Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 228 of 425
Found at i:69432766 original size:71 final size:70
Alignment explanation
Indices: 69432566--69432762 Score: 258
Period size: 70 Copynumber: 2.8 Consensus size: 70
69432556 CGATTTGTCT
* * * *
69432566 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCG-CCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69432630 CTTTCA
65 CTTTCA
* * *
69432636 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69432701 CTTTCA
65 CTTTCA
* *
69432707 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
69432763 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 49 0.41
71 46 0.39
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:69436352 original size:40 final size:39
Alignment explanation
Indices: 69436288--69436437 Score: 183
Period size: 39 Copynumber: 3.8 Consensus size: 39
69436278 GCTACTCGTT
* * * *** *
69436288 CAAACGCCTTCGGGACATAGCCCGGTTATGGGAACCCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
*
69436328 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
* *
69436368 CAATTGCCTTCGGGCTTAGCCCGGATATCATAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
*
69436407 CAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CAAATGCCTTCGGGCTTAGCCCGGATATCAC
69436438 TCGAACATTC
Statistics
Matches: 98, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 53 0.54
40 45 0.46
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATCACAACTCGCA
Found at i:69436403 original size:39 final size:39
Alignment explanation
Indices: 69436324--69436437 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
69436314 TATGGGAACC
* *
69436324 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
69436364 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
69436403 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
69436438 TCGAACATTC
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
39 53 0.76
40 17 0.24
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:69443422 original size:71 final size:71
Alignment explanation
Indices: 69443306--69443469 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
69443296 CGATTTGTCT
69443306 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69443371 CTTTCA
66 CTTTCA
69443377 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69443442 CTTTCA
66 CTTTCA
69443448 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
69443470 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:69454954 original size:39 final size:40
Alignment explanation
Indices: 69454907--69455051 Score: 186
Period size: 40 Copynumber: 3.6 Consensus size: 40
69454897 AATGTTCGAG
69454907 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
*
69454946 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAAGTTG
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCG-AGTTA
* ** *
69454986 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
** * *
69455026 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAGTCCCGAAGGC
69455052 GTTTGAACGA
Statistics
Matches: 93, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.37
40 43 0.46
41 16 0.17
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (40 bp):
TGATATCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA
Found at i:69455072 original size:80 final size:79
Alignment explanation
Indices: 69454905--69455075 Score: 184
Period size: 80 Copynumber: 2.2 Consensus size: 79
69454895 TGAATGTTCG
** *
69454905 AGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGG
1 AGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGG
**
69454970 CAATTGTGCGAAGT
66 CAATTGAACGAAGT
* * ** * *
69454984 TGTGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTACCATAACCGGGCTATGTCCCGAA
1 AGTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAG-CCCGAA
**
69455049 GGCGTTTGAACG-AGT
64 GGCAATTGAACGAAGT
69455064 AGCT-ATATCCGG
1 AG-TGATATCCGG
69455076 ATAAACTCCG
Statistics
Matches: 75, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
79 16 0.21
80 44 0.59
81 15 0.20
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (79 bp):
AGTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTACCATAACCGGGCTAAGCCCGAAGG
CAATTGAACGAAGT
Found at i:69463019 original size:40 final size:39
Alignment explanation
Indices: 69462892--69463033 Score: 187
Period size: 38 Copynumber: 3.6 Consensus size: 39
69462882 AATGTTCGAG
69462892 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
69462931 TGATATCCGGGCTAAGCCC-AAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
69462969 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * * *
69463009 CCATAACCGGGCTATGTCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGC
69463034 GTTTGAACGA
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
38 33 0.37
39 30 0.33
40 27 0.30
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:69465712 original size:12 final size:12
Alignment explanation
Indices: 69465695--69465719 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69465685 TGTAAGAAAG
69465695 TTCATCAAATAC
1 TTCATCAAATAC
69465707 TTCATCAAATAC
1 TTCATCAAATAC
69465719 T
1 T
69465720 CTGATAGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (12 bp):
TTCATCAAATAC
Found at i:69471458 original size:26 final size:26
Alignment explanation
Indices: 69471402--69471458 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
69471392 TTTTATTAAT
69471402 ATTAACCTTTAATTATTAAATACCAAA
1 ATTAACCTTTAATTA-TAAATACCAAA
69471429 ATTAACCTTTTAATTA-AACA-ACCAAA
1 ATTAACC-TTTAATTATAA-ATACCAAA
69471455 ATTA
1 ATTA
69471459 CTTAAAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 12 0.43
27 8 0.29
28 8 0.29
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (26 bp):
ATTAACCTTTAATTATAAATACCAAA
Found at i:69478053 original size:28 final size:28
Alignment explanation
Indices: 69477988--69478088 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69477978 ATAGTGAATC
*
69477988 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69478017 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69478045 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69478075 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69478089 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69485968 original size:28 final size:28
Alignment explanation
Indices: 69485903--69486003 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
69485893 ATAGTGAATC
*
69485903 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
69485932 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
69485960 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
69485990 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69486004 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69487944 original size:23 final size:23
Alignment explanation
Indices: 69487904--69488065 Score: 118
Period size: 23 Copynumber: 6.9 Consensus size: 23
69487894 AAACTCCTCC
*
69487904 TGAGCTGATAAACTGTAAGCTCTAA
1 TGAGCTG--AAACAGTAAGCTCTAA
*
69487929 TGAGCTGAAACGGTAAGCTCT-A
1 TGAGCTGAAACAGTAAGCTCTAA
* *
69487951 TCGAGTTG-AACAGTAAGCTCTAT
1 T-GAGCTGAAACAGTAAGCTCTAA
*
69487974 TGAGCTG-AACAATAAGCTCATACA
1 TGAGCTGAAACAGTAAGCTC-TA-A
* *
69487998 --AGCTGAAACGGTAAGCTCCAA
1 TGAGCTGAAACAGTAAGCTCTAA
* *
69488019 TGAGCTGAAAACAGTAACCTCTTA
1 TGAGCTG-AAACAGTAAGCTCTAA
*
69488043 CGAGCTGATATATCAGTAAGCTC
1 TGAGCTGA-A-A-CAGTAAGCTC
69488066 ATACGAGATG
Statistics
Matches: 110, Mismatches: 16, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
21 1 0.01
22 36 0.33
23 37 0.34
24 19 0.17
25 8 0.07
26 9 0.08
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAA
Found at i:69487968 original size:45 final size:46
Alignment explanation
Indices: 69487913--69488065 Score: 132
Period size: 45 Copynumber: 3.3 Consensus size: 46
69487903 CTGAGCTGAT
* ** * *
69487913 AAACTGTAAGCTCTAATGAGCTGAAACGGTAAGCTC-TATCGAGTTG
1 AAACAGTAAGCTCTAATGAGCTGAAACAATAAGCTCATA-CAAGCTG
*
69487959 -AACAGTAAGCTCTATTGAGCTG-AACAATAAGCTCATACAAGCTG
1 AAACAGTAAGCTCTAATGAGCTGAAACAATAAGCTCATACAAGCTG
* * * * * *
69488003 AAACGGTAAGCTCCAATGAGCTGAAAACAGTAACCTCTTACGAGCTG
1 AAACAGTAAGCTCTAATGAGCTG-AAACAATAAGCTCATACAAGCTG
69488050 ATATATCAGTAAGCTC
1 A-A-A-CAGTAAGCTC
69488066 ATACGAGATG
Statistics
Matches: 86, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
44 15 0.17
45 41 0.48
47 19 0.22
48 1 0.01
49 1 0.01
50 9 0.10
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (46 bp):
AAACAGTAAGCTCTAATGAGCTGAAACAATAAGCTCATACAAGCTG
Found at i:69487969 original size:22 final size:21
Alignment explanation
Indices: 69487918--69488050 Score: 95
Period size: 22 Copynumber: 5.9 Consensus size: 21
69487908 CTGATAAACT
*
69487918 GTAAGCTCTAATGAGCTGAAACG
1 GTAAGCTCT-ATGAGCTG-AACA
*
69487941 GTAAGCTCTATCGAGTTGAACA
1 GTAAGCTCTAT-GAGCTGAACA
69487963 GTAAGCTCTATTGAGCTGAACA
1 GTAAGCTCTA-TGAGCTGAACA
* ** *
69487985 ATAAGCTCATACAAGCTGAAACG
1 GTAAGCTC-TATGAGCTG-AACA
*
69488008 GTAAGCTCCAATGAGCTGAAAACA
1 GTAAGCT-CTATGAGCTG--AACA
* *
69488032 GTAACCTCTTACGAGCTGA
1 GTAAGCTC-TATGAGCTGA
69488051 TATATCAGTA
Statistics
Matches: 88, Mismatches: 15, Indels: 15
0.75 0.13 0.13
Matches are distributed among these distances:
22 37 0.42
23 33 0.38
24 18 0.20
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (21 bp):
GTAAGCTCTATGAGCTGAACA
Found at i:69491205 original size:27 final size:26
Alignment explanation
Indices: 69491176--69491286 Score: 114
Period size: 27 Copynumber: 4.1 Consensus size: 26
69491166 CACCCGGTTT
* * *
69491176 GTAAAATTACCGAAATACCCTGGTAGT
1 GTAAAATAACCGTAATACCCT-GTAGG
* *
69491203 GTAAAATGACCGTAATACCCTTTTAGG
1 GTAAAATAACCGTAATACCC-TGTAGG
*
69491230 GTAAAATAACCGTAATGCCCCTGTAGG
1 GTAAAATAACCGTAAT-ACCCTGTAGG
* *
69491257 GTGAAATAACCGTAATACCCCTGTATG
1 GTAAAATAACCGTAATA-CCCTGTAGG
69491284 GTA
1 GTA
69491287 GAATGACGAT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
27 66 0.94
28 4 0.06
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (26 bp):
GTAAAATAACCGTAATACCCTGTAGG
Found at i:69495098 original size:27 final size:27
Alignment explanation
Indices: 69495013--69495208 Score: 189
Period size: 27 Copynumber: 7.3 Consensus size: 27
69495003 CCCGGATTGT
** * *
69495013 AAAATTACCGAAATACTCTT-GATTTGT
1 AAAATTATTGAAATACCCTTAG-TTTGG
* **
69495040 AAAAGTATTGAAATACCCCCAGTTTGG
1 AAAATTATTGAAATACCCTTAGTTTGG
* *
69495067 AAAATTATTGAAATACCCTTGGTTTGT
1 AAAATTATTGAAATACCCTTAGTTTGG
*** * *
69495094 AAAATTACCAAAATACCCTCAATTTGG
1 AAAATTATTGAAATACCCTTAGTTTGG
*
69495121 AAAATTATTGAAATACCCTCAGTTTGG
1 AAAATTATTGAAATACCCTTAGTTTGG
* *
69495148 AAAATTATAGAAATA-CTTTCAGTTTGG
1 AAAATTATTGAAATACCCTT-AGTTTGG
* *
69495175 AAAATTACTGAAATACCCCTAGTTTGG
1 AAAATTATTGAAATACCCTTAGTTTGG
69495202 AAAATTA
1 AAAATTA
69495209 CTTAAGTACC
Statistics
Matches: 136, Mismatches: 30, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
26 2 0.01
27 131 0.96
28 3 0.02
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (27 bp):
AAAATTATTGAAATACCCTTAGTTTGG
Found at i:69495144 original size:81 final size:81
Alignment explanation
Indices: 69495009--69495274 Score: 254
Period size: 81 Copynumber: 3.3 Consensus size: 81
69494999 AGACCCCGGA
* ** * *
69495009 TTGTAAAATTACCGAAATACTCTTGATTTGTAAAAGTATTGAAATACCCCCAGTTTGGAAAATTA
1 TTGTAAAATTACCGAAATACCCTCAATTTGGAAAATTATTGAAATACCCCCAGTTTGGAAAATTA
* *
69495074 TTGAAATACCCTT-GGT
66 TAGAAATA-CCTTCAGT
* *
69495090 TTGTAAAATTACCAAAATACCCTCAATTTGGAAAATTATTGAAATACCCTCAGTTTGGAAAATTA
1 TTGTAAAATTACCGAAATACCCTCAATTTGGAAAATTATTGAAATACCCCCAGTTTGGAAAATTA
*
69495155 TAGAAATACTTTCAGT
66 TAGAAATACCTTCAGT
* * * * * *
69495171 TTGGAAAATTACTGAAATACCC-CTAGTTTGGAAAATTACTT-AAGTACCTCCAATTT-GAAAAG
1 TTGTAAAATTACCGAAATACCCTC-AATTTGGAAAATTA-TTGAAATACCCCCAGTTTGGAAAA-
** *
69495233 TTACCGAAATA-CTTCGAAT
63 TTATAGAAATACCTTC-AGT
* * *
69495252 TCGTAAAATTATCAAAATACCCT
1 TTGTAAAATTACCGAAATACCCT
69495275 GATAGTGTAA
Statistics
Matches: 152, Mismatches: 27, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
80 12 0.08
81 138 0.91
82 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (81 bp):
TTGTAAAATTACCGAAATACCCTCAATTTGGAAAATTATTGAAATACCCCCAGTTTGGAAAATTA
TAGAAATACCTTCAGT
Found at i:69495209 original size:27 final size:27
Alignment explanation
Indices: 69495013--69495244 Score: 163
Period size: 27 Copynumber: 8.6 Consensus size: 27
69495003 CCCGGATTGT
* * * *
69495013 AAAATTACCGAAATA-CTCTTGATTTGT
1 AAAATTACTGAAATACCCCTAG-TTTGG
* * *
69495040 AAAAGTATTGAAATACCCCCAGTTTGG
1 AAAATTACTGAAATACCCCTAGTTTGG
* * * *
69495067 AAAATTATTGAAATACCCTTGGTTTGT
1 AAAATTACTGAAATACCCCTAGTTTGG
** *
69495094 AAAATTACCAAAATA-CCCTCAATTTGG
1 AAAATTACTGAAATACCCCT-AGTTTGG
*
69495121 AAAATTATTGAAATA-CCCTCAGTTTGG
1 AAAATTACTGAAATACCCCT-AGTTTGG
**
69495148 AAAATTA-TAGAAATA-CTTTCAGTTTGG
1 AAAATTACT-GAAATACCCCT-AGTTTGG
69495175 AAAATTACTGAAATACCCCTAGTTTGG
1 AAAATTACTGAAATACCCCTAGTTTGG
* * *
69495202 AAAATTACTTAAGTACCTCC-AATTT-G
1 AAAATTACTGAAATACC-CCTAGTTTGG
*
69495228 AAAAGTTACCGAAATAC
1 AAAA-TTACTGAAATAC
69495245 TTCGAATTCG
Statistics
Matches: 165, Mismatches: 33, Indels: 14
0.78 0.16 0.07
Matches are distributed among these distances:
26 9 0.05
27 148 0.90
28 8 0.05
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (27 bp):
AAAATTACTGAAATACCCCTAGTTTGG
Found at i:69495242 original size:54 final size:54
Alignment explanation
Indices: 69495050--69495244 Score: 200
Period size: 54 Copynumber: 3.6 Consensus size: 54
69495040 AAAAGTATTG
* * * * * * *
69495050 AAATACCCCCAGTTTGGAAAATTATTGAAATACCCTTGGTTTGTAAAATTACCA
1 AAATACCTCCAATTTGGAAAATTACTGAAATACCCCTAGTTTGGAAAATTACTA
*
69495104 AAATACC-CTCAATTTGGAAAATTATTGAAATA-CCCTCAGTTTGGAAAATTA-TA
1 AAATACCTC-CAATTTGGAAAATTACTGAAATACCCCT-AGTTTGGAAAATTACTA
* * * *
69495157 GAAATACTTTCAGTTTGGAAAATTACTGAAATACCCCTAGTTTGGAAAATTACTT
1 -AAATACCTCCAATTTGGAAAATTACTGAAATACCCCTAGTTTGGAAAATTACTA
* *
69495212 AAGTACCTCCAATTT-GAAAAGTTACCGAAATAC
1 AAATACCTCCAATTTGGAAAA-TTACTGAAATAC
69495245 TTCGAATTCG
Statistics
Matches: 119, Mismatches: 15, Indels: 14
0.80 0.10 0.09
Matches are distributed among these distances:
53 10 0.08
54 104 0.87
55 5 0.04
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (54 bp):
AAATACCTCCAATTTGGAAAATTACTGAAATACCCCTAGTTTGGAAAATTACTA
Found at i:69495323 original size:27 final size:27
Alignment explanation
Indices: 69495267--69495371 Score: 97
Period size: 27 Copynumber: 3.9 Consensus size: 27
69495257 AAATTATCAA
* **
69495267 AATACCC-TGATAGTGTAAAATGACTAT
1 AATACCCTTG-TAGGGTAAAATGACCGT
69495294 AATACCCTTGTAGGGTAAAATGACCGT
1 AATACCCTTGTAGGGTAAAATGACCGT
* * * *
69495321 AATGCCCCTATATGGTAAAATGACCGT
1 AATACCCTTGTAGGGTAAAATGACCGT
* *
69495348 AATA-CCTCTGTATGGTAGAATGAC
1 AATACCCT-TGTAGGGTAAAATGAC
69495372 AATTATGCCT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.03
27 61 0.94
28 2 0.03
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (27 bp):
AATACCCTTGTAGGGTAAAATGACCGT
Found at i:69497707 original size:12 final size:12
Alignment explanation
Indices: 69497690--69497715 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69497680 GGTCATCATT
69497690 TTATTATTTTTG
1 TTATTATTTTTG
69497702 TTATTATTTTTG
1 TTATTATTTTTG
69497714 TT
1 TT
69497716 TATGTTGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (12 bp):
TTATTATTTTTG
Found at i:69499378 original size:30 final size:30
Alignment explanation
Indices: 69499344--69499404 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69499334 TTCCCGAGCC
69499344 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
69499374 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
69499404 T
1 T
69499405 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:69502041 original size:17 final size:18
Alignment explanation
Indices: 69502008--69502041 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
69501998 AAAACTTAAG
69502008 CCTGTGTTGACTCTAGCA
1 CCTGTGTTGACTCTAGCA
*
69502026 CCTGTTTTGA-TCTAGC
1 CCTGTGTTGACTCTAGC
69502042 CTGAGTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.38
Consensus pattern (18 bp):
CCTGTGTTGACTCTAGCA
Found at i:69504498 original size:4 final size:4
Alignment explanation
Indices: 69504491--69504515 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
69504481 ATGAATAAAA
69504491 AAAG AAAG AAAG AAAG AAAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG A
69504516 CATACAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:69504793 original size:12 final size:12
Alignment explanation
Indices: 69504776--69504802 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
69504766 AAATGAAGAA
69504776 AAATTAAATTGT
1 AAATTAAATTGT
69504788 AAATTAAATTGT
1 AAATTAAATTGT
69504800 AAA
1 AAA
69504803 ATTTGAGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (12 bp):
AAATTAAATTGT
Found at i:69506140 original size:21 final size:21
Alignment explanation
Indices: 69506114--69506155 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
69506104 TCTCGAACTC
69506114 AAATGTGTTGATGTTTATCTT
1 AAATGTGTTGATGTTTATCTT
69506135 AAATGTGTTGATGTTTATCTT
1 AAATGTGTTGATGTTTATCTT
69506156 TTGTATTGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.19, T:0.52
Consensus pattern (21 bp):
AAATGTGTTGATGTTTATCTT
Found at i:69511946 original size:27 final size:27
Alignment explanation
Indices: 69511914--69512077 Score: 202
Period size: 27 Copynumber: 6.1 Consensus size: 27
69511904 ACCGTAATAT
*
69511914 CCCTGTAGGGTAAAATAACCATAATGC
1 CCCTGTAGGGTAAAATGACCATAATGC
* *
69511941 CCCTGTAGGGTAAAATGACTATAATGG
1 CCCTGTAGGGTAAAATGACCATAATGC
*
69511968 CCCTGTAGGGTAAAATGACCGTAATGC
1 CCCTGTAGGGTAAAATGACCATAATGC
**
69511995 CCCTGTAGGGTAAAATGACTGTAATGC
1 CCCTGTAGGGTAAAATGACCATAATGC
* * * * *
69512022 CCATGTAAGTTAAAATGACCTTAATAC
1 CCCTGTAGGGTAAAATGACCATAATGC
* * *
69512049 CCCTGTATGGTAAAATGACAATTATGC
1 CCCTGTAGGGTAAAATGACCATAATGC
69512076 CC
1 CC
69512078 TTATGTTCCA
Statistics
Matches: 117, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (27 bp):
CCCTGTAGGGTAAAATGACCATAATGC
Found at i:69512506 original size:33 final size:33
Alignment explanation
Indices: 69512481--69512544 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
69512471 CTGCTACTGT
69512481 ATAGGGCT-AAGGCCCAGACTGCACTGATCTTGA
1 ATAGGGCTCAA-GCCCAGACTGCACTGATCTTGA
*
69512514 ATAGGGCTCAAGCCCAGACTGTTACTGATCT
1 ATAGGGCTCAAGCCCAGACTG-CACTGATCT
69512545 GGGCTTAGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.23
Consensus pattern (33 bp):
ATAGGGCTCAAGCCCAGACTGCACTGATCTTGA
Found at i:69520708 original size:29 final size:28
Alignment explanation
Indices: 69520641--69520712 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
69520631 AAAATTGTAC
* * *
69520641 AGCACTAAGTGTGCGAGTTTGATTCTAT
1 AGCACTAAGTGTGCGAGTCTGAATATAT
69520669 AGCACTAAGTGTGCGAG-CTGAAAATATAT
1 AGCACTAAGTGTGCGAGTCTG--AATATAT
69520698 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
69520713 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 17 0.44
29 20 0.51
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGAATATAT
Found at i:69524609 original size:18 final size:18
Alignment explanation
Indices: 69524567--69524609 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
69524557 ACAGTAATAG
* *
69524567 TAAATAGTGTAGTAACAC
1 TAAACAGTGTAGTAACAA
69524585 T-AACAGTGTAGTAACAA
1 TAAACAGTGTAGTAACAA
69524602 TAAACAGT
1 TAAACAGT
69524610 ATGCAAGTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.26
Consensus pattern (18 bp):
TAAACAGTGTAGTAACAA
Found at i:69525064 original size:27 final size:27
Alignment explanation
Indices: 69524920--69525053 Score: 151
Period size: 27 Copynumber: 5.0 Consensus size: 27
69524910 AAACATACAT
* * * *
69524920 CACATAGGGGTAAAACAGTCATCTCAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
69524947 CATAAAAGGGCAAAATAGTTATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
69524974 CACATAAAGGCAAAACAGTTATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
69525001 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
69525028 CTCATAAGGGCAAAATAGTCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
69525054 TCGATTAAGG
Statistics
Matches: 89, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:69526802 original size:20 final size:20
Alignment explanation
Indices: 69526777--69526820 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
69526767 AGGATGGAGA
69526777 CATGGAGTGAAAAGGGGGAT
1 CATGGAGTGAAAAGGGGGAT
69526797 CATGGAGTGAAAAGGGGGAT
1 CATGGAGTGAAAAGGGGGAT
69526817 CATG
1 CATG
69526821 CACCCTCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.07, G:0.43, T:0.16
Consensus pattern (20 bp):
CATGGAGTGAAAAGGGGGAT
Found at i:69531524 original size:540 final size:540
Alignment explanation
Indices: 69530499--69531583 Score: 2154
Period size: 540 Copynumber: 2.0 Consensus size: 540
69530489 CAATTTTGAG
69530499 ATGTTTTCCCCATCGTTATGAACTAAACTCCCTAAATACCTAAAAGAGATGAAACCCAAGACAGA
1 ATGTTTTCCCCATCGTTATGAACTAAACTCCCTAAATACCTAAAAGAGATGAAACCCAAGACAGA
69530564 TCTTATTACCATTTGAATTATATGATAAATACTTGTTCTTACTCTTAATTATGTGTTCTTAATTC
66 TCTTATTACCATTTGAATTATATGATAAATACTTGTTCTTACTCTTAATTATGTGTTCTTAATTC
69530629 TTGCTTTAATATTTTAGGATATTAACTCAAGTATGATGTGCTTATTCAGTGGAGCAAAAGTCCCT
131 TTGCTTTAATATTTTAGGATATTAACTCAAGTATGATGTGCTTATTCAGTGGAGCAAAAGTCCCT
69530694 GTTTAAGAGTAGATCTAGCATAATTAAGCAGAATTGAATGCAATCCTAGACATAAGACGATGTAA
196 GTTTAAGAGTAGATCTAGCATAATTAAGCAGAATTGAATGCAATCCTAGACATAAGACGATGTAA
69530759 ATCTGTCGGATTAGAGTCAAATCTAATAAGGGAATCCATAGATCGAGTTAATGTGACAACAGAGG
261 ATCTGTCGGATTAGAGTCAAATCTAATAAGGGAATCCATAGATCGAGTTAATGTGACAACAGAGG
69530824 TTTTAATTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTGTTTTTAGTCTCGAGAGAGAT
326 TTTTAATTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTGTTTTTAGTCTCGAGAGAGAT
69530889 ATTAACACAAACTAGGGATTTCTACGGATTAAGTCAAGTGAATAAATCATCTAGTTCAAAAGTAG
391 ATTAACACAAACTAGGGATTTCTACGGATTAAGTCAAGTGAATAAATCATCTAGTTCAAAAGTAG
69530954 TAAGTGAAGTCTAGGTGGATTCTTCCTTGGGTATTGTCTTCTCCATTGGTTTTTCCAAAAATATT
456 TAAGTGAAGTCTAGGTGGATTCTTCCTTGGGTATTGTCTTCTCCATTGGTTTTTCCAAAAATATT
69531019 TTCCAACTTTTATTTCTGT-
521 TTCCAACTTTTATTTCTGTC
69531038 ATGTTTTCCCCCATCGTTATGAACTAAACTCCCTAAATACCTAAAAGAGATGAAACCCAAGACAG
1 ATGTTTT-CCCCATCGTTATGAACTAAACTCCCTAAATACCTAAAAGAGATGAAACCCAAGACAG
69531103 ATCTTATTACCATTTGAATTATATGATAAATACTTGTTCTTACTCTTAATTATGTGTTCTTAATT
65 ATCTTATTACCATTTGAATTATATGATAAATACTTGTTCTTACTCTTAATTATGTGTTCTTAATT
69531168 CTTGCTTTAATATTTTAGGATATTAACTCAAGTATGATGTGCTTATTCAGTGGAGCAAAAGTCCC
130 CTTGCTTTAATATTTTAGGATATTAACTCAAGTATGATGTGCTTATTCAGTGGAGCAAAAGTCCC
69531233 TGTTTAAGAGTAGATCTAGCATAATTAAGCAGAATTGAATGCAATCCTAGACATAAGACGATGTA
195 TGTTTAAGAGTAGATCTAGCATAATTAAGCAGAATTGAATGCAATCCTAGACATAAGACGATGTA
69531298 AATCTGTCGGATTAGAGTCAAATCTAATAAGGGAATCCATAGATCGAGTTAATGTGACAACAGAG
260 AATCTGTCGGATTAGAGTCAAATCTAATAAGGGAATCCATAGATCGAGTTAATGTGACAACAGAG
69531363 GTTTTAATTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTGTTTTTAGTCTCGAGAGAGA
325 GTTTTAATTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTGTTTTTAGTCTCGAGAGAGA
69531428 TATTAACACAAACTAGGGATTTCTACGGATTAAGTCAAGTGAATAAATCATCTAGTTCAAAAGTA
390 TATTAACACAAACTAGGGATTTCTACGGATTAAGTCAAGTGAATAAATCATCTAGTTCAAAAGTA
69531493 GTAAGTGAAGTCTAGGTGGATTCTTCCTTGGGTATTGTCTTCTCCATTGGTTTTTCCAAAAATAT
455 GTAAGTGAAGTCTAGGTGGATTCTTCCTTGGGTATTGTCTTCTCCATTGGTTTTTCCAAAAATAT
69531558 TTTCCAACTTTTATTTCTGTC
520 TTTCCAACTTTTATTTCTGTC
69531579 ATGTT
1 ATGTT
69531584 CTTAGTTAAT
Statistics
Matches: 544, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
539 7 0.01
540 532 0.98
541 5 0.01
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (540 bp):
ATGTTTTCCCCATCGTTATGAACTAAACTCCCTAAATACCTAAAAGAGATGAAACCCAAGACAGA
TCTTATTACCATTTGAATTATATGATAAATACTTGTTCTTACTCTTAATTATGTGTTCTTAATTC
TTGCTTTAATATTTTAGGATATTAACTCAAGTATGATGTGCTTATTCAGTGGAGCAAAAGTCCCT
GTTTAAGAGTAGATCTAGCATAATTAAGCAGAATTGAATGCAATCCTAGACATAAGACGATGTAA
ATCTGTCGGATTAGAGTCAAATCTAATAAGGGAATCCATAGATCGAGTTAATGTGACAACAGAGG
TTTTAATTAGAAAGAGATTTCAATTAATCAACCTAGAGTCAGTTGTTTTTAGTCTCGAGAGAGAT
ATTAACACAAACTAGGGATTTCTACGGATTAAGTCAAGTGAATAAATCATCTAGTTCAAAAGTAG
TAAGTGAAGTCTAGGTGGATTCTTCCTTGGGTATTGTCTTCTCCATTGGTTTTTCCAAAAATATT
TTCCAACTTTTATTTCTGTC
Found at i:69534090 original size:29 final size:27
Alignment explanation
Indices: 69533994--69534090 Score: 115
Period size: 28 Copynumber: 3.4 Consensus size: 27
69533984 AATAAGCCCC
69533994 CACACTTAGTGCT-TAATAGTCGAACTCG
1 CACACTTAGTGCTATAA-A-TCGAACTCG
*
69534022 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATA-AATCGAACTCG
* *
69534050 CACACTTAGTGCTATACAATTTGAACCCG
1 CACACTTAGTGCTATA-AA-TCGAACTCG
69534079 CACACTTAGTGC
1 CACACTTAGTGC
69534091 CAATCTCATG
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
28 39 0.64
29 21 0.34
30 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (27 bp):
CACACTTAGTGCTATAAATCGAACTCG
Found at i:69542084 original size:29 final size:27
Alignment explanation
Indices: 69541988--69542084 Score: 115
Period size: 28 Copynumber: 3.4 Consensus size: 27
69541978 AATAAGCCCC
69541988 CACACTTAGTGCT-TAATAGTCGAACTCG
1 CACACTTAGTGCTATAA-A-TCGAACTCG
*
69542016 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATA-AATCGAACTCG
* *
69542044 CACACTTAGTGCTATACAATTTGAACCCG
1 CACACTTAGTGCTATA-AA-TCGAACTCG
69542073 CACACTTAGTGC
1 CACACTTAGTGC
69542085 CAATCTCATG
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
28 39 0.64
29 21 0.34
30 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (27 bp):
CACACTTAGTGCTATAAATCGAACTCG
Found at i:69548111 original size:39 final size:39
Alignment explanation
Indices: 69548068--69548175 Score: 155
Period size: 39 Copynumber: 2.8 Consensus size: 39
69548058 TATGAGATTG
*
69548068 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
*
69548107 AAAATATCCGGACATGAGA-CCTGCAAGCTATATGCTAGA
1 AAAATATCCGGACATGAGATCC-GCAGGCTATATGCTAGA
* * *
69548146 AATATATCCGGACTTGAGGTCCGCAGGCTA
1 AAAATATCCGGACATGAGATCCGCAGGCTA
69548176 CGTGTTGGAA
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.03
39 57 0.93
40 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (39 bp):
AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
Found at i:69548299 original size:40 final size:38
Alignment explanation
Indices: 69548166--69548305 Score: 154
Period size: 38 Copynumber: 3.6 Consensus size: 38
69548156 GACTTGAGGT
* * * *
69548166 CCGCAGGCTACGTGTTGGAATTATATTCGGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
*
69548204 CCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATC
1 CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
* * * *
69548242 CCGCAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTC
1 CCGCAGGCTTCGTGCTGGTATTATATCCG-GGTTAAA-TC
* * *
69548282 CTGTAGGCTTCGTGCTGGTGTTAT
1 CCGCAGGCTTCGTGCTGGTATTAT
69548306 GTTTGGGTTT
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
38 58 0.68
39 6 0.07
40 21 0.25
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (38 bp):
CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
Found at i:69550689 original size:65 final size:65
Alignment explanation
Indices: 69550585--69550715 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
69550575 AAGTCTGACT
*
69550585 TAACCTTGCGACTCAACGCGTCAGCTACCACATTTGCTTTGCCAGGGTGGTATTCAATCGTACAA
1 TAACCTTGCGACTCAACGCGTCAGCTACCACATTTGCTTTGCCAAGGTGGTATTCAATCGTACAA
*
69550650 TAACCTTGTGACTCAACGCGTCAGCTACCACATTTGCTTTGCCAAGGTGGTATTCAATCGTACAA
1 TAACCTTGCGACTCAACGCGTCAGCTACCACATTTGCTTTGCCAAGGTGGTATTCAATCGTACAA
69550715 T
1 T
69550716 CATAATCCTC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (65 bp):
TAACCTTGCGACTCAACGCGTCAGCTACCACATTTGCTTTGCCAAGGTGGTATTCAATCGTACAA
Found at i:69555334 original size:29 final size:29
Alignment explanation
Indices: 69555275--69555386 Score: 138
Period size: 29 Copynumber: 3.9 Consensus size: 29
69555265 CATACATGCA
* * *
69555275 TATGGCCCACTAGGCCC-AATCTCTTTCG
1 TATGGCCCATTAGGCCCAAATCACATTCG
69555303 TATGGCCCATTAGGCCCAAATCACATTCG
1 TATGGCCCATTAGGCCCAAATCACATTCG
* * **
69555332 TATGGCCCATTAGGCCCACATCCCATTTA
1 TATGGCCCATTAGGCCCAAATCACATTCG
*
69555361 TATGGTCCATTAGGCCCAAA-CACATT
1 TATGGCCCATTAGGCCCAAATCACATT
69555387 TTTAGTGATG
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
28 21 0.29
29 52 0.71
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATTCG
Found at i:69555336 original size:57 final size:57
Alignment explanation
Indices: 69555275--69555386 Score: 156
Period size: 57 Copynumber: 2.0 Consensus size: 57
69555265 CATACATGCA
* *
69555275 TATGGCCCACTAGGCCCA-ATCTC-TTTCGTATGGCCCATTAGGCCCAAATCACATTCG
1 TATGGCCCACTAGGCCCACATCCCATTT-ATATGGCCCATTAGGCCCAAA-CACATTCG
* *
69555332 TATGGCCCATTAGGCCCACATCCCATTTATATGGTCCATTAGGCCCAAACACATT
1 TATGGCCCACTAGGCCCACATCCCATTTATATGGCCCATTAGGCCCAAACACATT
69555387 TTTAGTGATG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
57 23 0.47
58 23 0.47
59 3 0.06
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCACATCCCATTTATATGGCCCATTAGGCCCAAACACATTCG
Found at i:69563334 original size:6 final size:6
Alignment explanation
Indices: 69563325--69563358 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
69563315 TTTCTTTTCC
* *
69563325 TTTTGT TTTTGT TTTTGT TTTTAT TTTTAT TTTT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTT
69563359 CAAGTTCTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (6 bp):
TTTTGT
Found at i:69565446 original size:29 final size:29
Alignment explanation
Indices: 69565304--69565434 Score: 253
Period size: 29 Copynumber: 4.5 Consensus size: 29
69565294 AAAATTGTAC
*
69565304 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
69565333 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
69565362 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
69565391 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
69565420 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
69565435 GATTCACTAT
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
29 101 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:69573518 original size:29 final size:29
Alignment explanation
Indices: 69573376--69573506 Score: 244
Period size: 29 Copynumber: 4.5 Consensus size: 29
69573366 AAAATTGTAC
* *
69573376 AGCACTAAGTGTGCGAACTAAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
69573405 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
69573434 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
69573463 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
69573492 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
69573507 GATTCACTAT
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 100 1.00
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:69576414 original size:28 final size:28
Alignment explanation
Indices: 69576377--69576498 Score: 165
Period size: 28 Copynumber: 4.3 Consensus size: 28
69576367 AAGTCTACAT
*
69576377 ACATGCATATGGCCCACTAGG-CCCAATC
1 ACATTCATATGGCCCA-TAGGCCCCAATC
* * *
69576405 TCATTCATATGGCCTATTAGGCCCAAATC
1 ACATTCATATGGCCCA-TAGGCCCCAATC
*
69576434 ACATTCATATGGCCCATCGGCCCCAATC
1 ACATTCATATGGCCCATAGGCCCCAATC
*
69576462 ACATTCATATGGCCCATTGGCCCCAATC
1 ACATTCATATGGCCCATAGGCCCCAATC
69576490 ACATTCATA
1 ACATTCATA
69576499 GTCATGCAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 63 0.76
29 20 0.24
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCATAGGCCCCAATC
Found at i:69576449 original size:57 final size:56
Alignment explanation
Indices: 69576377--69576498 Score: 174
Period size: 57 Copynumber: 2.2 Consensus size: 56
69576367 AAGTCTACAT
* * *
69576377 ACATGCATATGGCCCACTAGG-CCCAATCTCATTCATATGGCCTATTAGGCCCAAATC
1 ACATTCATATGGCCCA-TAGGCCCCAATCACATTCATATGGCCCATT-GGCCCAAATC
* *
69576434 ACATTCATATGGCCCATCGGCCCCAATCACATTCATATGGCCCATTGGCCCCAATC
1 ACATTCATATGGCCCATAGGCCCCAATCACATTCATATGGCCCATTGGCCCAAATC
69576490 ACATTCATA
1 ACATTCATA
69576499 GTCATGCAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
56 21 0.36
57 38 0.64
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.25
Consensus pattern (56 bp):
ACATTCATATGGCCCATAGGCCCCAATCACATTCATATGGCCCATTGGCCCAAATC
Found at i:69577157 original size:75 final size:75
Alignment explanation
Indices: 69577034--69577175 Score: 275
Period size: 75 Copynumber: 1.9 Consensus size: 75
69577024 ACCATTCGGC
*
69577034 CAACCTTAACCAATAAAAGAGGAACATTTACCCAAACCCCAAAATGCCTAATAAGCAATTCGGCA
1 CAACCTTAACCAATAAAAGAGGAACACTTACCCAAACCCCAAAATGCCTAATAAGCAATTCGGCA
69577099 TAAATCTGAA
66 TAAATCTGAA
69577109 CAACCTTAACCAATAAAAGAGGAACACTTACCCAAACCCCAAAATGCCTAATAAGCAATTCGGCA
1 CAACCTTAACCAATAAAAGAGGAACACTTACCCAAACCCCAAAATGCCTAATAAGCAATTCGGCA
69577174 TA
66 TA
69577176 GATCAGAAAT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 66 1.00
ACGTcount: A:0.45, C:0.27, G:0.11, T:0.18
Consensus pattern (75 bp):
CAACCTTAACCAATAAAAGAGGAACACTTACCCAAACCCCAAAATGCCTAATAAGCAATTCGGCA
TAAATCTGAA
Found at i:69600289 original size:28 final size:28
Alignment explanation
Indices: 69600257--69600355 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
69600247 GCAATAAGCC
*
69600257 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
69600285 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
69600313 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
69600342 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69600356 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:69607894 original size:28 final size:28
Alignment explanation
Indices: 69607862--69607960 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
69607852 GCAATAAGCC
*
69607862 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
69607890 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
69607918 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
69607947 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69607961 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:69610488 original size:63 final size:63
Alignment explanation
Indices: 69610410--69610535 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
69610400 AACATGAAAG
69610410 GATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTTA
1 GATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTTA
69610473 GATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTTA
1 GATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTTA
69610536 CTTACTTTCC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.37
Consensus pattern (63 bp):
GATTTTATGGAACGTAATGTATAACCATCAACCTTTCTATGAAATTCTACACCTCTCAATTTA
Found at i:69613137 original size:28 final size:28
Alignment explanation
Indices: 69613105--69613203 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
69613095 GCAATAAGCC
*
69613105 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
69613133 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
69613161 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
69613190 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69613204 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:69620755 original size:28 final size:28
Alignment explanation
Indices: 69620723--69620821 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
69620713 GCAATAAGCC
*
69620723 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
69620751 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
69620779 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
69620808 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69620822 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:69625781 original size:13 final size:12
Alignment explanation
Indices: 69625759--69625813 Score: 56
Period size: 13 Copynumber: 4.3 Consensus size: 12
69625749 CATTTAGCCA
69625759 TTTTTATTTTAT
1 TTTTTATTTTAT
69625771 TTTTATATTTTAT
1 TTTT-TATTTTAT
* *
69625784 TTTTGATTTAAT
1 TTTTTATTTTAT
*
69625796 TTTTACATTTTAAT
1 TTTT-TATTTT-AT
69625810 TTTT
1 TTTT
69625814 CTGTTTTGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
12 14 0.39
13 16 0.44
14 6 0.17
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.75
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:69625792 original size:25 final size:25
Alignment explanation
Indices: 69625758--69625813 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
69625748 TCATTTAGCC
* *
69625758 ATTTTTATTTTATTTTTATATTTT-
1 ATTTTTATTTAATTTTTACATTTTA
69625782 ATTTTTGATTTAATTTTTACATTTTA
1 ATTTTT-ATTTAATTTTTACATTTTA
69625808 ATTTTT
1 ATTTTT
69625814 CTGTTTTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 6 0.21
25 16 0.57
26 6 0.21
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (25 bp):
ATTTTTATTTAATTTTTACATTTTA
Found at i:69627422 original size:1 final size:1
Alignment explanation
Indices: 69627406--69627441 Score: 54
Period size: 1 Copynumber: 36.0 Consensus size: 1
69627396 CTCTTGACTC
* *
69627406 TTTTGTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
69627442 GCAAATACTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (1 bp):
T
Found at i:69630512 original size:46 final size:46
Alignment explanation
Indices: 69630462--69630637 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
69630452 TGGTTGAGCA
69630462 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69630508 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
69630553 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
69630601 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69630638 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:69630618 original size:93 final size:93
Alignment explanation
Indices: 69630459--69630630 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69630449 GGATGGTTGA
* *
69630459 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69630524 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
69630552 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
69630617 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69630631 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69633116 original size:29 final size:29
Alignment explanation
Indices: 69633054--69633156 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 29
69633044 GTGACGAGAT
* * *
69633054 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * * *
69633083 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
* * *
69633112 TGGCACTATGTGTGCGGGCTTGAATTATA
1 TGGCACTAAGTGTGCGAGCTTGAAATATA
69633141 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
69633157 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAAATATA
Found at i:69639913 original size:28 final size:29
Alignment explanation
Indices: 69639881--69639979 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
69639871 ATAATAAGCC
*
69639881 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
69639909 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
69639937 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
69639966 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69639980 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:69641946 original size:16 final size:16
Alignment explanation
Indices: 69641925--69641959 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
69641915 GCAAATCCCA
*
69641925 AAATGCCGAAAAGTCG
1 AAATGCCGAAAAGCCG
69641941 AAATGCCGAAAAGCCG
1 AAATGCCGAAAAGCCG
69641957 AAA
1 AAA
69641960 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.20, G:0.23, T:0.09
Consensus pattern (16 bp):
AAATGCCGAAAAGCCG
Found at i:69642260 original size:28 final size:28
Alignment explanation
Indices: 69642196--69642289 Score: 134
Period size: 28 Copynumber: 3.3 Consensus size: 28
69642186 AGGCCAGATG
* * *
69642196 GGCCATATGAATGTGATTTGGGCCTAATG
1 GGCCATATGAATGAGA-TTGGGCCTAGTA
* *
69642225 GGCTATATGAATAAGATTGGGCCTAGTA
1 GGCCATATGAATGAGATTGGGCCTAGTA
69642253 GGCCATATGAATGAGATTGGGCCTAGTA
1 GGCCATATGAATGAGATTGGGCCTAGTA
69642281 GGCCATATG
1 GGCCATATG
69642290 CATGTATGTA
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 45 0.78
29 13 0.22
ACGTcount: A:0.28, C:0.14, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCCATATGAATGAGATTGGGCCTAGTA
Found at i:69643622 original size:16 final size:17
Alignment explanation
Indices: 69643590--69643622 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
69643580 TTTAAAGAAG
69643590 GGTTTTCAATGAAAACAA
1 GGTTTTCAA-GAAAACAA
69643608 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
69643623 CTTCAACGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.27
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAA
Found at i:69645158 original size:21 final size:21
Alignment explanation
Indices: 69645109--69645152 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
69645099 TGTGGTTGTG
69645109 ATTAGTTTAAGTGACTAAGTT
1 ATTAGTTTAAGTGACTAAGTT
69645130 ATTAGTTTAAGTGACTAAGTT
1 ATTAGTTTAAGTGACTAAGTT
69645151 AT
1 AT
69645153 GTGTTTTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (21 bp):
ATTAGTTTAAGTGACTAAGTT
Found at i:69646416 original size:45 final size:45
Alignment explanation
Indices: 69646352--69646481 Score: 183
Period size: 45 Copynumber: 2.9 Consensus size: 45
69646342 GTTGTACAGT
* *
69646352 ATTATTCGGGCCTTGGAGCCTAGCAGGCTATAATGCTGGTGAGAC
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* * *
69646397 ATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGAT
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
* *
69646442 ATTTTTCGGGCC-TCGAGCCTAGCAGGC-AAAATGCCGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
69646482 ATAAATTCGG
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 11 0.14
44 14 0.18
45 52 0.68
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (45 bp):
ATTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:69649451 original size:43 final size:43
Alignment explanation
Indices: 69649403--69649572 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
69649393 GTTACCGAGA
*
69649403 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
* * *
69649446 TGTGATTACGTGTAAGACAATGTCTAGGACATTGGCATTGTTAA
1 TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTG-TAT
** * * * * *
69649490 T-CAATTTCGTGTAAGACCTTGTCT-GAGACAATGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTAG-GACATTGGCATTGTAT
* *
69649531 ATGTG-TTAACATGTAAGACCATATCTAGGATA-TGGCATTGTA
1 -TGTGATT-ACATGTAAGACCATGTCTAGGACATTGGCATTGTA
69649573 CGAGCTATAT
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
41 1 0.01
42 11 0.11
43 84 0.84
44 4 0.04
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT
Found at i:69649558 original size:86 final size:85
Alignment explanation
Indices: 69649413--69649571 Score: 205
Period size: 86 Copynumber: 1.9 Consensus size: 85
69649403 TGTGATTACA
* * * * *
69649413 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTGTAAGACAATGTCTAGGACAT
1 TGTAAGACCATGTCTGAGACAATGGCATCGTATTGTGATTACATGTAAGACAATATCTAGGACA-
69649478 TGGCATTGTTAATCAATTTCG
65 TGGCATTGTTAATCAATTTCG
* * *
69649499 TGTAAGACCTTGTCTGAGACAATGGCATCG-ATATGTG-TTAACATGTAAGACCATATCTAGGAT
1 TGTAAGACCATGTCTGAGACAATGGCATCGTAT-TGTGATT-ACATGTAAGACAATATCTAGGAC
69649562 ATGGCATTGT
64 ATGGCATTGT
69649572 ACGAGCTATA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
85 13 0.21
86 50 0.79
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.33
Consensus pattern (85 bp):
TGTAAGACCATGTCTGAGACAATGGCATCGTATTGTGATTACATGTAAGACAATATCTAGGACAT
GGCATTGTTAATCAATTTCG
Found at i:69653656 original size:40 final size:40
Alignment explanation
Indices: 69653587--69653811 Score: 285
Period size: 40 Copynumber: 5.7 Consensus size: 40
69653577 GGATATAACC
* * * * *
69653587 ACTCGCAC-AAGGCCGTCGGGTCTTAGCCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
69653626 CCTAGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
69653666 ACTCGCAAAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
69653706 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
69653746 ACTCGCATAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
69653786 ACTAGCACAAATGTCTTCTGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
69653812 ACCCCGTTAG
Statistics
Matches: 166, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 6 0.04
40 158 0.95
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:69661855 original size:40 final size:40
Alignment explanation
Indices: 69661763--69661932 Score: 175
Period size: 40 Copynumber: 4.3 Consensus size: 40
69661753 ACCCAATTAT
* ** * *
69661763 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
69661801 CGTCGGGTCTTAGCCTGGATATGGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
69661841 CTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
69661881 CTTCGGGACTTAGCCCGGA-ATTAATCACTAGCACAAATGT
1 CTTCGGGACTTAGCCCGGATA-TAGTCACTAGCACAAATGC
69661921 CTTCGGGACTTA
1 CTTCGGGACTTA
69661933 ACCCCGTTAG
Statistics
Matches: 106, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
38 10 0.09
39 15 0.14
40 81 0.76
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:69667683 original size:25 final size:25
Alignment explanation
Indices: 69667655--69667749 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
69667645 CTCTTTTAAT
* *
69667655 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
69667680 AACTGGGGCAAAGCACTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
69667705 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
69667730 AACTAGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
69667750 AGCATTTCCT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:69667981 original size:27 final size:27
Alignment explanation
Indices: 69667951--69668165 Score: 270
Period size: 27 Copynumber: 8.0 Consensus size: 27
69667941 GGGGCAAAAT
* * *
69667951 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
69667978 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
69668005 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
69668032 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** *
69668059 GGTAATTCTACTTTAC-AGGTTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
69668085 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
69668112 GGTAATTCTACTCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
69668139 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
69668166 AATATTTTAC
Statistics
Matches: 162, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 21 0.13
27 141 0.87
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:69668115 original size:80 final size:80
Alignment explanation
Indices: 69667951--69668166 Score: 283
Period size: 80 Copynumber: 2.7 Consensus size: 80
69667941 GGGGCAAAAT
* * * * * *
69667951 GGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTATA-AGGGTATTTCAGTATTTCTA
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTA--CTTTACAGGGTATTTCAGTAATTCTA
69668015 CCCTACAAGGGTATTTC
64 CCCTACAAGGGTATTTC
* *
69668032 GGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACTTTACAGGTTATTTC-GATAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACTTTACAGGGTATTTCAG-TAATTCTAC
*
69668096 CCTACAGGGGTATTTC
65 CCTACAAGGGTATTTC
* *
69668112 GGTAATTCTACTCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCA
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACTTTACA-GGGTATTTCA
69668167 ATATTTTACA
Statistics
Matches: 118, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
79 5 0.04
80 73 0.62
81 40 0.34
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.37
Consensus pattern (80 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACTTTACAGGGTATTTCAGTAATTCTACC
CTACAAGGGTATTTC
Found at i:69668190 original size:107 final size:106
Alignment explanation
Indices: 69667970--69668198 Score: 273
Period size: 107 Copynumber: 2.1 Consensus size: 106
69667960 ACCCCACAAG
* * * *
69667970 GGTATCTCGGTAATTCTACCCTATAAGGGTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGT
1 GGTATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGT
* ** **
69668035 AATTCTACCCTATAGGGGTATTTCGGTAATTCTACTTTACA
66 AATTCTACCCTACAGGGGTATTTCAATAATTCTACAATACA
* * * *
69668076 GGTTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACTCTACAGGGGTATTTCGG
1 GG-TATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGG
* *
69668141 TAATTCTACCTTACAGGGGTATTTCAAT-ATTTTACAA-ATCGA
65 TAATTCTACCCTACAGGGGTATTTCAATAATTCTACAATA-C-A
69668183 GAGTATTTCGATAATT
1 G-GTATTTCGATAATT
69668199 TCACAAATCA
Statistics
Matches: 104, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
105 1 0.01
106 9 0.09
107 93 0.89
108 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.38
Consensus pattern (106 bp):
GGTATTTCGATAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGT
AATTCTACCCTACAGGGGTATTTCAATAATTCTACAATACA
Found at i:69668216 original size:107 final size:107
Alignment explanation
Indices: 69667998--69668252 Score: 241
Period size: 107 Copynumber: 2.4 Consensus size: 107
69667988 CCCTATAAGG
* * * * * **
69667998 GTATTTCAGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTA
1 GTATTTCGGTAATTCTACACTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATA
** ** *
69668063 ATTCTACTTTACAGGTTATTTCGATAATTCTACCCTACAGGG
66 ATTCTACAATACAGGTTATTTCGATAATTCTACAATACAGGA
* *
69668105 GTATTTCGGTAATTCTACTCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAAT-
1 GTATTTCGGTAATTCTACACTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATA
*
69668169 ATTTTACAA-ATCGAGAG-TATTTCGATAATT-TCACAA-ATCAGGA
66 ATTCTACAATA-C-AG-GTTATTTCGATAATTCT-ACAATA-CAGGA
* * *** *
69668212 GTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATT
1 GTATTTCGGTAATTCTACACTACAGGGGTATTTCGGTAATT
69668253 TTACAAACCA
Statistics
Matches: 122, Mismatches: 21, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
105 1 0.01
106 9 0.07
107 111 0.91
108 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (107 bp):
GTATTTCGGTAATTCTACACTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATA
ATTCTACAATACAGGTTATTTCGATAATTCTACAATACAGGA
Found at i:69668265 original size:107 final size:106
Alignment explanation
Indices: 69668127--69668333 Score: 240
Period size: 107 Copynumber: 1.9 Consensus size: 106
69668117 TTCTACTCTA
** *
69668127 CAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAAT-ATTTTACAAATCGAGAGTATTT
1 CAGGGGTATTTCGGTAATTCTACCAAACAGGGGTATTTCAATAATTTTACAAA-CCAG-GTATTT
69668191 CGATAATTTCACAAATC-AGGAGTATTTTGGTAATTTTACAAGC
64 CGATAATTTCACAAATCGAGG-GTATTTTGGTAATTTTACAAGC
* * * * *
69668234 CAGGGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTAGTAATTTTACAAACCAGGTATTTT
1 CAGGGGTATTTCGGTAATTCTACCAAA-CAGGGGTATTTCAATAATTTTACAAACCAGGTATTTC
* * ** *
69668298 GGTAATTTTACTGATCGAGGGTATTTTTGTAATTTT
65 GATAATTTCACAAATCGAGGGTATTTTGGTAATTTT
69668334 GTAAACTAAG
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
106 35 0.42
107 39 0.46
108 10 0.12
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.40
Consensus pattern (106 bp):
CAGGGGTATTTCGGTAATTCTACCAAACAGGGGTATTTCAATAATTTTACAAACCAGGTATTTCG
ATAATTTCACAAATCGAGGGTATTTTGGTAATTTTACAAGC
Found at i:69668324 original size:79 final size:81
Alignment explanation
Indices: 69668169--69668360 Score: 210
Period size: 79 Copynumber: 2.4 Consensus size: 81
69668159 GTATTTCAAT
* * ** * *
69668169 ATTTTACAAATCGAGAGTATTTCGATAATTTCACAAATCAGGAGTATTTTGGTAATTTTACAAGC
1 ATTTTACAAACCAAGAGTATTTTAATAATTTTACAAACCAGGAGTATTTTGGTAATTTTACAAGC
69668234 CAGGGGTATTTTGGTA
66 CAGGGGTATTTTGGTA
* * * * *
69668250 ATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACCA-G-GTATTTTGGTAATTTTACTGAT
1 ATTTTACAAACCAAGAGTATTTTAATAATTTTACAAACCAGGAGTATTTTGGTAATTTTAC-AAG
* *
69668313 CGA-GGGTATTTTTGTA
65 CCAGGGGTATTTTGGTA
** *
69668329 ATTTTGTAAACTAAGAGTATTTTAATAATTTT
1 ATTTTACAAACCAAGAGTATTTTAATAATTTT
69668361 GTAAATCGAG
Statistics
Matches: 91, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 56 0.62
80 4 0.04
81 31 0.34
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (81 bp):
ATTTTACAAACCAAGAGTATTTTAATAATTTTACAAACCAGGAGTATTTTGGTAATTTTACAAGC
CAGGGGTATTTTGGTA
Found at i:69668329 original size:27 final size:26
Alignment explanation
Indices: 69668169--69668333 Score: 170
Period size: 27 Copynumber: 6.2 Consensus size: 26
69668159 GTATTTCAAT
* * * *
69668169 ATTTTACAAATCGAGAGTATTTCGATA
1 ATTTTACAAA-CCAGGGTATTTTGGTA
* *
69668196 ATTTCACAAATCAGGAGTATTTTGGTA
1 ATTTTACAAACCAGG-GTATTTTGGTA
*
69668223 ATTTTACAAGCCAGGGGTATTTTGGTA
1 ATTTTACAAACCA-GGGTATTTTGGTA
*
69668250 ATTTTACAAACCAGGGGTATTTTAGTA
1 ATTTTACAAACCA-GGGTATTTTGGTA
69668277 ATTTTACAAACCA-GGTATTTTGGTA
1 ATTTTACAAACCAGGGTATTTTGGTA
* * * *
69668302 ATTTTACTGATCGAGGGTATTTTTGTA
1 ATTTTAC-AAACCAGGGTATTTTGGTA
69668329 ATTTT
1 ATTTT
69668334 GTAAACTAAG
Statistics
Matches: 118, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
25 18 0.15
26 5 0.04
27 93 0.79
28 2 0.02
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (26 bp):
ATTTTACAAACCAGGGTATTTTGGTA
Found at i:69668384 original size:27 final size:27
Alignment explanation
Indices: 69668362--69668750 Score: 564
Period size: 27 Copynumber: 14.4 Consensus size: 27
69668352 AATAATTTTG
** *
69668362 TAAATCGAGGGTAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
69668389 TAAATCGAGGGTAAAATGGTAATTC-A
1 TAAATCGAGGGTAAAATGGTAATTCTA
***
69668415 GTAAATCGAGGGTAAAACAATAATTCTA
1 -TAAATCGAGGGTAAAATGGTAATTCTA
* *
69668443 TAAATTGAGCGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* *
69668470 TAAATCAAGGGTAAAATGGTAATTCTT
1 TAAATCGAGGGTAAAATGGTAATTCTA
69668497 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* * *
69668524 TAAATTGTGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
69668551 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
69668578 TCAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
69668605 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
69668632 TAAATCGAGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
69668659 TAAATCGAGGGTAAAATTGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
69668686 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* *
69668713 TAAATCGAGGGTAAAACGGTAATTTTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* *
69668740 CAAATTGAGGG
1 TAAATCGAGGG
69668751 CATTTCAGTA
Statistics
Matches: 325, Mismatches: 35, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
27 324 1.00
28 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
TAAATCGAGGGTAAAATGGTAATTCTA
Found at i:69671370 original size:43 final size:42
Alignment explanation
Indices: 69671226--69671370 Score: 148
Period size: 43 Copynumber: 3.4 Consensus size: 42
69671216 GGTTACCAAG
* * *
69671226 ATGTGATTACATGTAAGACCTTGTCTGGGACATTGGCATTGT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGT
*
69671268 ATTGTGATTACATGTAAGACCATGTCTAGAACATTGGCATCGTT
1 A-TGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCG-T
* * * * * *
69671312 AAT-CGATTTCGTGTAAGACCATGTCTAGGATAGTGGTATCGAT
1 -ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCG-T
*
69671355 ATGTGATAACATGTAA
1 ATGTGATTACATGTAA
69671371 AACAATATAT
Statistics
Matches: 83, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
42 3 0.04
43 77 0.93
44 2 0.02
45 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGT
Found at i:69672333 original size:13 final size:13
Alignment explanation
Indices: 69672315--69672346 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
69672305 GAAAAGGGTG
69672315 GCAAATTGGGTTT
1 GCAAATTGGGTTT
69672328 GCAAATTGGGTTT
1 GCAAATTGGGTTT
69672341 GCAAAT
1 GCAAAT
69672347 AGCCTATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.28, C:0.09, G:0.28, T:0.34
Consensus pattern (13 bp):
GCAAATTGGGTTT
Found at i:69674000 original size:43 final size:44
Alignment explanation
Indices: 69673952--69674099 Score: 151
Period size: 43 Copynumber: 3.4 Consensus size: 44
69673942 TACCGAGATG
69673952 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATATT
* * * * *
69673995 TGATTACGTGTAAGACAATGTTTAGGACATTGGCATTGT-TAAT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATATT
* * * * * * *
69674038 CGATTTCGTGTAAGACCCTGTCTGGGACAATGGCATCG-ATATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATATT
69674081 TG-TTAACATGTAAGACCAT
1 TGATT-ACATGTAAGACCAT
69674100 ATCCAGGATA
Statistics
Matches: 83, Mismatches: 19, Indels: 6
0.77 0.18 0.06
Matches are distributed among these distances:
42 3 0.04
43 80 0.96
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATATT
Found at i:69681145 original size:43 final size:43
Alignment explanation
Indices: 69681078--69681224 Score: 145
Period size: 43 Copynumber: 3.4 Consensus size: 43
69681068 GTTACTGAGA
* * *
69681078 TGTGGTTACATGTAAGACCTTGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
** * *
69681121 TGTGATTACATGTAAGACCATGTCTAAGACATTGACATCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* * * *
69681165 T-CGATTTCGTGTAAGACCATGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
**
69681206 ATGTGACAACATGTAAGAC
1 -TGTGATTACATGTAAGAC
69681225 AATATATGGG
Statistics
Matches: 81, Mismatches: 20, Indels: 6
0.76 0.19 0.06
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 76 0.94
44 3 0.04
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:69682661 original size:31 final size:31
Alignment explanation
Indices: 69682626--69682687 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
69682616 ATGTTAGATT
69682626 GATATTTATGTGAAATTGAATCATGTATGAG
1 GATATTTATGTGAAATTGAATCATGTATGAG
69682657 GATATTTATGTGAAATTGAATCATGTATGAG
1 GATATTTATGTGAAATTGAATCATGTATGAG
69682688 AAATGGATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.39
Consensus pattern (31 bp):
GATATTTATGTGAAATTGAATCATGTATGAG
Found at i:69685798 original size:20 final size:20
Alignment explanation
Indices: 69685773--69685813 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
69685763 TGGCAAGTAT
69685773 TCCTCTCTTATTGGCTAAGG
1 TCCTCTCTTATTGGCTAAGG
69685793 TCCTCTCTTATTGGCTAAGG
1 TCCTCTCTTATTGGCTAAGG
69685813 T
1 T
69685814 TGGCTGAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.15, C:0.24, G:0.20, T:0.41
Consensus pattern (20 bp):
TCCTCTCTTATTGGCTAAGG
Found at i:69686434 original size:29 final size:28
Alignment explanation
Indices: 69686359--69686480 Score: 104
Period size: 29 Copynumber: 4.3 Consensus size: 28
69686349 ATAATGTGGT
* *
69686359 TTGGGCCGGATGGGCCATATAAATGAG-C
1 TTGGGCCTGATGGG-CATATAAATGAGAA
* * * * *
69686387 TTGGGCCTAATATGCCATATGAATGCGAA
1 TTGGGCCTGAT-GGGCATATAAATGAGAA
*
69686416 TTGGGCCTGATGGGACATATAAATGTGAA
1 TTGGGCCTGATGGG-CATATAAATGAGAA
* *
69686445 TTGGGTCAGATGGGCAATATAAATGAG-A
1 TTGGGCCTGATGGGC-ATATAAATGAGAA
69686473 TTGGGCCT
1 TTGGGCCT
69686481 AGTGGGTCAT
Statistics
Matches: 73, Mismatches: 17, Indels: 8
0.74 0.17 0.08
Matches are distributed among these distances:
28 28 0.38
29 45 0.62
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (28 bp):
TTGGGCCTGATGGGCATATAAATGAGAA
Found at i:69690609 original size:16 final size:16
Alignment explanation
Indices: 69690588--69690630 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
69690578 GTAGATCAAT
69690588 AAAAGCTGAAATACCG
1 AAAAGCTGAAATACCG
*
69690604 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATACCG
*
69690620 AAAAGTTGAAA
1 AAAAGCTGAAA
69690631 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.51, C:0.14, G:0.21, T:0.14
Consensus pattern (16 bp):
AAAAGCTGAAATACCG
Found at i:69690885 original size:28 final size:28
Alignment explanation
Indices: 69690862--69690986 Score: 132
Period size: 28 Copynumber: 4.4 Consensus size: 28
69690852 ATTTGGGTCG
*
69690862 GATGGGTCATATAAATGAGATTGGGCC-
1 GATGGGCCATATAAATGAGATTGGGCCA
** *
69690889 TCTGGGCCATATAAATGCGAATTGGGCCTA
1 GATGGGCCATATAAATGAG-ATTGGGCC-A
69690919 -ATGGGCCATATAAACATGA-ATTGGGCCA
1 GATGGGCCATAT-AA-ATGAGATTGGGCCA
*
69690947 GATGGGCCATATAAATAAGATTGGGCCTA
1 GATGGGCCATATAAATGAGATTGGGCC-A
69690976 -ATGGGCCATAT
1 GATGGGCCATAT
69690987 GCATGTATGT
Statistics
Matches: 83, Mismatches: 7, Indels: 15
0.79 0.07 0.14
Matches are distributed among these distances:
27 18 0.22
28 30 0.36
29 30 0.36
30 2 0.02
31 3 0.04
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (28 bp):
GATGGGCCATATAAATGAGATTGGGCCA
Found at i:69690929 original size:29 final size:28
Alignment explanation
Indices: 69690863--69690986 Score: 144
Period size: 29 Copynumber: 4.4 Consensus size: 28
69690853 TTTGGGTCGG
* *
69690863 ATGGGTCATATAAATGAGATTGGGCCT-
1 ATGGGCCATATAAATAAGATTGGGCCTA
* **
69690890 CTGGGCCATATAAATGCGAATTGGGCCTA
1 ATGGGCCATATAAATAAG-ATTGGGCCTA
* *
69690919 ATGGGCCATATAAACATGAATTGGGCC-A
1 ATGGGCCATATAAATAAG-ATTGGGCCTA
69690947 GATGGGCCATATAAATAAGATTGGGCCTA
1 -ATGGGCCATATAAATAAGATTGGGCCTA
69690976 ATGGGCCATAT
1 ATGGGCCATAT
69690987 GCATGTATGT
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
27 15 0.18
28 29 0.35
29 40 0.48
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (28 bp):
ATGGGCCATATAAATAAGATTGGGCCTA
Found at i:69703627 original size:43 final size:43
Alignment explanation
Indices: 69703577--69703913 Score: 375
Period size: 43 Copynumber: 8.0 Consensus size: 43
69703567 TATGTGTTCT
* *
69703577 CGTGTAAGACCACGTTTGGGACGTTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTA
* ** * * * *
69703620 CGTGTAAGACCATGTCTAAGATATCGACATCG-TATTTGATT-
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTA
* *
69703661 TGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGA-TGTTGGCATCGATATGTGATTA
* *
69703704 CATGTAAGACCACGTCTGGGATGTTGGCATCAATATGTGATTA
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTA
** *
69703747 TATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTA
*
69703790 C--GT--GACCACGTCTAGGATGTTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTA
*
69703829 CGTGTAAGACCACGTCTGGGATGTTGGCATCTATATGTGATTA
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTA
* * * *** *
69703872 TGGGTAAGACCACGTTTAATATGTTGGCATCGGTATGTGATT
1 CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATT
69703914 CTGGTTTGTG
Statistics
Matches: 246, Mismatches: 38, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
39 35 0.14
41 26 0.11
42 17 0.07
43 167 0.68
44 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGATGTTGGCATCGATATGTGATTA
Found at i:69703835 original size:82 final size:84
Alignment explanation
Indices: 69703577--69703913 Score: 382
Period size: 82 Copynumber: 4.0 Consensus size: 84
69703567 TATGTGTTCT
* *
69703577 CGTGTAAGACCACGTTTGGGACGTTGGCATCGATATGTGATTACGTGTAAGACCATGTCTAAGAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTAC-TGT-AGACCACGTCTAAGAT
* * * *
69703642 ATCGACATCG-TATTTGATT-
64 GTTGGCATCGATATGTGATTA
* **
69703661 TGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGATTACATGTAAGACCACGTCTGGG
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTAC-TGT-AGACCACGTCTAAG
*
69703724 ATGTTGGCATCAATATGTGATTA
62 ATGTTGGCATCGATATGTGATTA
** *
69703747 TATGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTAC-GT-GACCACGTCTAGGATGT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACTGTAGACCACGTCTAAGATGT
69703810 TGGCATCGATATGTGATTA
66 TGGCATCGATATGTGATTA
* * * *
69703829 CGTGTAAGACCACGTCTGGGATGTTGGCATCTATATGTGATTA-TGGGTAAGACCACGTTTAATA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACT--GT-AGACCACGTCTAAGA
*
69703893 TGTTGGCATCGGTATGTGATT
63 TGTTGGCATCGATATGTGATT
69703914 CTGGTTTGTG
Statistics
Matches: 220, Mismatches: 22, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
82 73 0.33
83 1 0.00
84 65 0.30
85 10 0.05
86 70 0.32
87 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (84 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACTGTAGACCACGTCTAAGATGT
TGGCATCGATATGTGATTA
Found at i:69703850 original size:125 final size:125
Alignment explanation
Indices: 69703579--69703913 Score: 372
Period size: 125 Copynumber: 2.7 Consensus size: 125
69703569 TGTGTTCTCG
* * * * * **
69703579 TGTAAGACCACGTTTGGGACGTTGGCATCGATATGTGATTA-CGTGTAAGACCATGTCTAAGATA
1 TGTAAGACCACGTCTGGGATGTTGGCATCAATATGTGATTATAG-GTAAGACCACGTCTAAGACG
* * * ** * *
69703643 TCGACATCG-TATTTGATTTGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGATTAC
65 TTGGCATCGATATGTGA-TTACGT--GACCAC-GTCTAGGA-TGTTGGCATCGATATGTGATTAC
69703705 A
125 A
* **
69703706 TGTAAGACCACGTCTGGGATGTTGGCATCAATATGTGATTATATGTAAGACCACGTCTGGGACGT
1 TGTAAGACCACGTCTGGGATGTTGGCATCAATATGTGATTATAGGTAAGACCACGTCTAAGACGT
*
69703771 TGGCATCGATATGTGATTACGTGACCACGTCTAGGATGTTGGCATCGATATGTGATTACG
66 TGGCATCGATATGTGATTACGTGACCACGTCTAGGATGTTGGCATCGATATGTGATTACA
* * * * *
69703831 TGTAAGACCACGTCTGGGATGTTGGCATCTATATGTGATTATGGGTAAGACCACGTTTAATATGT
1 TGTAAGACCACGTCTGGGATGTTGGCATCAATATGTGATTATAGGTAAGACCACGTCTAAGACGT
*
69703896 TGGCATCGGTATGTGATT
66 TGGCATCGATATGTGATT
69703914 CTGGTTTGTG
Statistics
Matches: 177, Mismatches: 27, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
124 1 0.01
125 105 0.59
126 1 0.01
127 64 0.36
128 6 0.03
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (125 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCAATATGTGATTATAGGTAAGACCACGTCTAAGACGT
TGGCATCGATATGTGATTACGTGACCACGTCTAGGATGTTGGCATCGATATGTGATTACA
Found at i:69703965 original size:56 final size:56
Alignment explanation
Indices: 69703875--69704050 Score: 237
Period size: 56 Copynumber: 3.1 Consensus size: 56
69703865 GTGATTATGG
* * * *
69703875 GTAAGACCACGTTTAATATGTTGGCATCGGTATGTGATTCTGGTTTGTGTGTACGA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATGTGTGTACGA
* * * * *
69703931 GTAAGACCACGTTTAATACATTGGCATCGATATGTAATTTTGATATGTGTGTGCAA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATGTGTGTACGA
* *
69703987 GTAAGACCACGTTTAATACGTTGGCATCGATA-GATGATTCCGATATGTGTTTACGA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATG-TGATTCTGATATGTGTGTACGA
69704043 GTAAGACC
1 GTAAGACC
69704051 CTATCTGAGA
Statistics
Matches: 103, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
55 1 0.01
56 102 0.99
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.34
Consensus pattern (56 bp):
GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATGTGTGTACGA
Found at i:69707502 original size:71 final size:71
Alignment explanation
Indices: 69707418--69707581 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
69707408 CGATTTGTCT
69707418 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69707483 CTTTCA
66 CTTTCA
69707489 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
69707554 CTTTCA
66 CTTTCA
69707560 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
69707582 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:69707619 original size:71 final size:70
Alignment explanation
Indices: 69707418--69707615 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
69707408 CGATTTGTCT
* * * *
69707418 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69707483 CTTTCA
65 CTTTCA
* * * *
69707489 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
69707554 CTTTCA
65 CTTTCA
* *
69707560 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
69707616 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:69712395 original size:34 final size:34
Alignment explanation
Indices: 69712320--69712407 Score: 113
Period size: 34 Copynumber: 2.6 Consensus size: 34
69712310 TCTGGGTCTG
* * * * *
69712320 AGCCCATATCAATAACAGTAGTAGTCTGGGCCTT
1 AGCCCATTTCAGTAATAGTAGCAGTCTAGGCCTT
* *
69712354 GGCCCATTTCAGTAATAGTAGCAGTCTAGGCTTT
1 AGCCCATTTCAGTAATAGTAGCAGTCTAGGCCTT
69712388 AGCCCATTTCAGTAATAGTA
1 AGCCCATTTCAGTAATAGTA
69712408 ATCAGGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 46 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (34 bp):
AGCCCATTTCAGTAATAGTAGCAGTCTAGGCCTT
Found at i:69712704 original size:23 final size:23
Alignment explanation
Indices: 69712678--69712727 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
69712668 ACCCCAAGCA
69712678 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
69712701 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
69712724 ATGC
1 ATGC
69712728 TCAAATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:69712843 original size:28 final size:27
Alignment explanation
Indices: 69712806--69712876 Score: 106
Period size: 28 Copynumber: 2.6 Consensus size: 27
69712796 TACCCTACAG
* *
69712806 GGGTATTTCGGTCATTCTACCTTATGAA
1 GGGTATTTCGATCATTCTACCCTATG-A
*
69712834 GGGTATTTCGATCATTCTACCCTATGG
1 GGGTATTTCGATCATTCTACCCTATGA
69712861 GGGTATTTCGATCATT
1 GGGTATTTCGATCATT
69712877 TTATCACATA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 16 0.40
28 24 0.60
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGATCATTCTACCCTATGA
Found at i:69712872 original size:27 final size:27
Alignment explanation
Indices: 69712763--69712876 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
69712753 AACAAATCTT
* * * *
69712763 TCATTTTACCTTATCGGGGTATTAC-A
1 TCATTCTACCCTATGGGGGTATTTCGA
* ** *
69712789 GTCATTTTACCCTACAGGGGTATTTCGG
1 -TCATTCTACCCTATGGGGGTATTTCGA
* *
69712817 TCATTCTACCTTATGAAGGGTATTTCGA
1 TCATTCTACCCTATG-GGGGTATTTCGA
69712845 TCATTCTACCCTATGGGGGTATTTCGA
1 TCATTCTACCCTATGGGGGTATTTCGA
69712872 TCATT
1 TCATT
69712877 TTATCACATA
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
27 48 0.67
28 24 0.33
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.39
Consensus pattern (27 bp):
TCATTCTACCCTATGGGGGTATTTCGA
Found at i:69712947 original size:53 final size:54
Alignment explanation
Indices: 69712871--69712994 Score: 171
Period size: 53 Copynumber: 2.3 Consensus size: 54
69712861 GGGTATTTCG
* *
69712871 ATCATTTTATCACATAAAGGCAAAATTGTCATTTTATCACATAAGGGCAAAATC
1 ATCATTTTATCACATAAAGGCAAAATCGTCATTTTATCACATAAGGGAAAAATC
* * *
69712925 GTCA-TTTATCACAT-GAGAGCAAAATCGTCATTTTATCACATGAGGGAAAAATC
1 ATCATTTTATCACATAAAG-GCAAAATCGTCATTTTATCACATAAGGGAAAAATC
*
69712978 ATTATTTTATCACATAA
1 ATCATTTTATCACATAA
69712995 GGGTTCAGGT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
52 2 0.03
53 44 0.75
54 13 0.22
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (54 bp):
ATCATTTTATCACATAAAGGCAAAATCGTCATTTTATCACATAAGGGAAAAATC
Found at i:69712997 original size:27 final size:27
Alignment explanation
Indices: 69712872--69712997 Score: 173
Period size: 27 Copynumber: 4.7 Consensus size: 27
69712862 GGTATTTCGA
* *
69712872 TCATTTTATCACATAAAGGCAAAATTG
1 TCATTTTATCACATAAGGGCAAAATCG
69712899 TCATTTTATCACATAAGGGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
69712926 TCA-TTTATCACATGAGAGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* * *
69712952 TCATTTTATCACATGAGGGAAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCG
*
69712979 TTATTTTATCACATAAGGG
1 TCATTTTATCACATAAGGG
69712998 TTCAGGTACG
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 24 0.27
27 65 0.73
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGCAAAATCG
Found at i:69716355 original size:24 final size:24
Alignment explanation
Indices: 69716280--69716356 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
69716270 AAAGGCTGTC
69716280 AGGAGAAGATTTAGGAGCTGAT-A
1 AGGAGAAGATTTAGGAGCTGATCA
* * * * *
69716303 AGGGAGAGGACTTAGGAAC-AAACAA
1 A-GGAGAAGATTTAGGAGCTGATC-A
69716328 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGATCA
69716352 AGGAG
1 AGGAG
69716357 TAGGAGTTGG
Statistics
Matches: 40, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
23 2 0.05
24 34 0.85
25 4 0.10
ACGTcount: A:0.42, C:0.08, G:0.35, T:0.16
Consensus pattern (24 bp):
AGGAGAAGATTTAGGAGCTGATCA
Found at i:69718045 original size:33 final size:34
Alignment explanation
Indices: 69717968--69718048 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
69717958 CTATGGGCGT
*
69717968 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
69718002 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
69718035 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
69718049 GGGCTTAGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 13 0.34
33 14 0.37
34 11 0.29
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:69718053 original size:32 final size:30
Alignment explanation
Indices: 69717968--69718061 Score: 71
Period size: 32 Copynumber: 2.9 Consensus size: 30
69717958 CTATGGGCGT
* *
69717968 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT---GGGCT-TGGCCCAGTTC
* * *
69718002 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCT-TGGCCCAGT-TC
69718035 ACTGTTATCTGAATGGGCTTAGGCCCA
1 ACTGTTATCTGAATGGGCTT-GGCCCA
69718062 ATGGGCTTGA
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
31 1 0.02
32 26 0.54
33 10 0.21
34 9 0.19
35 2 0.04
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.28
Consensus pattern (30 bp):
ACTGTTATCTGAATGGGCTTGGCCCAGTTC
Found at i:69721712 original size:34 final size:34
Alignment explanation
Indices: 69721674--69721771 Score: 106
Period size: 34 Copynumber: 2.9 Consensus size: 34
69721664 GCAAATGCAT
* * *
69721674 TCTGGGCCTAAGCCCATATCAGTAACAGTAGTAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
* * *
69721708 TCTGGGACTTAGCCCATTTTAGTAACAATAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
* * * *
69721742 TTTGGTCTTTAGCCCATTTCAGTAATAGTA
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTA
69721772 ATCAGTGCAG
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
34 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (34 bp):
TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
Found at i:69722205 original size:27 final size:27
Alignment explanation
Indices: 69722157--69722262 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
69722147 GAACAAATCT
* ** * * *
69722157 GTCAATTTACCTTACCGAGGTATTATA
1 GTCATTTTACCTTATAGGGGTATTTTG
69722184 GTCATTTTACCTTATAGGGGTATTTTG
1 GTCATTTTACCTTATAGGGGTATTTTG
* * *
69722211 GTCATTCTACCATATGGGGGTATTTTG
1 GTCATTTTACCTTATAGGGGTATTTTG
* *
69722238 GTCATTTTACCCTATAAGGGTATTT
1 GTCATTTTACCTTATAGGGGTATTT
69722263 CGATCAGTTT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCTTATAGGGGTATTTTG
Found at i:69722273 original size:27 final size:27
Alignment explanation
Indices: 69722251--69722313 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
69722241 ATTTTACCCT
69722251 ATAAGGGTATTTCGATCAGTTTATCAC
1 ATAAGGGTATTTCGATCAGTTTATCAC
** *
69722278 ATAAGGGTAAAATCG-TCATTTTATCAC
1 ATAAGGGT-ATTTCGATCAGTTTATCAC
69722305 ATAAGGGTA
1 ATAAGGGTA
69722314 ACATCGTCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 1 0.03
27 27 0.84
28 4 0.12
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (27 bp):
ATAAGGGTATTTCGATCAGTTTATCAC
Found at i:69722286 original size:54 final size:54
Alignment explanation
Indices: 69722175--69722313 Score: 120
Period size: 54 Copynumber: 2.6 Consensus size: 54
69722165 ACCTTACCGA
* * * * * **
69722175 GGTATTATAGTCATTTTACCTTATAGGGGTATTTTGGTCATTCTACCATATGGG
1 GGTATTATAGTCATTTTACCCTATAAGGGTATTTCGATCATTCTACCACATAAG
* * *
69722229 GGTATTTTGGTCATTTTACCCTATAAGGGTATTTCGATCAGTT-TATCACATAAG
1 GGTATTATAGTCATTTTACCCTATAAGGGTATTTCGATCA-TTCTACCACATAAG
** * *
69722283 GGTAAAATCGTCATTTTATCAC-ATAAGGGTA
1 GGTATTATAGTCATTTTA-CCCTATAAGGGTA
69722314 ACATCGTCAT
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
54 64 0.94
55 4 0.06
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.40
Consensus pattern (54 bp):
GGTATTATAGTCATTTTACCCTATAAGGGTATTTCGATCATTCTACCACATAAG
Found at i:69722313 original size:81 final size:80
Alignment explanation
Indices: 69722238--69722474 Score: 307
Period size: 81 Copynumber: 2.9 Consensus size: 80
69722228 GGGTATTTTG
* * * *
69722238 GTCATTTTACCCTATAAGGG-TATTTCGATCAGTTTATCACATAAGGGTAAAATCGTCATTTTAT
1 GTCATTTTACCC-ATAAGGGCAAATTCG-TCATTTTATCACATGAGGGTAAAATCGTCATTTTAT
*
69722302 CACATAAGGGTAACATC
64 CACATAAGGGTAAAATC
** *
69722319 GTCATTTTATCAAATAAGGGCAAAATT-GTCATTTTATCACATGAGGGAAAAATCGTCATTTTAT
1 GTCATTTTA-CCCATAAGGGC-AAATTCGTCATTTTATCACATGAGGGTAAAATCGTCATTTTAT
*
69722383 CACATAAGGGCAAAATC
64 CACATAAGGGTAAAATC
* *
69722400 GTCATTTTATCACATAAGGGCAAAATCGTCATTTTATCACATGAGGGTAAAATCGTCATTTTATC
1 GTCATTTTA-CCCATAAGGGCAAATTCGTCATTTTATCACATGAGGGTAAAATCGTCATTTTATC
*
69722465 ACATGAGGGT
65 ACATAAGGGT
69722475 TCAGGTACGC
Statistics
Matches: 138, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
80 4 0.03
81 129 0.93
82 2 0.01
83 3 0.02
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (80 bp):
GTCATTTTACCCATAAGGGCAAATTCGTCATTTTATCACATGAGGGTAAAATCGTCATTTTATCA
CATAAGGGTAAAATC
Found at i:69722314 original size:27 final size:27
Alignment explanation
Indices: 69722270--69722474 Score: 320
Period size: 27 Copynumber: 7.6 Consensus size: 27
69722260 TTTCGATCAG
69722270 TTTATCACATAAGGGTAAAATCGTCAT
1 TTTATCACATAAGGGTAAAATCGTCAT
*
69722297 TTTATCACATAAGGGTAACATCGTCAT
1 TTTATCACATAAGGGTAAAATCGTCAT
* * *
69722324 TTTATCAAATAAGGGCAAAATTGTCAT
1 TTTATCACATAAGGGTAAAATCGTCAT
* *
69722351 TTTATCACATGAGGGAAAAATCGTCAT
1 TTTATCACATAAGGGTAAAATCGTCAT
*
69722378 TTTATCACATAAGGGCAAAATCGTCAT
1 TTTATCACATAAGGGTAAAATCGTCAT
*
69722405 TTTATCACATAAGGGCAAAATCGTCAT
1 TTTATCACATAAGGGTAAAATCGTCAT
*
69722432 TTTATCACATGAGGGTAAAATCGTCAT
1 TTTATCACATAAGGGTAAAATCGTCAT
*
69722459 TTTATCACATGAGGGT
1 TTTATCACATAAGGGT
69722475 TCAGGTACGC
Statistics
Matches: 165, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 165 1.00
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (27 bp):
TTTATCACATAAGGGTAAAATCGTCAT
Found at i:69726430 original size:93 final size:93
Alignment explanation
Indices: 69726318--69726489 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69726308 GCCCATAAGT
* *
69726318 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69726383 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
69726411 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
69726476 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
69726490 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69726485 original size:46 final size:46
Alignment explanation
Indices: 69726310--69726485 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
69726300 TGTAACCCGC
* * *
69726310 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
69726356 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
69726406 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
69726449 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69726486 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:69740839 original size:27 final size:28
Alignment explanation
Indices: 69740783--69740852 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
69740773 AAATTTGTAC
69740783 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
69740811 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
69740838 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
69740853 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:69740863 original size:27 final size:27
Alignment explanation
Indices: 69740783--69740864 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
69740773 AAATTTGTAC
* *
69740783 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
69740811 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
69740838 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
69740865 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:69747020 original size:27 final size:28
Alignment explanation
Indices: 69746961--69747029 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
69746951 ATGGCTCACC
69746961 CGCACACTTAGTGCTATATAGATCAACT
1 CGCACACTTAGTGCTATATAGATCAACT
*
69746989 CGCACACTTAGTGC-ATATATATCAAACT
1 CGCACACTTAGTGCTATATAGATC-AACT
69747017 -GCACACTTAGTGC
1 CGCACACTTAGTGC
69747030 GTGTACAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAGATCAACT
Found at i:69754662 original size:28 final size:28
Alignment explanation
Indices: 69754630--69754728 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
69754620 GCCATAAGCC
*
69754630 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
69754658 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
69754686 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
69754715 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69754729 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:69757634 original size:16 final size:16
Alignment explanation
Indices: 69757613--69757644 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
69757603 AAATTGAATA
69757613 AAAATCACTTTACGAG
1 AAAATCACTTTACGAG
69757629 AAAATCACTTTACGAG
1 AAAATCACTTTACGAG
69757645 CTTAGGGGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (16 bp):
AAAATCACTTTACGAG
Found at i:69758566 original size:54 final size:54
Alignment explanation
Indices: 69758492--69758627 Score: 236
Period size: 54 Copynumber: 2.5 Consensus size: 54
69758482 ATGTCGTTGT
* * *
69758492 AGGGGATTTAGCCTGGACTGGTAATCTCGACAATACCCTATGAGTTTATGTTAC
1 AGGGGATTTAGCCTGGACTGGTAATCCCGAAAACACCCTATGAGTTTATGTTAC
*
69758546 AGGGGATTTAGCCTAGACTGGTAATCCCGAAAACACCCTATGAGTTTATGTTAC
1 AGGGGATTTAGCCTGGACTGGTAATCCCGAAAACACCCTATGAGTTTATGTTAC
69758600 AGGGGATTTAGCCTGGACTGGTAATCCC
1 AGGGGATTTAGCCTGGACTGGTAATCCC
69758628 ACTATAAGAA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 77 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (54 bp):
AGGGGATTTAGCCTGGACTGGTAATCCCGAAAACACCCTATGAGTTTATGTTAC
Found at i:69762662 original size:2 final size:2
Alignment explanation
Indices: 69762655--69762690 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
69762645 TTAACTTGCG
69762655 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
69762691 CAAGTATGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:69782366 original size:46 final size:45
Alignment explanation
Indices: 69782294--69782420 Score: 159
Period size: 46 Copynumber: 2.8 Consensus size: 45
69782284 GGTGGTATGT
* *
69782294 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCA-CA-ACAT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATCAGACAA
*
69782338 GAGTACCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACAA
1 GAG--CCAGTGTAAGACATGTCTGGGACATGCATCGGCA-TCAGACAA
*
69782386 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACATGTCTGGGACAT-GCATCG
69782421 ACACCGATAA
Statistics
Matches: 73, Mismatches: 4, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
44 3 0.04
45 2 0.03
46 55 0.75
47 7 0.10
48 6 0.08
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.20
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCAGACAA
Found at i:69782459 original size:49 final size:48
Alignment explanation
Indices: 69782294--69782520 Score: 182
Period size: 49 Copynumber: 4.8 Consensus size: 48
69782284 GGTGGTATGT
* *
69782294 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-A-ACATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACGATACATGA
* * *
69782340 GTA-CCAGTGTAAGACATGTCTGGGACATGCATCG-GCATTGAGACA--A
1 G-AGCCAGTGTAAGACATGTCTGGGACATGCATCGACCA-CGATACATGA
* *
69782386 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCGA-CACCGATAAATGA
1 GAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGACCA-CGATACATGA
* * * * *
69782435 GAGCCAGTGTAAGACCTGTTTGGGATATCGCATC-AGCCTCGATATATGA
1 GAGCCAGTGTAAGACATGTCTGGGACAT-GCATCGA-CCACGATACATGA
* * * * *
69782484 AAGTCAGTGTAAGACCTGTCTCGGACACGGCATCGAC
1 GAGCCAGTGTAAGACATGTCTGGGACA-TGCATCGAC
69782521 TTTAATGTGC
Statistics
Matches: 147, Mismatches: 21, Indels: 23
0.77 0.11 0.12
Matches are distributed among these distances:
45 3 0.02
46 57 0.39
47 14 0.10
48 4 0.03
49 67 0.46
50 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (48 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACGATACATGA
Found at i:69791037 original size:12 final size:11
Alignment explanation
Indices: 69790990--69791079 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
69790980 TAGAAAAATT
69790990 ATATTAATTTA
1 ATATTAATTTA
*
69791001 ATTTTTTAATATTA
1 A--TATTAAT-TTA
69791015 A-ATTAAATTTA
1 ATATT-AATTTA
69791026 ATACTTAATTTA
1 ATA-TTAATTTA
*
69791038 ATATTAAATTA
1 ATATTAATTTA
69791049 ACTATCTTAATATTA
1 A-TA--TTAAT-TTA
69791064 ATATTAATTTA
1 ATATTAATTTA
69791075 ATATT
1 ATATT
69791080 TATATCGTAG
Statistics
Matches: 65, Mismatches: 4, Indels: 20
0.73 0.04 0.22
Matches are distributed among these distances:
11 23 0.35
12 20 0.31
13 8 0.12
14 10 0.15
15 4 0.06
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.52
Consensus pattern (11 bp):
ATATTAATTTA
Found at i:69791037 original size:29 final size:30
Alignment explanation
Indices: 69791005--69791075 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 30
69790995 AATTTAATTT
69791005 TTTAATATTAAATTAA-AT-TTAATACTTAA
1 TTTAATATTAAATTAACATCTTAATA-TTAA
69791034 TTTAATATTAAATTAACTATCTTAATATTAA
1 TTTAATATTAAATTAAC-ATCTTAATATTAA
69791065 TATTAAT-TTAA
1 T-TTAATATTAA
69791076 TATTTATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
29 16 0.42
31 11 0.29
32 11 0.29
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
TTTAATATTAAATTAACATCTTAATATTAA
Done.