period size: 23 Copynumber: 3.6 Consensus size: 21
69409612 AGCTCGTAAA
* *
69409622 AGCTTACTATTTCAGCTCATTGG
1 AGCTTACT-GTTCAGCTCA-TAG
*
69409645 AGCTTATTGATTCAGCTCGATAG
1 AGCTTACTG-TTCAGCTC-ATAG
69409668 AGCTTACTGTTCAGCTCAATAG
1 AGCTTACTGTTCAGCTC-ATAG
* *
69409690 AGTTTACTATTCA
1 AGCTTACTGTTCA
69409703 TCAGCTCGGG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
22 23 0.47
23 25 0.51
24 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (21 bp):
AGCTTACTGTTCAGCTCATAG
Found at i:69414431 original size:40 final size:40
Alignment explanation
Indices: 69414387--69414617 Score: 408
Period size: 40 Copynumber: 5.8 Consensus size: 40
69414377 GATATAGCTT
*
69414387 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
69414427 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
69414467 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
69414507 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
69414547 CTCGCACAAATGCCTTCGGGACTTAGCCCAGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
69414587 CTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGG
69414618 ATATCAATCC
Statistics
Matches: 182, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 182 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:69414512 original size:80 final size:80
Alignment explanation
Indices: 69414361--69414621 Score: 420
Period size: 80 Copynumber: 3.3 Consensus size: 80
69414351 AAACCAAGTA
* * *
69414361 CCTTCGGG-TTTAG-CCGGATATAGCT-TCTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
69414423 GTAACTCGCACAATTG
65 GTAACTCGCACAAATG
* * *
69414439 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
69414504 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
69414519 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
69414584 TAACTCGCACAAATG
66 TAACTCGCACAAATG
69414599 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
69414622 CAATCCGAAT
Statistics
Matches: 169, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
78 8 0.05
79 5 0.03
80 156 0.92
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:69422523 original size:40 final size:40
Alignment explanation
Indices: 69422469--69422662 Score: 336
Period size: 40 Copynumber: 4.9 Consensus size: 40
69422459 GATATAGCTT
*
69422469 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
69422509 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
69422549 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
69422589 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
69422629 CTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
69422663 CAATCCGAAT
Statistics
Matches: 147, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 13 0.09
40 134 0.91
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:69422578 original size:80 final size:80
Alignment explanation
Indices: 69422442--69422662 Score: 340
Period size: 80 Copynumber: 2.8 Consensus size: 80
69422432 AAACCAAGTA
** * *
69422442 CCTTCGGGGTTTAG-CCGGATATAGCT-TCTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
69422505 GTAACTCGCACAATTG
65 GTAACTCGCACAAATG
* * *
69422521 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
69422586 TAACTCGCACAAATG
66 TAACTCGCACAAATG
69422601 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
69422663 CAATCCGAAT
Statistics
Matches: 129, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
79 26 0.20
80 103 0.80
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:69428097 original size:43 final size:43
Alignment explanation
Indices: 69428049--69428152 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 43
69428039 ACCGAGATGA
* *
69428049 GATTACATGTAAGACCATGTCTAGGACATTGGCATCGTTAAT-T
1 GATTACATGTAAGACCATGTCTAGGACAGTGGCATCGAT-ATGT
* * * *
69428092 GATTACGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATGT
1 GATTACATGTAAGACCATGTCTAGGACAGTGGCATCGATATGT
69428135 GA-TACCATGTAAGACCAT
1 GATTA-CATGTAAGACCAT
69428153 ATTTGGGATA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 4 0.08
43 47 0.92
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTAGGACAGTGGCATCGATATGT
Found at i:69432648 original size:70 final size:71
Alignment explanation
Indices: 69432566--69432728 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
69432556 CGATTTGTCT
*
69432566 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCG-CCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATTTAT
69432630 CTTTCA
66 CTTTCA
69432636 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATTTAT
69432701 CTTTCA
66 CTTTCA
69432707 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
69432729 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 48 0.53
71 43 0.47
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATTTAT
CTTTCA
Done.