Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 232 of 425
Found at i:70719695 original size:49 final size:49
Alignment explanation
Indices: 70719588--70719781 Score: 151
Period size: 49 Copynumber: 4.0 Consensus size: 49
70719578 AGCTTAGGTT
* * *
70719588 GAAAACCATCATTGTCGGGCCATCCAGGATGGTAAAATATTCAAATAAT
1 GAAAACCATCATTGTCGGGCCATCCAAGATGGTAAAATATTAAAATAAG
**
70719637 GAATGCCATCATTGTCGAGG-CATCCAAGATGGTAAAATA-TAAGAATAAG
1 GAAAACCATCATTGTCG-GGCCATCCAAGATGGTAAAATATTAA-AATAAG
* * * ** ** *
70719686 GAAAACCATCTTTTTCGGGTCATCCGGGATGGTAGTATATTGAAAT-AG
1 GAAAACCATCATTGTCGGGCCATCCAAGATGGTAAAATATTAAAATAAG
* * * * * * * *
70719734 TATAAACAACCGTTGTCGGGCCATCCGAGATTGTAAAATGTTGAAATA
1 GA-AAACCATCATTGTCGGGCCATCCAAGATGGTAAAATATTAAAATA
70719782 GTGTAAACTA
Statistics
Matches: 114, Mismatches: 25, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
48 7 0.06
49 103 0.90
50 4 0.04
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (49 bp):
GAAAACCATCATTGTCGGGCCATCCAAGATGGTAAAATATTAAAATAAG
Found at i:70719782 original size:49 final size:49
Alignment explanation
Indices: 70719725--70719831 Score: 135
Period size: 49 Copynumber: 2.2 Consensus size: 49
70719715 TGGTAGTATA
* * *
70719725 TTGAAATAGTATAAACAACCGTTGTCGGGCCATCCGAGATTGTAAAATG
1 TTGAAATAGTATAAACAACCGTTGTCGAGCCATCCAAGATGGTAAAATG
* * * * *
70719774 TTGAAATAGTGTAAACTACTGTTGTTGAGCCATCCAAGATGGTAAACTG
1 TTGAAATAGTATAAACAACCGTTGTCGAGCCATCCAAGATGGTAAAATG
70719823 TTG-AATAGT
1 TTGAAATAGT
70719832 GTGAGCCATT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
48 6 0.12
49 44 0.88
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (49 bp):
TTGAAATAGTATAAACAACCGTTGTCGAGCCATCCAAGATGGTAAAATG
Found at i:70721818 original size:41 final size:40
Alignment explanation
Indices: 70721742--70721827 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 40
70721732 CAAATACATT
*
70721742 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATGATAC
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAAT-ATAA
* * * * **
70721783 TAAAACAATTCTTAAAACAATACACAAATTGAAAATATAA
1 TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
70721823 TAAAA
1 TAAAA
70721828 AATGATTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
40 8 0.21
41 30 0.79
ACGTcount: A:0.65, C:0.10, G:0.03, T:0.21
Consensus pattern (40 bp):
TAAAACAAATATTAAAACAAGAAACAAATAAAAAATATAA
Found at i:70721913 original size:10 final size:10
Alignment explanation
Indices: 70721898--70721929 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
70721888 AGTATATAAT
70721898 TCGGGCTGGG
1 TCGGGCTGGG
*
70721908 TCGGGCCGGG
1 TCGGGCTGGG
70721918 TCGGGCTGGG
1 TCGGGCTGGG
70721928 TC
1 TC
70721930 CAAGCCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.25, G:0.56, T:0.19
Consensus pattern (10 bp):
TCGGGCTGGG
Found at i:70725955 original size:40 final size:39
Alignment explanation
Indices: 70725906--70726113 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 39
70725896 TCTTCGGAAT
* * *
70725906 TTAG-CCGGATATAACCACAAGCGCAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
70725945 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
70725985 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGCTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
70726025 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* *
70726065 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
70726105 TTAGCCCGG
1 TTAGCCCGG
70726114 GTATCATTCA
Statistics
Matches: 144, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.02
40 138 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:70726033 original size:80 final size:80
Alignment explanation
Indices: 70725906--70726113 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 80
70725896 TCTTCGGAAT
* * * * * * *** *
70725906 TTAG-CCGGATATAACCACAAGCGCAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTTGCAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
70725970 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * *
70725985 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGCTCTTAGCCCGGATATAACAACTCGCA
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCA
*
70726049 CGAATGCCTTCGGGTC
65 CAAATGCCTTCGGGTC
* *
70726065 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
70726114 GTATCATTCA
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 5 0.05
80 102 0.94
81 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
AAATGCCTTCGGGTC
Found at i:70733526 original size:6 final size:6
Alignment explanation
Indices: 70733515--70733543 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
70733505 CCACATAAGC
70733515 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
70733544 GGCTTCCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:70735839 original size:11 final size:11
Alignment explanation
Indices: 70735823--70735847 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
70735813 GTATAAAAAA
70735823 ATTATTATTAT
1 ATTATTATTAT
70735834 ATTATTATTAT
1 ATTATTATTAT
70735845 ATT
1 ATT
70735848 TTTAAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTATTATTAT
Found at i:70736219 original size:14 final size:13
Alignment explanation
Indices: 70736193--70736218 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70736183 AAGAGGAGTT
70736193 TTTTTAAATAAAA
1 TTTTTAAATAAAA
70736206 TTTTTAAATAAAA
1 TTTTTAAATAAAA
70736219 AAAATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TTTTTAAATAAAA
Found at i:70739565 original size:93 final size:93
Alignment explanation
Indices: 70739453--70739624 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
70739443 GCCCATAAGT
* *
70739453 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70739518 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
70739546 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70739611 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
70739625 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70739620 original size:46 final size:46
Alignment explanation
Indices: 70739445--70739620 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
70739435 TGTAACCCGC
* * *
70739445 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
70739491 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
70739541 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
70739584 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70739621 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:70742044 original size:30 final size:30
Alignment explanation
Indices: 70742000--70742088 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
70741990 CAAAGATAAC
70742000 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
70742029 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
70742059 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
70742089 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:70742048 original size:15 final size:15
Alignment explanation
Indices: 70742000--70742079 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
70741990 CAAAGATAAC
*
70742000 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
70742014 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
70742029 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
70742044 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
70742059 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
70742074 AAGAAA
1 AAGAAA
70742080 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:70742088 original size:15 final size:15
Alignment explanation
Indices: 70742011--70742088 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
70742001 AGAAAACCGA
70742011 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
70742026 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
70742040 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
70742055 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
70742071 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
70742086 ATA
1 ATA
70742089 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:70745152 original size:93 final size:93
Alignment explanation
Indices: 70745040--70745211 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
70745030 GCCCATAAGT
* *
70745040 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70745105 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
70745133 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70745198 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
70745212 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:70745207 original size:46 final size:46
Alignment explanation
Indices: 70745032--70745207 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
70745022 TGTAACCCGC
* * *
70745032 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
70745078 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
70745128 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
70745171 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70745208 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:70746995 original size:16 final size:16
Alignment explanation
Indices: 70746974--70747004 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
70746964 AGATACAATT
70746974 TTTATTTTTATTTTTC
1 TTTATTTTTATTTTTC
70746990 TTTATTTTTATTTTT
1 TTTATTTTTATTTTT
70747005 TGTCAGGTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTATTTTTATTTTTC
Found at i:70747559 original size:25 final size:25
Alignment explanation
Indices: 70747521--70747590 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
70747511 CAGACCCATT
*
70747521 TCATAGCTCGTGTGAGCATTTACAA
1 TCATAACTCGTGTGAGCATTTACAA
* * *
70747546 TCATAACTCCTGTGAGCGTTTACCA
1 TCATAACTCGTGTGAGCATTTACAA
* *
70747571 TCACAACTTGTGTGAGCATT
1 TCATAACTCGTGTGAGCATT
70747591 GTTCTTGCGT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (25 bp):
TCATAACTCGTGTGAGCATTTACAA
Found at i:70747661 original size:13 final size:13
Alignment explanation
Indices: 70747645--70747678 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
70747635 AAAATGAATT
70747645 TATGAAATGGTTA
1 TATGAAATGGTTA
*
70747658 TATGGAATGGTTA
1 TATGAAATGGTTA
70747671 TATGAAAT
1 TATGAAAT
70747679 AAATATTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (13 bp):
TATGAAATGGTTA
Found at i:70749976 original size:21 final size:21
Alignment explanation
Indices: 70749951--70749991 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70749941 TAGTGTATTT
*
70749951 ATCCATGACC-TATGTAAATTC
1 ATCCAT-ACCTTAAGTAAATTC
70749972 ATCCATACCTTAAGTAAATT
1 ATCCATACCTTAAGTAAATT
70749992 TCTCACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.34
Consensus pattern (21 bp):
ATCCATACCTTAAGTAAATTC
Found at i:70752122 original size:40 final size:39
Alignment explanation
Indices: 70752057--70752260 Score: 221
Period size: 40 Copynumber: 5.1 Consensus size: 39
70752047 CAGAATACAA
*
70752057 CCGGATATAATCAC-ACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-CACTA-GCACAAATGCCTTCGGGTCTTAGC
* *
70752097 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* *
70752137 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAAC-ACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
70752177 CCGGATGTAGTCACTAGCACAATTGCCTTCGGATCTTAAC
1 CCGGATATA-ACACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
70752217 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAA-CACTAGCACAAATGCCTTCGGGTCTTAGC
70752257 CCGG
1 CCGG
70752261 GTATCATTCA
Statistics
Matches: 138, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 136 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAACACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70753905 original size:40 final size:40
Alignment explanation
Indices: 70753851--70754160 Score: 422
Period size: 40 Copynumber: 7.8 Consensus size: 40
70753841 ATCACATGTG
* * * * * *
70753851 CAATCCGGGGCACTGAAGTGCAAAAAGGGCTATCAAAGTT
1 CAATCAGGGGCACTGATGTGCAAAAAGGGGTACCGAAGTA
* * * *
70753891 CAAACAGGGGCACTGATGTGCAAATAGGGGTACCAAAATA
1 CAATCAGGGGCACTGATGTGCAAAAAGGGGTACCGAAGTA
70753931 CAATCAGGGGCACTGATGTGCAAAAAGGGGTACCGAAGTA
1 CAATCAGGGGCACTGATGTGCAAAAAGGGGTACCGAAGTA
* * *
70753971 CAAACAGGGGCACTGATATGCAAACAGGGGTACCGAAGTA
1 CAATCAGGGGCACTGATGTGCAAAAAGGGGTACCGAAGTA
* *
70754011 CAATCAGGGGCACTGATGTGCAAACAGGGGTATCGAAGTA
1 CAATCAGGGGCACTGATGTGCAAAAAGGGGTACCGAAGTA
* * *
70754051 TAATCAGGGGCACTGATGTGCAAAAAAGGGCACCGAAGTA
1 CAATCAGGGGCACTGATGTGCAAAAAGGGGTACCGAAGTA
*
70754091 CAATCAGGGGCACTGATGTGCAAATAGGGGTACCGAAGTA
1 CAATCAGGGGCACTGATGTGCAAAAAGGGGTACCGAAGTA
* * *
70754131 CAAACAAGGGCACTGATGTGCAAATAGGGG
1 CAATCAGGGGCACTGATGTGCAAAAAGGGG
70754161 CACTTATTCA
Statistics
Matches: 241, Mismatches: 29, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 241 1.00
ACGTcount: A:0.36, C:0.18, G:0.31, T:0.15
Consensus pattern (40 bp):
CAATCAGGGGCACTGATGTGCAAAAAGGGGTACCGAAGTA
Found at i:70760366 original size:77 final size:80
Alignment explanation
Indices: 70760233--70760414 Score: 221
Period size: 77 Copynumber: 2.3 Consensus size: 80
70760223 CGAATGATGT
* *
70760233 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGACTAAG-CCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
70760297 GTGCGAGTTACTA-AT
65 GTGCGAGTTACTATAA
* * **
70760312 CCGGACTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CCGGACTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTT
70760374 GTGCGAGTTACTATAA
65 GTGCGAGTTACTATAA
* *
70760390 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGACTAAG-CCCGAAGGCATTTG
70760415 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
76 1 0.01
77 50 0.56
78 16 0.18
79 9 0.10
80 13 0.15
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGACTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:70760428 original size:40 final size:40
Alignment explanation
Indices: 70760233--70760414 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
70760223 CGAATGATGT
* * *
70760233 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
70760273 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70760312 CCGGACTAAG--CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70760349 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
70760390 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70760415 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 8, Indels: 12
0.86 0.05 0.08
Matches are distributed among these distances:
37 26 0.20
38 8 0.06
39 12 0.09
40 72 0.56
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:70767809 original size:29 final size:29
Alignment explanation
Indices: 70767747--70767849 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
70767737 GTGACGAGAT
* * *
70767747 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
70767776 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
70767805 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
70767834 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70767850 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:70770518 original size:49 final size:49
Alignment explanation
Indices: 70770451--70770704 Score: 453
Period size: 49 Copynumber: 5.3 Consensus size: 49
70770441 TACATGATAG
70770451 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
70770500 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
70770549 TATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
70770598 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
70770645 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
70770694 -A-ATGTGATAAG
1 TATATGTGATAAG
70770705 TCCCGAAGGG
Statistics
Matches: 199, Mismatches: 4, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
47 55 0.28
48 1 0.01
49 143 0.72
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:70775428 original size:40 final size:39
Alignment explanation
Indices: 70775371--70775553 Score: 239
Period size: 40 Copynumber: 4.7 Consensus size: 39
70775361 TCGAATGATG
* *
70775371 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
70775411 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
70775450 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
70775488 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
70775528 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70775554 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
37 24 0.19
38 12 0.09
39 12 0.09
40 73 0.57
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:70775505 original size:77 final size:80
Alignment explanation
Indices: 70775371--70775553 Score: 241
Period size: 77 Copynumber: 2.3 Consensus size: 80
70775361 TCGAATGATG
*
70775371 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
70775435 TGTGCGAGTTACTA-A
65 TGTGCGAGTTACTATA
* * **
70775450 TCCGGGCTAAG-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
70775512 TGTGCGAGTTACTATA
65 TGTGCGAGTTACTATA
* *
70775528 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
70775554 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 7, Indels: 9
0.85 0.06 0.08
Matches are distributed among these distances:
76 1 0.01
77 50 0.54
78 17 0.18
79 11 0.12
80 13 0.14
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTATA
Found at i:70781060 original size:34 final size:34
Alignment explanation
Indices: 70781017--70781085 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
70781007 CATTTTGGTG
*
70781017 TATGTTTTGGTAATGTTTAGGTTCCCTTGAAGTA
1 TATGTTTTGGCAATGTTTAGGTTCCCTTGAAGTA
70781051 TATGTTTTGGCAATGTTTAGGTTCCCTTGAAGTA
1 TATGTTTTGGCAATGTTTAGGTTCCCTTGAAGTA
70781085 T
1 T
70781086 GTTTAAATGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.20, C:0.10, G:0.23, T:0.46
Consensus pattern (34 bp):
TATGTTTTGGCAATGTTTAGGTTCCCTTGAAGTA
Found at i:70781452 original size:21 final size:21
Alignment explanation
Indices: 70781404--70781452 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
70781394 CTATGTGACC
* *
70781404 CTTGTTTCCTAATTTTTGTAA
1 CTTGTTTCCTAACTTTTGCAA
70781425 CTT-TTTCCTAAACTTTT-CAA
1 CTTGTTTCCT-AACTTTTGCAA
70781445 CTTGTTTC
1 CTTGTTTC
70781453 AAATTGGTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.18, C:0.20, G:0.06, T:0.55
Consensus pattern (21 bp):
CTTGTTTCCTAACTTTTGCAA
Found at i:70782725 original size:21 final size:21
Alignment explanation
Indices: 70782686--70782726 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
70782676 TAGAAATAAT
* **
70782686 AATGATCTTAATGGTAATCCA
1 AATGATCATAATGAAAATCCA
70782707 AATGATCATAATGAAAATCC
1 AATGATCATAATGAAAATCC
70782727 TCCAATTGGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.15, G:0.12, T:0.29
Consensus pattern (21 bp):
AATGATCATAATGAAAATCCA
Found at i:70788410 original size:27 final size:27
Alignment explanation
Indices: 70788380--70788750 Score: 494
Period size: 27 Copynumber: 13.8 Consensus size: 27
70788370 GCGTACCTGA
*
70788380 ACCCTGATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
70788407 ACCCTCATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
*
70788434 ACCCTCATATGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
70788461 ACCCTCATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* * *
70788488 ACCCTTATGTGATAAAATAATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
*
70788515 ACCCTCATGAGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* *
70788542 ACCCTTATGTGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
**
70788569 -CCCTACATGTGATAAAATTTCGATTTT
1 ACCCT-CATGTGATAAAATGACGATTTT
* *
70788596 ACCCTC-TATGATAAAATGACAATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* *
70788622 ACCCTTATGTGATAAAATAACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
*
70788649 ACCCTCATGTGATAAAATGATGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* *
70788676 ACCATTATGTGATAAAATGACGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
** * * *
70788703 GTCCTTATGTGGTAAAATGAAGATTTT
1 ACCCTCATGTGATAAAATGACGATTTT
* * *
70788730 TCCCTTATGTGGTAAAATGAC
1 ACCCTCATGTGATAAAATGAC
70788751 CGAAATACCC
Statistics
Matches: 302, Mismatches: 39, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 25 0.08
27 273 0.90
28 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.36
Consensus pattern (27 bp):
ACCCTCATGTGATAAAATGACGATTTT
Found at i:70788809 original size:54 final size:54
Alignment explanation
Indices: 70788740--70788858 Score: 159
Period size: 54 Copynumber: 2.2 Consensus size: 54
70788730 TCCCTTATGT
70788740 GGTAAAATGACCGAAATA-CCCTCATAGGGTAAAATGACCGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCT-ATAGGGTAAAATGACCGAAATACCCCCATAA
* * * * * **
70788794 GGTATAATGTCCGAAATACCCCTGTAGGGTAAAATGACTGTAATACCCCGGTAA
1 GGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAA
70788848 GGTAAAATGAC
1 GGTAAAATGAC
70788859 AGATTTGTTC
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 51 0.93
55 4 0.07
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (54 bp):
GGTAAAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCCATAA
Found at i:70788842 original size:27 final size:27
Alignment explanation
Indices: 70788740--70788858 Score: 132
Period size: 27 Copynumber: 4.4 Consensus size: 27
70788730 TCCCTTATGT
*
70788740 GGTAAAATGACCGAAATA-CCCTCATAG
1 GGTAAAATGACCGAAATACCCCT-ATAA
*
70788767 GGTAAAATGACCGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCTATAA
* * * *
70788794 GGTATAATGTCCGAAATACCCCTGTAG
1 GGTAAAATGACCGAAATACCCCTATAA
* * **
70788821 GGTAAAATGACTGTAATACCCCGGTAA
1 GGTAAAATGACCGAAATACCCCTATAA
70788848 GGTAAAATGAC
1 GGTAAAATGAC
70788859 AGATTTGTTC
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
27 75 0.96
28 3 0.04
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAA
Found at i:70788936 original size:23 final size:23
Alignment explanation
Indices: 70788893--70788942 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
70788883 CTGTATTTGA
70788893 GCATACCATGTTATATGTATGTT
1 GCATACCATGTTATATGTATGTT
70788916 GCAT-CCATGTATAATAT-TATGTT
1 GCATACCATGT-T-ATATGTATGTT
70788939 GCAT
1 GCAT
70788943 TACATGGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (23 bp):
GCATACCATGTTATATGTATGTT
Found at i:70789248 original size:18 final size:18
Alignment explanation
Indices: 70789190--70789248 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
70789180 TCTGCTTGCA
70789190 TACTGCACTGATTACTAT
1 TACTGCACTGATTACTAT
* * * **
70789208 TACTACAATGATCACGGT
1 TACTGCACTGATTACTAT
*
70789226 TACTGGACTGATTACTAT
1 TACTGCACTGATTACTAT
70789244 TACTG
1 TACTG
70789249 AAAAGGGCTA
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (18 bp):
TACTGCACTGATTACTAT
Found at i:70789343 original size:34 final size:34
Alignment explanation
Indices: 70789238--70789351 Score: 140
Period size: 34 Copynumber: 3.4 Consensus size: 34
70789228 CTGGACTGAT
*
70789238 TACTATTACTGAAAA-GGGCTAAAGCCCAGACTGC
1 TACTGTTACT-AAAATGGGCTAAAGCCCAGACTGC
** * *
70789272 TACAATTACTGAAATGGACTAAAGCCCAGACTGC
1 TACTGTTACTAAAATGGGCTAAAGCCCAGACTGC
* * *
70789306 TACTGTCACTAAAATGGGCTAAGGCCCAGACTAC
1 TACTGTTACTAAAATGGGCTAAAGCCCAGACTGC
70789340 TACTGTTACTAA
1 TACTGTTACTAA
70789352 TACGGGCTTA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
33 3 0.04
34 65 0.96
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (34 bp):
TACTGTTACTAAAATGGGCTAAAGCCCAGACTGC
Found at i:70789369 original size:34 final size:34
Alignment explanation
Indices: 70789249--70789369 Score: 100
Period size: 34 Copynumber: 3.6 Consensus size: 34
70789239 ACTATTACTG
* * ** *
70789249 AAAA-GGGCTAAAGCCCAGACTGCTACAATTACT
1 AAAACGGGCTAAGGCCCAGACTACTACTGTCACT
* * * * *
70789282 GAAATGGACTAAAGCCCAGACTGCTACTGTCACT
1 AAAACGGGCTAAGGCCCAGACTACTACTGTCACT
* *
70789316 AAAATGGGCTAAGGCCCAGACTACTACTGTTACT
1 AAAACGGGCTAAGGCCCAGACTACTACTGTCACT
* * *
70789350 AATACGGGCTTAGGTCCAGA
1 AAAACGGGCTAAGGCCCAGA
70789370 ATGTATTTGC
Statistics
Matches: 73, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
33 3 0.04
34 70 0.96
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.21
Consensus pattern (34 bp):
AAAACGGGCTAAGGCCCAGACTACTACTGTCACT
Found at i:70792301 original size:27 final size:27
Alignment explanation
Indices: 70792269--70792473 Score: 268
Period size: 27 Copynumber: 7.6 Consensus size: 27
70792259 ACCTGAACCT
*
70792269 TCATGTGATAAAATGAAGATTTTACCC
1 TCATGTGATAAAATGACGATTTTACCC
70792296 TCATGTGATAAAATGACGATTTTACCC
1 TCATGTGATAAAATGACGATTTTACCC
*
70792323 TC-TGTGATAAAATGTCGATTTTACCC
1 TCATGTGATAAAATGACGATTTTACCC
* *
70792349 TTATGTGATAAAATGACGATTTTGCCC
1 TCATGTGATAAAATGACGATTTTACCC
* *
70792376 TCATGTGATAAATTGACAATTTTACCC
1 TCATGTGATAAAATGACGATTTTACCC
* * *
70792403 TTATGTTATAAAATGACGATTTTGCCC
1 TCATGTGATAAAATGACGATTTTACCC
** * *
70792430 TTGTGTGATAAAATGATGATTTTGCCC
1 TCATGTGATAAAATGACGATTTTACCC
* *
70792457 TTATATGATAAAATGAC
1 TCATGTGATAAAATGAC
70792474 CAAAATACCC
Statistics
Matches: 157, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 24 0.15
27 133 0.85
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (27 bp):
TCATGTGATAAAATGACGATTTTACCC
Found at i:70792496 original size:81 final size:81
Alignment explanation
Indices: 70792266--70792500 Score: 278
Period size: 81 Copynumber: 2.9 Consensus size: 81
70792256 CGTACCTGAA
* * *
70792266 CCTTCATGTGATAAAATGAAGATTTTACCCTCATGTGATAAAATGACGATTTTACCCTC-TGTGA
1 CCTT-ATGTGATAAAATGAAGATTTTGCCCTCATGTGATAAAATGACCAATTTACCCTCATGTGA
*
70792330 TAAAATGTCGATTTTAC
65 TAAAATGACGATTTTAC
* * * *
70792347 CCTTATGTGATAAAATGACGATTTTGCCCTCATGTGATAAATTGA-CAATTTTACCCTTATGTTA
1 CCTTATGTGATAAAATGAAGATTTTGCCCTCATGTGATAAAATGACCAA-TTTACCCTCATGTGA
*
70792411 TAAAATGACGATTTTGC
65 TAAAATGACGATTTTAC
* * * * ** *
70792428 CCTTGTGTGATAAAATGATGATTTTGCCCTTATATGATAAAATGACCAAAATACCCTCATAG-GG
1 CCTTATGTGATAAAATGAAGATTTTGCCCTCATGTGATAAAATGACCAATTTACCCTCAT-GTGA
70792492 TAAAATGAC
65 TAAAATGAC
70792501 CGAAATACCC
Statistics
Matches: 131, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
79 1 0.01
80 46 0.35
81 80 0.61
82 4 0.03
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (81 bp):
CCTTATGTGATAAAATGAAGATTTTGCCCTCATGTGATAAAATGACCAATTTACCCTCATGTGAT
AAAATGACGATTTTAC
Found at i:70792565 original size:27 final size:27
Alignment explanation
Indices: 70792465--70792579 Score: 142
Period size: 27 Copynumber: 4.3 Consensus size: 27
70792455 CCTTATATGA
*
70792465 TAAAATGACCAAAATACCCTCA-TAGGG
1 TAAAATGACCGAAATACCC-CAGTAGGG
*
70792492 TAAAATGACCGAAATACCCCAATAGGG
1 TAAAATGACCGAAATACCCCAGTAGGG
* *
70792519 TAGAATGACCGAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCAGTAGGG
* * * *
70792546 TAAAATGACTGTAATACCCCGGTAAGG
1 TAAAATGACCGAAATACCCCAGTAGGG
70792573 TAAAATG
1 TAAAATG
70792580 GCAGATTTGT
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.03
27 76 0.97
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCAGTAGGG
Found at i:70792950 original size:18 final size:18
Alignment explanation
Indices: 70792924--70792977 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
70792914 TTGCATATTA
70792924 CACTGATTACTGTTACTG
1 CACTGATTACTGTTACTG
*
70792942 CATTGATTA-TAGTTACTG
1 CACTGATTACT-GTTACTG
*
70792960 CACTGATTACTATTACTG
1 CACTGATTACTGTTACTG
70792978 AAAAGGGCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 1 0.03
18 29 0.94
19 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.41
Consensus pattern (18 bp):
CACTGATTACTGTTACTG
Found at i:70793006 original size:34 final size:34
Alignment explanation
Indices: 70792967--70793088 Score: 172
Period size: 34 Copynumber: 3.6 Consensus size: 34
70792957 CTGCACTGAT
* * *
70792967 TACTATTACTGAAAAGGGCTAAAGCCTAGGCTGC
1 TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
*
70793001 TACTATTACTGAAATGGGCTAAAGCCCAGACTGT
1 TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
* *
70793035 TACTGTTACTGAAATGGGCTAAGGCCCAGACTGC
1 TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
* *
70793069 TACTGTTACTGATATGGGCT
1 TACTATTACTGAAATGGGCT
70793089 TAGGCCTAGA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 80 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (34 bp):
TACTATTACTGAAATGGGCTAAAGCCCAGACTGC
Found at i:70795202 original size:32 final size:29
Alignment explanation
Indices: 70795162--70795220 Score: 73
Period size: 32 Copynumber: 1.9 Consensus size: 29
70795152 TACTTTCCTC
*
70795162 AAAAATCAAAGCTTTATTTTGAAATAATTGA
1 AAAAATCAAAACTTTATTTT-AAA-AATTGA
*
70795193 AAAAGATCAAAACTTTGTTTTAAAAATT
1 AAAA-ATCAAAACTTTATTTTAAAAATT
70795221 TAAACTTTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 4 0.16
31 7 0.28
32 14 0.56
ACGTcount: A:0.49, C:0.07, G:0.08, T:0.36
Consensus pattern (29 bp):
AAAAATCAAAACTTTATTTTAAAAATTGA
Found at i:70795401 original size:19 final size:20
Alignment explanation
Indices: 70795374--70795413 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
70795364 TTTTGGTTTC
70795374 TTTTATTTC-TATTTTTATT
1 TTTTATTTCTTATTTTTATT
* *
70795393 TTTTCTTTCTTTTTTTTATT
1 TTTTATTTCTTATTTTTATT
70795413 T
1 T
70795414 AAGCAAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTATTTCTTATTTTTATT
Found at i:70801684 original size:36 final size:36
Alignment explanation
Indices: 70801644--70801713 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
70801634 TTAGCAGTGT
* *
70801644 TATCCACTAGTGTGTCTATATGGTGTAACAAAAAAG
1 TATCCACCAGTGTGTCTATATGATGTAACAAAAAAG
70801680 TATCCACCAGTGTGTCTATATGATGTAACAAAAA
1 TATCCACCAGTGTGTCTATATGATGTAACAAAAA
70801714 TTATCTTTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (36 bp):
TATCCACCAGTGTGTCTATATGATGTAACAAAAAAG
Found at i:70804477 original size:31 final size:31
Alignment explanation
Indices: 70804439--70804501 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
70804429 GATGGTATGA
70804439 CCTGGATTGCCAGAGTGATACTCACATCGAG
1 CCTGGATTGCCAGAGTGATACTCACATCGAG
70804470 CCTGGATTGCCAGAGTGATACTCACATCGAG
1 CCTGGATTGCCAGAGTGATACTCACATCGAG
70804501 C
1 C
70804502 ATTGGCATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.22
Consensus pattern (31 bp):
CCTGGATTGCCAGAGTGATACTCACATCGAG
Found at i:70808588 original size:20 final size:21
Alignment explanation
Indices: 70808565--70808614 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 21
70808555 ATGACATTAG
*
70808565 ACAATTAAATAAAT-TAATGC
1 ACAAATAAATAAATCTAATGC
70808585 ACAAATAAATAAATCTAATATGC
1 ACAAATAAATAAATCT-A-ATGC
70808608 ACAAATA
1 ACAAATA
70808615 CTAAAAAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 13 0.50
21 1 0.04
22 1 0.04
23 11 0.42
ACGTcount: A:0.58, C:0.12, G:0.04, T:0.26
Consensus pattern (21 bp):
ACAAATAAATAAATCTAATGC
Found at i:70809716 original size:27 final size:27
Alignment explanation
Indices: 70809683--70809744 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
70809673 ACCTAAATTT
70809683 AGATGTAAAAACCTTATGGTTTCATTA
1 AGATGTAAAAACCTTATGGTTTCATTA
*
70809710 AGATGTAAAAACCTTATGGTTTTATTA
1 AGATGTAAAAACCTTATGGTTTCATTA
*
70809737 AAATGTAA
1 AGATGTAA
70809745 CACCTACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (27 bp):
AGATGTAAAAACCTTATGGTTTCATTA
Found at i:70815096 original size:40 final size:40
Alignment explanation
Indices: 70815051--70815216 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
70815041 CGGAATATAA
70815051 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
70815091 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
70815131 CCGGATAT-ACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
70815170 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
70815209 CCGGATAT
1 CCGGATAT
70815217 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
39 46 0.44
40 59 0.56
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:70815173 original size:39 final size:38
Alignment explanation
Indices: 70815067--70815178 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 38
70815057 ATAATCACGT
* * *
70815067 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATA-TACAACTA
* *
70815107 GCACGAATGCCTTCGGGCCTTAGCCCGGATATACCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATACAACTA
*
70815146 GCACAATTGCCTTCGGGTCTTAACCCGGATATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATA
70815179 ATTTCCAGCA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATACAACTA
Found at i:70815200 original size:79 final size:78
Alignment explanation
Indices: 70815067--70815216 Score: 196
Period size: 79 Copynumber: 1.9 Consensus size: 78
70815057 ATAATCACGT
*
70815067 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
70815132 CGGATATACCACTA
65 CGGATATACCACTA
* * ** * *
70815146 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
70815209 CCGGATAT
64 CCGGATAT
70815217 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 17 0.27
79 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATACCACTA
Found at i:70816061 original size:17 final size:19
Alignment explanation
Indices: 70816038--70816083 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
70816028 AAGAAGCATG
70816038 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
70816056 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
70816074 AATCATGCTC
1 AATCATGCTC
70816084 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:70827323 original size:40 final size:40
Alignment explanation
Indices: 70827201--70827404 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
70827191 ATTAAATGAT
* * ** * *
70827201 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
* * * *
70827241 ATCCGGGTTAAGA-CCGAA-GCAATT-ATGCTAG-TGACTAA
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TTAA
70827279 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
* * * **
70827319 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
* * *
70827359 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
70827399 ATCCGG
1 ATCCGG
70827405 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
37 1 0.01
38 23 0.17
39 16 0.12
40 97 0.70
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
Found at i:70827376 original size:80 final size:76
Alignment explanation
Indices: 70827200--70827404 Score: 221
Period size: 80 Copynumber: 2.6 Consensus size: 76
70827190 AATTAAATGA
* * ** * *
70827200 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCGAAGCAATT
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCGAAGCAATT
*
70827265 ATGCTAGTGAC
66 ATGCAAGTGAC
* *
70827276 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGA-CCGAA-GC
* * *
70827341 ATTTGTGCAAGTCGTTC
62 AATTATGCAAGT-G-AC
* * *
70827358 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
70827405 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 15, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
76 1 0.01
78 45 0.42
79 5 0.05
80 54 0.50
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (76 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCGAAGCAATT
ATGCAAGTGAC
Found at i:70831025 original size:40 final size:40
Alignment explanation
Indices: 70830976--70831143 Score: 196
Period size: 40 Copynumber: 4.2 Consensus size: 40
70830966 TCTTCGGAAT
* * *
70830976 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* * *** *
70831015 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
70831055 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
* *
70831095 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTAGCACAAATGCCTTCGGGTC
70831135 TTAGCCCGG
1 TTAGCCCGG
70831144 GTATCATTCA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 103 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTAGCACAAATGCCTTCGGGTC
Found at i:70836835 original size:40 final size:40
Alignment explanation
Indices: 70836780--70837001 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
70836770 TATTCGAATG
70836780 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
70836820 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
70836860 ATATCTAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
70836900 ATATCTGGGCTAAGTCCCGAAGACATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
70836940 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
70836980 ATATCC-GCCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
70837002 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.08
40 151 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:70845171 original size:2 final size:2
Alignment explanation
Indices: 70845158--70845218 Score: 61
Period size: 2 Copynumber: 30.5 Consensus size: 2
70845148 GGTTGATGAG
* * ** *
70845158 AT AT AT AA AT AT AT AT AT GT AT AT AT AT AT -T CGG CT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
70845200 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
70845219 GATTTGATGT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (2 bp):
AT
Found at i:70846427 original size:39 final size:38
Alignment explanation
Indices: 70846366--70846497 Score: 167
Period size: 39 Copynumber: 3.4 Consensus size: 38
70846356 TATATGAGAT
*
70846366 TGGAAATATATCCGGACATGAGGTCCGCAGGCTTTACGC
1 TGGAAATATATCCGGACTTGAGGTCCGCAGGC-TTACGC
* * *
70846405 TGGAAATATATCCGGGCTTGAGGTCCGTAGGCTATATGC
1 TGGAAATATATCCGGACTTGAGGTCCGCAGGCT-TACGC
*
70846444 TGGAAATATATCTGGACTTGAGGTCCGCAGGC-TACGTGC
1 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTTAC--GC
*
70846483 TGGAAAAATATCCGG
1 TGGAAATATATCCGG
70846498 GTTAAAGACT
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
37 2 0.03
38 1 0.01
39 77 0.96
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (38 bp):
TGGAAATATATCCGGACTTGAGGTCCGCAGGCTTACGC
Found at i:70846515 original size:78 final size:77
Alignment explanation
Indices: 70846366--70846515 Score: 178
Period size: 78 Copynumber: 1.9 Consensus size: 77
70846356 TATATGAGAT
* * * * *
70846366 TGGAAATATATCCGGACATGAGGTCCGCAGGCTTTACGCTGGAAATATATCCGGGCTTGAGGTCC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGC-TTACGCTGGAAAAATATCCGGGCTTAAAGACA
*
70846431 GTAGGCTATATGC
65 GCAGGCTATATGC
* *
70846444 TGGAAATATATCTGGACTTGAGGTCCGCAGGC-TACGTGCTGGAAAAATATCCGGG-TTAAAGAC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTTAC--GCTGGAAAAATATCCGGGCTTAAAGAC
70846507 TAGCAGGCT
64 -AGCAGGCT
70846516 TACGCTAGTA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
76 3 0.05
77 5 0.08
78 53 0.87
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (77 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTTACGCTGGAAAAATATCCGGGCTTAAAGACAG
CAGGCTATATGC
Found at i:70849665 original size:30 final size:30
Alignment explanation
Indices: 70849629--70849698 Score: 106
Period size: 30 Copynumber: 2.4 Consensus size: 30
70849619 TTTCAAAGAT
*
70849629 AGATTTGAGATCGGCTTATTATCAGTTGCG
1 AGATTTGAGATCGGCTTATTATCAATTGCG
*
70849659 AGATTTGAGATCGGGTTATTATCAATTGCG
1 AGATTTGAGATCGGCTTATTATCAATTGCG
*
70849689 AG-TTCGAGAT
1 AGATTTGAGAT
70849699 TCAGATATAC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
29 7 0.19
30 30 0.81
ACGTcount: A:0.26, C:0.11, G:0.27, T:0.36
Consensus pattern (30 bp):
AGATTTGAGATCGGCTTATTATCAATTGCG
Found at i:70854480 original size:39 final size:39
Alignment explanation
Indices: 70854426--70854518 Score: 150
Period size: 39 Copynumber: 2.4 Consensus size: 39
70854416 TATATGAGAT
**
70854426 TGGAAATATATCCGGACATGAGGTCCGCAGGCTTTATGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGC
*
70854465 TGGAAATATATCCGGACATGAGGTCCGCAGGCTACGTGC
1 TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGC
*
70854504 TGGAAAAATATCCGG
1 TGGAAATATATCCGG
70854519 GTTAAAGACC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (39 bp):
TGGAAATATATCCGGACATGAGGTCCGCAGGCTACATGC
Found at i:70856922 original size:23 final size:24
Alignment explanation
Indices: 70856895--70856940 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
70856885 GTCCATGTGA
*
70856895 TATGGCTTGGTTTTGGT-TATGAT
1 TATGGCTTGATTTTGGTATATGAT
*
70856918 TATGGTTTGATTTTGGTATATGA
1 TATGGCTTGATTTTGGTATATGA
70856941 AATGTGATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.17, C:0.02, G:0.28, T:0.52
Consensus pattern (24 bp):
TATGGCTTGATTTTGGTATATGAT
Found at i:70862255 original size:39 final size:39
Alignment explanation
Indices: 70862188--70862339 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
70862178 AAATGTTCGA
* *
70862188 GTGATATCCGGGCT-AGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
70862226 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
70862265 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* * *
70862304 GTGATATTCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
70862340 GGTTACCATA
Statistics
Matches: 105, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 14 0.13
39 74 0.70
40 17 0.16
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:70862364 original size:40 final size:39
Alignment explanation
Indices: 70862189--70862370 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
70862179 AATGTTCGAG
* * *
70862189 TGATATCCGGGCT-AGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
70862227 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
70862266 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * *
70862305 TGATATTCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
70862345 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
70862371 GTTTGAACGA
Statistics
Matches: 127, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
38 13 0.10
39 74 0.58
40 40 0.31
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:70874164 original size:40 final size:40
Alignment explanation
Indices: 70874037--70874166 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
70874027 ATGCTGGAAA
* *
70874037 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
70874077 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
70874117 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
70874157 TTATATCCGG
1 TTATATCCGG
70874167 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:70881755 original size:14 final size:16
Alignment explanation
Indices: 70881731--70881763 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
70881721 ATTTTCAATG
70881731 TTTATTATGTGTGA-A
1 TTTATTATGTGTGACA
70881746 TTTA-TATGTGTGACA
1 TTTATTATGTGTGACA
70881761 TTT
1 TTT
70881764 TCGTGCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.24, C:0.03, G:0.18, T:0.55
Consensus pattern (16 bp):
TTTATTATGTGTGACA
Found at i:70882929 original size:43 final size:43
Alignment explanation
Indices: 70882833--70882929 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
70882823 ATCTGTGTTC
* *
70882833 TCATGTAAGAACATGTCTGGGAGGTTGGCATCGATATGTGATTA
1 TCATGTAAG-ACATGTCTGGGAAGTTGGCATCGACATGTGATTA
* *
70882877 TGA-GGAAGACGATGTCTGGGACAG-TGGCATCGACATGTGATTA
1 TCATGTAAGAC-ATGTCTGGGA-AGTTGGCATCGACATGTGATTA
70882920 -CATGTAAGAC
1 TCATGTAAGAC
70882930 CACGTCGGGA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
42 3 0.07
43 38 0.86
44 3 0.07
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (43 bp):
TCATGTAAGACATGTCTGGGAAGTTGGCATCGACATGTGATTA
Found at i:70887339 original size:42 final size:43
Alignment explanation
Indices: 70887284--70887384 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
70887274 TGACTTATGA
* *
70887284 ATTACATGTAAGACCATGTCTGAGACA-TCGGCATC-GTATTTG
1 ATTACATGTAAGACCATATCTGAGACAGT-GGCATCAATATTTG
* * * *
70887326 ATTTCATGTAAGACCCTATTTGGGACAGTGGCATCAATATTTG
1 ATTACATGTAAGACCATATCTGAGACAGTGGCATCAATATTTG
*
70887369 GTTACATGTAAGACCA
1 ATTACATGTAAGACCA
70887385 CGTATGGGAC
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 28 0.58
43 20 0.42
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.32
Consensus pattern (43 bp):
ATTACATGTAAGACCATATCTGAGACAGTGGCATCAATATTTG
Found at i:70887393 original size:43 final size:42
Alignment explanation
Indices: 70887284--70887402 Score: 111
Period size: 43 Copynumber: 2.8 Consensus size: 42
70887274 TGACTTATGA
* * * *
70887284 ATTACATGTAAGACCATGTCTGAGACA-TCGGCATCGTATTTG
1 ATTACATGTAAGACCACGTATGGGACAGT-GGCATCATATTTG
*
70887326 ATTTCATGTAAGACC-C-TATTTGGGACAGTGGCATCAATATTTG
1 ATTACATGTAAGACCACGTA--TGGGACAGTGGCATC-ATATTTG
*
70887369 GTTACATGTAAGACCACGTATGGGAC-GTTGGCAT
1 ATTACATGTAAGACCACGTATGGGACAG-TGGCAT
70887403 TGTACGAGCT
Statistics
Matches: 63, Mismatches: 7, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
40 1 0.02
42 27 0.43
43 32 0.51
44 1 0.02
45 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
ATTACATGTAAGACCACGTATGGGACAGTGGCATCATATTTG
Found at i:70887955 original size:23 final size:24
Alignment explanation
Indices: 70887929--70887974 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
70887919 TGCCATGTGA
*
70887929 TATGGCTTGGTTTTGGT-TATGAT
1 TATGGCTTGATTTTGGTATATGAT
*
70887952 TATGGTTTGATTTTGGTATATGA
1 TATGGCTTGATTTTGGTATATGA
70887975 AATGTGATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.17, C:0.02, G:0.28, T:0.52
Consensus pattern (24 bp):
TATGGCTTGATTTTGGTATATGAT
Found at i:70888423 original size:12 final size:12
Alignment explanation
Indices: 70888406--70888462 Score: 98
Period size: 12 Copynumber: 4.8 Consensus size: 12
70888396 GAACCACACA
70888406 GTCGCACACGCG
1 GTCGCACACGCG
70888418 GTCGCACGA-GCG
1 GTCGCAC-ACGCG
70888430 GTCGCACACGCG
1 GTCGCACACGCG
70888442 GTCGCACACGCG
1 GTCGCACACGCG
70888454 GTCGCACAC
1 GTCGCACAC
70888463 ACGGGTGTGT
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
11 1 0.02
12 41 0.95
13 1 0.02
ACGTcount: A:0.18, C:0.40, G:0.33, T:0.09
Consensus pattern (12 bp):
GTCGCACACGCG
Found at i:70890642 original size:40 final size:40
Alignment explanation
Indices: 70890597--70890723 Score: 159
Period size: 40 Copynumber: 3.2 Consensus size: 40
70890587 CGGAATACAA
70890597 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
70890637 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
70890677 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
70890717 CCGGATA
1 CCGGATA
70890724 AAATTTCCAG
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 71 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:70901961 original size:46 final size:46
Alignment explanation
Indices: 70901894--70902114 Score: 234
Period size: 46 Copynumber: 4.8 Consensus size: 46
70901884 TATTTGGGCA
*
70901894 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
70901940 TCCGAGCTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
70901985 TCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGAT--ATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
70902032 TCCAAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * **
70902078 CCCGAGCTCATTGAGTTGAGTCTGAGTTTGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70902115 GCTTACTAAG
Statistics
Matches: 142, Mismatches: 25, Indels: 16
0.78 0.14 0.09
Matches are distributed among these distances:
43 4 0.03
45 45 0.32
46 59 0.42
47 26 0.18
48 4 0.03
50 4 0.03
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:70906776 original size:22 final size:22
Alignment explanation
Indices: 70906748--70906801 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
70906738 ACTAAGTCAC
70906748 TTGGTATTAGATATATGACTGA
1 TTGGTATTAGATATATGACTGA
*
70906770 TTGGTATTAGATATGTGACTGA
1 TTGGTATTAGATATATGACTGA
*
70906792 TTGGTCTTAG
1 TTGGTATTAG
70906802 TGCTAGTGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.26, C:0.06, G:0.26, T:0.43
Consensus pattern (22 bp):
TTGGTATTAGATATATGACTGA
Found at i:70916034 original size:37 final size:37
Alignment explanation
Indices: 70915984--70916143 Score: 284
Period size: 37 Copynumber: 4.3 Consensus size: 37
70915974 TTATTACGAA
70915984 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
70916021 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
70916058 GTCTTACCCGGACGTAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
* *
70916095 GTCTTACCCGGACATAATCTCCACACATAGTCATCGA
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
70916132 GTCTCACCCGGA
1 GTCTTACCCGGA
70916144 ATATATTTCC
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 118 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:70916259 original size:48 final size:48
Alignment explanation
Indices: 70916188--70917075 Score: 1209
Period size: 48 Copynumber: 18.8 Consensus size: 48
70916178 TGTTACAACA
* *
70916188 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70916236 TTCACATTCGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
70916284 TTCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70916332 TTCACATTAGCCATTCGGCTTTACGACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70916380 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
70916428 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * * * *
70916476 TTCACATTACCACATAT--AC-ATATCACACAT--ATATTTCACAT-TA-
1 TTCACATTAGC-CAT-TCGGCTTTACCACATATACATATCTCATATATAT
* * * * ** * * *
70916519 -GC-CATTCGGCTTTACCAC-ATA-TACATAT-C-TCATAT-A----TAT
1 TTCACATTAGCCATT-CGGCTTTACCACATATACAT-ATCTCATATATAT
* * *
70916558 TTCACATTAGCCATTCGCCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70916606 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
70916654 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
70916702 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
70916750 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70916798 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70916846 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTTATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
70916894 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
70916942 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
70916990 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
70917038 TTCACATTAGCCATTCGGCTTTACCACATATACATATC
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATC
70917076 ACACAAAACT
Statistics
Matches: 747, Mismatches: 74, Indels: 38
0.87 0.09 0.04
Matches are distributed among these distances:
38 2 0.00
39 1 0.00
40 5 0.01
41 21 0.03
42 15 0.02
43 3 0.00
44 4 0.01
45 9 0.01
47 8 0.01
48 675 0.90
49 3 0.00
50 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:70916304 original size:96 final size:96
Alignment explanation
Indices: 70916188--70917080 Score: 1348
Period size: 96 Copynumber: 9.4 Consensus size: 96
70916178 TGTTACAACA
* * * *
70916188 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
*
70916253 GCTTTACGACATATACATATCTCATATATAT
66 GCTTTACCACATATACATATCTCATATATAT
* *
70916284 TTCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
*
70916349 GCTTTACGACATATACATATCTCATATATAT
66 GCTTTACCACATATACATATCTCATATATAT
*
70916380 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
70916445 GCTTTACCACATATACATATCTCATATATAT
66 GCTTTACCACATATACATATCTCATATATAT
* * * * * *
70916476 TTCACATTA-CCA-----C-ATA-TACATAT-C--A-CACATATAT-TTCACA-TT-AGCCATTC
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATT-TCACATTAGCCATTC
70916526 GGCTTTACCACATATACATATCTCATATATAT
65 GGCTTTACCACATATACATATCTCATATATAT
* *
70916558 TTCACATTAGCCATTCGCCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
*
70916623 GCTTTACCACATATACATATCTTATATATAT
66 GCTTTACCACATATACATATCTCATATATAT
* * *
70916654 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
* * *
70916719 GCTTTACCACATCTACATATCACACATATAT
66 GCTTTACCACATATACATATCTCATATATAT
*
70916750 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
* *
70916815 GCTTTACCACATATACATATCACACATATAT
66 GCTTTACCACATATACATATCTCATATATAT
* * * *
70916846 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTTATATATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
*
70916911 GCTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATATATAT
* * *
70916942 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
70917007 GCTTTACCACATATACATATCTCATATATAT
66 GCTTTACCACATATACATATCTCATATATAT
*
70917038 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACA
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACA
70917081 AAACTCAAAA
Statistics
Matches: 736, Mismatches: 45, Indels: 32
0.91 0.06 0.04
Matches are distributed among these distances:
82 49 0.07
83 6 0.01
84 10 0.01
85 1 0.00
87 1 0.00
88 7 0.01
89 4 0.01
90 7 0.01
91 1 0.00
93 1 0.00
94 10 0.01
95 6 0.01
96 633 0.86
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCACATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCTCATATATAT
Found at i:70916448 original size:144 final size:144
Alignment explanation
Indices: 70916188--70917075 Score: 1399
Period size: 144 Copynumber: 6.3 Consensus size: 144
70916178 TGTTACAACA
* * *
70916188 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
* * * *
70916253 GCTTTACGACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATACACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
70916318 TATCACACATATAT
131 TATCACACATATAT
*
70916332 TTCACATTAGCCATTCGGCTTTACGACATATACATATCTCATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
70916397 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
* *
70916462 TATCTCATATATAT
131 TATCACACATATAT
* *
70916476 TT--C---A--CA-------TTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
* * *
70916527 GCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGCCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
70916592 TATCACACATATAT
131 TATCACACATATAT
*
70916606 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
* * * * *
70916671 GCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCTTTACCACATCTACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
70916736 TATCACACATATAT
131 TATCACACATATAT
70916750 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
*
70916815 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
** *
70916880 TATCTTATATATAT
131 TATCACACATATAT
* * *
70916894 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
*
70916959 GCTTTACCACATCTACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
* *
70917024 TATCTCATATATAT
131 TATCACACATATAT
70917038 TTCACATTAGCCATTCGGCTTTACCACATATACATATC
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATC
70917076 ACACAAAACT
Statistics
Matches: 690, Mismatches: 40, Indels: 28
0.91 0.05 0.04
Matches are distributed among these distances:
130 118 0.17
132 1 0.00
135 1 0.00
137 4 0.01
139 1 0.00
142 1 0.00
144 564 0.82
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (144 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
TATCACACATATAT
Found at i:70916489 original size:34 final size:34
Alignment explanation
Indices: 70916448--70916518 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
70916438 CCATTCGGCT
* *
70916448 TTACCACATATACATATCTCATATATATTTCACA
1 TTACCACATATACATATCACACATATATTTCACA
70916482 TTACCACATATACATATCACACATATATTTCACA
1 TTACCACATATACATATCACACATATATTTCACA
70916516 TTA
1 TTA
70916519 GCCATTCGGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (34 bp):
TTACCACATATACATATCACACATATATTTCACA
Found at i:70916492 original size:82 final size:82
Alignment explanation
Indices: 70916400--70916566 Score: 334
Period size: 82 Copynumber: 2.0 Consensus size: 82
70916390 CCATTCGGCT
70916400 TTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 TTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
70916465 CTCATATATATTTCACA
66 CTCATATATATTTCACA
70916482 TTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 TTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
70916547 CTCATATATATTTCACA
66 CTCATATATATTTCACA
70916564 TTA
1 TTA
70916567 GCCATTCGCC
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 85 1.00
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.36
Consensus pattern (82 bp):
TTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
CTCATATATATTTCACA
Found at i:70920945 original size:46 final size:46
Alignment explanation
Indices: 70920895--70921070 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
70920885 TGGTTGAGCA
70920895 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70920941 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
70920986 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70921034 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70921071 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70921051 original size:93 final size:93
Alignment explanation
Indices: 70920892--70921063 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
70920882 GGATGGTTGA
* *
70920892 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70920957 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
70920985 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70921050 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
70921064 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70922401 original size:46 final size:46
Alignment explanation
Indices: 70922351--70922523 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
70922341 TGGTTGAGCA
*
70922351 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
70922397 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
70922442 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
70922490 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70922524 GGGCGGGTTA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70922507 original size:93 final size:93
Alignment explanation
Indices: 70922348--70922518 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
70922338 GGATGGTTGA
* *
70922348 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70922413 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
70922441 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70922506 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
70922519 ACTTAGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:70929938 original size:46 final size:45
Alignment explanation
Indices: 70929888--70930058 Score: 197
Period size: 44 Copynumber: 3.8 Consensus size: 45
70929878 TGGTTGAGCA
70929888 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
70929934 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
70929979 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-GAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
* *
70930025 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70930059 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 32 0.30
45 3 0.03
46 30 0.28
47 29 0.27
48 2 0.02
49 2 0.02
50 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:70933037 original size:22 final size:23
Alignment explanation
Indices: 70932990--70933093 Score: 79
Period size: 24 Copynumber: 4.4 Consensus size: 23
70932980 TAGCTCGTAT
* *
70932990 GAGCTTACTGATTCAGCTTGAA-A
1 GAGCTTACTGTTTCAGC-TCAATA
70933013 GAGCTTACTGTTT-AGCTCAATA
1 GAGCTTACTGTTTCAGCTCAATA
* *
70933035 GAGCTTCCCGTTTCCAGCTCAATCA
1 GAGCTTACTGTTT-CAGCTCAAT-A
* * *
70933060 -AGCTTAGTGTTATCAGTTCATTA
1 GAGCTTACTGTT-TCAGCTCAATA
70933083 TGAGCTTACTG
1 -GAGCTTACTG
70933094 GCCATGTCTC
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
21 3 0.05
22 15 0.23
23 13 0.20
24 23 0.36
25 10 0.16
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCAATA
Found at i:70934211 original size:20 final size:20
Alignment explanation
Indices: 70934186--70934226 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
70934176 AGGCACACGG
*
70934186 GCGTGTCTAAGGCTGTGTGA
1 GCGTGTCTAAGGCCGTGTGA
*
70934206 GCGTGTGTAAGGCCGTGTGA
1 GCGTGTCTAAGGCCGTGTGA
70934226 G
1 G
70934227 GCACACGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.44, T:0.27
Consensus pattern (20 bp):
GCGTGTCTAAGGCCGTGTGA
Found at i:70937626 original size:70 final size:71
Alignment explanation
Indices: 70937475--70937637 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
70937465 GAGATGTATC
70937475 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
70937540 AGGACA
66 AGGACA
70937546 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
70937610 CGGACA
66 AGGACA
70937616 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
70937638 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:70945104 original size:71 final size:69
Alignment explanation
Indices: 70945016--70945177 Score: 306
Period size: 71 Copynumber: 2.3 Consensus size: 69
70945006 GAGATGTATC
70945016 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTG-
70945081 AGGACA
64 AGGACA
70945087 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
70945152 GACA
66 GACA
70945156 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
70945178 AGACAAATCG
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 28 0.31
70 23 0.25
71 40 0.44
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (69 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
GACA
Found at i:70948864 original size:28 final size:29
Alignment explanation
Indices: 70948824--70948895 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
70948814 AAAATTGTAC
*
70948824 AGCACTAAGTGTGCGAGTTTG-AT-TATAT
1 AGCACTAAGTGTGCGAG-CTGAATGTATAT
*
70948852 AGCACTAAATGTGCGAGCTGAATGTATAT
1 AGCACTAAGTGTGCGAGCTGAATGTATAT
70948881 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
70948896 GATTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.05
28 18 0.46
29 19 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAATGTATAT
Found at i:70955971 original size:40 final size:40
Alignment explanation
Indices: 70955920--70956107 Score: 288
Period size: 40 Copynumber: 4.7 Consensus size: 40
70955910 AGCTACTGCT
70955920 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
70955960 CAATTGCCTTCGAGACTTAGCCTGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
70956000 CAATTGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
70956040 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
70956080 AAAATGCCTTCGGG-CTTAGCCTGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
70956108 CAATCCGAAT
Statistics
Matches: 134, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 12 0.09
40 122 0.91
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:70961006 original size:28 final size:28
Alignment explanation
Indices: 70960919--70960999 Score: 126
Period size: 28 Copynumber: 2.9 Consensus size: 28
70960909 AATATCATTT
70960919 ATATGGCCCATCGGCCTAATTCACGTTC
1 ATATGGCCCATCGGCCTAATTCACGTTC
70960947 ATATGGCCCATCGGCCTAATTCACGTTC
1 ATATGGCCCATCGGCCTAATTCACGTTC
** *
70960975 ATATGGATCATCAGGCCCAATTCAC
1 ATATGGCCCATC-GGCCTAATTCAC
70961000 ATTATATTCA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 38 0.78
29 11 0.22
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (28 bp):
ATATGGCCCATCGGCCTAATTCACGTTC
Found at i:70963047 original size:28 final size:28
Alignment explanation
Indices: 70962945--70963045 Score: 121
Period size: 28 Copynumber: 3.6 Consensus size: 28
70962935 CTATGTACGA
*
70962945 CACTTAGTGTGCGAGATATTGAGTATGA
1 CACTTAGTGTGCGAGATATTGAGTATGG
* * * * *
70962973 CACTTAGTGTTCGAAACATTGAGAACGG
1 CACTTAGTGTGCGAGATATTGAGTATGG
* *
70963001 CACTTGGTGTGCGAGATGTTGAGTATGG
1 CACTTAGTGTGCGAGATATTGAGTATGG
*
70963029 CACTTAGTGTGTGAGAT
1 CACTTAGTGTGCGAGAT
70963046 GTCAAATATA
Statistics
Matches: 58, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCGAGATATTGAGTATGG
Found at i:70965746 original size:37 final size:36
Alignment explanation
Indices: 70965696--70965779 Score: 123
Period size: 37 Copynumber: 2.3 Consensus size: 36
70965686 TGTCAGTGCG
70965696 TGTAAGACCATAGCTGGGCTATGGCATCATGATGACA
1 TGTAAGACCATAGCTGGGCTATGGCATCATGAT-ACA
* ** *
70965733 TGTAAGACTATAGCTGGGCTATGGCATTGTGATACG
1 TGTAAGACCATAGCTGGGCTATGGCATCATGATACA
70965769 TGTAAGACCAT
1 TGTAAGACCAT
70965780 GTTTGGGACA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 12 0.29
37 30 0.71
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (36 bp):
TGTAAGACCATAGCTGGGCTATGGCATCATGATACA
Found at i:70965824 original size:48 final size:48
Alignment explanation
Indices: 70965768--70966033 Score: 207
Period size: 48 Copynumber: 5.6 Consensus size: 48
70965758 ATTGTGATAC
* *
70965768 GTGTAAGACCATGTTTGGGACATGGCATCGGTGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGAGTTGATATGTGTGCTA
* * ** * * * *
70965816 GTGTAAGACCATGTCTGGGACATGGTATC-GACTACATTACGGGAGATA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGAGTTGA-TATGTGTGCTA
* * * *
70965864 GTGTAAAACCATGTCTTGGACATGGCATCGGCGTTGTTATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGAGTTGATATGTGTGCTA
* * * * * *
70965912 GTGTAAGACCATGTCTGGGACAT-GCATCAGCA-ATGAGACGAGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATC-GGAGTTGATATGTGTGCTA
* * * * * ** *
70965959 ATGTAAGACCATGTCTAGGACATGACATCGG-CTTCGACATGTAAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGAGTT-GATATGTGTGCTA
* *
70966007 GTGTAAGACCATGTCTAGGACACGGCA
1 GTGTAAGACCATGTCTGGGACATGGCA
70966034 CTGGCATTTT
Statistics
Matches: 167, Mismatches: 45, Indels: 12
0.75 0.20 0.05
Matches are distributed among these distances:
47 40 0.24
48 125 0.75
49 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGAGTTGATATGTGTGCTA
Found at i:70969560 original size:40 final size:40
Alignment explanation
Indices: 70969500--70969650 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
70969490 ATAACCATGT
* * *
70969500 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCTC
** * *
70969540 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCTC
* *
70969580 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-C
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCTC
* *
70969619 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
70969651 CATTCAATTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 15 0.16
40 76 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCTC
Found at i:70969634 original size:80 final size:79
Alignment explanation
Indices: 70969500--70969650 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
70969490 ATAACCATGT
*
70969500 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
70969565 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * * * *
70969580 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
70969643 CCGGATAT
64 CCGGATAT
70969651 CATTCAATTT
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 17 0.27
80 46 0.73
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:70971643 original size:117 final size:117
Alignment explanation
Indices: 70971437--70971671 Score: 461
Period size: 117 Copynumber: 2.0 Consensus size: 117
70971427 GCATAGCAAA
*
70971437 GAACAGATTAGAATCTTAGGTCGTGAGATTGAAAAGTTGATAAATCTGACGATATGTGAGAAATT
1 GAACAGATCAGAATCTTAGGTCGTGAGATTGAAAAGTTGATAAATCTGACGATATGTGAGAAATT
70971502 GATGAGACTAGTGAAAGTAAATCACTAATCTACTCTTTGATAAGATTTTCGG
66 GATGAGACTAGTGAAAGTAAATCACTAATCTACTCTTTGATAAGATTTTCGG
70971554 GAACAGATCAGAATCTTAGGTCGTGAGATTGAAAAGTTGATAAATCTGACGATATGTGAGAAATT
1 GAACAGATCAGAATCTTAGGTCGTGAGATTGAAAAGTTGATAAATCTGACGATATGTGAGAAATT
70971619 GATGAGACTAGTGAAAGTAAATCACTAATCTACTCTTTGATAAGATTTTCGG
66 GATGAGACTAGTGAAAGTAAATCACTAATCTACTCTTTGATAAGATTTTCGG
70971671 G
1 G
70971672 GACGAAAATC
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
117 117 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.30
Consensus pattern (117 bp):
GAACAGATCAGAATCTTAGGTCGTGAGATTGAAAAGTTGATAAATCTGACGATATGTGAGAAATT
GATGAGACTAGTGAAAGTAAATCACTAATCTACTCTTTGATAAGATTTTCGG
Found at i:70972877 original size:41 final size:40
Alignment explanation
Indices: 70972815--70972902 Score: 104
Period size: 41 Copynumber: 2.2 Consensus size: 40
70972805 TGACAACATA
* *
70972815 TCGGTTAAATGTGGCACTTAGTGTGAGGTTAGAAAATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGAGGTTA-AAAATAGCT
* * ** *
70972856 TTGGCTAAATATGGTACTTAGTGTGCTGTTAAAGATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGAGGTTAAAAATAGCT
70972896 TCGGCTA
1 TCGGCTA
70972903 TGTACGACAC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 14 0.36
41 25 0.64
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.34
Consensus pattern (40 bp):
TCGGCTAAATATGGCACTTAGTGTGAGGTTAAAAATAGCT
Found at i:70973007 original size:28 final size:27
Alignment explanation
Indices: 70972910--70973008 Score: 126
Period size: 28 Copynumber: 3.6 Consensus size: 27
70972900 CTATGTACGA
* *
70972910 CACTTAATGTGTGAGATTTGAGTATGG
1 CACTTAGTGTGCGAGATTTGAGTATGG
* * *
70972937 CACTTAGTGTGCGAAACATTGAGAATGG
1 CACTTAGTGTGCGAGA-TTTGAGTATGG
70972965 CACTTAGTGTGCGAGATGTTGAGTATGG
1 CACTTAGTGTGCGAGAT-TTGAGTATGG
*
70972993 CACTTAGTGTACGAGA
1 CACTTAGTGTGCGAGA
70973009 CGTCAAATAT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 13 0.21
28 48 0.79
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (27 bp):
CACTTAGTGTGCGAGATTTGAGTATGG
Found at i:70973019 original size:28 final size:28
Alignment explanation
Indices: 70972961--70973019 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
70972951 AACATTGAGA
* * ** *
70972961 ATGGCACTTAGTGTGCGAGATGTTGAGT
1 ATGGCACTTAGTGTACGAGACGTCAAAT
70972989 ATGGCACTTAGTGTACGAGACGTCAAAT
1 ATGGCACTTAGTGTACGAGACGTCAAAT
70973017 ATG
1 ATG
70973020 CAACAGTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAGACGTCAAAT
Found at i:70975986 original size:19 final size:19
Alignment explanation
Indices: 70975962--70976003 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
70975952 ACCAATTTTT
*
70975962 TCATGAGAGAATGATGAAA
1 TCATGAGAGAACGATGAAA
70975981 TCATGAGAGAACGATGAAA
1 TCATGAGAGAACGATGAAA
70976000 TCAT
1 TCAT
70976004 ATAAGCTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.45, C:0.10, G:0.24, T:0.21
Consensus pattern (19 bp):
TCATGAGAGAACGATGAAA
Found at i:70984025 original size:20 final size:20
Alignment explanation
Indices: 70983959--70984025 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
70983949 ATTTTGATAA
*
70983959 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70983979 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70983999 ACTTGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70984019 ACGTGAT
1 ACATGAT
70984026 GTAATCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70984107 original size:23 final size:24
Alignment explanation
Indices: 70984077--70984143 Score: 118
Period size: 23 Copynumber: 2.8 Consensus size: 24
70984067 GGAAGTGAAT
70984077 AAGGGCTTATGCCCCAGTTATT-A
1 AAGGGCTTATGCCCCAGTTATTAA
70984100 AAGGGCTTATGCCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTATTAA
*
70984124 AAGGGCTTTTGCCCCAGTTA
1 AAGGGCTTATGCCCCAGTTA
70984144 CTGAAAGAGG
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
23 22 0.52
24 20 0.48
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
AAGGGCTTATGCCCCAGTTATTAA
Found at i:70984150 original size:24 final size:23
Alignment explanation
Indices: 70984077--70984143 Score: 107
Period size: 24 Copynumber: 2.9 Consensus size: 23
70984067 GGAAGTGAAT
*
70984077 AAGGGCTTATGCCCCAGTTATTA
1 AAGGGCTTATGCCCCAGTTATAA
70984100 AAGGGCTTATGCCCCAGTTATTAA
1 AAGGGCTTATGCCCCAGTTA-TAA
*
70984124 AAGGGCTTTTGCCCCAGTTA
1 AAGGGCTTATGCCCCAGTTA
70984144 CTGAAAGAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 20 0.49
24 21 0.51
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (23 bp):
AAGGGCTTATGCCCCAGTTATAA
Found at i:70984399 original size:31 final size:31
Alignment explanation
Indices: 70984361--70984424 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
70984351 ACCGTACAGT
*
70984361 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
70984392 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
70984423 AA
1 AA
70984425 TTTGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:70987851 original size:40 final size:40
Alignment explanation
Indices: 70987814--70987999 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
70987804 GCTACTCGTT
* * *
70987814 CAAATGTCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
70987854 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
70987894 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
70987934 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
70987975 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
70988000 CATCATTCGA
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:70991597 original size:29 final size:29
Alignment explanation
Indices: 70991508--70991625 Score: 102
Period size: 29 Copynumber: 4.2 Consensus size: 29
70991498 TACATACCTG
*
70991508 TATATGGCCCA-CTAGGTCCAA-T-ATCATT
1 TATATGGCCCATC-AGGCCCAATTCA-CATT
* **
70991536 TATATGGCCCATC-GGCCTAATTCATGTT
1 TATATGGCCCATCAGGCCCAATTCACATT
*
70991564 CATATGGCCCATCAGGCCCAATTCACATT
1 TATATGGCCCATCAGGCCCAATTCACATT
* * * *
70991593 TATATGGTCGATCTGGCCCAAATCACA-T
1 TATATGGCCCATCAGGCCCAATTCACATT
70991621 TATAT
1 TATAT
70991626 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 13, Indels: 8
0.78 0.14 0.09
Matches are distributed among these distances:
27 5 0.07
28 32 0.44
29 36 0.49
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (29 bp):
TATATGGCCCATCAGGCCCAATTCACATT
Found at i:70993641 original size:28 final size:28
Alignment explanation
Indices: 70993564--70993666 Score: 71
Period size: 28 Copynumber: 3.7 Consensus size: 28
70993554 CAATGTACGA
* * ** * *
70993564 CACTTAGTGTGCTAGATATTGAGTATGA
1 CACTTAGTGTGCGAGATGTTGAAAACGG
* * **
70993592 CACTTAGTGTTCGAAACATTGAAAACGG
1 CACTTAGTGTGCGAGATGTTGAAAACGG
* ** *
70993620 CACTTGGTGTGCGAGATGTTGAGTATGG
1 CACTTAGTGTGCGAGATGTTGAAAACGG
*
70993648 CACTTAGTGTGTGAGATGT
1 CACTTAGTGTGCGAGATGT
70993667 CGAATATACA
Statistics
Matches: 57, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
CACTTAGTGTGCGAGATGTTGAAAACGG
Found at i:70996415 original size:36 final size:37
Alignment explanation
Indices: 70996312--70996397 Score: 138
Period size: 37 Copynumber: 2.4 Consensus size: 37
70996302 CATGTCAGTG
*
70996312 CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATGA
1 CGTGTAAGACCATAGCTGGGCTATGGCATTGTGATGA
* *
70996349 CATGTAAGACTATAGCTGGGCTATGGCATTGTGAT-A
1 CGTGTAAGACCATAGCTGGGCTATGGCATTGTGATGA
70996385 CGTGTAAGACCAT
1 CGTGTAAGACCAT
70996398 GTTTGGGACA
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 12 0.27
37 32 0.73
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (37 bp):
CGTGTAAGACCATAGCTGGGCTATGGCATTGTGATGA
Found at i:70996442 original size:48 final size:47
Alignment explanation
Indices: 70996386--70996652 Score: 212
Period size: 48 Copynumber: 5.6 Consensus size: 47
70996376 ATTGTGATAC
* *
70996386 GTGTAAGACCATGTTTGGGACATGGCATTGGTGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGG-GTTGATATGTGTGCTA
* **** * * * *
70996434 GTGTAAGACCATGTCTGGGACATGGTATCGGCCACATTACGAGAGATA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGGTTGA-TATGTGTGCTA
* * *
70996482 GTGTAAAACCATGTCTTGGACATGGCATCGGCGTTGTTATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGG-GTTGATATGTGTGCTA
*** * * *
70996530 GTGTAAGACCATGTCTGGGACAAT-GCATCAGCAATGAGATGAGAGCTA
1 GTGTAAGACCATGTCTGGGAC-ATGGCATC-GGGTTGATATGTGTGCTA
* * * * * ** *
70996578 ATGTAAGCCCATGTCTGGGACATGACATCGGCTTCGACATGTAAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGGTT-GATATGTGTGCTA
*
70996626 GTGTAAGACCATGTCTAGGACATGGCA
1 GTGTAAGACCATGTCTGGGACATGGCA
70996653 CTGGCATTTT
Statistics
Matches: 167, Mismatches: 46, Indels: 12
0.74 0.20 0.05
Matches are distributed among these distances:
47 5 0.03
48 159 0.95
49 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGGTTGATATGTGTGCTA
Found at i:70996574 original size:96 final size:97
Alignment explanation
Indices: 70996381--70996652 Score: 290
Period size: 96 Copynumber: 2.8 Consensus size: 97
70996371 ATGGCATTGT
* *
70996381 GATACGTGTAAGACCATGT-TTGGGACATGGCATTGGTGTTGATATGTGTGCTAGTGTAAGACCA
1 GATA-GTGTAAGACCATGTCTT-GGACATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCA
* * *
70996445 TGTCTGGGAC-ATGGTATCGGCCACATTACGAGA
64 TGTCTGGGACAATGGCATCAGCCACATGACGAGA
* *
70996478 GATAGTGTAAAACCATGTCTTGGACATGGCATCGGCGTTGTTATGTGTGCTAGTGTAAGACCATG
1 GATAGTGTAAGACCATGTCTTGGACATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATG
70996543 TCTGGGACAAT-GCATCAG-CA-ATGA-GATGA
66 TCTGGGACAATGGCATCAGCCACATGACGA-GA
* * * * * ** *
70996572 GAGCTAATGTAAGCCCATGTCTGGGACATGACATCGGC-TTCGACATGTAAGCCAGTGTAAGACC
1 GA--TAGTGTAAGACCATGTCTTGGACATGGCATCGGCGTT-GATATGTGTGCTAGTGTAAGACC
*
70996636 ATGTCTAGGAC-ATGGCA
63 ATGTCTGGGACAATGGCA
70996653 CTGGCATTTT
Statistics
Matches: 150, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
93 2 0.01
94 7 0.05
95 6 0.04
96 127 0.85
97 8 0.05
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (97 bp):
GATAGTGTAAGACCATGTCTTGGACATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATG
TCTGGGACAATGGCATCAGCCACATGACGAGA
Found at i:71000143 original size:41 final size:40
Alignment explanation
Indices: 71000098--71000200 Score: 111
Period size: 41 Copynumber: 2.5 Consensus size: 40
71000088 CAACATATCA
*
71000098 GCTAAATGTGGCACTTAGTGTGAGGTTAGAAAATAGCTTTG
1 GCTAAATGTGGCACTTAGTGTGAGGTTAG-AAATAGCTTCG
* * ** *
71000139 GCTAAATATGGTACTTAGTGTGCTGTTAGAGATAGCTTCG
1 GCTAAATGTGGCACTTAGTGTGAGGTTAGAAATAGCTTCG
71000179 GCT--ATGTACGGCACTTAGTGTG
1 GCTAAATGT--GGCACTTAGTGTG
71000201 TGAGATTTGA
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
38 3 0.06
40 24 0.46
41 25 0.48
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (40 bp):
GCTAAATGTGGCACTTAGTGTGAGGTTAGAAATAGCTTCG
Found at i:71000195 original size:40 final size:41
Alignment explanation
Indices: 71000098--71000200 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 41
71000088 CAACATATCA
** *
71000098 GCTAAATGTGGCACTTAGTGTGAGGTTAGAAAATAGCTTTG
1 GCTAAATACGGCACTTAGTGTGAGGTTAGAAAATAGCTTCG
* * ** *
71000139 GCTAAATATGGTACTTAGTGTGCTGTTAG-AGATAGCTTCG
1 GCTAAATACGGCACTTAGTGTGAGGTTAGAAAATAGCTTCG
**
71000179 GCTATGTACGGCACTTAGTGTG
1 GCTAAATACGGCACTTAGTGTG
71000201 TGAGATTTGA
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
40 27 0.52
41 25 0.48
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (41 bp):
GCTAAATACGGCACTTAGTGTGAGGTTAGAAAATAGCTTCG
Found at i:71000247 original size:28 final size:27
Alignment explanation
Indices: 71000188--71000286 Score: 110
Period size: 28 Copynumber: 3.6 Consensus size: 27
71000178 GGCTATGTAC
* * * *
71000188 GGCACTTAGTGTGTGAGATTTGAGTAT
1 GGCACTTAGTGTGCGAAAATTGAGAAT
71000215 GGCACTTAGTGTGCGAAACATTGAGAAT
1 GGCACTTAGTGTGCGAAA-ATTGAGAAT
* *
71000243 GGCACTTAGTGTGC-AAGATGTTGAGCAT
1 GGCACTTAGTGTGCGAA-A-ATTGAGAAT
71000271 GGCACTTAGTGTGCGA
1 GGCACTTAGTGTGCGA
71000287 GACGTCAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 18 0.29
28 43 0.69
29 1 0.02
ACGTcount: A:0.25, C:0.13, G:0.32, T:0.29
Consensus pattern (27 bp):
GGCACTTAGTGTGCGAAAATTGAGAAT
Found at i:71001966 original size:17 final size:17
Alignment explanation
Indices: 71001919--71001966 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 17
71001909 TTTAAGCACA
71001919 ACTTACTCATCACATCC
1 ACTTACTCATCACATCC
71001936 -C--ACT-A-CACAT-C
1 ACTTACTCATCACATCC
71001947 ACTTACTCATCACATCC
1 ACTTACTCATCACATCC
71001964 ACT
1 ACT
71001967 ACACATCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 12
0.68 0.00 0.32
Matches are distributed among these distances:
11 1 0.04
12 6 0.24
13 1 0.04
14 6 0.24
15 1 0.04
16 6 0.24
17 4 0.16
ACGTcount: A:0.31, C:0.42, G:0.00, T:0.27
Consensus pattern (17 bp):
ACTTACTCATCACATCC
Found at i:71001973 original size:27 final size:28
Alignment explanation
Indices: 71001919--71001974 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
71001909 TTTAAGCACA
71001919 ACTTACTCATCACATCCCACTACACATC
1 ACTTACTCATCACATCCCACTACACATC
71001947 ACTTACTCATCACAT-CCACTACACATC
1 ACTTACTCATCACATCCCACTACACATC
71001974 A
1 A
71001975 TATAATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 13 0.46
28 15 0.54
ACGTcount: A:0.34, C:0.41, G:0.00, T:0.25
Consensus pattern (28 bp):
ACTTACTCATCACATCCCACTACACATC
Found at i:71003292 original size:19 final size:19
Alignment explanation
Indices: 71003268--71003309 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
71003258 ACCAATTTTT
*
71003268 TCATGAGAGAATGATGAAA
1 TCATGAGAGAACGATGAAA
71003287 TCATGAGAGAACGATGAAA
1 TCATGAGAGAACGATGAAA
71003306 TCAT
1 TCAT
71003310 ATAAGCTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.45, C:0.10, G:0.24, T:0.21
Consensus pattern (19 bp):
TCATGAGAGAACGATGAAA
Found at i:71007518 original size:31 final size:31
Alignment explanation
Indices: 71007475--71007589 Score: 214
Period size: 31 Copynumber: 3.7 Consensus size: 31
71007465 TTAGTCTTGA
*
71007475 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
71007505 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
71007536 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
71007567 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
71007590 ACTGTAAACG
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
30 5 0.06
31 78 0.94
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Done.