Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 230 of 425
Found at i:70052570 original size:74 final size:79
Alignment explanation
Indices: 70052442--70052663 Score: 310
Period size: 74 Copynumber: 2.8 Consensus size: 79
70052432 TACGCCTGCT
70052442 AGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 AGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
70052507 ATCACC-G-AC-A-
66 ATCACCGGCACAAC
*
70052517 A-GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 AGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
70052581 ATCACCGGCACGAAGCCTGC
66 ATCACCGGCAC-AA-----C
* * *
70052601 TAGGCACGAAGGCCCAAATACACATCACCGGCACGAATCCTACTAGGCACGAAGGCCCGAATA
1 -AGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATA
70052664 TAATACCAGC
Statistics
Matches: 130, Mismatches: 5, Indels: 13
0.88 0.03 0.09
Matches are distributed among these distances:
74 68 0.52
75 2 0.02
76 2 0.02
78 1 0.01
85 1 0.01
86 56 0.43
ACGTcount: A:0.33, C:0.34, G:0.23, T:0.09
Consensus pattern (79 bp):
AGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
ATCACCGGCACAAC
Found at i:70052584 original size:43 final size:43
Alignment explanation
Indices: 70052518--70052663 Score: 256
Period size: 43 Copynumber: 3.4 Consensus size: 43
70052508 TCACCGACAA
70052518 GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
1 GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
*
70052561 GCACAAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
1 GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
* * *
70052604 GCACGAAGGCCCAAATACACATCACCGGCACGAATCCTACTAG
1 GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
70052647 GCACGAAGGCCCGAATA
1 GCACGAAGGCCCGAATA
70052664 TAATACCAGC
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 97 1.00
ACGTcount: A:0.33, C:0.34, G:0.23, T:0.10
Consensus pattern (43 bp):
GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAG
Found at i:70052759 original size:38 final size:38
Alignment explanation
Indices: 70052656--70052760 Score: 138
Period size: 38 Copynumber: 2.8 Consensus size: 38
70052646 GGCACGAAGG
* * * * *
70052656 CCCGAATATAATACCAGCACTAGGCCTACGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
70052694 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** *
70052732 CCCGGATATTTTACCAGCATGAAGCCTGC
1 CCCGGATATAATACCAGCACGAAGCCTGC
70052761 AGGTCTTTAA
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:70055690 original size:44 final size:45
Alignment explanation
Indices: 70055637--70055738 Score: 134
Period size: 44 Copynumber: 2.3 Consensus size: 45
70055627 TGTCTTTGAC
* * *
70055637 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
** *
70055681 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATA-TTATAAT
70055727 ATGGACTTACAT
1 ATGGACTTACAT
70055739 AGCTCATTTC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
44 33 0.66
46 17 0.34
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCCTGTCTCCAAAGCCATATTATAAT
Found at i:70055744 original size:46 final size:44
Alignment explanation
Indices: 70055656--70055744 Score: 133
Period size: 46 Copynumber: 2.0 Consensus size: 44
70055646 CATGAATTAT
* *
70055656 TCCTGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCATATATAATATGGACTTACATAGCTCAA
*
70055700 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATAGCTCA
1 TCCTGTCTCCAAAGCCATA--TATAATATGGACTTACATAGCTCA
70055745 TTTCTGTTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 18 0.45
46 22 0.55
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (44 bp):
TCCTGTCTCCAAAGCCATATATAATATGGACTTACATAGCTCAA
Found at i:70058475 original size:40 final size:40
Alignment explanation
Indices: 70058374--70058552 Score: 164
Period size: 40 Copynumber: 4.5 Consensus size: 40
70058364 CGAATGGTGT
* * *
70058374 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAAA
* * * *
70058415 CCAGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCAAGTTACTAAAA
* * * *
70058455 CCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTATTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAAA
* * * * *
70058495 CCGGGCTAATTCCCTAAGGCAATTGTGCGAA-TCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAAA
*
70058535 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
70058553 ACAATCGAGC
Statistics
Matches: 109, Mismatches: 26, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
40 83 0.76
41 26 0.24
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAAA
Found at i:70058522 original size:80 final size:81
Alignment explanation
Indices: 70058374--70058552 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 81
70058364 CGAATGGTGT
* * *
70058374 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCAGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCAGGTCAACTCCCGAAGGCAATT
* *
70058439 GTGCGAGTTACCAAAA
66 GTGCGAATCACCAAAA
* * * * * *
70058455 CCGGGTTAAGTCCCGAAGGCATTCGTGC-AAGTTATTAAATCC-GGGCTAATTCCCTAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCAGGTC-AACTCCCGAAGGCAAT
* *
70058518 TGTGCGAATCACTATAA
65 TGTGCGAATCACCAAAA
*
70058535 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
70058553 ACAATCGAGC
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
79 3 0.04
80 54 0.66
81 25 0.30
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCAGGTCAACTCCCGAAGGCAATT
GTGCGAATCACCAAAA
Found at i:70064979 original size:43 final size:43
Alignment explanation
Indices: 70064931--70065169 Score: 370
Period size: 43 Copynumber: 5.6 Consensus size: 43
70064921 GGCATTACGT
70064931 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
* * *
70064974 TTGCTAGGCACAAAGGCCCGAATACACATCACCGGCATGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
* * * * *
70065017 CTGCTAGGCATGAAGGCCTGAATACACATCATCAGCATGAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
* **
70065060 CTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAAA
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
*
70065103 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACAAAGC
1 CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
70065146 CTGCTAGGCACGAAGGCCCGAATA
1 CTGCTAGGCACGAAGGCCCGAATA
70065170 TAATACCAGC
Statistics
Matches: 175, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 175 1.00
ACGTcount: A:0.33, C:0.31, G:0.24, T:0.12
Consensus pattern (43 bp):
CTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGC
Found at i:70065210 original size:38 final size:38
Alignment explanation
Indices: 70065162--70065285 Score: 149
Period size: 38 Copynumber: 3.2 Consensus size: 38
70065152 GGCACGAAGG
* * * *
70065162 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
70065200 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** * * *
70065238 CCCGGATATTTTACCAGTATGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
70065277 GCCCGGATA
1 -CCCGGATA
70065286 CACATCAAAT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
38 62 0.83
39 5 0.07
40 8 0.11
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:70071023 original size:25 final size:24
Alignment explanation
Indices: 70070982--70071047 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
70070972 TCCTATACAT
* *
70070982 GTATGCTCATACAAGCTCTGAATTG
1 GTATGCTCATACGAGCTAT-AATTG
*
70071007 GTATGCTCTTACGAGCTATAATTG
1 GTATGCTCATACGAGCTATAATTG
* *
70071031 GTAAGTTCATACGAGCT
1 GTATGCTCATACGAGCT
70071048 GAATATCAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
24 19 0.54
25 16 0.46
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (24 bp):
GTATGCTCATACGAGCTATAATTG
Found at i:70074700 original size:45 final size:45
Alignment explanation
Indices: 70074636--70074727 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
70074626 TTCAAATATT
70074636 CAACACCATGGCACTCTCACATCTTCATAATGTCATCCTATTGCA
1 CAACACCATGGCACTCTCACATCTTCATAATGTCATCCTATTGCA
70074681 CAACACCATGGCACTCTCACATCTTCATAATGTCATCCTATTGCA
1 CAACACCATGGCACTCTCACATCTTCATAATGTCATCCTATTGCA
70074726 CA
1 CA
70074728 TTCATTTTGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.29, C:0.34, G:0.09, T:0.28
Consensus pattern (45 bp):
CAACACCATGGCACTCTCACATCTTCATAATGTCATCCTATTGCA
Found at i:70076454 original size:53 final size:53
Alignment explanation
Indices: 70076390--70076597 Score: 220
Period size: 53 Copynumber: 3.9 Consensus size: 53
70076380 CTTTCCTTTT
* *
70076390 TAAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TAAACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* * * * *
70076443 TGAACTTACCATTTCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTA
1 TAAACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
** * * * * * * *
70076496 TCATAGTTTATCAATGCCATGTCTTGACATGATCTTACATGATTTCCTTGCCTTG
1 T-A-AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
* *
70076551 TAAAACTTACCA-TGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 T-AAACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
70076598 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 31, Indels: 4
0.78 0.20 0.03
Matches are distributed among these distances:
53 76 0.62
54 6 0.05
55 40 0.33
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (53 bp):
TAAACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTA
Found at i:70084987 original size:68 final size:68
Alignment explanation
Indices: 70084850--70085006 Score: 192
Period size: 68 Copynumber: 2.3 Consensus size: 68
70084840 TTAACTGTGA
* * * *
70084850 AATC-AACAGATTCGGACAGCTACATTTACTAAATAAAACAGCATATATGGTAGTGCATCGAACA
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAGTGCATCGAACA
70084914 ATG
66 ATG
* * * * *
70084917 AATTTAACACATTCGGACAGCTACATTTACCAAATAAAACAGTATAAATGAT-GATGCTTTGAAT
1 AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAG-TGCATCGAAC
*
70084981 AGTG
65 AATG
*
70084985 AATCTAACACATTCGAACAGCT
1 AATCTAACACATTCGGACAGCT
70085007 TAATTTTAAG
Statistics
Matches: 76, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
67 4 0.05
68 72 0.95
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (68 bp):
AATCTAACACATTCGGACAGCTACATTTACCAAATAAAACAGCATAAATGATAGTGCATCGAACA
ATG
Found at i:70086615 original size:53 final size:53
Alignment explanation
Indices: 70086539--70086732 Score: 181
Period size: 55 Copynumber: 3.6 Consensus size: 53
70086529 AACATGCCAT
* * * * * *
70086539 TGCCATGTCTTGACATGGTCTTACGTGGTATCTTTGCCTTATGAACTCACCAT
1 TGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTGTAAACTTACCAA
* * * ** *
70086592 TGCCATGCCTTGGCATGGTCTTACATGGGATCTGTGCCTTGTCATAGTTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTGT-A-AACTTACCAA
* * * * *
70086647 TGCTATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTGT-AAACTTACCAA
* * *
70086701 TGCCATGCCTTGGCATTGTCTTACTTGGTATC
1 TGCCATGCCTTGACATGGTCTTACATGGTATC
70086733 CTTAAACCCT
Statistics
Matches: 108, Mismatches: 31, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
53 36 0.33
54 32 0.30
55 40 0.37
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTGTAAACTTACCAA
Found at i:70088489 original size:44 final size:43
Alignment explanation
Indices: 70088423--70088539 Score: 135
Period size: 44 Copynumber: 2.7 Consensus size: 43
70088413 ACATATATCG
* *
70088423 CATCCATAATGAACTTGAACCAACTCAAGAAGCTCGGATGCTCA
1 CATCCATAATGAACTCGGACCAACTCAAGAAGCTCGGATGC-CA
* * *
70088467 CATCCATAATGAACTCGGACCAACTCAATAAGTTCGGATGCCT
1 CATCCATAATGAACTCGGACCAACTCAAGAAGCTCGGATGCCA
* * *
70088510 CATACATATCACGAACCCGGACCAACTCAA
1 CATCCATA--ATGAACTCGGACCAACTCAA
70088540 CGAGTTTAGA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
43 8 0.13
44 37 0.59
45 18 0.29
ACGTcount: A:0.36, C:0.30, G:0.15, T:0.20
Consensus pattern (43 bp):
CATCCATAATGAACTCGGACCAACTCAAGAAGCTCGGATGCCA
Found at i:70091120 original size:15 final size:15
Alignment explanation
Indices: 70091088--70091150 Score: 72
Period size: 15 Copynumber: 4.1 Consensus size: 15
70091078 GTTTTTAATA
*
70091088 TATAGTGTTCACAATC
1 TATAGT-TTCACAGTC
* *
70091104 TAAAGTTTCATAGTC
1 TATAGTTTCACAGTC
*
70091119 TATTGTTTCACAGTC
1 TATAGTTTCACAGTC
*
70091134 TATAGTTTCACAATC
1 TATAGTTTCACAGTC
70091149 TA
1 TA
70091151 GAATTTCAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
15 34 0.87
16 5 0.13
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.41
Consensus pattern (15 bp):
TATAGTTTCACAGTC
Found at i:70092636 original size:35 final size:35
Alignment explanation
Indices: 70092500--70092653 Score: 163
Period size: 35 Copynumber: 4.4 Consensus size: 35
70092490 TTTTAGTAGG
* *
70092500 CATGCTTTACATGC-AGATCAGAATCAGTAT-A-GCA
1 CATGCTTAACATGCGA-ATAAGAATCAGTATAATG-A
70092534 GCATGCTTAACATGCGAATAAGAATCAGTATAATGA
1 -CATGCTTAACATGCGAATAAGAATCAGTATAATGA
** * *
70092570 CACACTTAACATGCAAATCAGAATCAGTATAATGA
1 CATGCTTAACATGCGAATAAGAATCAGTATAATGA
* *
70092605 CATGCTTAACATGCGAATTAGAATCGGTATAATTG-
1 CATGCTTAACATGCGAATAAGAATCAGTATAA-TGA
*
70092640 CATGGTTAACATGC
1 CATGCTTAACATGC
70092654 TAATCAGCTA
Statistics
Matches: 103, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
35 97 0.94
36 5 0.05
37 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (35 bp):
CATGCTTAACATGCGAATAAGAATCAGTATAATGA
Found at i:70092649 original size:70 final size:69
Alignment explanation
Indices: 70092499--70092660 Score: 202
Period size: 70 Copynumber: 2.3 Consensus size: 69
70092489 TTTTTAGTAG
* *
70092499 GCATGCTTTACATGCAGATCAGAATCAGTATAGCAGCATGCTTAACATGCGAATAAGAATCAGTA
1 GCATGCTTAACATGCAAATCAGAATCAGTATAGCAGCATGCTTAACATGCGAATAAGAATCAGTA
70092564 TAAT
66 TAAT
** * *
70092568 GACACACTTAACATGCAAATCAGAATCAGTATA--ATGACATGCTTAACATGCGAATTAGAATCG
1 G-CATGCTTAACATGCAAATCAGAATCAGTATAGCA-G-CATGCTTAACATGCGAATAAGAATCA
70092631 GTATAATT
63 GTATAA-T
* *
70092639 GCATGGTTAACATGCTAATCAG
1 GCATGCTTAACATGCAAATCAG
70092661 CTAATCAGAA
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
68 1 0.01
69 2 0.03
70 74 0.94
71 2 0.03
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (69 bp):
GCATGCTTAACATGCAAATCAGAATCAGTATAGCAGCATGCTTAACATGCGAATAAGAATCAGTA
TAAT
Found at i:70094754 original size:16 final size:16
Alignment explanation
Indices: 70094733--70094767 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
70094723 ATAGGTGGAT
70094733 TTGTAATGGTATTTAG
1 TTGTAATGGTATTTAG
70094749 TTGTAATGGTATTTAG
1 TTGTAATGGTATTTAG
70094765 TTG
1 TTG
70094768 AAAATTTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (16 bp):
TTGTAATGGTATTTAG
Found at i:70099657 original size:20 final size:20
Alignment explanation
Indices: 70099632--70099726 Score: 86
Period size: 20 Copynumber: 4.8 Consensus size: 20
70099622 TTGTATGGGA
*
70099632 TTTGCACTTTGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
70099652 TTTGCACTTCGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
***
70099672 TACACACTTCGGTGTCC-CTG
1 TTTGCACTTCGGTG-CCTCTG
* *
70099692 TTTGCACTACGGTTCC-CTTG
1 TTTGCACTTCGGTGCCTC-TG
**
70099712 TCAGCACTTCGGTGC
1 TTTGCACTTCGGTGC
70099727 TCCTATTATG
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
19 3 0.05
20 55 0.92
21 2 0.03
ACGTcount: A:0.09, C:0.31, G:0.23, T:0.37
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCTCTG
Found at i:70099693 original size:40 final size:40
Alignment explanation
Indices: 70099635--70099726 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 40
70099625 TATGGGATTT
* *
70099635 GCACTTTGGTGCCTCTGTTTGCACTTCGGTG-CCTCTGTACA
1 GCACTTCGGTGCCTCTGTTTGCACTACGGTGCCCT-TGT-CA
*
70099676 -CACTTCGGTGTCC-CTGTTTGCACTACGGTTCCCTTGTCA
1 GCACTTCGGTG-CCTCTGTTTGCACTACGGTGCCCTTGTCA
70099715 GCACTTCGGTGC
1 GCACTTCGGTGC
70099727 TCCTATTATG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
39 3 0.07
40 37 0.82
41 5 0.11
ACGTcount: A:0.10, C:0.32, G:0.24, T:0.35
Consensus pattern (40 bp):
GCACTTCGGTGCCTCTGTTTGCACTACGGTGCCCTTGTCA
Found at i:70101501 original size:17 final size:18
Alignment explanation
Indices: 70101459--70101507 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
70101449 AGTTGAAAAG
70101459 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
70101478 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
70101495 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
70101508 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:70102396 original size:40 final size:40
Alignment explanation
Indices: 70102330--70102496 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
70102320 AAATTGAATG
* * *
70102330 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
70102369 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
70102409 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
70102449 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
70102489 ATATCCGG
1 ATATCCGG
70102497 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:70109485 original size:17 final size:18
Alignment explanation
Indices: 70109443--70109491 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
70109433 AGTTGAAAAG
70109443 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
70109462 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
70109479 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
70109492 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:70112370 original size:28 final size:28
Alignment explanation
Indices: 70112301--70112401 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
70112291 GACAAGATTG
* * * *
70112301 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
70112331 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70112359 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
70112388 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70112402 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70120288 original size:28 final size:28
Alignment explanation
Indices: 70120219--70120319 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
70120209 GACAAGATTG
* * * *
70120219 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
70120249 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70120277 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
70120306 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70120320 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70128968 original size:34 final size:34
Alignment explanation
Indices: 70128930--70128995 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
70128920 GTATCAGTTA
* *
70128930 GGGCCATAGCCCATTACAGTATCAGTACCAGTGT
1 GGGCCATAGCCCAATACAGTAACAGTACCAGTGT
* *
70128964 GGGCCTTAGCCCAATACAGTAACAGTATCAGT
1 GGGCCATAGCCCAATACAGTAACAGTACCAGT
70128996 AATGCAATCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (34 bp):
GGGCCATAGCCCAATACAGTAACAGTACCAGTGT
Found at i:70147685 original size:13 final size:13
Alignment explanation
Indices: 70147669--70147701 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
70147659 TTTAATTAAA
*
70147669 TTAGTTAATTAGT
1 TTAGATAATTAGT
70147682 TTAGATAATTAGT
1 TTAGATAATTAGT
70147695 TTA-ATAA
1 TTAGATAA
70147702 ACACACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:70156162 original size:12 final size:11
Alignment explanation
Indices: 70156132--70156182 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
70156122 TGACTCCTCA
*
70156132 TATTTT-TTAT
1 TATTTTATTCT
70156142 TATTTTTATTCT
1 TA-TTTTATTCT
70156154 TATTCTTATTCT
1 TATT-TTATTCT
*
70156166 TATTTTATTTT
1 TATTTTATTCT
70156177 TATTTT
1 TATTTT
70156183 TTTTTGATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
10 2 0.06
11 18 0.50
12 16 0.44
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (11 bp):
TATTTTATTCT
Found at i:70156193 original size:7 final size:6
Alignment explanation
Indices: 70156141--70156204 Score: 69
Period size: 6 Copynumber: 11.0 Consensus size: 6
70156131 ATATTTTTTA
* * *
70156141 TTATTT TTATTC TTATTC TTATTC TTA-TT TTATTT TTATTT TT-TTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
* *
70156187 TGATTT TTATTT TCATTT
1 TTATTT TTATTT TTATTT
70156205 CAATTTTATT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
5 8 0.16
6 43 0.84
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:70156194 original size:23 final size:22
Alignment explanation
Indices: 70156132--70156204 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 22
70156122 TGACTCCTCA
*
70156132 TATTTTTTATTATTTTTATTCT
1 TATTTTTTATTATTTTTATTTT
*
70156154 TATTCTTATTCTTA-TTTTATTTT
1 TATT-TT-TTATTATTTTTATTTT
*
70156177 TATTTTTTTTTGATTTTTATTTT
1 TATTTTTTATT-ATTTTTATTTT
*
70156200 CATTT
1 TATTT
70156205 CAATTTTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
21 4 0.09
22 7 0.16
23 27 0.63
24 5 0.12
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.77
Consensus pattern (22 bp):
TATTTTTTATTATTTTTATTTT
Found at i:70156197 original size:34 final size:33
Alignment explanation
Indices: 70156132--70156219 Score: 81
Period size: 34 Copynumber: 2.6 Consensus size: 33
70156122 TGACTCCTCA
*
70156132 TATTTT-TTATTATTTTTATTCTTATTCTTATTCT
1 TATTTTATTTTTATTTTT-TTCTTATTCTTATT-T
*
70156166 TATTTTATTTTTATTTTTTT-TTGATTTTTATTT
1 TATTTTATTTTTATTTTTTTCTT-ATTCTTATTT
* * *
70156199 TCATTTCAATTTTATTATTTT
1 T-ATTTTATTTTTATTTTTTT
70156220 ATTTTGAAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
33 4 0.09
34 32 0.70
35 10 0.22
ACGTcount: A:0.18, C:0.06, G:0.01, T:0.75
Consensus pattern (33 bp):
TATTTTATTTTTATTTTTTTCTTATTCTTATTT
Found at i:70159691 original size:45 final size:45
Alignment explanation
Indices: 70159622--70159733 Score: 152
Period size: 45 Copynumber: 2.5 Consensus size: 45
70159612 AAATTAAGAT
* * *
70159622 ATCCGAACTCATTGAGTTGGTCTGGGTTCGTGATATATATGAGGC
1 ATCCGAACTCATTGAGTTGGTCTGGGCTCATGATATATATGAGAC
* * *
70159667 ATCCAAACTCATTGAGTTGGTCTGGGCTCATGATATGTATGTGAC
1 ATCCGAACTCATTGAGTTGGTCTGGGCTCATGATATATATGAGAC
* *
70159712 ATCCGAGCTCGTTGAGTTGGTC
1 ATCCGAACTCATTGAGTTGGTC
70159734 CGAGTTCATA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (45 bp):
ATCCGAACTCATTGAGTTGGTCTGGGCTCATGATATATATGAGAC
Found at i:70164232 original size:92 final size:94
Alignment explanation
Indices: 70164089--70164258 Score: 224
Period size: 92 Copynumber: 1.8 Consensus size: 94
70164079 ATATCTGTGT
* * *
70164089 CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTAGCCGATG-CATGTCCCAGACA
1 CGATGCCAAGTCCCAAACATGGTCTTACACTAACACATCTCATAGCCGATGCCATGTCCCAGACA
70164153 TG-TCTTACACTGGCTTACGTCTTGAGCC
66 TGATCTTACACTGGCTTACGTCTTGAGCC
* * *
70164181 CGATG-CAAGTCCCAAACAT-GTCTTACACTAGCACTCATCTCA-ATGCTGATGCCATGTCCCAT
1 CGATGCCAAGTCCCAAACATGGTCTTACACTA--ACACATCTCATA-GCCGATGCCATGTCCCAG
70164243 ACATGATCTTACACTG
63 ACATGATCTTACACTG
70164259 TCTCTCATAA
Statistics
Matches: 67, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
90 11 0.16
91 13 0.19
92 19 0.28
93 14 0.21
94 10 0.15
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.26
Consensus pattern (94 bp):
CGATGCCAAGTCCCAAACATGGTCTTACACTAACACATCTCATAGCCGATGCCATGTCCCAGACA
TGATCTTACACTGGCTTACGTCTTGAGCC
Found at i:70167382 original size:40 final size:40
Alignment explanation
Indices: 70167337--70167504 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
70167327 CGGAATATAA
70167337 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
70167377 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
70167417 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
70167457 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
70167497 CCGGATAT
1 CCGGATAT
70167505 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70173087 original size:24 final size:24
Alignment explanation
Indices: 70173055--70173104 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
70173045 TTTTTAAGAC
70173055 AAGTTAAATTACAAAATAGAATGA
1 AAGTTAAATTACAAAATAGAATGA
70173079 AAGTTAAATTACAAAATAGAATGA
1 AAGTTAAATTACAAAATAGAATGA
70173103 AA
1 AA
70173105 CATAGCTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.60, C:0.04, G:0.12, T:0.24
Consensus pattern (24 bp):
AAGTTAAATTACAAAATAGAATGA
Found at i:70174493 original size:55 final size:55
Alignment explanation
Indices: 70174394--70174537 Score: 173
Period size: 55 Copynumber: 2.6 Consensus size: 55
70174384 TATGAAGGGC
* * * * * *
70174394 CACGCCCGTGTTGTTTTGACAGGTTTGCCCATGGTTGATTGGCACGGGCGTGTCG
1 CACGCCCGTGTTGTTTTGACAGGTTCGCCCACGGTTCATAGGCACGGCCATGTCG
** *
70174449 CACGCCCGTGTTAATTTGACAGGTTCGACCACGGTTTCA-AGGCACGGCCATGTCG
1 CACGCCCGTGTTGTTTTGACAGGTTCGCCCACGG-TTCATAGGCACGGCCATGTCG
* *
70174504 CACGCTCGTGTTGTTTTGGCAGGTTCGCCCACGG
1 CACGCCCGTGTTGTTTTGACAGGTTCGCCCACGG
70174538 CCATGTCGCA
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
55 71 0.96
56 3 0.04
ACGTcount: A:0.14, C:0.27, G:0.31, T:0.28
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTGACAGGTTCGCCCACGGTTCATAGGCACGGCCATGTCG
Found at i:70180659 original size:9 final size:9
Alignment explanation
Indices: 70180643--70180683 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
70180633 CAATGCTTTT
70180643 TTGCATTCA
1 TTGCATTCA
*
70180652 TCGCATTCA
1 TTGCATTCA
70180661 TTGCATTCA
1 TTGCATTCA
70180670 TTGCATTCA
1 TTGCATTCA
70180679 -TGCAT
1 TTGCAT
70180684 CAGCATTGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 5 0.17
9 25 0.83
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.41
Consensus pattern (9 bp):
TTGCATTCA
Found at i:70183808 original size:29 final size:28
Alignment explanation
Indices: 70183774--70183876 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
70183764 TACTCAATCA
*
70183774 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
70183803 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
70183832 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
70183861 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
70183877 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:70188977 original size:40 final size:40
Alignment explanation
Indices: 70188852--70189003 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
70188842 TCGAATGATG
* *
70188852 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGCT-ACCAAA
* * * *
70188892 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTCCCAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGCTACCAAA
* **
70188932 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTATTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCA-AA
* * *
70188973 -CCGGGCTATGTCCCGAAGGCTTTTGAGCGAG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
70189004 TCGCTATATC
Statistics
Matches: 91, Mismatches: 16, Indels: 10
0.78 0.14 0.09
Matches are distributed among these distances:
39 1 0.01
40 79 0.87
41 11 0.12
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACCAAA
Found at i:70189346 original size:18 final size:18
Alignment explanation
Indices: 70189323--70189365 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
70189313 CTTGCTCAAA
70189323 ACTTACTAAGCATAAATT
1 ACTTACTAAGCATAAATT
70189341 ACTTACTAAGCATAAATT
1 ACTTACTAAGCATAAATT
*
70189359 GCTTACT
1 ACTTACT
70189366 CCGTTTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.40, C:0.19, G:0.07, T:0.35
Consensus pattern (18 bp):
ACTTACTAAGCATAAATT
Found at i:70195186 original size:44 final size:45
Alignment explanation
Indices: 70195136--70195326 Score: 135
Period size: 43 Copynumber: 4.4 Consensus size: 45
70195126 AGCCCCATCT
* *
70195136 CCCTAAGCAGTAGGGTAACAGGCT-AAATTTACAAGATCTTAACC
1 CCCTAAGCAGTAGGGAAACAGGCTCAAAGTTACAAGATCTTAACC
* * * * * * * *
70195180 CCCTAAGCAGTAGGGAAACA-GATCGAAGGT-GATGAGCCTAAAC
1 CCCTAAGCAGTAGGGAAACAGGCTCAAAGTTACAAGATCTTAACC
* * *
70195223 CCCTAAGCAGTAGGGAAACA-GATCGAAAGTAACAAGCT-TTAA-C
1 CCCTAAGCAGTAGGGAAACAGGCTC-AAAGTTACAAGATCTTAACC
* * * * ** * *
70195266 CCCTAAGCAGTAAGGTAACAAGCTGAATTTTA-AAGATCTTATCA
1 CCCTAAGCAGTAGGGAAACAGGCTCAAAGTTACAAGATCTTAACC
70195310 CCCTAAGCAGTAGGGAA
1 CCCTAAGCAGTAGGGAA
70195327 GCAGATCAAA
Statistics
Matches: 111, Mismatches: 30, Indels: 12
0.73 0.20 0.08
Matches are distributed among these distances:
42 4 0.04
43 60 0.54
44 45 0.41
45 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (45 bp):
CCCTAAGCAGTAGGGAAACAGGCTCAAAGTTACAAGATCTTAACC
Found at i:70195238 original size:43 final size:43
Alignment explanation
Indices: 70195179--70195277 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
70195169 AGATCTTAAC
* * **
70195179 CCCCTAAGCAGTAGGGAAACAGATCGAAGGTGATGAGCCTAAA
1 CCCCTAAGCAGTAGGGAAACAGATCGAAAGTAACAAGCCTAAA
* *
70195222 CCCCTAAGCAGTAGGGAAACAGATCGAAAGTAACAAGCTTTAA
1 CCCCTAAGCAGTAGGGAAACAGATCGAAAGTAACAAGCCTAAA
70195265 CCCCTAAGCAGTA
1 CCCCTAAGCAGTA
70195278 AGGTAACAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.15
Consensus pattern (43 bp):
CCCCTAAGCAGTAGGGAAACAGATCGAAAGTAACAAGCCTAAA
Found at i:70195469 original size:45 final size:44
Alignment explanation
Indices: 70195399--70195503 Score: 133
Period size: 45 Copynumber: 2.4 Consensus size: 44
70195389 AGGCCTTAAC
* *
70195399 CCCTAAGCAGTAGGGAAACAGGCTGAAGATCTACAGATC-TTATCA
1 CCCTAAGCAGTAGGGAAACAAGCTGAA-ATCTAAAGA-CGTTATCA
* * *
70195444 CCCTAAGCAGTAGGGTAACAAGCTGAATTTTAAAGACGTTATCA
1 CCCTAAGCAGTAGGGAAACAAGCTGAAATCTAAAGACGTTATCA
70195488 CCCTAAG-AGTAGGGAA
1 CCCTAAGCAGTAGGGAA
70195504 GCAGATCAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
43 9 0.17
44 19 0.36
45 25 0.47
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGAAACAAGCTGAAATCTAAAGACGTTATCA
Found at i:70195549 original size:177 final size:179
Alignment explanation
Indices: 70195266--70195691 Score: 671
Period size: 178 Copynumber: 2.4 Consensus size: 179
70195256 AAGCTTTAAC
*
70195266 CCCTAAGCAGTAAGGTAACAAGCTGAATTTTAAAGATCTTATCACCCTAAGCAGTAGGGAAGCAG
1 CCCTAAGCAGTAGGGTAACAAGCTGAATTTTAAAGATCTTATCACCCTAAGCAGTAGGGAAGCAG
* *
70195331 ATCAAAAGACGGTGAATCTTGCCCTCCTGAAGTTGCAGTGAAGTAGATTCAAACCACCAGGCCTT
66 ATCAAAAGACGGTGAATCTTGCCCTCCTGAAGTTACAGTGAAGCAGATTCAAACCACCAGGCCTT
70195396 AA-CCCCTAAGCAGTAGGGAAACAGGCTGAAGATCTACAGATCTTATCA
131 AACCCCCTAAGCAGTAGGGAAACAGGCTGAAGATCTACAGATCTTATCA
70195444 CCCTAAGCAGTAGGGTAACAAGCTGAATTTTAAAGA-CGTTATCACCCTAAG-AGTAGGGAAGCA
1 CCCTAAGCAGTAGGGTAACAAGCTGAATTTTAAAGATC-TTATCACCCTAAGCAGTAGGGAAGCA
* *
70195507 GATCAAAATATGGTGAATCTTGCCCTCCTGAAGTTACAGTGAAGCAGATTCAAACCACCAGGCCT
65 GATCAAAAGACGGTGAATCTTGCCCTCCTGAAGTTACAGTGAAGCAGATTCAAACCACCAGGCCT
70195572 TAACCCCCTAAGCAGTAGGGAAACAGGCTGAAGATCTACAGATCTTATCA
130 TAACCCCCTAAGCAGTAGGGAAACAGGCTGAAGATCTACAGATCTTATCA
* * * * ** * * * **
70195622 CCCTAAGTAGTAGGGTGACAGGTTGAA-TCCACAGATCTTAACCCCCTAAGCAGTAGGGAAATAG
1 CCCTAAGCAGTAGGGTAACAAGCTGAATTTTAAAGATCTTATCACCCTAAGCAGTAGGGAAGCAG
70195686 ATCAAA
66 ATCAAA
70195692 GGTGACAAGC
Statistics
Matches: 228, Mismatches: 16, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
177 93 0.41
178 135 0.59
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (179 bp):
CCCTAAGCAGTAGGGTAACAAGCTGAATTTTAAAGATCTTATCACCCTAAGCAGTAGGGAAGCAG
ATCAAAAGACGGTGAATCTTGCCCTCCTGAAGTTACAGTGAAGCAGATTCAAACCACCAGGCCTT
AACCCCCTAAGCAGTAGGGAAACAGGCTGAAGATCTACAGATCTTATCA
Found at i:70195643 original size:45 final size:43
Alignment explanation
Indices: 70195570--70195682 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
70195560 ACCACCAGGC
* *
70195570 CTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAGATCTACAGAT
1 CTTAACACCCTAAGCAGTAGGGAAACAGGCTG-A-ATCCACAGAT
* * ** *
70195615 CTTATCACCCTAAGTAGTAGGGTGACAGGTTGAATCCACAGAT
1 CTTAACACCCTAAGCAGTAGGGAAACAGGCTGAATCCACAGAT
*
70195658 CTTAACCCCCTAAGCAGTAGGGAAA
1 CTTAACACCCTAAGCAGTAGGGAAA
70195683 TAGATCAAAG
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 29 0.52
44 1 0.02
45 26 0.46
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (43 bp):
CTTAACACCCTAAGCAGTAGGGAAACAGGCTGAATCCACAGAT
Found at i:70195670 original size:43 final size:45
Alignment explanation
Indices: 70195570--70195862 Score: 154
Period size: 44 Copynumber: 6.6 Consensus size: 45
70195560 ACCACCAGGC
*
70195570 CTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAGATCTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAGATCCACAGAT
* * * ** *
70195615 CTTATCACCCTAAGTAGTAGGGTGACAGGTTG-A-ATCCACAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAGATCCACAGAT
* * * * * *
70195658 CTTAACCCCCTAAGCAGTAGGGAAATA-GATCAAAGGT-GACA-AGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGCT-GAAGATCCACAGA-T
* * ****
70195702 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTTGTAGAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAGATCCACAGAT
* * * * * ** * * *
70195747 CTCATCGCCCTATGCAGTCGGGAAACA-AATCGAAGA-CGA-TGAGC
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGCT-GAAGATCCACAGA-T
* * * * ** * *
70195791 CTCAAACCCCTAAGCAGTAGGGTAATAGGCTGAATTTACA-ATAT
1 CTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAGATCCACAGAT
70195835 CTTAACCCCCTAAGCAGTAGGGAAACAG
1 CTTAACCCCCTAAGCAGTAGGGAAACAG
70195863 ATCGAAGGTA
Statistics
Matches: 175, Mismatches: 62, Indels: 23
0.67 0.24 0.09
Matches are distributed among these distances:
42 2 0.01
43 33 0.19
44 81 0.46
45 58 0.33
46 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (45 bp):
CTTAACCCCCTAAGCAGTAGGGAAACAGGCTGAAGATCCACAGAT
Found at i:70195886 original size:88 final size:87
Alignment explanation
Indices: 70195622--70195912 Score: 314
Period size: 88 Copynumber: 3.3 Consensus size: 87
70195612 GATCTTATCA
* * * *
70195622 CCCTAAGTAGTAGGGTGACAGGTTGAA-TCCACAGATCTTAACCCCCTAAGCAGTAGGGAAATAG
1 CCCTAAGTAGTAGGGTAACAGGCTGAATTTCA-AGATCTTAACCCCCTAAGCAGTAGGGAAACAG
* ** *
70195686 ATCAAAGGTGACAAGCCTTAACC
65 ATCGAAGGTGATGAGCCTTAAAC
** * * * * *
70195709 CCCTAAGTAGTAGGGTAACAGGCTGAAGATTTGTAGATCTCATCGCCCTATGCAGTCGGGAAACA
1 CCCTAAGTAGTAGGGTAACAGGCTG-A-ATTTCAAGATCTTAACCCCCTAAGCAGTAGGGAAACA
* ** *
70195774 AATCGAAGACGATGAGCCTCAAAC
64 GATCGAAGGTGATGAGCCTTAAAC
* * *
70195798 CCCTAAGCAGTAGGGTAATAGGCTGAATTTACAATATCTTAACCCCCTAAGCAGTAGGGAAACAG
1 CCCTAAGTAGTAGGGTAACAGGCTGAATTT-CAAGATCTTAACCCCCTAAGCAGTAGGGAAACAG
* *
70195863 ATCGAAGGTAATGGGCCTTAAAC
65 ATCGAAGGTGATGAGCCTTAAAC
*
70195886 CCCTATGTAGTAGGGTAACAGGCTGAA
1 CCCTAAGTAGTAGGGTAACAGGCTGAA
70195913 AATTACGAAT
Statistics
Matches: 162, Mismatches: 38, Indels: 7
0.78 0.18 0.03
Matches are distributed among these distances:
87 27 0.17
88 69 0.43
89 65 0.40
90 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.21
Consensus pattern (87 bp):
CCCTAAGTAGTAGGGTAACAGGCTGAATTTCAAGATCTTAACCCCCTAAGCAGTAGGGAAACAGA
TCGAAGGTGATGAGCCTTAAAC
Found at i:70196017 original size:44 final size:44
Alignment explanation
Indices: 70195967--70196073 Score: 126
Period size: 44 Copynumber: 2.4 Consensus size: 44
70195957 AGCCATTAAC
*
70195967 CTTATCTCCTTGAAGTTTCAGCAGAG-AAGATCGAAACTACAAGT
1 CTTATCTCCTTGAAGTTGCAGCAGAGCAAG-TCGAAACTACAAGT
* ** **
70196011 CTTATCTCTTTGAAGTTGCAGTGGAGCAAGTCGAAGTTACAAGT
1 CTTATCTCCTTGAAGTTGCAGCAGAGCAAGTCGAAACTACAAGT
* *
70196055 CTTATTTCCTTGAAATTGC
1 CTTATCTCCTTGAAGTTGC
70196074 GGTGGAGCAG
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 50 0.94
45 3 0.06
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (44 bp):
CTTATCTCCTTGAAGTTGCAGCAGAGCAAGTCGAAACTACAAGT
Found at i:70196859 original size:19 final size:20
Alignment explanation
Indices: 70196835--70196878 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
70196825 ATTAAAAACA
70196835 AAAAATAT-AAAAAGGGGAG
1 AAAAATATAAAAAAGGGGAG
70196854 AAAAATATAAAAAAGGGGAG
1 AAAAATATAAAAAAGGGGAG
70196874 AAAAA
1 AAAAA
70196879 CCCTTAAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.68, C:0.00, G:0.23, T:0.09
Consensus pattern (20 bp):
AAAAATATAAAAAAGGGGAG
Found at i:70197288 original size:13 final size:13
Alignment explanation
Indices: 70197253--70197277 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70197243 TTTCATAATT
70197253 ACTCATTATTATC
1 ACTCATTATTATC
70197266 ACTCATTATTAT
1 ACTCATTATTAT
70197278 ACGTTATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (13 bp):
ACTCATTATTATC
Found at i:70213144 original size:2 final size:2
Alignment explanation
Indices: 70213137--70213171 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
70213127 ATTTTAACTT
70213137 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70213172 CACAAATCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:70216000 original size:40 final size:40
Alignment explanation
Indices: 70215907--70216123 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
70215897 AAGCCAAGTA
* * *
70215907 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
70215945 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70215985 CCTTCGGGACTTAGCCCGAATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70216025 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
70216065 CCTTTGGGACTTAGCCTGGATATAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70216105 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70216124 TTATCATCCG
Statistics
Matches: 155, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 126 0.81
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70224081 original size:40 final size:40
Alignment explanation
Indices: 70223988--70224164 Score: 252
Period size: 40 Copynumber: 4.5 Consensus size: 40
70223978 AAGCCAAGTA
* * *
70223988 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
70224026 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70224066 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70224106 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70224146 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70224165 TTATCATCCG
Statistics
Matches: 126, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 12 0.10
39 17 0.13
40 97 0.77
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70226204 original size:37 final size:37
Alignment explanation
Indices: 70226149--70226271 Score: 219
Period size: 37 Copynumber: 3.3 Consensus size: 37
70226139 TTATTACGAA
70226149 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
70226186 GTCTTACCCGGACGTAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
70226223 GTCTTACCCGGACATAATCTCTACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
70226260 GTCTCACCCGGA
1 GTCTTACCCGGA
70226272 ATATATTTCC
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:70226387 original size:48 final size:48
Alignment explanation
Indices: 70226316--70227081 Score: 1302
Period size: 48 Copynumber: 16.0 Consensus size: 48
70226306 TGTTACAACA
* * *
70226316 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTAATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70226364 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70226412 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATA-
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
70226459 TTCACATTAGCCATTCGGCTTTA-CACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70226506 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
70226554 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
70226602 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
70226650 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70226698 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70226746 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70226794 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
70226842 TTCACATTCGCCATTCGGCTTTACCATATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70226890 TTCACATTAGCCATTCGGCTTTACCACATATACACATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70226938 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70226986 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
70227034 TTCACATTCGCCATTCGGCCTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
70227082 ATATTTATCT
Statistics
Matches: 675, Mismatches: 41, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
46 21 0.03
47 46 0.07
48 608 0.90
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:70233889 original size:50 final size:51
Alignment explanation
Indices: 70233812--70233940 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
70233802 GACCATGGCA
*
70233812 ACAAGTGATAAGCGATAGCTTCGGCTACACTTATCTAATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAA-TG
* *
70233863 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
* * *
70233913 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
70233941 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTAATCAAGGACAAATG
Found at i:70233954 original size:31 final size:31
Alignment explanation
Indices: 70233916--70234126 Score: 309
Period size: 31 Copynumber: 6.8 Consensus size: 31
70233906 ACAAATGACA
70233916 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
70233947 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
70233978 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
70234009 AGTGAAAAGTGGTA-CTTCCAGCTACTTGATC
1 AGTGAAAAGTGGTAGCTT-CAGCTACCTGATC
* *
70234040 AGTGAAAAGTGGTATC-TCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAG-CTACCTGATC
* * *
70234071 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* *
70234102 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTAC
70234127 AATTGACAAG
Statistics
Matches: 164, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
30 5 0.03
31 156 0.95
32 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:70234228 original size:47 final size:48
Alignment explanation
Indices: 70234158--70234283 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 48
70234148 AAGTGATTTC
* *
70234158 CGTATAATACCATATCTGGGATATGGCATCGATGTGATATATGCT-ACT
1 CGTATAAGACCATATCTGGGATATGGCATCGATGTGAGATATG-TGACT
*
70234206 -GTATAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATT
1 CGTATAAGACCATATCTGGGATATGGCATCGATGTGAGATATGTGACT
* * *
70234251 CGTGTAAGACCATAGCTGGGCTATGGCATCGAT
1 CGTATAAGACCATATCTGGGATATGGCATCGAT
70234284 ATATGAATAT
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
44 1 0.01
45 11 0.16
46 27 0.40
47 29 0.43
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (48 bp):
CGTATAAGACCATATCTGGGATATGGCATCGATGTGAGATATGTGACT
Found at i:70234310 original size:42 final size:43
Alignment explanation
Indices: 70234252--70234366 Score: 162
Period size: 42 Copynumber: 2.7 Consensus size: 43
70234242 TATGTGATTC
*
70234252 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* *
70234294 GTGTAAGACCATAGCTGGGCTATGGCAT-AATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
70234336 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
70234367 GAAAACGAAG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
41 1 0.02
42 62 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:70238766 original size:50 final size:51
Alignment explanation
Indices: 70238689--70238817 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
70238679 GACCATGGCA
* *
70238689 ACAAGTGATAAGCGATAACTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAA-TG
*
70238740 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGATAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAATG
* * *
70238790 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
70238818 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAATG
Found at i:70238831 original size:31 final size:31
Alignment explanation
Indices: 70238793--70239003 Score: 316
Period size: 31 Copynumber: 6.8 Consensus size: 31
70238783 ATAAATGACA
*
70238793 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
70238824 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
70238855 AGTGAAAAGTGGTAGCTTCAGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
70238886 AGTGAAAAGTGGTAG-TTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
70238917 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
70238948 AGTGAAAAATGGTAGCTCCGGCTATCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
70238979 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
70239004 AAGTGACAAG
Statistics
Matches: 168, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
30 2 0.01
31 165 0.98
32 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:70239098 original size:47 final size:48
Alignment explanation
Indices: 70239028--70239153 Score: 170
Period size: 47 Copynumber: 2.7 Consensus size: 48
70239018 AAGTGATTTC
*
70239028 CGTATAAGACCATATCTGGGATATGGCATCGATGTGATATATGCT-ACT
1 CGTATAAGACCATATCTGGGATATGGCATCGATGTGAGATATG-TGACT
*
70239076 -GTATAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATT
1 CGTATAAGACCATATCTGGGATATGGCATCGATGTGAGATATGTGACT
* * *
70239121 CGTGTAAGACCATAGCTGGGCTATGGCATCGAT
1 CGTATAAGACCATATCTGGGATATGGCATCGAT
70239154 ATATGATATG
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
44 1 0.01
45 11 0.16
46 27 0.39
47 30 0.43
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (48 bp):
CGTATAAGACCATATCTGGGATATGGCATCGATGTGAGATATGTGACT
Found at i:70239155 original size:41 final size:41
Alignment explanation
Indices: 70239110--70239218 Score: 141
Period size: 41 Copynumber: 2.6 Consensus size: 41
70239100 GCATCAGTGA
70239110 GATATGTGAT-TCGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGATAT-GTGTAAGACCATAGCTGGGCTATGGCATC
* *
70239151 GATATATGATATGTGTAAGACCATAGCTGGGCTATGTCATC
1 GATATGTGATATGTGTAAGACCATAGCTGGGCTATGGCATC
* *
70239192 -ATTATGTGAAGATGTATAAGACCATAG
1 GA-TATGTG-ATATGTGTAAGACCATAG
70239219 TTGAACTATG
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
40 1 0.02
41 42 0.70
42 17 0.28
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (41 bp):
GATATGTGATATGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:70240389 original size:34 final size:34
Alignment explanation
Indices: 70240350--70240417 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
70240340 TTGAAAGAGA
70240350 GTTTGTCTCTAAAAAAGGAAGTGGTAGAAGAGTT
1 GTTTGTCTCTAAAAAAGGAAGTGGTAGAAGAGTT
70240384 GTTTGTCTCTAAAAAAGGAAGTGGTAGAAGAGTT
1 GTTTGTCTCTAAAAAAGGAAGTGGTAGAAGAGTT
70240418 CAACTCAGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.29
Consensus pattern (34 bp):
GTTTGTCTCTAAAAAAGGAAGTGGTAGAAGAGTT
Found at i:70244186 original size:40 final size:40
Alignment explanation
Indices: 70244078--70244187 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
70244068 ATTGAATGAT
* * * * *
70244078 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
70244118 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
70244158 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
70244188 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:70244202 original size:40 final size:39
Alignment explanation
Indices: 70244078--70244227 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
70244068 ATTGAATGAT
* * * * * * *
70244078 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
70244118 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
70244158 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
70244198 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
70244228 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:70252241 original size:40 final size:40
Alignment explanation
Indices: 70252133--70252242 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
70252123 ATTGAATGAT
* * * * *
70252133 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
70252173 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
70252213 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
70252243 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:70252257 original size:40 final size:39
Alignment explanation
Indices: 70252133--70252282 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
70252123 ATTGAATGAT
* * * * * * *
70252133 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
70252173 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
70252213 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
70252253 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
70252283 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:70260168 original size:56 final size:56
Alignment explanation
Indices: 70260061--70260168 Score: 128
Period size: 56 Copynumber: 1.9 Consensus size: 56
70260051 TCTTACATGT
* * * * *
70260061 AATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACTCGTACACATATAACGG
1 AATCACATATCGATGCCAATGTACCAAACAGGGTCTTACTCGCACAAATATAACGG
** *
70260117 AATCACATATCGATGCCAATGTATTAAAC-GTGGTCTTACTTGCACAAATATA
1 AATCACATATCGATGCCAATGTACCAAACAG-GGTCTTACTCGCACAAATATA
70260169 TCGATGCCAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
55 1 0.02
56 42 0.98
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (56 bp):
AATCACATATCGATGCCAATGTACCAAACAGGGTCTTACTCGCACAAATATAACGG
Found at i:70263402 original size:12 final size:12
Alignment explanation
Indices: 70263385--70263410 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70263375 CAAAACTTAG
70263385 TAATCTAACACA
1 TAATCTAACACA
70263397 TAATCTAACACA
1 TAATCTAACACA
70263409 TA
1 TA
70263411 TCTTTCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (12 bp):
TAATCTAACACA
Found at i:70264030 original size:27 final size:27
Alignment explanation
Indices: 70264000--70264097 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
70263990 ACCCTTAATC
70264000 GGTAAAATAACTGTTTTGCCTTTATGA
1 GGTAAAATAACTGTTTTGCCTTTATGA
* * *
70264027 GGTAAAATGACTGTTTTGCCCTTATGT
1 GGTAAAATAACTGTTTTGCCTTTATGA
* *
70264054 GGTAAAATGACTGTTCTGCCCTTT-T-A
1 GGTAAAATAACTGTTTTG-CCTTTATGA
*
70264080 TGGTAAGATAACTGTTTT
1 -GGTAAAATAACTGTTTT
70264098 ACCCCTATGT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
27 56 0.93
28 4 0.07
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTAAAATAACTGTTTTGCCTTTATGA
Found at i:70264058 original size:54 final size:54
Alignment explanation
Indices: 70264000--70264108 Score: 132
Period size: 54 Copynumber: 2.0 Consensus size: 54
70263990 ACCCTTAATC
* * * *
70264000 GGTAAAATAACTGTTTTG-CC-TTTATGAGGTAAAATGACTGTTTTGCCCTTATGT
1 GGTAAAATAACTGTTCTGCCCTTTTAT--GGTAAAATAACTGTTTTACCCCTATGT
* *
70264054 GGTAAAATGACTGTTCTGCCCTTTTATGGTAAGATAACTGTTTTACCCCTATGT
1 GGTAAAATAACTGTTCTGCCCTTTTATGGTAAAATAACTGTTTTACCCCTATGT
70264108 G
1 G
70264109 ATGTATATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 40 0.85
55 2 0.04
56 5 0.11
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (54 bp):
GGTAAAATAACTGTTCTGCCCTTTTATGGTAAAATAACTGTTTTACCCCTATGT
Found at i:70267569 original size:27 final size:27
Alignment explanation
Indices: 70267539--70267642 Score: 147
Period size: 27 Copynumber: 3.9 Consensus size: 27
70267529 ACCTTTAATC
70267539 GGTAAAATGACTATTTTTCCCTTATGA
1 GGTAAAATGACTATTTTTCCCTTATGA
*
70267566 GGTAAAATGACTATTTTACCCTTATGA
1 GGTAAAATGACTATTTTTCCCTTATGA
* *
70267593 GGTAAAATGACTATTTTGT-CTTTATGT
1 GGTAAAATGACTATTTT-TCCCTTATGA
* *
70267620 GTTAAAATGACTGTTTTTCCCTT
1 GGTAAAATGACTATTTTTCCCTT
70267643 TTATGGTAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 1 0.01
27 67 0.99
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (27 bp):
GGTAAAATGACTATTTTTCCCTTATGA
Found at i:70267651 original size:54 final size:54
Alignment explanation
Indices: 70267530--70267651 Score: 140
Period size: 54 Copynumber: 2.2 Consensus size: 54
70267520 AGTACCTGGA
70267530 CCTTTAATCGGTAAAATGACTATTTTTCCCTTATGAGGTAAAATGACTATTTTAC
1 CCTTTAAT-GGTAAAATGACTATTTTTCCCTTATGAGGTAAAATGACTATTTTAC
* * * * * *
70267585 CCTTATGA-GGTAAAATGACTATTTTGT-CTTTATGTGTTAAAATGACTGTTTTTC
1 CCTT-TAATGGTAAAATGACTATTTT-TCCCTTATGAGGTAAAATGACTATTTTAC
*
70267639 CCTTTTATGGTAA
1 CCTTTAATGGTAA
70267652 TGTTTTACCC
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
53 2 0.04
54 48 0.84
55 5 0.09
56 2 0.04
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.43
Consensus pattern (54 bp):
CCTTTAATGGTAAAATGACTATTTTTCCCTTATGAGGTAAAATGACTATTTTAC
Found at i:70267959 original size:18 final size:18
Alignment explanation
Indices: 70267933--70268024 Score: 107
Period size: 18 Copynumber: 5.2 Consensus size: 18
70267923 GGACTTGCAT
*
70267933 ACTGTTTACTGTTACTGC
1 ACTGCTTACTGTTACTGC
70267951 ACTGCTTACTGTTACTGC
1 ACTGCTTACTGTTACTGC
* *
70267969 ACTACTTACTATTACTGC
1 ACTGCTTACTGTTACTGC
*
70267987 ACT-ATTACTGTTACTGC
1 ACTGCTTACTGTTACTGC
** *
70268004 ACTATTTATTGTTACTG-
1 ACTGCTTACTGTTACTGC
70268021 ACTG
1 ACTG
70268025 TTTGCTTATA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
17 18 0.28
18 47 0.72
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (18 bp):
ACTGCTTACTGTTACTGC
Found at i:70268019 original size:35 final size:36
Alignment explanation
Indices: 70267937--70268024 Score: 126
Period size: 35 Copynumber: 2.5 Consensus size: 36
70267927 TTGCATACTG
*
70267937 TTTACTGTTACTGCACTGCTTACTGTTACTGCACTA
1 TTTACTGTTACTGCACTGATTACTGTTACTGCACTA
* *
70267973 CTTACTATTACTGCACT-ATTACTGTTACTGCACTA
1 TTTACTGTTACTGCACTGATTACTGTTACTGCACTA
*
70268008 TTTATTGTTACTG-ACTG
1 TTTACTGTTACTGCACTG
70268025 TTTGCTTATA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
34 3 0.07
35 27 0.60
36 15 0.33
ACGTcount: A:0.22, C:0.23, G:0.12, T:0.43
Consensus pattern (36 bp):
TTTACTGTTACTGCACTGATTACTGTTACTGCACTA
Found at i:70271010 original size:27 final size:27
Alignment explanation
Indices: 70270967--70271065 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
70270957 ACCTTTAATC
* *
70270967 GGTAAAATAACTATTTTGCCATTATGA
1 GGTAAAATGATTATTTTGCCATTATGA
* *
70270994 GGTAAAATGGTTGTTTTGTCC-TTATGA
1 GGTAAAATGATTATTTTG-CCATTATGA
*
70271021 GGTAAAATGATTATTTTGCCATTATGT
1 GGTAAAATGATTATTTTGCCATTATGA
*
70271048 GGTAAAATGACTATTTTG
1 GGTAAAATGATTATTTTG
70271066 TCCTTTTATG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.03
27 58 0.94
28 2 0.03
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTAAAATGATTATTTTGCCATTATGA
Found at i:70271026 original size:54 final size:54
Alignment explanation
Indices: 70270967--70271070 Score: 154
Period size: 54 Copynumber: 1.9 Consensus size: 54
70270957 ACCTTTAATC
** *
70270967 GGTAAAATAACTATTTTGCCATTATGAGGTAAAATGGTTGTTTTGTCCTTATGA
1 GGTAAAATAACTATTTTGCCATTATGAGGTAAAATGACTATTTTGTCCTTATGA
* * *
70271021 GGTAAAATGATTATTTTGCCATTATGTGGTAAAATGACTATTTTGTCCTT
1 GGTAAAATAACTATTTTGCCATTATGAGGTAAAATGACTATTTTGTCCTT
70271071 TTATGGTAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 44 1.00
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (54 bp):
GGTAAAATAACTATTTTGCCATTATGAGGTAAAATGACTATTTTGTCCTTATGA
Found at i:70271077 original size:27 final size:26
Alignment explanation
Indices: 70270958--70271091 Score: 83
Period size: 27 Copynumber: 5.0 Consensus size: 26
70270948 TGTACCTGAA
* *
70270958 CCTTTAATCGGTAAAATAACTATTTTG
1 CCTTTTAT-GGTAAAATGACTATTTTG
* ** *
70270985 CC-ATTATGAGGTAAAATGGTTGTTTTG
1 CCTTTTAT--GGTAAAATGACTATTTTG
* *
70271012 TCCTTATGA-GGTAAAATGATTATTTTG
1 -CCTT-TTATGGTAAAATGACTATTTTG
* *
70271039 CCATTATGTGGTAAAATGACTATTTTG
1 CC-TTTTATGGTAAAATGACTATTTTG
* *
70271066 TCCTTTTATGGTAAGATGACTGTTTT
1 -CCTTTTATGGTAAAATGACTATTTT
70271092 ACCCCTATGT
Statistics
Matches: 81, Mismatches: 19, Indels: 14
0.71 0.17 0.12
Matches are distributed among these distances:
26 5 0.06
27 70 0.86
28 4 0.05
30 2 0.02
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (26 bp):
CCTTTTATGGTAAAATGACTATTTTG
Found at i:70271079 original size:54 final size:54
Alignment explanation
Indices: 70270958--70271091 Score: 153
Period size: 54 Copynumber: 2.5 Consensus size: 54
70270948 TGTACCTGAA
* ** *
70270958 CCTTTAATCGGTAAAATAACTATTTTGCCATTATGAGGTAAAATGGTTGTTTTGT
1 CCTTTAAT-GGTAAAATGACTATTTTGCCATTATGAGGTAAAATGACTATTTTGT
* * *
70271013 CCTTATGA-GGTAAAATGATTATTTTGCCATTATGTGGTAAAATGACTATTTTGT
1 CCTT-TAATGGTAAAATGACTATTTTGCCATTATGAGGTAAAATGACTATTTTGT
* * *
70271067 CCTTTTATGGTAAGATGACTGTTTT
1 CCTTTAATGGTAAAATGACTATTTT
70271092 ACCCCTATGT
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
53 2 0.03
54 58 0.88
55 4 0.06
56 2 0.03
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (54 bp):
CCTTTAATGGTAAAATGACTATTTTGCCATTATGAGGTAAAATGACTATTTTGT
Found at i:70273564 original size:23 final size:23
Alignment explanation
Indices: 70273538--70273585 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
70273528 CTGTACGTAT
70273538 TCTTCTTCACTTATCTAGCCGAA
1 TCTTCTTCACTTATCTAGCCGAA
* * *
70273561 TCTTCTTTACTTCTTTAGCCGAA
1 TCTTCTTCACTTATCTAGCCGAA
70273584 TC
1 TC
70273586 ATAGCCTTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.19, C:0.29, G:0.08, T:0.44
Consensus pattern (23 bp):
TCTTCTTCACTTATCTAGCCGAA
Found at i:70276293 original size:65 final size:65
Alignment explanation
Indices: 70276189--70276319 Score: 219
Period size: 65 Copynumber: 2.0 Consensus size: 65
70276179 TATTTAAAGC
* *
70276189 ATTGAATGTTAACCTACCATTAATTGAACTTATTAAGAAAGTCCCAAAATACGCCAAAATTT-TA
1 ATTGAATGTTAACCTACCATTAATTGAACTAATTAAGAAAGTCCCAAAATACACC-AAATTTATA
70276253 A
65 A
*
70276254 ATTGAATGTTAACCTACCATTAATTGAACTAATTGAGAAAGTCCCAAAATACACCAAATTTATAA
1 ATTGAATGTTAACCTACCATTAATTGAACTAATTAAGAAAGTCCCAAAATACACCAAATTTATAA
70276319 A
1 A
70276320 GGATATCATG
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
64 6 0.10
65 56 0.90
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (65 bp):
ATTGAATGTTAACCTACCATTAATTGAACTAATTAAGAAAGTCCCAAAATACACCAAATTTATAA
Found at i:70280372 original size:66 final size:68
Alignment explanation
Indices: 70280296--70280482 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
70280286 TAGTACCACT
*
70280296 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
70280358 CACG
65 CACG
70280362 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
70280427 ATCACG
63 ATCACG
70280433 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
70280483 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:70280407 original size:71 final size:71
Alignment explanation
Indices: 70280319--70280482 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
70280309 CGATTTGTCT
70280319 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70280384 CTTTCA
66 CTTTCA
70280390 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
70280455 CTTTCA
66 CTTTCA
70280461 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
70280483 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:70280520 original size:71 final size:70
Alignment explanation
Indices: 70280319--70280516 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
70280309 CGATTTGTCT
* * *
70280319 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
70280384 CTTTCA
65 CTTTCA
* * *
70280390 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
70280455 CTTTCA
65 CTTTCA
* *
70280461 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
70280517 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:70283397 original size:87 final size:86
Alignment explanation
Indices: 70283147--70283398 Score: 468
Period size: 86 Copynumber: 2.9 Consensus size: 86
70283137 TGAAGCAATC
70283147 AAATGTTCCAATAAATGTAAAAAAATCCAAGAATTTAATATAATGTGACGATGAACGTTACATTT
1 AAATGTTCCAATAAATGTAAAAAAATCCAAGAATTTAATATAATGTGACGATGAACGTTACATTT
70283212 ATATGCTTTTTGTCACTAAAT
66 ATATGCTTTTTGTCACTAAAT
70283233 AAATGTTCCAATAAATGTAAAAAAATCCAAGAATTTAATATAATGTGACGATGAACGTTACATTT
1 AAATGTTCCAATAAATGTAAAAAAATCCAAGAATTTAATATAATGTGACGATGAACGTTACATTT
70283298 ATATGCTTTTTGTCACTAAAT
66 ATATGCTTTTTGTCACTAAAT
* * *
70283319 AAATGTTCCAATAAATGTAAAAAAACTCCAAGAATCTAATATAATGTGACGATGAACATTATATT
1 AAATGTTCCAATAAATGTAAAAAAA-TCCAAGAATTTAATATAATGTGACGATGAACGTTACATT
70283384 TATATGCTTTTTGTC
65 TATATGCTTTTTGTC
70283399 TTTCGCACTT
Statistics
Matches: 162, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
86 111 0.69
87 51 0.31
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.35
Consensus pattern (86 bp):
AAATGTTCCAATAAATGTAAAAAAATCCAAGAATTTAATATAATGTGACGATGAACGTTACATTT
ATATGCTTTTTGTCACTAAAT
Found at i:70286530 original size:40 final size:39
Alignment explanation
Indices: 70286365--70286548 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
70286355 AAATTGAATG
* * *
70286365 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
70286405 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
70286445 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
70286485 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
70286524 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
70286549 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:70286573 original size:80 final size:81
Alignment explanation
Indices: 70286405--70286593 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
70286395 GCTGGAAATT
* * * *
70286405 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
70286470 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
70286486 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
70286549 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
70286565 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
70286594 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:70296408 original size:17 final size:18
Alignment explanation
Indices: 70296366--70296414 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
70296356 AGTTGAAAAG
70296366 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
70296385 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
70296402 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
70296415 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:70297301 original size:40 final size:40
Alignment explanation
Indices: 70297235--70297401 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
70297225 AAATTGAATG
* * *
70297235 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
70297274 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
70297314 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
70297354 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
70297394 ATATCCGG
1 ATATCCGG
70297402 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:70299936 original size:29 final size:29
Alignment explanation
Indices: 70299897--70299970 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
70299887 GGTTGAGAGA
* *
70299897 ATGGCACTAAGTGTGCGGGCTTGAAA-TGC
1 ATGGCACTAAGTGTGCGAG-TTGAAAGTAC
*
70299926 ATGGCACTAAGTGTGCGAGTTTAAAGTAC
1 ATGGCACTAAGTGTGCGAGTTGAAAGTAC
70299955 ATGGCACTAAGTGTGC
1 ATGGCACTAAGTGTGC
70299971 ATGGTTGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGTTGAAAGTAC
Found at i:70300012 original size:2 final size:2
Alignment explanation
Indices: 70300007--70300037 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
70299997 GCGAACCCAC
*
70300007 TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70300038 TTTCTATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:70301634 original size:40 final size:40
Alignment explanation
Indices: 70301601--70301785 Score: 255
Period size: 40 Copynumber: 4.6 Consensus size: 40
70301591 GATATGGTCG
*
70301601 CTAGCACAAATGCCTTCGGGACTTAGCCAGG-ATATAGTAA
1 CTAGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAA
* *
70301641 CTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTAA
1 CTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAA
* * *
70301681 CTTGCAAAAATGCCTTCAGGACTTAGCCCGGAATTAGTAA
1 CTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAA
* * * *
70301721 CTCGCACAAATGCCTTCAGGACTTAGCCCGGAATTAATCA
1 CTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAA
*
70301761 CTAGCACAAATGTCTTCGGGACTTA
1 CTAGCACAAATGCCTTCGGGACTTA
70301786 ACCCCGTTAG
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 128 0.98
41 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (40 bp):
CTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAA
Found at i:70303141 original size:13 final size:13
Alignment explanation
Indices: 70303123--70303148 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70303113 AGGATGAAGC
70303123 CTTTTTTTTTTCT
1 CTTTTTTTTTTCT
70303136 CTTTTTTTTTTCT
1 CTTTTTTTTTTCT
70303149 AGGTACGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
CTTTTTTTTTTCT
Found at i:70304890 original size:46 final size:46
Alignment explanation
Indices: 70304840--70305015 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
70304830 TGTTTGGGCA
70304840 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
70304886 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
70304933 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70304979 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70305016 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70304995 original size:93 final size:93
Alignment explanation
Indices: 70304836--70305008 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
70304826 AGGATGTTTG
*
70304836 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
70304901 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
70304929 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
70304994 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
70305009 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:70310209 original size:46 final size:45
Alignment explanation
Indices: 70310156--70310331 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
70310146 TATTTGGGCA
70310156 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
70310202 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
70310249 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
70310295 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70310332 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:70310311 original size:93 final size:93
Alignment explanation
Indices: 70310152--70310323 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
70310142 AGGATATTTG
* *
70310152 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
70310217 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
70310245 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
70310310 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
70310324 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:70316663 original size:40 final size:40
Alignment explanation
Indices: 70316536--70316665 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
70316526 ATGCTGGAAA
* *
70316536 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
70316576 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
70316616 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70316656 TTATATCCGG
1 TTATATCCGG
70316666 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:70318958 original size:46 final size:45
Alignment explanation
Indices: 70318905--70319080 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
70318895 TATTTGGGCA
70318905 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
70318951 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
70318998 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
70319044 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70319081 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:70319060 original size:93 final size:93
Alignment explanation
Indices: 70318901--70319072 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
70318891 AGAATATTTG
* *
70318901 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
70318966 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
70318994 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
70319059 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
70319073 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:70330329 original size:21 final size:21
Alignment explanation
Indices: 70330305--70330353 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
70330295 AAGCTGTGAA
70330305 ATGGGTCTGGTCAAACGAGCT
1 ATGGGTCTGGTCAAACGAGCT
*
70330326 ATGGGTCTGGTCAAATGAGCT
1 ATGGGTCTGGTCAAACGAGCT
70330347 ATGGGTC
1 ATGGGTC
70330354 AGGATGTTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.22, C:0.16, G:0.35, T:0.27
Consensus pattern (21 bp):
ATGGGTCTGGTCAAACGAGCT
Found at i:70335924 original size:43 final size:43
Alignment explanation
Indices: 70335877--70335969 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
70335867 TACATGTAAG
* *
70335877 CACATATCGATG-CTACTGTCCCAGACAAGGTCTTATACGAGAA
1 CACATATCGATGCCAAC-GTCCCAGACAAGGTCTTACACGAGAA
* ** *
70335920 CACATATCGATGCCAACGTCCCATACGTGGTCTTACATGAGAA
1 CACATATCGATGCCAACGTCCCAGACAAGGTCTTACACGAGAA
70335963 CACATAT
1 CACATAT
70335970 TGGAAATCCT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 40 0.93
44 3 0.07
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
CACATATCGATGCCAACGTCCCAGACAAGGTCTTACACGAGAA
Found at i:70339694 original size:20 final size:20
Alignment explanation
Indices: 70339669--70339711 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
70339659 TCGTTTGAAA
70339669 AGTAGTTTACGGCACATCGG
1 AGTAGTTTACGGCACATCGG
70339689 AGTAGTTTACGGCACATCGG
1 AGTAGTTTACGGCACATCGG
70339709 AGT
1 AGT
70339712 CTTTAACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (20 bp):
AGTAGTTTACGGCACATCGG
Found at i:70340283 original size:25 final size:25
Alignment explanation
Indices: 70340235--70340436 Score: 117
Period size: 25 Copynumber: 8.0 Consensus size: 25
70340225 GCCATTATTA
* * *
70340235 CGATAATACGATTGACACAAAGCCAT
1 CGATAATA-GATCGGCACATAGCCAT
*
70340261 CGATAATAGATCGGCACATAGCCAC
1 CGATAATAGATCGGCACATAGCCAT
* * *
70340286 CAAT-ATCATATCGATGCA-A-AGTCAT
1 CGATAAT-AGATCG--GCACATAGCCAT
* *
70340311 CGATAACAGATCAGCACATAGCCAT
1 CGATAATAGATCGGCACATAGCCAT
* * *
70340336 CAAT-ATCATATCGGCACAAAGCCAT
1 CGATAAT-AGATCGGCACATAGCCAT
* *
70340361 CGATAACAAATCGGCACATAGCCAT
1 CGATAATAGATCGGCACATAGCCAT
* * * *
70340386 CAAT-ATCATATTGGCACAAAGCCAT
1 CGATAAT-AGATCGGCACATAGCCAT
* * * *
70340411 TGATAACAGATTGGTACATAGCCAT
1 CGATAATAGATCGGCACATAGCCAT
70340436 C
1 C
70340437 AATGATGGTA
Statistics
Matches: 132, Mismatches: 34, Indels: 21
0.71 0.18 0.11
Matches are distributed among these distances:
23 3 0.02
24 5 0.04
25 109 0.83
26 12 0.09
27 3 0.02
ACGTcount: A:0.39, C:0.25, G:0.15, T:0.21
Consensus pattern (25 bp):
CGATAATAGATCGGCACATAGCCAT
Found at i:70340328 original size:50 final size:50
Alignment explanation
Indices: 70340248--70340439 Score: 267
Period size: 50 Copynumber: 3.8 Consensus size: 50
70340238 TAATACGATT
* *
70340248 GACACAAAGCCATCGATAATAGATCGGCACATAGCCACCAATATCATATC
1 GACACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCATATC
** * *
70340298 GATGCAAAGTCATCGATAACAGATCAGCACATAGCCATCAATATCATATC
1 GACACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCATATC
* * *
70340348 GGCACAAAGCCATCGATAACAAATCGGCACATAGCCATCAATATCATATT
1 GACACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCATATC
* * * *
70340398 GGCACAAAGCCATTGATAACAGATTGGTACATAGCCATCAAT
1 GACACAAAGCCATCGATAACAGATCGGCACATAGCCATCAAT
70340440 GATGGTAATA
Statistics
Matches: 125, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 125 1.00
ACGTcount: A:0.40, C:0.25, G:0.15, T:0.20
Consensus pattern (50 bp):
GACACAAAGCCATCGATAACAGATCGGCACATAGCCATCAATATCATATC
Found at i:70340587 original size:41 final size:41
Alignment explanation
Indices: 70340527--70340645 Score: 175
Period size: 41 Copynumber: 2.9 Consensus size: 41
70340517 AAAGCCATCG
* * * *
70340527 GTGGATCCACGGTCATCAAGCAACCATGCGATCCTTAATCA
1 GTGGATCCACGATCGTCAAGCAACCATGTGATCCTCAATCA
* *
70340568 GTGGATCCACAATCGTCAAGCAACCATGTGATCCTCAATCG
1 GTGGATCCACGATCGTCAAGCAACCATGTGATCCTCAATCA
*
70340609 GTGGATCCACGATCGTCAAGCAACCAAGTGATCCTCA
1 GTGGATCCACGATCGTCAAGCAACCATGTGATCCTCA
70340646 TTTTCTTACT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (41 bp):
GTGGATCCACGATCGTCAAGCAACCATGTGATCCTCAATCA
Found at i:70340947 original size:27 final size:27
Alignment explanation
Indices: 70340885--70341255 Score: 248
Period size: 27 Copynumber: 13.7 Consensus size: 27
70340875 TTTCACCCTA
* * * * *
70340885 CAAGGGTGTTTTGGTAAATCTACAAAAC
1 CAAGGGTATTTCGGTAATTTTAC-AAAT
*
70340913 CAAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
70340940 CAATGGTATTTCTGTAATTTTTGAC-AGT
1 CAAGGGTATTTCGGTAA-TTTT-ACAAAT
* ** **
70340968 TAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * *
70340995 CAGGGGTATTTCTGTAATTTTCCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * * *
70341022 TAAAGGTATTTCGATAATTTTCCAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
70341049 C-AGTGGTATTTTC-GTAATTTTACAAAT
1 CAAG-GGTA-TTTCGGTAATTTTACAAAT
** * *
70341076 TGAGGGTATTTTGGTAATTTTACAAGTT
1 CAAGGGTATTTCGGTAATTTTACAA-AT
* * *
70341104 GAA-GGTATTTCGATAATTTTACAAGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
** * **
70341130 TGAGGGTATTTCGATAATTTTACAGGT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
70341157 CAAGGGTATTTCGGTAATTTCACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * * * *
70341184 TAGGGGTATTTTGGTAATTTTACTAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* ** *
70341211 CAAGGGTA-TTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
70341237 CAAGGATATTTCAGTAATT
1 CAAGGGTATTTCGGTAATT
70341256 CTACCCTACA
Statistics
Matches: 274, Mismatches: 59, Indels: 21
0.77 0.17 0.06
Matches are distributed among these distances:
26 26 0.09
27 200 0.73
28 46 0.17
29 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAT
Found at i:70341049 original size:54 final size:54
Alignment explanation
Indices: 70340914--70341230 Score: 286
Period size: 54 Copynumber: 5.9 Consensus size: 54
70340904 CTACAAAACC
* * *
70340914 AAGGGTATTTCGGTAATTTTACAAACCAATGGTATTTCTGTAATTTTTGAC-AGTT
1 AAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCTGTAA-TTTT-ACAAATT
** ** * *
70340969 AAGGGTATTTTTGTAATTTTGTAAATCAGGGGTATTTCTGTAATTTTCCAAATT
1 AAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTACAAATT
* * *
70341023 AAAGGTATTTCGATAATTTTCCAAATC-AGTGGTATTT-TCGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAATCAAG-GGTATTTCT-GTAATTTTACAAATT
* * * * *
70341077 GAGGGTATTTTGGTAATTTTACAAGTTGAA-GGTATTTC-GATAATTTTACAAGTT
1 AAGGGTATTTCGGTAATTTTACAA-ATCAAGGGTATTTCTG-TAATTTTACAAATT
* * ** * *
70341131 GAGGGTATTTCGATAATTTTACAGGTCAAGGGTATTTCGGTAATTTCACAAATT
1 AAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTACAAATT
* * * * *
70341185 AGGGGTATTTTGGTAATTTTACTAACCAAGGGTA-TTCAGTAATTTT
1 AAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTT
70341231 GTAAACCAAG
Statistics
Matches: 211, Mismatches: 42, Indels: 20
0.77 0.15 0.07
Matches are distributed among these distances:
53 17 0.08
54 155 0.73
55 38 0.18
56 1 0.00
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTACAAATT
Found at i:70341230 original size:26 final size:27
Alignment explanation
Indices: 70341197--70341255 Score: 77
Period size: 26 Copynumber: 2.2 Consensus size: 27
70341187 GGGTATTTTG
*
70341197 GTAATTTTACT-AACCAAGGGTA-TTCA
1 GTAATTTT-CTAAACCAAGGATATTTCA
*
70341223 GTAATTTTGTAAACCAAGGATATTTCA
1 GTAATTTTCTAAACCAAGGATATTTCA
70341250 GTAATT
1 GTAATT
70341256 CTACCCTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 1 0.03
26 18 0.62
27 10 0.34
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (27 bp):
GTAATTTTCTAAACCAAGGATATTTCA
Found at i:70341274 original size:27 final size:27
Alignment explanation
Indices: 70341244--70341319 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 27
70341234 AACCAAGGAT
70341244 ATTTCAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
70341271 ATTTCAGTAATTCCACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
70341298 ATTTCAGTAATACTAGCCTACA
1 ATTTCAGTAATTCTACCCTACA
70341320 TATATGAGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:70348983 original size:13 final size:13
Alignment explanation
Indices: 70348898--70348984 Score: 54
Period size: 13 Copynumber: 6.6 Consensus size: 13
70348888 ACAAAATCAT
*
70348898 TATGTGGAATGGA
1 TATGTGAAATGGA
*
70348911 TATATGAAATGGA
1 TATGTGAAATGGA
70348924 TAT-T-AGAATGGA
1 TATGTGA-AATGGA
*
70348936 TACT-TGAAATGAAA
1 TA-TGTGAAATG-GA
* * *
70348950 AATGTCAAATGTCA
1 TATGTGAAATG-GA
*
70348964 AATGTGAAATGGA
1 TATGTGAAATGGA
70348977 TATGTGAA
1 TATGTGAA
70348985 GTTTGAGTTG
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
11 1 0.02
12 9 0.15
13 29 0.49
14 20 0.34
ACGTcount: A:0.43, C:0.03, G:0.24, T:0.30
Consensus pattern (13 bp):
TATGTGAAATGGA
Found at i:70352719 original size:27 final size:27
Alignment explanation
Indices: 70352689--70352750 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
70352679 GATGGGTCAT
*
70352689 AAATACCCTCGGT-TTGGAAAATGACCG
1 AAATACCCT-GGTAGTGGAAAATGACCG
* *
70352716 AAATACCCTTGTAGTGTAAAATGACCG
1 AAATACCCTGGTAGTGGAAAATGACCG
*
70352743 TAATACCC
1 AAATACCC
70352751 CTGTATGGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (27 bp):
AAATACCCTGGTAGTGGAAAATGACCG
Found at i:70353021 original size:22 final size:22
Alignment explanation
Indices: 70352996--70353046 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
70352986 GTTGCTGTGA
70352996 TGTCTACGGTGTTGACCCGTCC
1 TGTCTACGGTGTTGACCCGTCC
**
70353018 TGTCTACGGTGTTGAGTCGTCC
1 TGTCTACGGTGTTGACCCGTCC
70353040 TGTCTAC
1 TGTCTAC
70353047 AAGGTTTAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.10, C:0.27, G:0.27, T:0.35
Consensus pattern (22 bp):
TGTCTACGGTGTTGACCCGTCC
Found at i:70361313 original size:79 final size:81
Alignment explanation
Indices: 70361212--70361396 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
70361202 ACGACTCGCT
** * *
70361212 CAAATGCCTTCGGGACGAAGCCCGG-TTATAGTGACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAATGCCTTC-GGATCCTAACCC
* *
70361275 GGGTTTAGTAACTT-GCA
64 GGATATAGTAACTTAGCA
* **
70361292 CAAATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCACGAATGCCTTCGGATCCTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
*
70361356 ATATAGTCACTTAGCA
66 ATATAGTAACTTAGCA
70361372 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70361397 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAATGCCTTCGGATCCTAACCCGG
ATATAGTAACTTAGCA
Found at i:70361396 original size:40 final size:39
Alignment explanation
Indices: 70361205--70361396 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
70361195 GGATATAACG
* ** * *
70361205 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTG
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
70361245 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAGTA
* * *
70361285 ACTTGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTA
* * * *
70361324 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AAAGCCTTCGGGA-CTTAGCCCGGATATAGTA
*
70361364 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAAGCCTTCGGGACTTAGCCCGGA
70361397 CATCATTCGA
Statistics
Matches: 121, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 79 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:70364507 original size:28 final size:28
Alignment explanation
Indices: 70364442--70364540 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
70364432 CATGAGATTG
* * *
70364442 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
70364471 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
70364499 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
70364527 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70364541 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:70372475 original size:28 final size:28
Alignment explanation
Indices: 70372410--70372508 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
70372400 CATGAGATTG
* * *
70372410 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
70372439 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
70372467 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
70372495 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70372509 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:70375800 original size:2 final size:2
Alignment explanation
Indices: 70375793--70375819 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
70375783 TGATGCCTTG
70375793 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
70375820 CTAGATGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.