Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 231 of 425
Found at i:70376137 original size:40 final size:40
Alignment explanation
Indices: 70376079--70376223 Score: 222
Period size: 40 Copynumber: 3.6 Consensus size: 40
70376069 GTATGATATT
70376079 TGGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGC
*
70376119 TGGAATTGTATCCAGGCTTAAAGACCCACAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGC
* * *
70376159 TGGAATTGTATCCGGGCATAAAGACCCGCAGGCT-TCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCACAGGCTAT-ATGC
*
70376199 TGGAATGGTATCCGGG-TTAAAGACC
1 TGGAATTGTATCCGGGCTTAAAGACC
70376224 TGTAGGCTTG
Statistics
Matches: 97, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
39 9 0.09
40 88 0.91
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCACAGGCTATATGC
Found at i:70377280 original size:12 final size:13
Alignment explanation
Indices: 70377263--70377295 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
70377253 AGGTTTTTGC
70377263 ACACGGGCTA-GG
1 ACACGGGCTAGGG
70377275 ACACGGGCTAGGG
1 ACACGGGCTAGGG
70377288 ACACGGGC
1 ACACGGGC
70377296 GTGTGCCAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.24, C:0.27, G:0.42, T:0.06
Consensus pattern (13 bp):
ACACGGGCTAGGG
Found at i:70382915 original size:29 final size:29
Alignment explanation
Indices: 70382853--70382970 Score: 141
Period size: 29 Copynumber: 4.1 Consensus size: 29
70382843 ACATACCTGT
* * * *
70382853 ATATGGCCCACTAGACCC-AATTATATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
70382881 ACATGGCCCATTAGGCCAAAATCACATTC
1 ATATGGCCCATTAGGCCCAAATCACATTC
* *
70382910 ATATGGCCCTTTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATTC
*
70382939 ATGTGGCCCATTAGGCCCAAATCACATT-
1 ATATGGCCCATTAGGCCCAAATCACATTC
70382967 ATAT
1 ATAT
70382971 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 17 0.22
29 59 0.78
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTC
Found at i:70384817 original size:13 final size:13
Alignment explanation
Indices: 70384799--70384828 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
70384789 CTGCTAAAAG
70384799 GACACGGCCATGT
1 GACACGGCCATGT
*
70384812 GACACGGCCGTGT
1 GACACGGCCATGT
70384825 GACA
1 GACA
70384829 TGCCCGTGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.30, G:0.33, T:0.13
Consensus pattern (13 bp):
GACACGGCCATGT
Found at i:70390154 original size:40 final size:40
Alignment explanation
Indices: 70390088--70390238 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
70390078 AAATTGAATG
* * *
70390088 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
70390127 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
70390167 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
70390207 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
70390239 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:70390252 original size:40 final size:40
Alignment explanation
Indices: 70390125--70390254 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
70390115 ATGCTGGAAA
* * * *
70390125 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
70390165 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
70390205 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
70390245 TTATATCCGG
1 TTATATCCGG
70390255 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:70398140 original size:40 final size:40
Alignment explanation
Indices: 70398074--70398224 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
70398064 AAATTGAATG
* * *
70398074 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
70398113 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
70398153 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
70398193 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
70398225 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:70398238 original size:40 final size:40
Alignment explanation
Indices: 70398111--70398240 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
70398101 ATGCTGGAAA
* * * *
70398111 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
70398151 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
70398191 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
70398231 TTATATCCGG
1 TTATATCCGG
70398241 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:70412502 original size:14 final size:14
Alignment explanation
Indices: 70412483--70412510 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70412473 TTTTTAAAAA
70412483 ATTTTAAATATTAT
1 ATTTTAAATATTAT
70412497 ATTTTAAATATTAT
1 ATTTTAAATATTAT
70412511 TAAACATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTTTAAATATTAT
Found at i:70412574 original size:22 final size:22
Alignment explanation
Indices: 70412549--70412592 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
70412539 TAGTCATATA
70412549 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
70412571 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
70412593 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:70412628 original size:13 final size:14
Alignment explanation
Indices: 70412612--70412653 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
70412602 TTTCAATTTT
70412612 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
70412625 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
70412640 ATTTTAAATAATAT
1 ATTTT-AATAATAT
70412654 TATTCATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:70412638 original size:16 final size:16
Alignment explanation
Indices: 70412616--70412652 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
70412606 AATTTTATTT
70412616 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
70412633 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
70412648 TAATA
1 TAATA
70412653 TTATTCATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:70417935 original size:23 final size:23
Alignment explanation
Indices: 70417909--70417966 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
70417899 ATCGCAGTGT
70417909 AGCTGCTAATAGTAACACAGCAA
1 AGCTGCTAATAGTAACACAGCAA
* *
70417932 AGCTGCTAATAGTAACGCCGCAA
1 AGCTGCTAATAGTAACACAGCAA
70417955 AGCTGCTAATAG
1 AGCTGCTAATAG
70417967 CGGTAAACGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (23 bp):
AGCTGCTAATAGTAACACAGCAA
Found at i:70420455 original size:40 final size:40
Alignment explanation
Indices: 70420398--70420661 Score: 349
Period size: 40 Copynumber: 6.7 Consensus size: 40
70420388 TCGAATGATG
* * * *
70420398 TCCGGGCTAA-ATCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
70420438 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
70420478 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
70420518 TCCGAACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
70420558 TCCGGACAAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** * *
70420598 TCCGGGTTAAG-TCCGAAGGCATTTGTGCGTGCTACTATAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
70420638 -CCGGGCTATG-TCCGAAGGTATTTG
1 TCCGGACTAAGATCCGAAGGCATTTG
70420662 AACGAGTAGC
Statistics
Matches: 206, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 45 0.22
40 152 0.74
41 9 0.04
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70420691 original size:78 final size:79
Alignment explanation
Indices: 70420450--70420694 Score: 255
Period size: 80 Copynumber: 3.1 Consensus size: 79
70420440 CGGACTAAGA
* * **
70420450 TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 TCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACAAAGATCCGAAGGCATTTGAACGAGTTACT
*** *
70420515 AAATCCGAACTAAGA
66 AAATCCGGGTTAA-C
* **
70420530 TCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACAAAGATCCGAAGGCATTTGTGCGAGTTACT
1 TCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACAAAGATCCGAAGGCATTTGAACGAGTTACT
*
70420595 AAATCCGGGTTAAG
66 AAATCCGGGTTAAC
* * * * *
70420609 TCCGAAGGCATTTGTGCGTGCTACTATAA-CCGGGCTATG-TCCGAAGGTATTTGAACGAG-TAG
1 TCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACAAAGATCCGAAGGCATTTGAACGAGTTA-
* *
70420671 CTATAT-CTGGTTAAAC
64 CTAAATCCGGGTT-AAC
70420687 TCCGAAGG
1 TCCGAAGG
70420695 TACGTGATTC
Statistics
Matches: 146, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
77 7 0.05
78 32 0.22
79 31 0.21
80 76 0.52
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
TCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACAAAGATCCGAAGGCATTTGAACGAGTTACT
AAATCCGGGTTAAC
Found at i:70428711 original size:40 final size:40
Alignment explanation
Indices: 70428487--70428683 Score: 258
Period size: 40 Copynumber: 5.0 Consensus size: 40
70428477 TCGAATGATG
* * * *
70428487 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
70428527 TCCGGACTAAGATCC-AAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
70428566 TCCGGACTAAGATCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
70428606 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
70428646 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
70428684 TAACCGGGCT
Statistics
Matches: 142, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 28 0.20
40 113 0.80
41 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70428725 original size:40 final size:40
Alignment explanation
Indices: 70428488--70428730 Score: 119
Period size: 40 Copynumber: 6.1 Consensus size: 40
70428478 CGAATGATGT
** * *
70428488 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGCT-ACTATAA
* ** *
70428528 CCGGACTAAGAT-CC-AAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* * ** *
70428566 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGTTACTA-AA
1 -CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* ** * *
70428606 TCCGGACTAAGAT-CCGAAGGCATTTGTGCAAGTTACTA-AA
1 -CCGGGCTAAG-TCCCGAAGGCATTTGAACGAGCTACTATAA
* **
70428646 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
* * *
70428687 CCGGGCTATGTCCCGAAGGTATTTGAACGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTA-CTATAA
70428727 CCGG
1 CCGG
70428731 TTAAACTCCG
Statistics
Matches: 179, Mismatches: 16, Indels: 16
0.85 0.08 0.08
Matches are distributed among these distances:
38 1 0.01
39 27 0.15
40 148 0.83
41 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGCTACTATAA
Found at i:70428729 original size:80 final size:79
Alignment explanation
Indices: 70428494--70428734 Score: 226
Period size: 80 Copynumber: 3.0 Consensus size: 79
70428484 ATGTCCGGGC
* * ** *
70428494 TAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATATCCGGACTAAGATCC-AAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACA
*
70428556 AGTTACTAAATCCGGAC
64 AGTTACTAAATCCGG-T
* * **
70428573 TAAGAT-CTGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCAA
1 TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACAA
70428637 GTTACTAAATCCGGGT
65 GTTACTAAATCC-GGT
* * * *
70428653 TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACG
1 TAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACA
*
70428716 AG-TAGCTATATCCGGT
64 AGTTA-CTAAATCCGGT
70428732 TAA
1 TAA
70428735 ACTCCGAAGG
Statistics
Matches: 139, Mismatches: 14, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
79 43 0.31
80 92 0.66
81 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACAAG
TTACTAAATCCGGT
Found at i:70428730 original size:120 final size:119
Alignment explanation
Indices: 70428487--70428718 Score: 267
Period size: 120 Copynumber: 1.9 Consensus size: 119
70428477 TCGAATGATG
* *
70428487 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCAAGGCATTTG
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCAAGGCATTTG
* * **
70428552 TGCGAGTTACTAAATCCGGACTAAGATCTGAAGGCATTTGTGCGAGTTACTAAA
66 TGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
* **
70428606 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CC-AAGGCA
* * *
70428668 TTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGT
62 TTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
70428719 AGCTATATCC
Statistics
Matches: 95, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
118 1 0.01
119 39 0.41
120 53 0.56
121 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCAAGGCATTTG
TGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:70431679 original size:40 final size:41
Alignment explanation
Indices: 70431606--70431797 Score: 250
Period size: 40 Copynumber: 4.8 Consensus size: 41
70431596 GGATATAACC
* * * * * *
70431606 ACTCGCAC-AAGGCCGTCGGGTCTTAGCTCGGATA-TGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATTAGTA
* * *
70431645 GCTAGCACAAATGCCTTTGGGACTTAGCCCGGATA-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATTAGTA
*
70431685 ACTCGTACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATTAGTA
*
70431725 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATTAGTA
70431765 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
70431798 CTTAACCCCG
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 9 0.07
40 124 0.92
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (41 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATTAGTA
Found at i:70433154 original size:12 final size:12
Alignment explanation
Indices: 70433137--70433161 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70433127 GAGGATGAAG
70433137 TCTTTTTTTTTC
1 TCTTTTTTTTTC
70433149 TCTTTTTTTTTC
1 TCTTTTTTTTTC
70433161 T
1 T
70433162 TCTAGGTACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TCTTTTTTTTTC
Found at i:70440912 original size:17 final size:18
Alignment explanation
Indices: 70440870--70440918 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
70440860 AGTTGAAAAG
70440870 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
70440889 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
70440906 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
70440919 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:70441803 original size:40 final size:40
Alignment explanation
Indices: 70441737--70441903 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
70441727 AAATTGAATG
* * *
70441737 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
70441776 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
70441816 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
70441856 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
70441896 ATATCCGG
1 ATATCCGG
70441904 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:70448916 original size:17 final size:18
Alignment explanation
Indices: 70448874--70448922 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
70448864 AGTTGAAAAG
70448874 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
70448893 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
70448910 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
70448923 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:70449807 original size:40 final size:40
Alignment explanation
Indices: 70449741--70449907 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
70449731 AAATTGAATG
* * *
70449741 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
70449780 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
70449820 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
70449860 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
70449900 ATATCCGG
1 ATATCCGG
70449908 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:70453513 original size:40 final size:39
Alignment explanation
Indices: 70453468--70453597 Score: 145
Period size: 40 Copynumber: 3.3 Consensus size: 39
70453458 CGGAACATAA
70453468 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
70453508 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * *
70453548 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
70453588 CCGGATATAA
1 CCGGATATAA
70453598 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
38 1 0.01
40 71 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:70453612 original size:40 final size:40
Alignment explanation
Indices: 70453484--70453634 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
70453474 ATAACCATGT
* * *
70453484 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
** * *
70453524 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
70453564 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
70453604 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
70453635 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 15 0.16
40 76 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:70453618 original size:80 final size:79
Alignment explanation
Indices: 70453484--70453634 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
70453474 ATAACCATGT
*
70453484 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
70453549 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * * * *
70453564 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
70453627 CCGGATAT
64 CCGGATAT
70453635 CATTCAATTT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 17 0.27
80 46 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:70461091 original size:31 final size:31
Alignment explanation
Indices: 70461054--70461116 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
70461044 TCAACTTCTA
70461054 AAATCATACTTCATCAAAGCATTTCTCAAGC
1 AAATCATACTTCATCAAAGCATTTCTCAAGC
*
70461085 AAATCATATTTCATCAAAGCATTTCTCAAGC
1 AAATCATACTTCATCAAAGCATTTCTCAAGC
70461116 A
1 A
70461117 TTTATACTCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.30
Consensus pattern (31 bp):
AAATCATACTTCATCAAAGCATTTCTCAAGC
Found at i:70466046 original size:27 final size:28
Alignment explanation
Indices: 70466016--70466077 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 28
70466006 AAAATGATTG
* *
70466016 AAATACCCCT-GATTTGTGAAATTATCA
1 AAATACCCCTCAATTTGTGAAATTACCA
* *
70466043 AAATA-CCCTCAATTTTTGAAATTACCG
1 AAATACCCCTCAATTTGTGAAATTACCA
70466070 AAATACCC
1 AAATACCC
70466078 TTGTAGGGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 4 0.14
27 23 0.79
28 2 0.07
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.31
Consensus pattern (28 bp):
AAATACCCCTCAATTTGTGAAATTACCA
Found at i:70466078 original size:27 final size:27
Alignment explanation
Indices: 70466027--70466078 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
70466017 AATACCCCTG
*
70466027 ATTTGTGAAATTATCAAAATACCCTCA
1 ATTTGTGAAATTACCAAAATACCCTCA
* *
70466054 ATTTTTGAAATTACCGAAATACCCT
1 ATTTGTGAAATTACCAAAATACCCT
70466079 TGTAGGGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (27 bp):
ATTTGTGAAATTACCAAAATACCCTCA
Found at i:70466105 original size:27 final size:26
Alignment explanation
Indices: 70466075--70466145 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 26
70466065 TACCGAAATA
70466075 CCCTTGTAGGGTATAATGACCGTTTTG
1 CCCTTGTAGGGTA-AATGACCGTTTTG
*** * *
70466102 CCCTAAAAGAGTAAAATGACTGTTTTG
1 CCCTTGTAGGGT-AAATGACCGTTTTG
70466129 CCCTTGT-GGGTAAATGA
1 CCCTTGTAGGGTAAATGA
70466146 TTGACTTGGC
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
25 6 0.18
26 3 0.09
27 24 0.71
28 1 0.03
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (26 bp):
CCCTTGTAGGGTAAATGACCGTTTTG
Found at i:70468882 original size:43 final size:43
Alignment explanation
Indices: 70468814--70468899 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
70468804 GTTACATGAA
* * *
70468814 TCGCATCCATTATGAACTTGAACCTCTTAACAAGCTCGGATGC
1 TCGCATCCATAATGAACTAGAACCTCTCAACAAGCTCGGATGC
*
70468857 TCGCATCCATAATGAACTCAG-ACCTCTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACT-AGAACCTCTCAACAAGCTCGGATGC
70468900 CACATAGATC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 37 0.97
44 1 0.03
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (43 bp):
TCGCATCCATAATGAACTAGAACCTCTCAACAAGCTCGGATGC
Found at i:70472731 original size:80 final size:80
Alignment explanation
Indices: 70472521--70472785 Score: 351
Period size: 80 Copynumber: 3.3 Consensus size: 80
70472511 GCTACTCGTT
* **
70472521 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
* *
70472584 AGAATTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
* *
70472601 CAAATGCCTTCGTG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
70472665 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGCA
* *
70472680 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCACACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
* * *
70472744 GATATAGTCACTTAGCA
65 GATTTAGTAAC-TCGCA
70472761 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70472786 CATCATTGAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
78 4 0.02
79 64 0.39
80 85 0.52
81 11 0.07
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATTTAGTAACTCGCA
Found at i:70472785 original size:40 final size:40
Alignment explanation
Indices: 70472502--70472785 Score: 314
Period size: 40 Copynumber: 7.1 Consensus size: 40
70472492 CGGAATTTAA
** *
70472502 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70472542 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70472582 CCAGA-ATTAGTAACTCGCACAAATGCCTTCGTG-CTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70472621 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
70472661 CCGGATTTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
70472701 CCGGATTTAGTAACTCACACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
70472741 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
70472781 CCGGA
1 CCGGA
70472786 CATCATTGAA
Statistics
Matches: 218, Mismatches: 19, Indels: 14
0.87 0.08 0.06
Matches are distributed among these distances:
38 1 0.00
39 36 0.17
40 171 0.78
41 10 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70479453 original size:39 final size:39
Alignment explanation
Indices: 70479378--70479560 Score: 294
Period size: 39 Copynumber: 4.7 Consensus size: 39
70479368 CCGCACAAAG
*
70479378 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* * *
70479418 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
* *
70479457 GCCTTCGGGCTTAGCCTGGGTATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
*
70479496 GCCTTCGGGCTTAGCCTGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
70479535 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
70479561 TCGAACATTC
Statistics
Matches: 132, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 123 0.93
40 9 0.07
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:70479500 original size:78 final size:78
Alignment explanation
Indices: 70479338--70479560 Score: 302
Period size: 78 Copynumber: 2.8 Consensus size: 78
70479328 TCGTTCAAAC
* * ** * ** *
70479338 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATC
70479403 ACAATTTGCACAATT
64 ACAATTTGCACAATT
* *
70479418 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCTGGGTATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
70479483 AATTTGCACAATT
66 AATTTGCACAATT
* * * *
70479496 GCCTTCGGGCTTAGCCTGGATATCACAATTTGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
70479561 TCGAACATTC
Statistics
Matches: 127, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
78 86 0.68
79 32 0.25
80 9 0.07
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (78 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
AATTTGCACAATT
Found at i:70483972 original size:40 final size:39
Alignment explanation
Indices: 70483942--70484162 Score: 243
Period size: 40 Copynumber: 5.6 Consensus size: 39
70483932 GCTACTCGTT
*
70483942 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
70483982 CAAATGCCTTCGAGACTTAACCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
*
70484022 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
* *
70484061 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TATAGTAACTCGCA
* ** *
70484101 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCATTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TATAGT-AACTCGCA
70484142 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
70484163 GGACTTCATT
Statistics
Matches: 161, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 36 0.22
40 111 0.69
41 12 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:70484053 original size:79 final size:80
Alignment explanation
Indices: 70483942--70484132 Score: 264
Period size: 79 Copynumber: 2.4 Consensus size: 80
70483932 GCTACTCGTT
*
70483942 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCG-GATCTTAACCCG
70484006 GAATTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* **
70484022 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
70484085 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* *
70484101 CAAATGCCTTC-GGATCTTAGTCCGGATATAGT
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGT
70484133 CATTTAGCAC
Statistics
Matches: 100, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
78 5 0.05
79 66 0.66
80 28 0.28
81 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
AATTAGTAACTCGCA
Found at i:70484126 original size:119 final size:120
Alignment explanation
Indices: 70483942--70484162 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
70483932 GCTACTCGTT
70483942 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGG
*
70484007 A-ATTAGT-AACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
66 ATA-TAGTCAACTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * **
70484061 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTCG-GATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACC
**
70484123 CGGATATAGTCATTTAGCACAAAGCCTTCGGGACTTAGCC
63 CGGATATAGTCAACTAGCACAAAGCCTTCGGGACTTAGCC
70484163 GGACTTCATT
Statistics
Matches: 89, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
118 5 0.06
119 65 0.73
120 19 0.21
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGG
ATATAGTCAACTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:70484165 original size:79 final size:78
Alignment explanation
Indices: 70483942--70484165 Score: 249
Period size: 79 Copynumber: 2.8 Consensus size: 78
70483932 GCTACTCGTT
* * * * *
70483942 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCTTCGGGACTT-AGCCG
70484006 GAATTAGTAACTCGCA
63 GAATTAGTAACTCGCA
*
70484022 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGA-CTTAG-CCGG
*
70484086 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * **
70484101 CAAATGCCTTCGGATCTTAGTCCGG-ATATAGTCATTTAGCACAAA-GCCTTCGGGACTTAGCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGT-AACTAGCACAAATGCCTTCGGGACTTAGCCG
70484164 GA
63 GA
70484166 CTTCATTTGA
Statistics
Matches: 127, Mismatches: 10, Indels: 15
0.84 0.07 0.10
Matches are distributed among these distances:
78 3 0.02
79 73 0.57
80 39 0.31
81 12 0.09
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCGGAA
TTAGTAACTCGCA
Found at i:70493325 original size:12 final size:12
Alignment explanation
Indices: 70493308--70493332 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70493298 AAGGCAAATG
70493308 ACATCATCAAAA
1 ACATCATCAAAA
70493320 ACATCATCAAAA
1 ACATCATCAAAA
70493332 A
1 A
70493333 TTCACCAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.24, G:0.00, T:0.16
Consensus pattern (12 bp):
ACATCATCAAAA
Found at i:70499864 original size:43 final size:42
Alignment explanation
Indices: 70499817--70499958 Score: 135
Period size: 43 Copynumber: 3.2 Consensus size: 42
70499807 TCCCAAACAT
*
70499817 GGTCTTACATGTAATCACATATCAATGCCACTGTCTCAGACAG
1 GGTCTTACATGTAATCACATATCAATGCCACTGTCCCAGA-AG
* * *
70499860 GGTCTTAC-TCGTAAACACATATTGTACAATGCCAAC-ATCCCAGATG
1 GGTCTTACAT-GTAATCACATA---T-CAATGCC-ACTGTCCCAGAAG
* *
70499906 TAGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGATAG
1 -GGTCTTACATGTAATCACATATCAATGCCACTGTCCCAGA-AG
70499950 GGTCTTACA
1 GGTCTTACA
70499959 CGAAATCTCT
Statistics
Matches: 79, Mismatches: 10, Indels: 20
0.72 0.09 0.18
Matches are distributed among these distances:
42 3 0.04
43 39 0.49
44 2 0.03
46 2 0.03
47 30 0.38
48 3 0.04
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
GGTCTTACATGTAATCACATATCAATGCCACTGTCCCAGAAG
Found at i:70499937 original size:90 final size:90
Alignment explanation
Indices: 70499784--70499957 Score: 276
Period size: 90 Copynumber: 1.9 Consensus size: 90
70499774 TCGGATTGTC
* *
70499784 ACACATATTGTACAATGCCAACTTCCCAAACATGGTCTTACATGTAATCACATATCAATGCCACT
1 ACACATATTGTACAATGCCAACATCCCAAACATAGTCTTACATGTAATCACATATCAATGCCACT
*
70499849 GTCTCAGACAGGGTCTTACTCGTAA
66 GTCCCAGACAGGGTCTTACTCGTAA
* ** *
70499874 ACACATATTGTACAATGCCAACATCCCAGATGTAGTCTTACATGTAATCACATATCGATGCCACT
1 ACACATATTGTACAATGCCAACATCCCAAACATAGTCTTACATGTAATCACATATCAATGCCACT
*
70499939 GTCCCAGATAGGGTCTTAC
66 GTCCCAGACAGGGTCTTAC
70499958 ACGAAATCTC
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 76 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (90 bp):
ACACATATTGTACAATGCCAACATCCCAAACATAGTCTTACATGTAATCACATATCAATGCCACT
GTCCCAGACAGGGTCTTACTCGTAA
Found at i:70499977 original size:43 final size:43
Alignment explanation
Indices: 70499927--70500022 Score: 122
Period size: 43 Copynumber: 2.2 Consensus size: 43
70499917 GTAATCACAT
* * * *
70499927 ATCGATGCCACTGTCCCAGATAGGGTCTTACACGAA-ATCTCTA
1 ATCGATGCCACTGTCCCAGACACGATCTTACAC-AATATCTCAA
* *
70499970 ATTGATGCCAGTGTCCCAGACACGATCTTACACAATATCTCAA
1 ATCGATGCCACTGTCCCAGACACGATCTTACACAATATCTCAA
70500013 ATCGATGCCA
1 ATCGATGCCA
70500023 ACGTCCTAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 2 0.04
43 43 0.96
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
ATCGATGCCACTGTCCCAGACACGATCTTACACAATATCTCAA
Found at i:70503541 original size:12 final size:12
Alignment explanation
Indices: 70503526--70503622 Score: 51
Period size: 12 Copynumber: 8.1 Consensus size: 12
70503516 TAAATATTAG
70503526 ATTAAATTTAAT
1 ATTAAATTTAAT
* *
70503538 ATTAAATCTACT
1 ATTAAATTTAAT
70503550 A-T--ATTTAAT
1 ATTAAATTTAAT
70503559 ATTTATAAATTTAAT
1 A--T-TAAATTTAAT
*
70503574 ATTTAATTTAAT
1 ATTAAATTTAAT
*
70503586 -TTAACATTAAGAT
1 ATTAA-ATTTA-AT
* * *
70503599 AATCACTTTAAT
1 ATTAAATTTAAT
70503611 ATTAAA-TTAAT
1 ATTAAATTTAAT
70503622 A
1 A
70503623 AAGTACTATT
Statistics
Matches: 62, Mismatches: 14, Indels: 19
0.65 0.15 0.20
Matches are distributed among these distances:
9 6 0.10
11 10 0.16
12 29 0.47
13 7 0.11
14 2 0.03
15 8 0.13
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.47
Consensus pattern (12 bp):
ATTAAATTTAAT
Found at i:70505560 original size:5 final size:5
Alignment explanation
Indices: 70505550--70505581 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
70505540 AAACATACTA
*
70505550 GTTTG GTTTG GTTTG GTTTG GTTTA GTTTG GT
1 GTTTG GTTTG GTTTG GTTTG GTTTG GTTTG GT
70505582 GATTTTGGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.03, C:0.00, G:0.38, T:0.59
Consensus pattern (5 bp):
GTTTG
Found at i:70509027 original size:28 final size:28
Alignment explanation
Indices: 70508958--70509058 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
70508948 GACAAGATTG
* * * *
70508958 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
70508988 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70509016 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
70509045 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70509059 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70509052 original size:29 final size:28
Alignment explanation
Indices: 70508987--70509058 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
70508977 AAAATTGTAC
*
70508987 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
70509015 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
70509044 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
70509059 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:70517115 original size:28 final size:28
Alignment explanation
Indices: 70517046--70517146 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
70517036 GACAAGATTG
* * * *
70517046 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
70517076 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
70517104 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
70517133 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70517147 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:70517140 original size:29 final size:28
Alignment explanation
Indices: 70517075--70517146 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
70517065 AAAATTGTAC
*
70517075 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
70517103 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
70517132 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
70517147 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:70519890 original size:16 final size:16
Alignment explanation
Indices: 70519841--70519917 Score: 81
Period size: 16 Copynumber: 4.9 Consensus size: 16
70519831 TTTTCCTCGT
70519841 TTTCAATTTCTTTTTC
1 TTTCAATTTCTTTTTC
70519857 TTT---TTCTCTCTTTT-
1 TTTCAATT-TCT-TTTTC
70519871 TTTCAATTTCTTTTTC
1 TTTCAATTTCTTTTTC
*
70519887 TTTCAATTTTTTTCTTC
1 TTTCAATTTCTTT-TTC
*
70519904 TATCAATTTCTTTT
1 TTTCAATTTCTTTT
70519918 ATTTTTCGGT
Statistics
Matches: 51, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
13 2 0.04
14 6 0.12
15 8 0.16
16 19 0.37
17 16 0.31
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTCAATTTCTTTTTC
Found at i:70524641 original size:27 final size:27
Alignment explanation
Indices: 70524595--70524836 Score: 306
Period size: 27 Copynumber: 9.0 Consensus size: 27
70524585 AAACATATAA
*
70524595 CACAT-AGGGTCAAAACAGTCAATTTAC
1 CACATAAGGG-CAAAACAGTCATTTTAC
* *
70524622 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
70524649 CACATAAGAGTAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
70524676 CACATAAGGGCAAAACTGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
70524703 CACATAAGGGCAAAACTGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
70524730 CACATAAGGGTAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
70524757 CACATAAAGGAAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
70524784 CTCATAAGGGCAGAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
70524811 CACGTAAGGGCAAAAGAATCATTTTA
1 CACATAAGGGCAAAACAGTCATTTTA
70524837 TCAATTAGGC
Statistics
Matches: 187, Mismatches: 27, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
27 183 0.98
28 4 0.02
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:70528486 original size:27 final size:27
Alignment explanation
Indices: 70528456--70528717 Score: 267
Period size: 27 Copynumber: 9.7 Consensus size: 27
70528446 TATCACATGG
* *
70528456 GGGCAAAATAGTCAATTTACCATATAA
1 GGGCAAAATAGTCATTTTACCACATAA
* ** * *
70528483 GGGCGAAGCAATCATTTTACTACATAA
1 GGGCAAAATAGTCATTTTACCACATAA
* * *
70528510 GAGCAAAATAGTTATTTTTCCACATAA
1 GGGCAAAATAGTCATTTTACCACATAA
* *
70528537 GAGCAAAATAGTAATTTTACCACATAA
1 GGGCAAAATAGTCATTTTACCACATAA
* *
70528564 GGCCAAAATAGTCATTTTACCACAAAA
1 GGGCAAAATAGTCATTTTACCACATAA
* *
70528591 GGGCAAAACAATCATTTTACCACA-AA
1 GGGCAAAATAGTCATTTTACCACATAA
* * *
70528617 -GGCAAAACAGTTATTTTACTACATAA
1 GGGCAAAATAGTCATTTTACCACATAA
* *
70528643 GGGCAAAATAATCATTTTACCACAAAAAA
1 GGGCAAAATAGTCATTTTACCAC--ATAA
70528672 GGGCAAAATAGTCATTTTACCACATAA
1 GGGCAAAATAGTCATTTTACCACATAA
* * * *
70528699 GTGAAAAACAATCATTTTA
1 GGGCAAAATAGTCATTTTA
70528718 TCAATTAGGG
Statistics
Matches: 193, Mismatches: 38, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
25 20 0.10
26 4 0.02
27 144 0.75
29 25 0.13
ACGTcount: A:0.44, C:0.17, G:0.13, T:0.26
Consensus pattern (27 bp):
GGGCAAAATAGTCATTTTACCACATAA
Found at i:70528679 original size:108 final size:108
Alignment explanation
Indices: 70528456--70528717 Score: 348
Period size: 108 Copynumber: 2.4 Consensus size: 108
70528446 TATCACATGG
* * * * * *
70528456 GGGCAAAATAGTCAATTTACCATATAAGGGCGAAGCAATCATTTTACTACATAAGAGCAAAATAG
1 GGGCAAAATAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGAGCAAAACAG
* * *
70528521 TTATTTTTCCACATAAGAGCAAAATAGTAATTTTACCACATAA
66 TTATTTTACCACATAAGAGCAAAATAATAATTTTACCACAAAA
* *
70528564 GGCCAAAATAGTCATTTTACCACAAAAGGGCAAAACAATCATTTTACCACA-AAG-GCAAAACAG
1 GGGCAAAATAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGAGCAAAACAG
* * *
70528627 TTATTTTACTACATAAGGGCAAAATAATCATTTTACCACAAAAAA
66 TTATTTTACCACATAAGAGCAAAATAATAATTTTACCAC--AAAA
* *
70528672 GGGCAAAATAGTCATTTTACCACATAAGTGAAAAACAATCATTTTA
1 GGGCAAAATAGTCATTTTACCACATAAGGGCAAAACAATCATTTTA
70528718 TCAATTAGGG
Statistics
Matches: 134, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
106 42 0.31
107 3 0.02
108 89 0.66
ACGTcount: A:0.44, C:0.17, G:0.13, T:0.26
Consensus pattern (108 bp):
GGGCAAAATAGTCATTTTACCACATAAGGGCAAAACAATCATTTTACCACATAAGAGCAAAACAG
TTATTTTACCACATAAGAGCAAAATAATAATTTTACCACAAAA
Found at i:70532084 original size:40 final size:39
Alignment explanation
Indices: 70532022--70532268 Score: 259
Period size: 40 Copynumber: 6.2 Consensus size: 39
70532012 CGGATGATAA
* * *
70532022 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-ACTATA-T
* *
70532062 TCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * *
70532102 CCGGGCTAAGTCCCGAAGTCGTTTGTGCGAGATATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
*
70532142 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* *
70532181 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAT
* * * *
70532221 CCGGGTTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAT
70532261 CC-GGCTAA
1 CCGGGCTAA
70532269 ACTCCGAAGG
Statistics
Matches: 180, Mismatches: 22, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 43 0.24
40 133 0.74
41 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAT
Found at i:70532225 original size:79 final size:80
Alignment explanation
Indices: 70532063--70532245 Score: 269
Period size: 79 Copynumber: 2.3 Consensus size: 80
70532053 TGGCTAATTT
* * *
70532063 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGTCGTTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
* * *
70532128 GCGAGATATTATATC
66 GCAAGATACTATAAC
* *
70532143 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
70532207 GCAAGTTACTATAAC
66 GCAAGATACTATAAC
*
70532222 CGGGTTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
70532246 AGCTAGTGGC
Statistics
Matches: 93, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 58 0.62
80 35 0.38
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCAAGATACTATAAC
Found at i:70532278 original size:79 final size:79
Alignment explanation
Indices: 70532063--70532268 Score: 263
Period size: 79 Copynumber: 2.6 Consensus size: 79
70532053 TGGCTAATTT
* * *
70532063 CGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGTCGTTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
* * *
70532128 GCGAGATATTATATC
65 GCAAGATACTATAAC
*
70532143 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
*
70532207 GCAAGTTACTATAAC
65 GCAAGATACTATAAC
* * * *
70532222 CGGGTTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
70532269 ACTCCGAAGG
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 72 0.65
80 37 0.34
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CAAGATACTATAAC
Found at i:70534940 original size:126 final size:126
Alignment explanation
Indices: 70534688--70534957 Score: 303
Period size: 126 Copynumber: 2.2 Consensus size: 126
70534678 ACAGGGGTTT
* * ** * * *
70534688 TCACACGGCC-AGACACATGCTAATGTCATTGGCCTGTGTCCCTCACACGGCCACGACACACCCG
1 TCACACGGCCAAGGCACACGCCCATGTCATTGGCCTGGGTCCCTCACACGACCACGACACACCCA
* * * * * *
70534752 TGTCCTTGCACGTGTGTAAAATCCTGGGTATTTTGTTTCTGACGTCAGCAAGCTCATTATG
66 TGTCCTAGCACATGTGCAAAAACCTGAGTATTTTGTTTCTGACGTCAGCAAGCTCATAATG
* * ** *
70534813 TCA-AGCGGCCAAGGCACACGCCCATGTCATTGGCCTGGGTCCCTCACATGACCATGACATGCTC
1 TCACA-CGGCCAAGGCACACGCCCATGTCATTGGCCTGGGTCCCTCACACGACCACGACACACCC
* * *
70534877 ATGTCCTAGC-CTATGTGCAAAAACCTGAGTATTTTGTTTCTGATGTCAGTATGCTCATAATG
65 ATGTCCTAGCAC-ATGTGCAAAAACCTGAGTATTTTGTTTCTGACGTCAGCAAGCTCATAATG
*
70534939 TCACACGGTCAAGGCACAC
1 TCACACGGCCAAGGCACAC
70534958 ACCCGTGTAC
Statistics
Matches: 119, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
124 1 0.01
125 9 0.08
126 108 0.91
127 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (126 bp):
TCACACGGCCAAGGCACACGCCCATGTCATTGGCCTGGGTCCCTCACACGACCACGACACACCCA
TGTCCTAGCACATGTGCAAAAACCTGAGTATTTTGTTTCTGACGTCAGCAAGCTCATAATG
Found at i:70536086 original size:18 final size:18
Alignment explanation
Indices: 70536045--70536089 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
70536035 TGGCTTGCTC
*
70536045 AATTGCAAAAAAGGACTA
1 AATTGCAAAAAAGGACAA
*
70536063 AATTGCATAAAAGGA-AA
1 AATTGCAAAAAAGGACAA
70536080 AAGTTGCAAA
1 AA-TTGCAAA
70536090 CTAGTGCCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 3 0.13
18 20 0.87
ACGTcount: A:0.56, C:0.09, G:0.18, T:0.18
Consensus pattern (18 bp):
AATTGCAAAAAAGGACAA
Found at i:70537195 original size:48 final size:48
Alignment explanation
Indices: 70537084--70537262 Score: 146
Period size: 47 Copynumber: 3.8 Consensus size: 48
70537074 ACTTGTGTGT
* * *
70537084 GCTA-GTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CGCATTATGGA-A
1 GCTATGTGTAAGACCATGTCTAGGACATGGCATCGGCACG-A-GA-CGATA
*
70537130 GCTAT-TGTAAAACCATGTCTAGGACATGGCATCGGCACTGAGACGAGT-
1 GCTATGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-GAGACGA-TA
* *
70537178 GCTATGTGTAAGA-CATGTCTAGGACAT-GCATCAGCTACGAGATGATA
1 GCTATGTGTAAGACCATGTCTAGGACATGGCATCGGC-ACGAGACGATA
* *
70537225 G-TCA-GTGTAAGACCATGTTTGGGACATGGCATCGGCAC
1 GCT-ATGTGTAAGACCATGTCTAGGACATGGCATCGGCAC
70537263 CTTACCTATA
Statistics
Matches: 110, Mismatches: 10, Indels: 25
0.76 0.07 0.17
Matches are distributed among these distances:
46 20 0.18
47 44 0.40
48 37 0.34
49 8 0.07
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTATGTGTAAGACCATGTCTAGGACATGGCATCGGCACGAGACGATA
Found at i:70538636 original size:55 final size:55
Alignment explanation
Indices: 70538577--70538696 Score: 136
Period size: 55 Copynumber: 2.2 Consensus size: 55
70538567 CGTGTGGGAC
* * * * *
70538577 ACTGACTTTAAGGCCCGACCATGACACACGCCCGTGTGGCCTACCCGTGGGCAAT
1 ACTGACTTTAAGACACGACCATGACACACACCCGTGTGGCCTAACCGTGGACAAT
* * * *
70538632 ACTGAC-TTATAGACACGGCTATGGCACACATCCGTGTGGCCTAACCGTGGACAAT
1 ACTGACTTTA-AGACACGACCATGACACACACCCGTGTGGCCTAACCGTGGACAAT
70538687 ACTGA-TTTAA
1 ACTGACTTTAA
70538697 AAATTTAAGT
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
54 4 0.07
55 50 0.93
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (55 bp):
ACTGACTTTAAGACACGACCATGACACACACCCGTGTGGCCTAACCGTGGACAAT
Found at i:70539660 original size:91 final size:94
Alignment explanation
Indices: 70539556--70539774 Score: 234
Period size: 94 Copynumber: 2.4 Consensus size: 94
70539546 GTGTATACGT
**
70539556 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAAACT-TA-GCCAATG-CATGTCTTAGA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAAACTCTACGCCAATGCCATGTCCCAGA
*
70539618 C-ACGTCTTACATTG-GCTAACATCAT-CGA
66 CGACGTCTTACA-CGAGCTAACATCATGC-A
* * * ** *
70539646 GGCTGATGCATGTCCCAAACATGTGTTACACTGGCACTGACCTCTACGCCAATGCCATGTCCCAG
1 -GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAAACTCTACGCCAATGCCATGTCCCAG
** * *
70539711 ACGTGGTCTTACACGAGCTATCATGATGCA
65 ACGACGTCTTACACGAGCTAACATCATGCA
* *
70539741 GCTGATACATGTCCCAGACACGTCTTACACTAGC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC
70539775 CCTCGTCTCA
Statistics
Matches: 104, Mismatches: 18, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
91 36 0.35
92 2 0.02
93 7 0.07
94 40 0.38
95 18 0.17
96 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (94 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAAACTCTACGCCAATGCCATGTCCCAGA
CGACGTCTTACACGAGCTAACATCATGCA
Found at i:70543316 original size:46 final size:46
Alignment explanation
Indices: 70543210--70543423 Score: 304
Period size: 46 Copynumber: 4.6 Consensus size: 46
70543200 TGTCTTCGAC
** * * *
70543210 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC----ATATATCTGAT
*
70543260 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCT-ATT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTGA-T
70543306 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTGAT
70543352 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTGAT
* *
70543398 ATGGACTTATATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
70543424 CTGTCCTGTC
Statistics
Matches: 154, Mismatches: 8, Indels: 8
0.91 0.05 0.05
Matches are distributed among these distances:
45 1 0.01
46 122 0.79
47 1 0.01
50 30 0.19
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTGAT
Found at i:70545107 original size:122 final size:122
Alignment explanation
Indices: 70544887--70545107 Score: 318
Period size: 122 Copynumber: 1.8 Consensus size: 122
70544877 GAATTATGTG
* * * * * * *
70544887 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
70544952 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
*
70545009 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
70545074 GCTAAGTCCCGAAGAC-ATTTATGCTGGAAATTAT
66 GCTAAGTCCCGAAGACGA-TTATGCTAGAAATTAT
70545108 ATCCGGGTTA
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
121 1 0.01
122 85 0.99
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (122 bp):
AAATGAAACATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATTTGTGTTTGAGCCTTAGTAACGA
Found at i:70545231 original size:40 final size:40
Alignment explanation
Indices: 70545104--70545233 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
70545094 ATGCTGGAAA
* *
70545104 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
70545144 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
70545184 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70545224 TTATATCCGG
1 TTATATCCGG
70545234 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:70553200 original size:40 final size:40
Alignment explanation
Indices: 70553073--70553202 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
70553063 ATGCTGGAAA
* *
70553073 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
70553113 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
70553153 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70553193 TTATATCCGG
1 TTATATCCGG
70553203 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:70555148 original size:31 final size:31
Alignment explanation
Indices: 70555102--70555162 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
70555092 TAGCACAAGT
*
70555102 TGTCTAACATGATTTAAAACCTCATATTCTG
1 TGTCTAACATAATTTAAAACCTCATATTCTG
*
70555133 TGTCTAGCATAATTTAAAACCTCATATTCT
1 TGTCTAACATAATTTAAAACCTCATATTCT
70555163 ATCATAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (31 bp):
TGTCTAACATAATTTAAAACCTCATATTCTG
Found at i:70558794 original size:46 final size:46
Alignment explanation
Indices: 70558727--70558895 Score: 275
Period size: 46 Copynumber: 3.7 Consensus size: 46
70558717 AATGCCATAT
* *
70558727 ATATATCTAATATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC
1 ATATATCTGATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC
* *
70558773 ATATATCTGATATGGACTTACAAGGCTCATTCCTGTCTCCAGAGCC
1 ATATATCTGATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC
* *
70558819 ATATGTTTGATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC
1 ATATATCTGATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC
*
70558865 ATATATCTGATATGGACTTATATGGCTCATT
1 ATATATCTGATATGGACTTACATGGCTCATT
70558896 TATGTCCTGT
Statistics
Matches: 112, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 112 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (46 bp):
ATATATCTGATATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC
Found at i:70559506 original size:31 final size:31
Alignment explanation
Indices: 70559468--70559530 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
70559458 TAGCACAAGT
70559468 TGTCTAACATAATTTAAAACCTCATATTCTA
1 TGTCTAACATAATTTAAAACCTCATATTCTA
70559499 TGTCTAACATAATTTAAAACCTCATATTCTA
1 TGTCTAACATAATTTAAAACCTCATATTCTA
70559530 T
1 T
70559531 CATAAAACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.40
Consensus pattern (31 bp):
TGTCTAACATAATTTAAAACCTCATATTCTA
Found at i:70564159 original size:55 final size:54
Alignment explanation
Indices: 70564097--70564215 Score: 143
Period size: 55 Copynumber: 2.2 Consensus size: 54
70564087 CGTGTGCGAC
* * * *
70564097 ACTGACTTTAGGGCACGGCCATGACACACGCCCGTGTGGCCT-ACTCATGGGCAAT
1 ACTGACTTTA-GACACAGCCATGACACACACCCGTGTGGCCTAAC-CATGGACAAT
* *
70564152 ACTGACTTATAGACACAGCTATGGCACACACCCGTGTGGCCTAACCATGGACAAT
1 ACTGACTT-TAGACACAGCCATGACACACACCCGTGTGGCCTAACCATGGACAAT
70564207 ACTGA-TTTA
1 ACTGACTTTA
70564216 AAAATTTAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
53 2 0.04
54 2 0.04
55 48 0.86
56 4 0.07
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (54 bp):
ACTGACTTTAGACACAGCCATGACACACACCCGTGTGGCCTAACCATGGACAAT
Found at i:70571872 original size:24 final size:24
Alignment explanation
Indices: 70571843--70571918 Score: 100
Period size: 24 Copynumber: 3.2 Consensus size: 24
70571833 TACTATGGCA
70571843 GTGCGATTTACTATAGCACTATGT
1 GTGCGATTTACTATAGCACTATGT
*
70571867 GTGCGATTTACTATGGCACTATGT
1 GTGCGATTTACTATAGCACTATGT
** *
70571891 GTGCGAACATAATA-AGCACTATGT
1 GTGCG-ATTTACTATAGCACTATGT
70571915 GTGC
1 GTGC
70571919 AACGTTTGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 41 0.89
25 5 0.11
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (24 bp):
GTGCGATTTACTATAGCACTATGT
Found at i:70588368 original size:45 final size:46
Alignment explanation
Indices: 70588272--70588444 Score: 200
Period size: 45 Copynumber: 3.9 Consensus size: 46
70588262 TTTTCTCAAA
* * *
70588272 TCACCGGCATT-TCA-CCTGCTAGGATCG--AGGCCCGATTA-TCATT
1 TCACCGGCATTAT-AGCCTGCTAGGCTCGAAAGGCCCGAATAGT-ATC
*
70588315 TCATCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAGTATC
* *
70588360 TCACCGGCATTATAGCCTGCTAGGC-CCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAGTATC
* *
70588405 TTACCGGCATAATAGCCTGCTAGGCTC-AAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATA
70588445 TAATACCAGC
Statistics
Matches: 114, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
43 11 0.10
44 17 0.15
45 83 0.73
46 3 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (46 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAAGGCCCGAATAGTATC
Found at i:70588485 original size:38 final size:38
Alignment explanation
Indices: 70588437--70588541 Score: 156
Period size: 38 Copynumber: 2.8 Consensus size: 38
70588427 GGCTCAAAGG
* * * *
70588437 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGAATTAA
*
70588475 CCTGGATATAATACCAGCACGAAGCCTGCGGGAATTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGAATTAA
*
70588513 CCCGGATATATTACCAGCACGAAGCCTGC
1 CCCGGATATAATACCAGCACGAAGCCTGC
70588542 AGTCTTTAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 60 1.00
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGAATTAA
Found at i:70588952 original size:42 final size:42
Alignment explanation
Indices: 70588828--70588944 Score: 144
Period size: 45 Copynumber: 2.7 Consensus size: 42
70588818 ACATAACATT
*
70588828 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAA
1 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGAA
* * * *
70588871 TAATATTTCACCGGCATCATAGCCTACTAAGCTCAAAGCCCGAA
1 T--CATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAA
* *
70588915 TCATTTCATCGACATTATAGCCTGCTAGGC
1 TCATTTCACCGGCATTATAGCCTGCTAGGC
70588945 CCGAAGCCTG
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
42 23 0.38
43 1 0.02
44 7 0.11
45 30 0.49
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (42 bp):
TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAA
Found at i:70595503 original size:40 final size:40
Alignment explanation
Indices: 70595424--70595666 Score: 310
Period size: 40 Copynumber: 6.1 Consensus size: 40
70595414 CAGGATTTAA
* * *
70595424 CCGGATATAGCT-ACTCGCTC-AATGCCTTCAGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
70595463 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70595503 CCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
70595543 CCGAATGTAATAACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
70595583 CCGGATGTAATAACTCGCACAAATACCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * **
70595623 CCGAATATAGTCACTAGTGCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
70595663 CCGG
1 CCGG
70595667 TTATCATCCG
Statistics
Matches: 180, Mismatches: 22, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
38 1 0.01
39 17 0.09
40 162 0.90
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70603305 original size:40 final size:40
Alignment explanation
Indices: 70603246--70603468 Score: 320
Period size: 40 Copynumber: 5.6 Consensus size: 40
70603236 CTACTCGTTC
* *
70603246 AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* *
70603286 AATGCCTTCGGGACTTAGCCCAGATATAGTAGCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
70603326 AATGCCTTCGGCACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * *
70603366 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
* * * *
70603406 AATTCCTTCGGGACTTAGCCCGGATATAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
70603446 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
70603469 TTATCATCCG
Statistics
Matches: 164, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 164 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACA
Found at i:70605462 original size:40 final size:40
Alignment explanation
Indices: 70605341--70605485 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
70605331 GTCGCACGAA
*
70605341 TGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-
1 TGCCTTCGGGTCTTAGCCCGGATATAATAAC-CAGCAC-AAT
*** *
70605381 TGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATAACCAGCACAAT
* ** *
70605421 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATAATAACCAGCACAAT
* *
70605461 TGTCTTCGGGGCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
70605486 CATTCAATTT
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.02
40 86 0.98
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATAATAACCAGCACAAT
Found at i:70610091 original size:2 final size:2
Alignment explanation
Indices: 70610084--70610118 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
70610074 TTGGCTGTCT
70610084 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
70610119 TCGAATAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:70610896 original size:49 final size:49
Alignment explanation
Indices: 70610769--70610985 Score: 361
Period size: 49 Copynumber: 4.5 Consensus size: 49
70610759 CCCTTCGGGA
* *
70610769 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70610816 CTTATCAC--ATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70610863 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70610912 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70610961 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
70610986 TGTACAGACT
Statistics
Matches: 158, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.01
47 49 0.31
49 108 0.68
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70612290 original size:2 final size:2
Alignment explanation
Indices: 70612245--70612281 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
70612235 TAAGGCATAC
70612245 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
70612282 CCTATATATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:70614338 original size:28 final size:28
Alignment explanation
Indices: 70614307--70614443 Score: 114
Period size: 29 Copynumber: 4.8 Consensus size: 28
70614297 ACTGACCGAT
**
70614307 CTCGCACACATAGTGCTCGGTTGGAGAA
1 CTCGCACACATAGTGCTCGGTTACAGAA
* ** * *
70614335 CTCGCACACACAGTGCCTCATTTACCGAT
1 CTCGCACACATAGTG-CTCGGTTACAGAA
*
70614364 CTCGCTCACATAGTGCTCGGTTA-AGGAA
1 CTCGCACACATAGTGCTCGGTTACA-GAA
* * ** * *
70614392 TTCGCACACACAGTGCCTCAATTACTGAT
1 CTCGCACACATAGTG-CTCGGTTACAGAA
70614421 CTCGCACACATAGTGCTCGGTTA
1 CTCGCACACATAGTGCTCGGTTA
70614444 AAGGAATTCA
Statistics
Matches: 81, Mismatches: 24, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
28 40 0.49
29 41 0.51
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (28 bp):
CTCGCACACATAGTGCTCGGTTACAGAA
Found at i:70614374 original size:57 final size:57
Alignment explanation
Indices: 70614301--70614449 Score: 228
Period size: 57 Copynumber: 2.6 Consensus size: 57
70614291 GTGCCCACTG
* *
70614301 ACCGATCTCGCACACATAGTGCTCGGTT-GGAGAACTCGCACACACAGTGCCTCATTT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAG-GAACTCGCACACACAGTGCCTCAATT
* *
70614358 ACCGATCTCGCTCACATAGTGCTCGGTTAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAGGAACTCGCACACACAGTGCCTCAATT
*
70614415 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAA
1 ACCGATCTCGCACACATAGTGCTCGGTT-AAGGAA
70614450 TTCATACGGT
Statistics
Matches: 84, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
57 77 0.92
58 7 0.08
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (57 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAGGAACTCGCACACACAGTGCCTCAATT
Found at i:70614572 original size:43 final size:43
Alignment explanation
Indices: 70614496--70614701 Score: 346
Period size: 43 Copynumber: 4.9 Consensus size: 43
70614486 CATCGGCATT
* *
70614496 AAGCCTGCTAGG-ACGAAGACCC-AATACATATCACAGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
*
70614537 AAGCCTGCTAGGCTCGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
* *
70614580 AAGCCTGCTAGACTCGAAGGCCCGAATACATATCACCGGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
70614623 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCA-A
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
70614665 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACC
70614702 AGCATAACTG
Statistics
Matches: 157, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
41 12 0.08
42 46 0.29
43 99 0.63
ACGTcount: A:0.33, C:0.32, G:0.22, T:0.13
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACA
Found at i:70614791 original size:40 final size:42
Alignment explanation
Indices: 70614684--70614857 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 42
70614674 AGGCACGAAG
* * * * *
70614684 GCCCGAATACATATCACCAGCA-TAACTGCTCTTCGGGACCTG
1 GCCCGGATATATATCACCAGCACGAA-TGCTCTTCGGGACTTA
* * * * * *
70614726 GTCCGG--ATACATCACTAGCATGAATGCTCTTCGAGATTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* *
70614766 GCCCGGATGTA-A-CACCAGCACGAATGCTCTACGGGACTTA
1 GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
* * *
70614806 ACCTGGATATATATATCGCCAGCACGAATGCTCTTCGGGACTTA
1 GCCCGG--ATATATATCACCAGCACGAATGCTCTTCGGGACTTA
70614850 GCCCGGAT
1 GCCCGGAT
70614858 CATCGTCGAG
Statistics
Matches: 101, Mismatches: 24, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
40 55 0.54
41 3 0.03
42 12 0.12
43 1 0.01
44 30 0.30
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (42 bp):
GCCCGGATATATATCACCAGCACGAATGCTCTTCGGGACTTA
Found at i:70616041 original size:2 final size:2
Alignment explanation
Indices: 70616034--70616061 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
70616024 TTGGCTGTCT
70616034 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
70616062 CCTTCGAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:70616853 original size:49 final size:49
Alignment explanation
Indices: 70616716--70616931 Score: 343
Period size: 49 Copynumber: 4.5 Consensus size: 49
70616706 CCCTTCGGGA
* *
70616716 CTTATCACAT-T-TATACACTTTCACATTCATCACATTGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70616763 CTTATCAC--ATATATACACCTTCAC-TTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70616809 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70616858 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70616907 CTTATCACATATATATACACTTTCA
1 CTTATCACATATATATACACTTTCA
70616932 TGTACAGACT
Statistics
Matches: 154, Mismatches: 10, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
46 29 0.19
47 20 0.13
48 15 0.10
49 90 0.58
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70618234 original size:2 final size:2
Alignment explanation
Indices: 70618191--70618225 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
70618181 TAAGGCATAC
70618191 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
70618226 CCTATATATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:70618591 original size:2 final size:2
Alignment explanation
Indices: 70618584--70618611 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
70618574 CCATTGCCGA
70618584 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
70618612 CATCAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:70622332 original size:48 final size:47
Alignment explanation
Indices: 70622259--70622467 Score: 138
Period size: 48 Copynumber: 4.6 Consensus size: 47
70622249 TAAAGTACCA
*
70622259 ATGCCATGTTCCCAACATGGCCTTACA-TGA-ATCCACATATCATCGTTG
1 ATGCCATG-TCCCAACATGGCCTTACACTGACA--CACATATCATCGTCG
* *
70622307 ATGCCATGTCCCAGACATGGTCTTACACTGACACACATATTATCGTCG
1 ATGCCATGTCCCA-ACATGGCCTTACACTGACACACATATCATCGTCG
* *
70622355 ATGCCATGT-----C-TGG----ACACT-AGCACACATATCACCGCCG
1 ATGCCATGTCCCAACATGGCCTTACACTGA-CACACATATCATCGTCG
* * * * **
70622392 ATGCTATGTCCCAGACATGGTCTTGCACTGGCACACATATCATCACCG
1 ATGCCATGTCCCA-ACATGGCCTTACACTGACACACATATCATCGTCG
* * *
70622440 ATGCCATGTTCTAGACATGGTCTTACAC
1 ATGCCATGTCCCA-ACATGGCCTTACAC
70622468 AGGCACATTT
Statistics
Matches: 130, Mismatches: 15, Indels: 32
0.73 0.08 0.18
Matches are distributed among these distances:
36 1 0.01
37 27 0.21
41 3 0.02
42 1 0.01
43 1 0.01
44 3 0.02
47 5 0.04
48 85 0.65
49 3 0.02
50 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (47 bp):
ATGCCATGTCCCAACATGGCCTTACACTGACACACATATCATCGTCG
Found at i:70622442 original size:85 final size:85
Alignment explanation
Indices: 70622292--70622448 Score: 233
Period size: 85 Copynumber: 1.8 Consensus size: 85
70622282 TACATGAATC
* ** * **
70622292 CACATATCATCGTTGATGCCATGTCCCAGACATGGTCTTACACTGACACACATATTATCGTCGAT
1 CACATATCACCGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACACATATCATCACCGAT
70622357 GCCATGTCTGGACACTAGCA
66 GCCATGTCTGGACACTAGCA
* * *
70622377 CACATATCACCGCCGATGCTATGTCCCAGACATGGTCTTGCACTGGCACACATATCATCACCGAT
1 CACATATCACCGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACACATATCATCACCGAT
70622442 GCCATGT
66 GCCATGT
70622449 TCTAGACATG
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 63 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (85 bp):
CACATATCACCGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACACATATCATCACCGAT
GCCATGTCTGGACACTAGCA
Found at i:70622473 original size:48 final size:48
Alignment explanation
Indices: 70622374--70622474 Score: 139
Period size: 48 Copynumber: 2.1 Consensus size: 48
70622364 CTGGACACTA
* * * *
70622374 GCACACATATCACCGCCGATGCTATGTCCCAGACATGGTCTTGCACTG
1 GCACACATATCACCACCGATGCCATGTCCCAGACATGGTCTTACACAG
* * *
70622422 GCACACATATCATCACCGATGCCATGTTCTAGACATGGTCTTACACAG
1 GCACACATATCACCACCGATGCCATGTCCCAGACATGGTCTTACACAG
70622470 GCACA
1 GCACA
70622475 TTTAGCACGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.23
Consensus pattern (48 bp):
GCACACATATCACCACCGATGCCATGTCCCAGACATGGTCTTACACAG
Found at i:70624942 original size:43 final size:43
Alignment explanation
Indices: 70624784--70624953 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 43
70624774 CATAAGCTCG
* * *
70624784 TACAATGCC-ATATCCCAGATATGGTCTTACAAGTTATCAC-A
1 TACAATGCCAATATCCCAGACATGGTCTTACATGTAATCACAA
** * * * * * * *
70624825 TATTGATGCCACT-GCCCTAGACAGGGTCTTAAAGGAAATCATAA
1 TA-CAATGCCAATATCCC-AGACATGGTCTTACATGTAATCACAA
*
70624869 TACGATGCCAATATCCCAGACATGGTCTTACATGTAATCACAA
1 TACAATGCCAATATCCCAGACATGGTCTTACATGTAATCACAA
* *
70624912 TACAATGCCAATGTCCCATACATGGTCTTACATGTAATCACA
1 TACAATGCCAATATCCCAGACATGGTCTTACATGTAATCACA
70624954 TCTCGATAAC
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 2 0.02
42 8 0.08
43 86 0.84
44 6 0.06
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
TACAATGCCAATATCCCAGACATGGTCTTACATGTAATCACAA
Found at i:70628740 original size:25 final size:26
Alignment explanation
Indices: 70628675--70628804 Score: 144
Period size: 26 Copynumber: 5.2 Consensus size: 26
70628665 GGCCTATCCT
*
70628675 CTTTT-AAT-AACTGGGACA-AAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
* * *
70628698 CTTTT-GATAAACTAGGGCA-AATCC
1 CTTTTCAATAAACTGGGGCATAAGCC
*
70628722 CTTTTCAATAAACTGGGGCATAAGGC
1 CTTTTCAATAAACTGGGGCATAAGCC
** * *
70628748 CTTTTCAATAAACCAGGGTAGAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
70628774 CTTTTCAATAAACTGGGGCATAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCC
70628800 CTTTT
1 CTTTT
70628805 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
23 7 0.08
24 17 0.20
25 12 0.14
26 51 0.59
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (26 bp):
CTTTTCAATAAACTGGGGCATAAGCC
Found at i:70628778 original size:52 final size:50
Alignment explanation
Indices: 70628675--70628804 Score: 167
Period size: 52 Copynumber: 2.6 Consensus size: 50
70628665 GGCCTATCCT
* * * *
70628675 CTTTT-AAT-AACTGGGACA-AAGCCCTTTTGATAAACTAGGGCAAATCC
1 CTTTTCAATAAACTGGGGCATAAGCCCTTTTAATAAACCAGGGCAAAGCC
* *
70628722 CTTTTCAATAAACTGGGGCATAAGGCCTTTTCAATAAACCAGGGTAGAAGCC
1 CTTTTCAATAAACTGGGGCATAAGCCCTTTT-AATAAACCAGGGCA-AAGCC
70628774 CTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 CTTTTCAATAAACTGGGGCATAAGCCCTTTT
70628805 GCACTTCCTC
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
47 5 0.07
48 3 0.04
49 9 0.13
50 9 0.13
51 11 0.15
52 34 0.48
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (50 bp):
CTTTTCAATAAACTGGGGCATAAGCCCTTTTAATAAACCAGGGCAAAGCC
Found at i:70628878 original size:20 final size:20
Alignment explanation
Indices: 70628853--70628939 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
70628843 TTATGAAAAC
*
70628853 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
70628873 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* * *
70628893 ATCATGAGCATTTTATACAT
1 ATCATGTGCATATCATACAT
70628913 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
70628933 ATCATGT
1 ATCATGT
70628940 ATACCATATC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
20 57 0.97
21 2 0.03
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:70628897 original size:40 final size:40
Alignment explanation
Indices: 70628853--70628939 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
70628843 TTATGAAAAC
70628853 ATCATGTGCATTTCATACATATCATGTGCATATCATA-CA
1 ATCATGTGCATTTCATACATATCATGTGCATATCATATCA
* *
70628892 TATCATGAGCATTTTATACATATCATGTGCATATCATATCA
1 -ATCATGTGCATTTCATACATATCATGTGCATATCATATCA
70628933 ATCATGT
1 ATCATGT
70628940 ATACCATATC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 41 0.95
41 2 0.05
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.38
Consensus pattern (40 bp):
ATCATGTGCATTTCATACATATCATGTGCATATCATATCA
Found at i:70636854 original size:23 final size:24
Alignment explanation
Indices: 70636817--70636951 Score: 137
Period size: 26 Copynumber: 5.4 Consensus size: 24
70636807 CTGGAGGCCT
*
70636817 AGCCTCTTTTAAT-AACTAGGGTAA
1 AGCC-CTTTTAATAAACTAGGGCAA
*
70636841 AGCCCTTTTGATAAACTAGGGCAA
1 AGCCCTTTTAATAAACTAGGGCAA
* *
70636865 ATCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTT-AATAAACTAGGGCA-A
* *
70636891 AGGCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTT-AATAAACTAGGGCA-A
*
70636917 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTT-AATAAACTAGGGCA-A
70636943 AGCCCTTTT
1 AGCCCTTTT
70636952 GCACTTCCTC
Statistics
Matches: 100, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 7 0.07
24 22 0.22
25 12 0.12
26 59 0.59
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTAGGGCAA
Found at i:70636904 original size:26 final size:26
Alignment explanation
Indices: 70636840--70636951 Score: 174
Period size: 26 Copynumber: 4.4 Consensus size: 26
70636830 AACTAGGGTA
* *
70636840 AAGCCCTTTT-GATAAACTAGGGCA-
1 AAGCCCTTTTCAATAAACTGGGGCAT
*
70636864 AATCCCTTTTCAATAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
*
70636890 AAGGCCTTTTCAATAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
70636916 AAGCCCTTTTCAATAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
70636942 AAGCCCTTTT
1 AAGCCCTTTT
70636952 GCACTTCCTC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
24 9 0.11
25 12 0.15
26 59 0.74
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (26 bp):
AAGCCCTTTTCAATAAACTGGGGCAT
Found at i:70637028 original size:20 final size:20
Alignment explanation
Indices: 70637000--70637076 Score: 118
Period size: 20 Copynumber: 3.9 Consensus size: 20
70636990 TTATGAAAAC
*
70637000 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
70637020 ATCAAGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
70637040 ATCATGTGCATTTTATACAT
1 ATCATGTGCATATCATACAT
70637060 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
70637077 TCAATCGTGT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:70637044 original size:40 final size:40
Alignment explanation
Indices: 70637000--70637076 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
70636990 TTATGAAAAC
70637000 ATCATGTGCATTTCATACATATCAAGTGCATATCATACAT
1 ATCATGTGCATTTCATACATATCAAGTGCATATCATACAT
* *
70637040 ATCATGTGCATTTTATACATATCATGTGCATATCATA
1 ATCATGTGCATTTCATACATATCAAGTGCATATCATA
70637077 TCAATCGTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (40 bp):
ATCATGTGCATTTCATACATATCAAGTGCATATCATACAT
Found at i:70644476 original size:40 final size:40
Alignment explanation
Indices: 70644421--70644497 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
70644411 AAAGTGTAAT
70644421 GTTTCGGTAATGCCTCGAGCCCTGTTCTGGTGTTGGAAAA
1 GTTTCGGTAATGCCTCGAGCCCTGTTCTGGTGTTGGAAAA
*
70644461 GTTTCGGTAATGCCTCTAGCCCTGTTCTGGTGTTGGA
1 GTTTCGGTAATGCCTCGAGCCCTGTTCTGGTGTTGGA
70644498 TACGGGTGAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.14, C:0.21, G:0.30, T:0.35
Consensus pattern (40 bp):
GTTTCGGTAATGCCTCGAGCCCTGTTCTGGTGTTGGAAAA
Found at i:70650698 original size:39 final size:40
Alignment explanation
Indices: 70650647--70650754 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 40
70650637 TGGAAATTAT
* * *
70650647 ATCCGGGTTAAGACCCG-AGGCAATT-GTGCTAGTGGCTAC
1 ATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCG-TAC
**
70650686 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCGTTT
1 ATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCGTAC
70650725 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTCGTGC
70650755 ACGTGGTTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
39 50 0.81
40 12 0.19
ACGTcount: A:0.22, C:0.26, G:0.31, T:0.21
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCGTAC
Found at i:70658632 original size:40 final size:41
Alignment explanation
Indices: 70658587--70658697 Score: 142
Period size: 40 Copynumber: 2.8 Consensus size: 41
70658577 CTGGAAATTA
* *
70658587 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGT--CATAC
*
70658628 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATTC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATAC
70658667 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTCGTGC
70658698 ACGTGTTATA
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
38 1 0.02
39 5 0.08
40 58 0.91
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTCGTGCGAGTCATAC
Found at i:70659243 original size:28 final size:28
Alignment explanation
Indices: 70659178--70659278 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
70659168 ATAGTGAATC
*
70659178 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
70659207 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70659235 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
70659265 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70659279 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70667149 original size:28 final size:28
Alignment explanation
Indices: 70667084--70667184 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
70667074 ATAGTGAATC
*
70667084 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
70667113 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70667141 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
70667171 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70667185 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70670339 original size:28 final size:27
Alignment explanation
Indices: 70670276--70670345 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
70670266 ATAGTGAGTC
70670276 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
70670303 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
70670331 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70670346 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:70672427 original size:33 final size:33
Alignment explanation
Indices: 70672345--70672421 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
70672335 TGATTGCATT
* *
70672345 ACTGATACTGTTACTGTATTGGGCTAAGGCCAC
1 ACTGATACTGATACTGTAATGGGCTAAGGCCAC
* *
70672378 ACTGACACTGATACTGTAATGGGCTATGGCCTTA-
1 ACTGATACTGATACTGTAATGGGCTAAGGCC--AC
70672412 ACTGATACTG
1 ACTGATACTG
70672422 GACTGTCACT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
33 27 0.73
34 9 0.24
35 1 0.03
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (33 bp):
ACTGATACTGATACTGTAATGGGCTAAGGCCAC
Found at i:70681350 original size:39 final size:39
Alignment explanation
Indices: 70681266--70681418 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
70681256 TATGGTAACC
** * *
70681266 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
70681306 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
70681345 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
70681384 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
70681419 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:70681391 original size:78 final size:79
Alignment explanation
Indices: 70681235--70681417 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
70681225 TCGTTCAAAC
* * **
70681235 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
70681300 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
70681315 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
70681379 CAATTTGCACAATT
66 CAATTTGCACAATT
70681393 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
70681418 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:70689421 original size:39 final size:39
Alignment explanation
Indices: 70689337--70689489 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
70689327 TATGGTAACC
** * *
70689337 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
70689377 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
70689416 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
70689455 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
70689490 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:70689462 original size:78 final size:79
Alignment explanation
Indices: 70689306--70689488 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
70689296 TCGTTCAAAC
* * **
70689306 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
70689371 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
70689386 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
70689450 CAATTTGCACAATT
66 CAATTTGCACAATT
70689464 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
70689489 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:70691264 original size:47 final size:45
Alignment explanation
Indices: 70691200--70691417 Score: 246
Period size: 46 Copynumber: 4.7 Consensus size: 45
70691190 TATAAGAGCC
70691200 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGGGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGACAA--GCT
*
70691248 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTTGAGAC--AAGCT
* *
70691294 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGAAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGA-CAAGCT
* * * *
70691339 AGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGATATGACCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGACA--AGCT
*
70691386 AGTGCAAGACCATGTCTGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
70691418 TACCTTACCC
Statistics
Matches: 149, Mismatches: 12, Indels: 19
0.83 0.07 0.11
Matches are distributed among these distances:
45 16 0.11
46 68 0.46
47 54 0.36
48 11 0.07
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGACAAGCT
Found at i:70704848 original size:46 final size:46
Alignment explanation
Indices: 70704789--70704964 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
70704779 TGGGTTGTTG
* *
70704789 ATAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGAC
1 ATAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGAC
* *
70704834 ATAAGCCAGTGTAAGACC-TGTCTGGGACAT-GCATCGGCTACGAGATG
1 AT-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGA-C
* * * *
70704881 ATAGTCAGTGTAAGACCATGTCTTGGACATGGCATCGACTTGAGAT
1 ATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGAC
* *
70704927 ATGAGCTAGCGTAAGACCATGTCTGGGACATGGCATCG
1 AT-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
70704965 GCACCTTACC
Statistics
Matches: 112, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
45 5 0.04
46 50 0.45
47 49 0.44
48 8 0.07
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
ATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGAC
Found at i:70704926 original size:47 final size:47
Alignment explanation
Indices: 70704787--70704964 Score: 190
Period size: 47 Copynumber: 3.8 Consensus size: 47
70704777 TATGGGTTGT
*
70704787 TGAT-AGCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCTCGAGA
1 TGATAAGCTAGTGTAAGACCATGTCTGGGACATGCATC-GACTCGAGA
* * *
70704833 -CATAAGCCAGTGTAAGACC-TGTCTGGGACATGCATCGGCTACGAGA
1 TGATAAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACT-CGAGA
* *
70704879 TGAT-AG-TCAGTGTAAGACCATGTCTTGGACATGGCATCGACTTGAGA
1 TGATAAGCT-AGTGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGA
* *
70704926 T-ATGAGCTAGCGTAAGACCATGTCTGGGACATGGCATCG
1 TGATAAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCG
70704965 GCACCTTACC
Statistics
Matches: 113, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
45 5 0.04
46 49 0.43
47 50 0.44
48 9 0.08
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
TGATAAGCTAGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGA
Found at i:70712203 original size:40 final size:40
Alignment explanation
Indices: 70712124--70712281 Score: 160
Period size: 40 Copynumber: 4.0 Consensus size: 40
70712114 TTCGAATGAT
* * * *
70712124 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* * *
70712164 ATCCGGACTAAGATCCGATGGCATACGTGTGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * *
70712204 ATCCGGACTAAGATCCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
**
70712244 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
70712282 GTAACCGGGC
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 91 0.94
41 5 0.05
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:70712290 original size:40 final size:40
Alignment explanation
Indices: 70712124--70712308 Score: 146
Period size: 40 Copynumber: 4.6 Consensus size: 40
70712114 TTCGAATGAT
* * *
70712124 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGAGC-GAGCT-ACTAA
* * * * * *
70712164 ATCCGGACTAAGAT-CCGATGGCATACGTGTGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGAGCGAGCTACTAA
* *
70712204 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCGAGCTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTCGAGCGAGCTACTAA
* * * *
70712244 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTGTA
1 ATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACT-AA
*
70712285 A-CCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATT
70712309 TGAATGTGTA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 111 0.93
41 8 0.07
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGCTACTAA
Found at i:70712302 original size:80 final size:80
Alignment explanation
Indices: 70712124--70712311 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 80
70712114 TTCGAATGAT
* *
70712124 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGATGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
*
70712189 CGTGTGAGTTACTAA
66 CGTGCGAGTTACTAA
* * **
70712204 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-GAGCT-ACTAAATCCGGGTTAAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
70712265 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
70712285 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
70712312 ATGTGTAGCC
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 2 0.02
80 78 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:70717269 original size:20 final size:20
Alignment explanation
Indices: 70717244--70717288 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
70717234 AGGGACTAAA
* *
70717244 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
70717264 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
70717284 ATGAA
1 ATGAA
70717289 TACATGTGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:70719535 original size:16 final size:18
Alignment explanation
Indices: 70719503--70719535 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
70719493 ATGAGATTAA
70719503 AATGTGATATATGATTCT
1 AATGTGATATATGATTCT
70719521 AATGT-ATAT-TGATTC
1 AATGTGATATATGATTC
70719536 AGTGTTACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.33, C:0.06, G:0.15, T:0.45
Consensus pattern (18 bp):
AATGTGATATATGATTCT
Done.