Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 233 of 425
Found at i:71007658 original size:42 final size:42
Alignment explanation
Indices: 71007611--71007704 Score: 170
Period size: 42 Copynumber: 2.2 Consensus size: 42
71007601 TATGGCCCTT
*
71007611 AAGCCCATTTCAAGATCACATGTAATGTCAATGGATGTATGC
1 AAGCCCATTTCAAGATCACATGTAATGTCAATGAATGTATGC
*
71007653 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
1 AAGCCCATTTCAAGATCACATGTAATGTCAATGAATGTATGC
71007695 AAGCCCATTT
1 AAGCCCATTT
71007705 GGGGAGACTA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (42 bp):
AAGCCCATTTCAAGATCACATGTAATGTCAATGAATGTATGC
Found at i:71007866 original size:24 final size:24
Alignment explanation
Indices: 71007839--71007896 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
71007829 CTAGAGGCCT
*
71007839 AGCCTCTTTTAAT-ATCTAGGGCAA
1 AGCC-CTTTTAATAAACTAGGGCAA
*
71007863 AGCCCTTTCTGATAAACTAGGGCAA
1 AGCCCTTT-TAATAAACTAGGGCAA
71007888 AGCCCTTTT
1 AGCCCTTTT
71007897 CGGTAAATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 4 0.13
24 8 0.27
25 18 0.60
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTAGGGCAA
Found at i:71007903 original size:25 final size:26
Alignment explanation
Indices: 71007854--71007921 Score: 86
Period size: 25 Copynumber: 2.7 Consensus size: 26
71007844 CTTTTAATAT
71007854 CTAGGGCAAAGCCC-TTTCTGATAAA
1 CTAGGGCAAAGCCCTTTTCTGATAAA
*
71007879 CTAGGGCAAAGCCCTTTTC-GGTAAA
1 CTAGGGCAAAGCCCTTTTCTGATAAA
* * *
71007904 TTGGGGCAGAGCCCTTTT
1 CTAGGGCAAAGCCCTTTT
71007922 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 34 0.89
26 4 0.11
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (26 bp):
CTAGGGCAAAGCCCTTTTCTGATAAA
Found at i:71008761 original size:27 final size:27
Alignment explanation
Indices: 71008731--71008795 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
71008721 GGGCATATTC
*
71008731 GTCATTTTACCATACA-AGGGTATTACG
1 GTCATTTTACCATACAGAGGCT-TTACG
* *
71008758 GTCACTTTACCCTACAGAGGCTTTACG
1 GTCATTTTACCATACAGAGGCTTTACG
*
71008785 GTCTTTTTACC
1 GTCATTTTACC
71008796 TATTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 28 0.88
28 4 0.12
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGAGGCTTTACG
Found at i:71008968 original size:110 final size:108
Alignment explanation
Indices: 71008829--71009095 Score: 295
Period size: 108 Copynumber: 2.5 Consensus size: 108
71008819 CATCCTACAA
* * *** *
71008829 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACTAATGGTATTTCTA
1 GGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCACAAACTAATGGTATTTCGA
* * * *
71008894 TAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTATAAAT-TAG
66 TAA-TTTCACAAACT-AAGGGTATTTTGGTAATTTTA-AAATCTAG
* ** * *
71008939 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTCGA
1 GGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCACAAACTAATGGTATTTCGA
* *
71009004 TAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAATCTAG
66 TAATTTCACAAACTAAGGGTATTTTGGTAATTTTAAAATCTAG
** * *
71009047 GGGTATTTTGGTAATTCTATCCTA-CAGGGGTATCTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTCTA-CAAACCAAGGGTATTTCAGTAATTTCACAA
71009096 TTGAGGGTAA
Statistics
Matches: 131, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
107 3 0.02
108 61 0.47
109 10 0.08
110 57 0.44
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (108 bp):
GGGTATTTTGGTAATTCTACAAACCAAGGGTATTTCAGTAATTTCACAAACTAATGGTATTTCGA
TAATTTCACAAACTAAGGGTATTTTGGTAATTTTAAAATCTAG
Found at i:71008987 original size:27 final size:27
Alignment explanation
Indices: 71008827--71009062 Score: 172
Period size: 27 Copynumber: 8.7 Consensus size: 27
71008817 TTCATCCTAC
* * * **
71008827 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATT
** ** *
71008854 AAGGGTATTTCAGTAATTTTGTAAACT
1 AAGGGTATTTTGGTAATTTTACAAATT
* * * *
71008881 AATGGTATTTCT-ATAATTTTTAGAAAGTC
1 AAGGGTATTT-TGGTAA-TTTTACAAA-TT
* *
71008910 AAGGGTATTTTTGTAATTTTATAAATT
1 AAGGGTATTTTGGTAATTTTACAAATT
*
71008937 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATTTTACAAATT
* * *
71008964 AAGGGTATTTCGGTAATTTCACAAACT
1 AAGGGTATTTTGGTAATTTTACAAATT
* * * *
71008991 -AGTGGTATTTCGATAATTTCACAAACT
1 AAG-GGTATTTTGGTAATTTTACAAATT
*
71009018 AGGGGTATTTTGGTAATTTTAC-AATCT
1 AAGGGTATTTTGGTAATTTTACAAAT-T
*
71009045 AGGGGTATTTTGGTAATT
1 AAGGGTATTTTGGTAATT
71009063 CTATCCTACA
Statistics
Matches: 170, Mismatches: 32, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.02
27 137 0.81
28 17 0.10
29 12 0.07
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATT
Found at i:71008998 original size:54 final size:54
Alignment explanation
Indices: 71008829--71009062 Score: 200
Period size: 54 Copynumber: 4.3 Consensus size: 54
71008819 CATCCTACAA
* * * * ** *
71008829 GGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACTAG
* * * * ** * *
71008883 TGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTATAAATTAG
1 GGGTATTT-TGGTAA-TTTTACAAA-CCAAGGGTATTTCGGTAATTTTACAAACTAG
** *
71008939 GGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACTAG
* * * * * * * *
71008993 TGGTATTTCGATAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAATCTAG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACTAG
71009047 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
71009063 CTATCCTACA
Statistics
Matches: 143, Mismatches: 33, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
54 92 0.64
55 16 0.11
56 35 0.24
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACTAG
Found at i:71009079 original size:81 final size:81
Alignment explanation
Indices: 71008922--71009095 Score: 203
Period size: 81 Copynumber: 2.1 Consensus size: 81
71008912 GGGTATTTTT
* * *
71008922 GTAATTTTATAAATTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACA
1 GTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACA
* *
71008987 AACTAGTGGTATTTC-
66 AACTAGGGGTATCTCA
* *
71009002 GATAATTTCACAAACTAGGGGTATTTTGGTAATTTTAC-AATCTAGGGGTATTTTGGTAA-TTCT
1 G-TAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAAT-TAAGGGTATTTCGGTAATTTC-
**
71009065 ATCCTAC-AGGGGTATCTCA
63 A-CAAACTAGGGGTATCTCA
71009084 GTAATTTCACAA
1 GTAATTTCACAA
71009096 TTGAGGGTAA
Statistics
Matches: 80, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
80 7 0.09
81 69 0.86
82 4 0.05
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (81 bp):
GTAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACA
AACTAGGGGTATCTCA
Found at i:71009197 original size:27 final size:27
Alignment explanation
Indices: 71009098--71009210 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
71009088 TTTCACAATT
* * *
71009098 GAGGGTAAAACGGTAATTTTGTAAA-C
1 GAGGGTAAAATGGTAATTCTATAAATC
* * *
71009124 TGAAGGTAAAATGGTAATTTTGTAAATC
1 -GAGGGTAAAATGGTAATTCTATAAATC
* *
71009152 GAGTGTAAAAAGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
*
71009179 GAGGGTAAAATGGTAATTCTACAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
71009206 GAGGG
1 GAGGG
71009211 CATTTCAGTA
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
27 74 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTATAAATC
Found at i:71013187 original size:40 final size:40
Alignment explanation
Indices: 71013132--71013393 Score: 420
Period size: 40 Copynumber: 6.6 Consensus size: 40
71013122 TATTCGAATG
71013132 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
71013172 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
71013212 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
71013252 ATATCCGGTCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
71013292 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
71013332 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
71013372 ATATCC-AGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
71013394 TACTTGGGTT
Statistics
Matches: 206, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.06
40 192 0.93
41 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:71018168 original size:27 final size:27
Alignment explanation
Indices: 71018138--71018305 Score: 223
Period size: 27 Copynumber: 6.3 Consensus size: 27
71018128 ATCCATGTTT
* *
71018138 AAAATACCCTTGGTTTATAAAATTACC
1 AAAATACCCTTAGTTTGTAAAATTACC
*
71018165 AAAATACCC-TAGTTTGTAAAATTACT
1 AAAATACCCTTAGTTTGTAAAATTACC
* *
71018191 AAAATACCCTTGGTTTATAAAATTACC
1 AAAATACCCTTAGTTTGTAAAATTACC
*
71018218 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATACCCTTAGTTTGTAAAATTACC
*
71018245 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATACCCTTAGTTTGTAAAATTACC
* * *
71018272 AAAATACCC-TAATTTGTGAAATTACT
1 AAAATACCCTTAGTTTGTAAAATTACC
*
71018298 GAAATACC
1 AAAATACC
71018306 ACGACCTGTA
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 44 0.35
27 83 0.65
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATACCCTTAGTTTGTAAAATTACC
Found at i:71018253 original size:54 final size:53
Alignment explanation
Indices: 71018137--71018305 Score: 266
Period size: 53 Copynumber: 3.2 Consensus size: 53
71018127 TATCCATGTT
71018137 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTAC
1 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTAC
71018190 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
1 TAAAATACCCTTGGTTTATAAAATTACCAAAATA-CCCTAGTTTGTAAAATTAC
* * * * * *
71018244 CAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTAATTTGTGAAATTAC
1 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTAC
*
71018297 TGAAATACC
1 TAAAATACC
71018306 ACGACCTGTA
Statistics
Matches: 107, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 58 0.54
54 49 0.46
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (53 bp):
TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTAGTTTGTAAAATTAC
Found at i:71018345 original size:27 final size:27
Alignment explanation
Indices: 71018155--71018402 Score: 121
Period size: 27 Copynumber: 9.3 Consensus size: 27
71018145 CCTTGGTTTA
** * *
71018155 TAAAATTACCAAAATACCCTAG-TTTG
1 TAAAATTACTGAAATACCCTCGACTTG
* * ** *
71018181 TAAAATTACTAAAATACCCTTGGTTTA
1 TAAAATTACTGAAATACCCTCGACTTG
** * *
71018208 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACTGAAATACCCTCGA-CTTG
** * *
71018235 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACTGAAATACCCTCGA-CTTG
** * *
71018262 TAAAATTACCAAAATACCCT-AATTTG
1 TAAAATTACTGAAATACCCTCGACTTG
* * *
71018288 TGAAATTACTGAAATA-CCACGACCTG
1 TAAAATTACTGAAATACCCTCGACTTG
*
71018314 TAAAATTATTGAAATACCCTCGACTTG
1 TAAAATTACTGAAATACCCTCGACTTG
* * *
71018341 TAAAATTAC-CAAAGTACCCTCGATTTA
1 TAAAATTACTGAAA-TACCCTCGACTTG
* * *** *
71018368 TAGAATTACCGTTTTACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGACTTG
71018395 TAAAATTA
1 TAAAATTA
71018403 TCGTTTTACC
Statistics
Matches: 184, Mismatches: 31, Indels: 13
0.81 0.14 0.06
Matches are distributed among these distances:
25 2 0.01
26 57 0.31
27 125 0.68
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGACTTG
Found at i:71018386 original size:54 final size:53
Alignment explanation
Indices: 71018355--71018755 Score: 463
Period size: 54 Copynumber: 7.5 Consensus size: 53
71018345 ATTACCAAAG
*
71018355 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTA-AAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGA-TT-TACAAATTACCGTTT
**
71018409 TACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGA-TTTACA-AATTACCGTTT
*
71018463 TACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATTTACATAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTC-GATTTACA-AATTACCGTTT
* * * *
71018517 TACCC-CTGATTTA-CGTAATTATCATTTTACCCTCGACTTACAGAATTACCGTTT
1 TACCCTC-GATTTATAG-AATTACCGTTTTACCCTCGATTTACA-AATTACCGTTT
* * * * *
71018571 TACCCACAATTTACATAATTACCGTTTTACCC-CTGATTTACATAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTC-GATTTACA-AATTACCGTTT
* * *
71018625 TACCCTCGACTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACA-AATTACCGTTT
* * *
71018679 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAATTACCGTTT
* *
71018732 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTATAGAATTACCG
71018756 AAATACCCTC
Statistics
Matches: 299, Mismatches: 37, Indels: 23
0.83 0.10 0.06
Matches are distributed among these distances:
52 2 0.01
53 38 0.13
54 255 0.85
55 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.40
Consensus pattern (53 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAATTACCGTTT
Found at i:71018407 original size:27 final size:27
Alignment explanation
Indices: 71018328--71018781 Score: 387
Period size: 27 Copynumber: 16.9 Consensus size: 27
71018318 ATTATTGAAA
* * ****
71018328 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAAAATTACCGTTT
*
71018355 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
71018382 TACCCTCGATTTGTAAAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
*
71018409 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * **
71018436 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAAAATTACCGTTT
*
71018463 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * *
71018490 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTATAAAATTACCGTTT
*** * *
71018517 TACCC-CTGATTTACGTAATTATCATTT
1 TACCCTC-GATTTATAAAATTACCGTTT
* * *
71018544 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * * *
71018571 TACCCACAATTTACATAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * *
71018598 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAAAATTACCGTTT
* * *
71018625 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * *
71018652 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCGTTT
* *
71018679 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* * *
71018706 TACCCTTGATTTA-CAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGTTT
* ***
71018732 TACCCTCGATTTACAAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCGTTT
* *
71018759 TACCCTCAATTTGTAAAATTACC
1 TACCCTCGATTTATAAAATTACC
71018782 AAAATACCCC
Statistics
Matches: 363, Mismatches: 57, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
26 26 0.07
27 334 0.92
28 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGTTT
Found at i:71018786 original size:27 final size:27
Alignment explanation
Indices: 71018732--71018818 Score: 88
Period size: 27 Copynumber: 3.2 Consensus size: 27
71018722 ATTACTGTTT
* *
71018732 TACCCTCGATTTACAAAATTACCGAAA
1 TACCCTCAATTTACAAAATTACCAAAA
**
71018759 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* *
71018786 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-AATTTACAAAATTACCA-AAA
71018813 TACCCT
1 TACCCT
71018819 TGACTTTTTA
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.06
27 46 0.94
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:71018872 original size:27 final size:26
Alignment explanation
Indices: 71018825--71018880 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
71018815 CCCTTGACTT
*
71018825 TTTAAAAATTATAGAAGTACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
71018851 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
71018878 TTT
1 TTT
71018881 GTTGATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:71018998 original size:27 final size:27
Alignment explanation
Indices: 71018934--71018998 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
71018924 ATCCCTATTA
*
71018934 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
71018961 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
71018988 GGTAAAATGAC
1 GGTAAAATGAC
71018999 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:71020239 original size:20 final size:20
Alignment explanation
Indices: 71020214--71020272 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
71020204 TAAATATGGT
71020214 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
71020234 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
71020254 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
71020273 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:71020350 original size:24 final size:24
Alignment explanation
Indices: 71020323--71020465 Score: 200
Period size: 24 Copynumber: 6.0 Consensus size: 24
71020313 GAGGAAGTGA
*
71020323 AAAAGAGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
71020347 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
71020371 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
71020394 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
71020418 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
71020442 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
71020466 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 6, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
23 23 0.21
24 76 0.69
25 11 0.10
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:71020415 original size:47 final size:47
Alignment explanation
Indices: 71020323--71020465 Score: 198
Period size: 47 Copynumber: 3.0 Consensus size: 47
71020313 GAGGAAGTGA
*
71020323 AAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
71020371 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * *
71020418 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTAT
71020466 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
47 43 0.49
48 33 0.38
49 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:71020439 original size:71 final size:72
Alignment explanation
Indices: 71020323--71020466 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
71020313 GAGGAAGTGA
*
71020323 AAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-
1 AAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCT
71020386 CCAGTTAT
65 CCAGTTAT
* ** * *
71020394 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCTAGGCCTC
1 AAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
71020459 CAGTTAT
66 CAGTTAT
71020466 A
1 A
71020467 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 53 0.82
72 12 0.18
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (72 bp):
AAAAGAGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTC
CAGTTAT
Found at i:71020692 original size:31 final size:31
Alignment explanation
Indices: 71020657--71020751 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
71020647 CGTTTACAGT
71020657 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71020688 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
71020719 AAATGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71020750 AA
1 AA
71020752 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:71023164 original size:27 final size:27
Alignment explanation
Indices: 71023134--71023304 Score: 243
Period size: 27 Copynumber: 6.3 Consensus size: 27
71023124 ATCCATGTTT
* * *
71023134 AAAATACCCTTGGTTTATAAAATTACC
1 AAAATACCCCTAGTTTGTAAAATTACC
*
71023161 AAAATACCCCTAGTTTGTAAAATTACT
1 AAAATACCCCTAGTTTGTAAAATTACC
* * *
71023188 AAAATACCCTTGGTTTATAAAATTACC
1 AAAATACCCCTAGTTTGTAAAATTACC
71023215 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATACCCCTAGTTTGTAAAATTACC
71023242 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATACCCCTAGTTTGTAAAATTACC
* * *
71023269 AAAATACCCCTAATTTGTGAAATTACT
1 AAAATACCCCTAGTTTGTAAAATTACC
*
71023296 GAAATACCC
1 AAAATACCC
71023305 TCGACCTGTA
Statistics
Matches: 129, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 129 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATACCCCTAGTTTGTAAAATTACC
Found at i:71023215 original size:54 final size:54
Alignment explanation
Indices: 71023133--71023305 Score: 283
Period size: 54 Copynumber: 3.2 Consensus size: 54
71023123 TATCCATGTT
71023133 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
1 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
71023187 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
1 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
* * * * * *
71023241 CAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTAC
1 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
*
71023295 TGAAATACCCT
1 TAAAATACCCT
71023306 CGACCTGTAA
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 110 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (54 bp):
TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
Found at i:71023315 original size:54 final size:54
Alignment explanation
Indices: 71023133--71023374 Score: 254
Period size: 54 Copynumber: 4.5 Consensus size: 54
71023123 TATCCATGTT
* * *
71023133 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
1 TAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
* * *
71023187 TAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
1 TAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
* * * *
71023241 CAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTAC
1 TAAAATACCCTCGA-TTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
* ** *** * *
71023295 TGAAATACCCTCGACCTGTAAAATTATTGAAATA-CCCTCGACTTGTAAAATTAC
1 TAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAG-TTTGTAAAATTAC
* * * *
71023349 CAAAGTACCCTCGATTTATAGAATTA
1 TAAAATACCCTCGATTTGTAAAATTA
71023375 TCGTTTTACC
Statistics
Matches: 159, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
53 4 0.03
54 153 0.96
55 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TAAAATACCCTCGATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTAC
Found at i:71023373 original size:27 final size:27
Alignment explanation
Indices: 71023354--71023754 Score: 441
Period size: 27 Copynumber: 14.9 Consensus size: 27
71023344 ATTACCAAAG
*
71023354 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
71023381 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
71023408 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
71023435 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
71023462 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
71023489 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* * * * *
71023516 TACCCT-AATTTACATAATTATCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
71023542 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * * *
71023569 TACCCACAATTTACATAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
71023596 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* *
71023623 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
71023650 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
71023677 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
71023704 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
71023731 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTATAGAATTACCG
71023755 AAATACCCTC
Statistics
Matches: 329, Mismatches: 38, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
26 27 0.08
27 300 0.91
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:71023434 original size:54 final size:54
Alignment explanation
Indices: 71023327--71023780 Score: 439
Period size: 54 Copynumber: 8.4 Consensus size: 54
71023317 ATTATTGAAA
* * **** * *
71023327 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* *
71023381 TACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * ** *
71023435 TACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGA-TTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * * * * * *
71023489 TACCC-CTAATTTACATAATTACCGTTTTACCCT-AATTTACATAATTATCATTT
1 TACCCTC-GATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * * * * * *
71023542 TACCCTCGACTTACAGAATTACCGTTTTACCCACAATTTACATAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * * *
71023596 TACCC-CTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTT
1 TACCCTC-GATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * * *
71023650 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* * * * ***
71023704 TACCCTTGATTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
* *
71023758 TACCCTCAATTTGTAAAATTACC
1 TACCCTCGATTTATAAAATTACC
71023781 AAAATACCCC
Statistics
Matches: 342, Mismatches: 51, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
53 45 0.13
54 295 0.86
55 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:71023761 original size:27 final size:27
Alignment explanation
Indices: 71023138--71023817 Score: 221
Period size: 27 Copynumber: 25.2 Consensus size: 27
71023128 ATGTTTAAAA
* * * *
71023138 TACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCGAAT
* * ** *
71023165 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTCGA-TTTATAAAATTACCGAAT
* * * *
71023192 TACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCGAAT
* * * *
71023219 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCGAAT
* * * *
71023246 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCGAAT
* * * * *
71023273 TACCC-CTAATTTGTGAAATTACTGAAA
1 TACCCTC-GATTTATAAAATTACCGAAT
** * ** *
71023300 TACCCTCGACCTGTAAAATTATTGAAA
1 TACCCTCGATTTATAAAATTACCGAAT
* * * *
71023327 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAAAATTACCGAAT
* * **
71023354 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGAAT
* **
71023381 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGAAT
* **
71023408 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGAAT
* * * *
71023435 TACCCTC-AGTTTACAGAATTA-CTATTT
1 TACCCTCGA-TTTATAAAATTACCGA-AT
* **
71023462 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGAAT
* * * **
71023489 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTATAAAATTACCGAAT
* * * * *
71023516 TACCCT-AATTTACATAATTATC-ATTT
1 TACCCTCGATTTATAAAATTACCGA-AT
* * * **
71023542 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGAAT
* * * * * **
71023569 TACCCACAATTTACATAATTATCGTTT
1 TACCCTCGATTTATAAAATTACCGAAT
* * * **
71023596 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAAAATTACCGAAT
* * * **
71023623 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGAAT
* * **
71023650 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCGAAT
* * **
71023677 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGAAT
* * * **
71023704 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTATAAAATTACCGAAT
* *
71023731 TACCCTCGATTTACAAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCGAAT
* * * *
71023758 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCGAAT
* * * *
71023785 TACCC-CTGATTTACAAAGTTACAGAAA
1 TACCCTC-GATTTATAAAATTACCGAAT
71023812 TACCCT
1 TACCCT
71023818 TGACTTTTTA
Statistics
Matches: 548, Mismatches: 87, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
26 28 0.05
27 515 0.94
28 5 0.01
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCGAAT
Found at i:71023764 original size:81 final size:81
Alignment explanation
Indices: 71023354--71023754 Score: 490
Period size: 81 Copynumber: 5.0 Consensus size: 81
71023344 ATTACCAAAG
* ** *
71023354 TACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* *
71023419 TATAGAATTACCGTTT
66 TACAAAATTACCGTTT
* * *
71023435 TACCCTC-AGTTTACAGAATTA-CTATTTTACCCTCGATTTATAGAATTACCGTTTTACCC-CTA
1 TACCCTCGA-TTTACAGAATTATC-GTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-G
*
71023497 ATTTACATAATTACCGTTT
63 ATTTACAAAATTACCGTTT
* * * * * *
71023516 TACCCT-AATTTACATAATTATCATTTTACCCTCGACTTACAGAATTACCGTTTTACCCACAATT
1 TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* *
71023580 TACATAATTATCGTTT
66 TACAAAATTACCGTTT
* *
71023596 TACCC-CTGATTTACATAATTATCGTTTTACCCTCGACTTACAGAATTACCGTTTTACCCTCGAT
1 TACCCTC-GATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGAT
*
71023660 TTACAGAATTACCGTTT
65 TTACAAAATTACCGTTT
* * * *
71023677 TACCCTCGATTTATAGAATTA-CTGTTTTACCCTTGATTTACAAAATTACTGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTATC-GTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGAT
71023741 TTACAAAATTACCG
65 TTACAAAATTACCG
71023755 AAATACCCTC
Statistics
Matches: 286, Mismatches: 24, Indels: 20
0.87 0.07 0.06
Matches are distributed among these distances:
80 73 0.26
81 212 0.74
82 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAAAATTACCGTTT
Found at i:71023871 original size:27 final size:26
Alignment explanation
Indices: 71023824--71023879 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
71023814 CCCTTGACTT
*
71023824 TTTAAAAATTATAGAAGTACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
71023850 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
71023877 TTT
1 TTT
71023880 GTTGATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:71023997 original size:27 final size:27
Alignment explanation
Indices: 71023933--71023997 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
71023923 ATCCCTATTA
*
71023933 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
71023960 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
71023987 GGTAAAATGAC
1 GGTAAAATGAC
71023998 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:71024655 original size:14 final size:14
Alignment explanation
Indices: 71024622--71024663 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
71024612 GTGGTTGATT
*
71024622 ATAGGAGAAATCGC
1 ATAGGAGATATCGC
71024636 ATAGGAGATATCGTC
1 ATAGGAGATATCG-C
71024651 A-AGGA-ATATCGC
1 ATAGGAGATATCGC
71024663 A
1 A
71024664 AATCAGGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 2 0.08
13 6 0.23
14 16 0.62
15 2 0.08
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.19
Consensus pattern (14 bp):
ATAGGAGATATCGC
Found at i:71025182 original size:25 final size:25
Alignment explanation
Indices: 71025153--71025200 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
71025143 TTATAATATG
* * *
71025153 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
71025178 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
71025201 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:71025269 original size:20 final size:20
Alignment explanation
Indices: 71025244--71025302 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
71025234 TAAATATGGT
71025244 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
71025264 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
71025284 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
71025303 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:71025380 original size:24 final size:24
Alignment explanation
Indices: 71025353--71025519 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
71025343 GAGGAAGTGA
71025353 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
71025377 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
71025401 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
71025425 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
71025448 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
71025472 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
71025496 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
71025520 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
23 23 0.17
24 101 0.75
25 11 0.08
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:71025470 original size:71 final size:71
Alignment explanation
Indices: 71025353--71025520 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
71025343 GAGGAAGTGA
71025353 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
71025418 AGTTATC
65 AGTTATC
** *
71025425 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
*
71025490 GTTATT
66 GTTATC
*
71025496 AAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAG-GGCTTATGCC-CCAGTTATA
71025521 TGATAAAGCA
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 54 0.61
72 35 0.39
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
GTTATC
Found at i:71025746 original size:31 final size:31
Alignment explanation
Indices: 71025711--71025805 Score: 172
Period size: 31 Copynumber: 3.1 Consensus size: 31
71025701 CGTTTACAGT
71025711 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71025742 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* *
71025773 AAATGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71025804 AA
1 AA
71025806 TATGAAAAGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:71027908 original size:37 final size:37
Alignment explanation
Indices: 71027853--71027992 Score: 235
Period size: 37 Copynumber: 3.8 Consensus size: 37
71027843 CGAATAGTCC
* * *
71027853 CCACTCGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
71027890 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
71027927 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
* *
71027964 CCACACATAGTCATCGGGTCTTACTCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
71027993 ATATATTTCC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:71028191 original size:48 final size:48
Alignment explanation
Indices: 71028133--71028518 Score: 664
Period size: 48 Copynumber: 8.0 Consensus size: 48
71028123 ATATGCACAC
* * * *
71028133 ATCTCCTACATATTTCAGATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
71028181 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
71028229 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
71028277 ATCTCATATATATTTCACATTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
71028325 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
71028373 ATCTCATACATATTTCACACTAGCCATTCCGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
71028421 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
71028469 ATCTCATATATATTTCACACTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
71028517 AT
1 AT
71028519 ATATATATGT
Statistics
Matches: 321, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 321 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:71031269 original size:40 final size:39
Alignment explanation
Indices: 71031224--71031371 Score: 154
Period size: 40 Copynumber: 3.7 Consensus size: 39
71031214 ATAACCACAA
* * *** *
71031224 GCACAATTGCCTTCGGGTCTTAACCCGGATTTGGTAACTT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTC
71031264 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
* *
71031304 ACACGAATGCCTTCGGGTCTTAGCCCGGATATAATC-ACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAA-CAACTC
* *
71031344 GCATAAATGCCTTCGGGACTTAGCCCGG
1 GCA-CAATGCCTTCGGGTCTTAGCCCGG
71031372 TATCATTCAA
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
40 90 0.97
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
Found at i:71038746 original size:40 final size:39
Alignment explanation
Indices: 71038689--71038873 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
71038679 ATTAAATGAT
* * *
71038689 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
71038729 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
71038769 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
71038809 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
71038849 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
71038874 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:71038825 original size:80 final size:80
Alignment explanation
Indices: 71038688--71038894 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
71038678 AATTAAATGA
* * ** * *
71038688 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
71038753 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
71038766 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
71038831 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
71038848 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
71038895 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:71038879 original size:40 final size:39
Alignment explanation
Indices: 71038687--71038894 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
71038677 CAATTAAATG
* * ** *
71038687 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
71038727 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
71038767 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
71038807 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
71038847 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
71038887 ATATCCGG
1 ATATCCGG
71038895 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:71047219 original size:93 final size:93
Alignment explanation
Indices: 71047107--71047278 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
71047097 CGCCCATAAG
*
71047107 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
71047171 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
71047200 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71047265 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
71047279 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:71047273 original size:46 final size:46
Alignment explanation
Indices: 71047100--71047275 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
71047090 TGTAACCCGC
* *
71047100 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
71047146 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
71047196 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
71047239 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
71047276 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:71060152 original size:40 final size:40
Alignment explanation
Indices: 71060093--71060178 Score: 136
Period size: 40 Copynumber: 2.1 Consensus size: 40
71060083 CGGAATACAA
*
71060093 CCGGATATAACCACATGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATAGAACCACATGCACGAATGCCCTCGGGTCTTAGC
* * *
71060133 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATAGAACCACATGCACGAATGCCCTCGGGTCTTAGC
71060173 CCGGAT
1 CCGGAT
71060179 GTAGTCACTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (40 bp):
CCGGATAGAACCACATGCACGAATGCCCTCGGGTCTTAGC
Found at i:71060200 original size:40 final size:41
Alignment explanation
Indices: 71060109--71060218 Score: 129
Period size: 40 Copynumber: 2.7 Consensus size: 41
71060099 ATAACCACAT
* *
71060109 GCACGAATGCCCTCGGGTCTTAGCCCGGA-TAGAACGACTT
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
*
71060149 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTA
* *
71060189 GCAC-AATTGCCTTTGGGTCTTAACCCGGAT
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT
71060219 ATAATTTCCA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
39 2 0.03
40 56 0.90
41 1 0.02
42 3 0.05
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (41 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
Found at i:71064570 original size:27 final size:27
Alignment explanation
Indices: 71064536--71064841 Score: 211
Period size: 27 Copynumber: 11.4 Consensus size: 27
71064526 TTACCCTACA
*
71064536 GGGG-TATTTTTGTAATTTTACAAACT
1 GGGGATATTTTAGTAATTTTACAAACT
*
71064562 GGGGATATTTCAGTAATTTTTA-AAACT
1 GGGGATATTTTAGTAA-TTTTACAAACT
* * *
71064589 -GAGAGTA-TTTCGATAATTTTACAAACCA
1 GGGGA-TATTTTAG-TAATTTTACAAA-CT
** * *
71064617 AAGG-TA-TTTCGATAATTTTACAAACA
1 GGGGATATTTTAG-TAATTTTACAAACT
* * *
71064643 GGGGGTATTTTAGTATTTTTACAAACC
1 GGGGATATTTTAGTAATTTTACAAACT
** **
71064670 AAGGATATTTCGGTAATTTTACAAACT
1 GGGGATATTTTAGTAATTTTACAAACT
* *
71064697 GGGGGTATTTTACTAATTTTACAAA-T
1 GGGGATATTTTAGTAATTTTACAAACT
*
71064723 CGAGGG-TATTTTGGTAATTTTACAAA-T
1 -G-GGGATATTTTAGTAATTTTACAAACT
** *
71064750 TAGGAGTATTTTAGTAATTTTACAAACAA
1 GGGGA-TATTTTAGTAATTTTACAAAC-T
*
71064779 GGGGA-ATTTTAGTAATTTTATAAACT
1 GGGGATATTTTAGTAATTTTACAAACT
* *
71064805 GAGGG-TATTTTGGTAATTTTACAAACC
1 G-GGGATATTTTAGTAATTTTACAAACT
*
71064832 GGGGGTATTT
1 GGGGATATTT
71064842 CAGTTGTAAC
Statistics
Matches: 223, Mismatches: 39, Indels: 35
0.75 0.13 0.12
Matches are distributed among these distances:
25 2 0.01
26 24 0.11
27 180 0.81
28 13 0.06
29 4 0.02
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (27 bp):
GGGGATATTTTAGTAATTTTACAAACT
Found at i:71064597 original size:54 final size:54
Alignment explanation
Indices: 71064537--71064845 Score: 285
Period size: 54 Copynumber: 5.7 Consensus size: 54
71064527 TACCCTACAG
* *
71064537 GGGTATTTTTGTAATTTTACAAACTGGGGATATTTCAGTAATTTTTA-AAACTGA
1 GGGTATTTTAGTAATTTTACAAACAGGGGATATTTCAGTAA-TTTTACAAACTGA
* * ** * *
71064591 GAGTA-TTTCGATAATTTTACAAACCAAAGG-TATTTC-GATAATTTTACAAACAGG
1 GGGTATTTTAG-TAATTTTACAAA-CAGGGGATATTTCAG-TAATTTTACAAACTGA
* * * *
71064645 GGGTATTTTAGTATTTTTACAAACCA-AGGATATTTCGGTAATTTTACAAACTGG
1 GGGTATTTTAGTAATTTTACAAA-CAGGGGATATTTCAGTAATTTTACAAACTGA
* ** *
71064699 GGGTATTTTACTAATTTTACAAATC-GAGGG-TATTTTGGTAATTTTACAAA-TTA
1 GGGTATTTTAGTAATTTTACAAA-CAG-GGGATATTTCAGTAATTTTACAAACTGA
* *
71064752 GGAGTATTTTAGTAATTTTACAAACAAGGGGA-ATTTTAGTAATTTTATAAACTGA
1 GG-GTATTTTAGTAATTTTACAAAC-AGGGGATATTTCAGTAATTTTACAAACTGA
* * *
71064807 GGGTATTTTGGTAATTTTACAAACCGGGGGTATTTCAGT
1 GGGTATTTTAGTAATTTTACAAACAGGGGATATTTCAGT
71064846 TGTAACGCCC
Statistics
Matches: 214, Mismatches: 26, Indels: 30
0.79 0.10 0.11
Matches are distributed among these distances:
53 21 0.10
54 178 0.83
55 15 0.07
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (54 bp):
GGGTATTTTAGTAATTTTACAAACAGGGGATATTTCAGTAATTTTACAAACTGA
Found at i:71064704 original size:81 final size:82
Alignment explanation
Indices: 71064535--71064831 Score: 295
Period size: 81 Copynumber: 3.7 Consensus size: 82
71064525 TTTACCCTAC
** * **
71064535 AGGGGTATTTTTGTAATTTTACAAACTG-GGGATATTTCAGTAATTTTTA-AAACTGA-GAGTAT
1 AGGGGTATTTTACTAATTTTACAAACTGAGGG-TATTTTAGTAA-TTTTACAAACCAAGGAGTAT
*
71064597 TTCGATAATTTTACAAACCA
64 TTCGGTAATTTTACAAA-CA
* * * * *
71064617 A-AGGTATTTCGA-TAATTTTACAAACAGGGGGTATTTTAGTATTTTTACAAACCAAGGA-TATT
1 AGGGGTATTT-TACTAATTTTACAAACTGAGGGTATTTTAGTAATTTTACAAACCAAGGAGTATT
*
71064679 TCGGTAATTTTACAAACT
65 TCGGTAATTTTACAAACA
* * **
71064697 GGGGGTATTTTACTAATTTTACAAA-TCGAGGGTATTTTGGTAATTTTACAAA-TTAGGAGTATT
1 AGGGGTATTTTACTAATTTTACAAACT-GAGGGTATTTTAGTAATTTTACAAACCAAGGAGTATT
**
71064760 TTAGTAATTTTACAAACA
65 TCGGTAATTTTACAAACA
* * * *
71064778 AGGGGAATTTTAGTAATTTTATAAACTGAGGGTATTTTGGTAATTTTACAAACC
1 AGGGGTATTTTACTAATTTTACAAACTGAGGGTATTTTAGTAATTTTACAAACC
71064832 GGGGGTATTT
Statistics
Matches: 178, Mismatches: 27, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
80 11 0.06
81 160 0.90
82 7 0.04
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (82 bp):
AGGGGTATTTTACTAATTTTACAAACTGAGGGTATTTTAGTAATTTTACAAACCAAGGAGTATTT
CGGTAATTTTACAAACA
Found at i:71071185 original size:40 final size:40
Alignment explanation
Indices: 71071100--71071246 Score: 141
Period size: 40 Copynumber: 3.6 Consensus size: 40
71071090 GGATATAGCG
* * * * *
71071100 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAAAGCCTTCGGGACTTAACCCGGTTTTAGTA
* * * *
71071140 GCTCGCACAAATGCCTTCGGGACTTAACCCAGTTTTGGTA
1 ACTCGCACAAAAGCCTTCGGGACTTAACCCGGTTTTAGTA
* * ** * *
71071180 ACTCGCACAAATGCCTTCGGGAATTGTCCCGGATTTAGTC
1 ACTCGCACAAAAGCCTTCGGGACTTAACCCGGTTTTAGTA
*
71071220 ACTTAGCACAAAAGCCTTCGGGACTTA
1 AC-TCGCACAAAAGCCTTCGGGACTTA
71071247 GCCTGGATAC
Statistics
Matches: 85, Mismatches: 21, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
40 65 0.76
41 20 0.24
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAAAGCCTTCGGGACTTAACCCGGTTTTAGTA
Found at i:71079208 original size:40 final size:38
Alignment explanation
Indices: 71079163--71079315 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 38
71079153 GGATATAGCG
* *
71079163 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAAT
1 ACTCGCACAAAAGCCTTCGGGACATAGCCCGGTT-TAGT
* * * *
71079202 AGCTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGT
1 A-CTCGCACAAAAGCCTTCGGGACATAGCCCGG-TTTAGT
* *
71079242 AACTCGCACAAATGCCTTCGGGA-ATTGTCCCGGATTTAGT
1 -ACTCGCACAAAAGCCTTCGGGACATAG-CCCGG-TTTAGT
* *
71079282 CACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 -AC-TCGCACAAAAGCCTTCGGGACATAGCCCGG
71079316 ATACCATTCG
Statistics
Matches: 92, Mismatches: 16, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
39 2 0.02
40 62 0.67
41 26 0.28
42 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAAAGCCTTCGGGACATAGCCCGGTTTAGT
Found at i:71084696 original size:2 final size:2
Alignment explanation
Indices: 71084689--71084717 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
71084679 ACATACATGG
71084689 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
71084718 AAACTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:71093017 original size:35 final size:35
Alignment explanation
Indices: 71092971--71093042 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
71092961 TTTACCATTA
71092971 GAGTTAGAAAAGATTCACAATGTGTTTCATGTGTC
1 GAGTTAGAAAAGATTCACAATGTGTTTCATGTGTC
71093006 GAGTTAGAAAAGATTCACAATGTGTTTCATGTGTC
1 GAGTTAGAAAAGATTCACAATGTGTTTCATGTGTC
71093041 GA
1 GA
71093043 TACTATTCCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (35 bp):
GAGTTAGAAAAGATTCACAATGTGTTTCATGTGTC
Found at i:71096082 original size:16 final size:15
Alignment explanation
Indices: 71096058--71096087 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
71096048 AACTGTTTTA
71096058 TTACAAATTTCACTC
1 TTACAAATTTCACTC
71096073 TTACATAATTTCACT
1 TTACA-AATTTCACT
71096088 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:71096352 original size:49 final size:49
Alignment explanation
Indices: 71096287--71096530 Score: 204
Period size: 49 Copynumber: 4.9 Consensus size: 49
71096277 AACCAAAGCT
* *
71096287 ATCTAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACA
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAACA
* * * * *
71096336 ATCTAGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGATCGAA-G
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAACA
* * * * *
71096385 TTGTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACT
1 AT-CT-AGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-AACA
* ** * * *
71096437 ATCTGGTACATGTAGTAGCTTGCACTTAGTACTACACACGTGACCTACAACC
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-C--CAACA
* * * *
71096489 ATCTTA-AAAACATAGTAGCCTACACATAGTACTACACATGTG
1 ATC-TAGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
71096531 TTCTCACAAT
Statistics
Matches: 153, Mismatches: 33, Indels: 15
0.76 0.16 0.07
Matches are distributed among these distances:
49 39 0.25
50 39 0.25
51 38 0.25
52 35 0.23
53 2 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (49 bp):
ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAACA
Found at i:71096416 original size:51 final size:48
Alignment explanation
Indices: 71096292--71096481 Score: 182
Period size: 50 Copynumber: 3.8 Consensus size: 48
71096282 AAGCTATCTA
* * * * *
71096292 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAA-ATTCTG
* * * * *
71096341 GTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGATCGAAGTTGTTGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAAATT-CT-G
* * *
71096392 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAAT-TCTG
** *
71096442 GTACATGTAGTAGCTTGCACTTAGTACTACACACGTGACC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC
71096482 TACAACCATC
Statistics
Matches: 114, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
49 34 0.30
50 41 0.36
51 38 0.33
52 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAATTCTG
Found at i:71096461 original size:50 final size:50
Alignment explanation
Indices: 71096285--71096483 Score: 213
Period size: 49 Copynumber: 4.0 Consensus size: 50
71096275 GTAACCAAAG
* * * * *
71096285 CTATCTAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* * * * *
71096334 CAATCTAGTACACGTAGTAGCCTGCAGTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* * * * *
71096384 GT-TGTTGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
1 CTAT-CT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* *
71096435 CTATCTGGTACATGTAGTAGCTTGCACTTAGTACTACACACGTGACCTA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTA
71096484 CAACCATCTT
Statistics
Matches: 122, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
49 41 0.34
50 41 0.34
51 39 0.32
52 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (50 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
Found at i:71096524 original size:52 final size:50
Alignment explanation
Indices: 71096297--71096526 Score: 151
Period size: 50 Copynumber: 4.6 Consensus size: 50
71096287 ATCTAGTACG
* * * * *
71096297 CATAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCT-AGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGA-AAAA
* * * * ** * ** **
71096346 CGTAGTAGCCTGCAGTTAGTACTACACACGTGATCGAA-GTTGTTGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-CT-GAAAAA
* * ** *
71096397 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGAAAAA
** * *
71096447 TGTAGTAGCTTGCACTTAGTACTACACACGTGACCTACAACCATCTTAAAAA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATCTGAAAAA
* *
71096499 CATAGTAGCCTACACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
71096527 TGTGTTCTCA
Statistics
Matches: 141, Mismatches: 33, Indels: 11
0.76 0.18 0.06
Matches are distributed among these distances:
49 31 0.22
50 40 0.28
51 37 0.26
52 33 0.23
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGAAAAA
Found at i:71100563 original size:39 final size:39
Alignment explanation
Indices: 71100516--71100698 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
71100506 AATGTTCGAG
71100516 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
71100555 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
71100594 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
71100633 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
71100673 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
71100699 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:71102516 original size:15 final size:15
Alignment explanation
Indices: 71102460--71102519 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
71102450 TATAGATAAC
* * *
71102460 AAGAAAACCAGGATT
1 AAGAAATCCAAGATA
* *
71102475 AAGAAGTCCAAAATA
1 AAGAAATCCAAGATA
*
71102490 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
71102505 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
71102520 CAATATCATA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.57, C:0.13, G:0.17, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:71108545 original size:61 final size:61
Alignment explanation
Indices: 71108396--71108517 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
71108386 GTTTTCAGTT
* * * *
71108396 GCAATGTGCAAATATGACTCAAGTAAATGATGTTTCCATCACTAAGCTCTTATGAAGTTAC
1 GCAATGTGAAAATAAGACTCAGGTAAATGATGTTTCCATCACTAAGCTCTTATGAACTTAC
71108457 GCAATGTGAAAATAAGACTCAGGTAAATGATGTTTCCATCACTAAGCTCTTATGAACTTAC
1 GCAATGTGAAAATAAGACTCAGGTAAATGATGTTTCCATCACTAAGCTCTTATGAACTTAC
71108518 TTGTGTATGT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.30
Consensus pattern (61 bp):
GCAATGTGAAAATAAGACTCAGGTAAATGATGTTTCCATCACTAAGCTCTTATGAACTTAC
Found at i:71114527 original size:45 final size:45
Alignment explanation
Indices: 71114451--71114541 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
71114441 TTGTAATCAC
* * *
71114451 ATATCAATGCCAACGTCCCAGGCGTGCTCTTACATGAAAACACAT
1 ATATCAATGCCAACATCCCAGACGTGCTCTTACACGAAAACACAT
* * * *
71114496 ATATCGATGCTAACATCCCAGATGTGGTCTTACACGAAAACACAT
1 ATATCAATGCCAACATCCCAGACGTGCTCTTACACGAAAACACAT
71114541 A
1 A
71114542 GCATAATCCT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.23
Consensus pattern (45 bp):
ATATCAATGCCAACATCCCAGACGTGCTCTTACACGAAAACACAT
Found at i:71115112 original size:15 final size:15
Alignment explanation
Indices: 71115088--71115119 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
71115078 ATCAAAAATT
71115088 TCAATACAAAACATA
1 TCAATACAAAACATA
*
71115103 TCAATCCAAAACATA
1 TCAATACAAAACATA
71115118 TC
1 TC
71115120 TTTCATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (15 bp):
TCAATACAAAACATA
Found at i:71117615 original size:93 final size:92
Alignment explanation
Indices: 71117508--71117679 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 92
71117498 GCCCATAAGT
**
71117508 GAACTCGGACTCAACTCAACAAGAGTAC-ATGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTC-A-AAGAGTACGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71117572 ACAAGCTCGGATGCCTAGTTACATCTCTC
64 ACAAGCTCGGATGCCTAGTTACATCTCTC
* * *
71117601 GAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCTATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAAAGAGTAC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
71117666 CGAGTTCGGATGCC
65 CAAGCTCGGATGCC
71117680 CAAATATCCT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
91 6 0.09
92 1 0.01
93 63 0.90
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAAAGAGTACGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
AAGCTCGGATGCCTAGTTACATCTCTC
Found at i:71117671 original size:46 final size:46
Alignment explanation
Indices: 71117502--71117675 Score: 153
Period size: 46 Copynumber: 3.8 Consensus size: 46
71117492 TAACCCGCCC
* ** *
71117502 ATAAGTGAACTCGGACTCAACTCAACAAGAGTAC--ATGTTCGCATCC
1 ATAAGTGAACTCGGACTCAACTCAAC--GAGTTCGGACATTCGCATCT
* * *
71117548 ATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCT
* * *
71117598 CT---CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCT
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCT
71117641 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
71117676 TGCCCAAATA
Statistics
Matches: 101, Mismatches: 16, Indels: 22
0.73 0.12 0.16
Matches are distributed among these distances:
42 2 0.02
43 7 0.07
44 4 0.04
46 55 0.54
47 26 0.26
50 5 0.05
51 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (46 bp):
ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCT
Found at i:71117694 original size:46 final size:46
Alignment explanation
Indices: 71117551--71117694 Score: 116
Period size: 46 Copynumber: 3.1 Consensus size: 46
71117541 CGCATCCATA
* * * *
71117551 AGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATC-CT
* * * * * *
71117600 --CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCTAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATATATCCT
*
71117644 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCT
71117690 AGTGA
1 AGTGA
71117695 CATGTCACCT
Statistics
Matches: 72, Mismatches: 17, Indels: 15
0.69 0.16 0.14
Matches are distributed among these distances:
44 8 0.11
46 32 0.44
47 28 0.39
49 4 0.06
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCT
Found at i:71123167 original size:93 final size:90
Alignment explanation
Indices: 71123011--71123179 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 90
71123001 GCCCATAAGT
71123011 GAACTCGGACTCAACTCAACGAGCTCGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
1 GAACTCGGACTCAACTCAACGAGCTCGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
71123076 GCTCGGATGCCTAGTTACATCTCTC
66 GCTCGGATGCCTAGTTACATCTCTC
*
71123101 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG---TTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71123166 CGAGTTCGGATGCC
63 CGAGCTCGGATGCC
71123180 CAAATATCCT
Statistics
Matches: 74, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
90 27 0.36
93 47 0.64
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (90 bp):
GAACTCGGACTCAACTCAACGAGCTCGGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACGA
GCTCGGATGCCTAGTTACATCTCTC
Found at i:71123194 original size:46 final size:44
Alignment explanation
Indices: 71123003--71123181 Score: 207
Period size: 43 Copynumber: 4.0 Consensus size: 44
71122993 TGTAACCCGC
* *
71123003 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAT
*
71123046 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--T
* *** * * *
71123092 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG--ATGCCCAT
*
71123139 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA
71123182 AATATCCTAG
Statistics
Matches: 113, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
43 36 0.32
44 8 0.07
46 33 0.29
47 32 0.28
49 4 0.04
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAT
Found at i:71128602 original size:46 final size:46
Alignment explanation
Indices: 71128535--71128712 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
71128525 TGTAACCCGC
71128535 CCATAAGTGAACTCGGACTCAACTCAACGAGCGTC-GATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGC-TCGGATGTTCGCAT
* * *
71128581 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * **
71128627 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
*
71128674 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
71128713 CCCCAAATAT
Statistics
Matches: 109, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
45 2 0.02
46 72 0.66
47 35 0.32
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:71128655 original size:93 final size:93
Alignment explanation
Indices: 71128543--71128714 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
71128533 GCCCATAAGT
**
71128543 GAACTCGGACTCAACTCAACGAGCGTC-GATGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-GTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71128607 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
71128636 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGGTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71128701 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
71128715 CCAAATATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGGTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:71133013 original size:28 final size:29
Alignment explanation
Indices: 71132981--71133079 Score: 123
Period size: 28 Copynumber: 3.5 Consensus size: 29
71132971 ATAATAAGCC
*
71132981 CGCACACTTAGTGCTTA-ATAGTCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
71133009 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* ** *
71133037 CGCACACTTAGTGC-TATACAATTTGAACC
1 CGCACACTTAGTGCTTATATAA-TCAAACT
71133066 CGCACACTTAGTGC
1 CGCACACTTAGTGC
71133080 CAATTCATGA
Statistics
Matches: 64, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 2 0.03
28 44 0.69
29 18 0.28
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:71139156 original size:40 final size:40
Alignment explanation
Indices: 71139098--71139292 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
71139088 GGATATAGCG
* * * *
71139098 ACTCACTCGATTGTCTTCGGGACGTAGCCC-GATTATAGTG
1 ACTCACACAATTGCCTTCGGGACGTAGCCCGGATT-TAGTA
* **
71139138 ATTCACACAATTGCCTTCGGGAATTAGCCCGGATTTAGTA
1 ACTCACACAATTGCCTTCGGGACGTAGCCCGGATTTAGTA
* * * * * *
71139178 ACTCGCACAATTGCCTTTGGGACTTAACCCGGTTTTGGTA
1 ACTCACACAATTGCCTTCGGGACGTAGCCCGGATTTAGTA
* * * * *
71139218 ACTCGCACAAATGCCTTCGGGA-ATTGACCCGGATTTAGTC
1 ACTCACACAATTGCCTTCGGGACGTAG-CCCGGATTTAGTA
* ** *
71139258 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 ACTCA-CACAATTGCCTTCGGGACGTAGCCCGGAT
71139293 ACCATTCGAA
Statistics
Matches: 124, Mismatches: 27, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 94 0.76
41 27 0.22
42 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
ACTCACACAATTGCCTTCGGGACGTAGCCCGGATTTAGTA
Found at i:71139275 original size:41 final size:39
Alignment explanation
Indices: 71139143--71139292 Score: 165
Period size: 40 Copynumber: 3.7 Consensus size: 39
71139133 TAGTGATTCA
*
71139143 CACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCG
1 CACAAATGCCTTCGGGAATTA-CCCGGATTTAGTAACTCG
* * * * *
71139183 CACAATTGCCTTTGGGACTTAACCCGGTTTTGGTAACTCG
1 CACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAACTCG
* *
71139223 CACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAG
1 CACAAATGCCTTCGGGAATT-ACCCGGATTTAGTAAC-TCG
* *
71139264 CACAAAAGCCTTCGGGACTTAGCCCGGAT
1 CACAAATGCCTTCGGGAATTA-CCCGGAT
71139293 ACCATTCGAA
Statistics
Matches: 93, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
40 65 0.70
41 28 0.30
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CACAAATGCCTTCGGGAATTACCCGGATTTAGTAACTCG
Found at i:71162487 original size:40 final size:41
Alignment explanation
Indices: 71162403--71162511 Score: 134
Period size: 40 Copynumber: 2.7 Consensus size: 41
71162393 TTCGAATGAT
*
71162403 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAA
* * **
71162443 ATCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTCCCAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCAA
*
71162483 ATCCGGGTTAAGTCCCGAAGGCATTTGTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTG
71162512 TGAGCTATTA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 1 0.02
40 50 0.85
41 8 0.14
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAA
Found at i:71165565 original size:17 final size:18
Alignment explanation
Indices: 71165533--71165566 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
71165523 ACATGTGAAC
71165533 TTTTCAAACTTATAAAAA
1 TTTTCAAACTTATAAAAA
*
71165551 TTTTC-AACTTTTAAAA
1 TTTTCAAACTTATAAAA
71165567 GGTCACACAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (18 bp):
TTTTCAAACTTATAAAAA
Found at i:71173011 original size:38 final size:38
Alignment explanation
Indices: 71172967--71173039 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
71172957 ATGTTTTTCT
*
71172967 AGCCAAGGACGGTCCAAATGATGATTATTTTATGTTCC
1 AGCCAAGGACGGTCCAAATGATGATTATTTAATGTTCC
*
71173005 AGCCAAGGATGGTCCAAATGATGATTATTTAATGT
1 AGCCAAGGACGGTCCAAATGATGATTATTTAATGT
71173040 ACTTTATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (38 bp):
AGCCAAGGACGGTCCAAATGATGATTATTTAATGTTCC
Found at i:71181033 original size:53 final size:52
Alignment explanation
Indices: 71180933--71181133 Score: 226
Period size: 47 Copynumber: 4.1 Consensus size: 52
71180923 TTAGGATTTT
* * *
71180933 ATGTGATGAATGTGAACCCGTATATATATGTGTTG-TAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACCTGTATATATATATGGTGATAAGGCCGAATGGCCA
71180984 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACCTGTATATATATATG-GTGATAAGGCCGAATGGCCA
*** *
71181037 ATGTGATGAATGTGAA-C---ATGCGTATGT-GTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACCTGTATATATATATGGTGATAAGGCCGAATGGCCA
* * *
71181084 ATGTGATGAATGTGAACATG---A-ATATAT-GTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACCTGTATATATATATGGTGATAAGGCCGAATGGCCA
71181131 ATG
1 ATG
71181134 CGAAACATGT
Statistics
Matches: 132, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
47 61 0.46
49 6 0.05
51 30 0.23
52 3 0.02
53 32 0.24
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.28
Consensus pattern (52 bp):
ATGTGATGAATGTGAACCTGTATATATATATGGTGATAAGGCCGAATGGCCA
Found at i:71181173 original size:46 final size:46
Alignment explanation
Indices: 71181107--71181197 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
71181097 GAACATGAAT
* *
71181107 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
71181153 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
71181198 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:71181397 original size:37 final size:37
Alignment explanation
Indices: 71181347--71181454 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
71181337 GGAAATATAT
71181347 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
71181384 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
71181421 TCCGGGTAAGATCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
71181455 TCGTCTAAGC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:71184070 original size:51 final size:51
Alignment explanation
Indices: 71184007--71184201 Score: 295
Period size: 51 Copynumber: 3.8 Consensus size: 51
71183997 TACATGGTGA
* *
71184007 CCTTCACATAGTACCACCCTTGT-ACACAAAGCTATTTTATTCACAAAGTGG
1 CCTTCACATAGTACCACACTTGTGTC-CAAAGCTATTTTATTCACAAAGTGG
* * *
71184058 CATTCACCTAGTACTACACTTGTGTCCAAAGCTATTATT-TTCACAAAGTGG
1 CCTTCACATAGTACCACACTTGTGTCCAAAGCTATT-TTATTCACAAAGTGG
*
71184109 CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACGAAGTGG
1 CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
*
71184160 CCTTCACATAGTACCACACCTGTGTCCAAAGCTATTTTATTC
1 CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
71184202 CTAATGTACC
Statistics
Matches: 131, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
50 2 0.02
51 126 0.96
52 3 0.02
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (51 bp):
CCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAAGTGG
Found at i:71184256 original size:28 final size:24
Alignment explanation
Indices: 71184234--71184306 Score: 121
Period size: 24 Copynumber: 3.0 Consensus size: 24
71184224 ACTTAGCACA
71184234 ATGCCATGGA-TATATTTCACTTAG
1 ATGCCATGGACT-TATTTCACTTAG
71184258 ATGCCATGGACTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
*
71184282 ATGCCATGGTCTTATTTCACTTAG
1 ATGCCATGGACTTATTTCACTTAG
71184306 A
1 A
71184307 AAAATGTCAT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
24 46 0.98
25 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.16, T:0.38
Consensus pattern (24 bp):
ATGCCATGGACTTATTTCACTTAG
Found at i:71185941 original size:66 final size:66
Alignment explanation
Indices: 71185827--71185974 Score: 233
Period size: 66 Copynumber: 2.2 Consensus size: 66
71185817 ATGAGACATG
** ** * *
71185827 TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTATGGGGCATGTTTGACTCTATGAGTCT
1 TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTACAGAACATGTTTGACTCTATCACTCT
71185892 A
66 A
71185893 TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTACAGAACATGTTTGACTCTATCACTCT
1 TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTACAGAACATGTTTGACTCTATCACTCT
71185958 A
66 A
*
71185959 TTTGGTGTGTTAGAGA
1 TTTGGTGTGTTGGAGA
71185975 TTCGTGTATC
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 75 1.00
ACGTcount: A:0.19, C:0.13, G:0.26, T:0.42
Consensus pattern (66 bp):
TTTGGTGTGTTGGAGAGTGTTAGCTTTATGCTTCACTTACAGAACATGTTTGACTCTATCACTCT
A
Found at i:71187959 original size:22 final size:22
Alignment explanation
Indices: 71187926--71187968 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
71187916 AGTAAATTTT
71187926 AATGTTTAATTACCATTATGAG
1 AATGTTTAATTACCATTATGAG
*
71187948 AATGCTTT-ATTACTATTATGA
1 AATG-TTTAATTACCATTATGA
71187969 ATATGTGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (22 bp):
AATGTTTAATTACCATTATGAG
Found at i:71188133 original size:21 final size:21
Alignment explanation
Indices: 71188109--71188178 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
71188099 TAATCTGAAC
*
71188109 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTATGAGT
* **
71188130 TCA-TGATATATGTGGCATATGAAA
1 TCATTGA-GT-TGTGG--TATGAGT
*
71188154 TCATTGAGTTGTGGTTTGAGT
1 TCATTGAGTTGTGGTATGAGT
71188175 TCAT
1 TCAT
71188179 GATATATGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
20 3 0.08
21 12 0.33
22 5 0.14
23 5 0.14
24 8 0.22
25 3 0.08
ACGTcount: A:0.23, C:0.09, G:0.27, T:0.41
Consensus pattern (21 bp):
TCATTGAGTTGTGGTATGAGT
Found at i:71188160 original size:45 final size:45
Alignment explanation
Indices: 71188104--71188236 Score: 212
Period size: 45 Copynumber: 3.0 Consensus size: 45
71188094 TTATGTAATC
* *
71188104 TGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGGCATA
1 TGAAATCATTGAGTTGTGGTTTGAGTTCATGATATATGTGGCATA
71188149 TGAAATCATTGAGTTGTGGTTTGAGTTCATGATATATGTGGCATA
1 TGAAATCATTGAGTTGTGGTTTGAGTTCATGATATATGTGGCATA
** * *
71188194 TGAAATCATTGAGTTACGGTTTGAGTTCATGATGTATATGGCA
1 TGAAATCATTGAGTTGTGGTTTGAGTTCATGATATATGTGGCA
71188237 CATATTTTGG
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.38
Consensus pattern (45 bp):
TGAAATCATTGAGTTGTGGTTTGAGTTCATGATATATGTGGCATA
Found at i:71189765 original size:10 final size:10
Alignment explanation
Indices: 71189746--71189781 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
71189736 AAATTTTTCT
71189746 AAGTTATCCTA
1 AAGTT-TCCTA
71189757 AAGTTTCCTA
1 AAGTTTCCTA
*
71189767 AAGTTTTCTA
1 AAGTTTCCTA
71189777 AAGTT
1 AAGTT
71189782 CTCGATTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 19 0.79
11 5 0.21
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (10 bp):
AAGTTTCCTA
Found at i:71193974 original size:40 final size:39
Alignment explanation
Indices: 71193929--71194136 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 39
71193919 CGGAATACAA
*
71193929 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71193969 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71194009 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
71194049 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * *
71194089 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
71194129 CCGGATAT
1 CCGGATAT
71194137 CATTCAATTG
Statistics
Matches: 143, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 1 0.01
40 142 0.99
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:71194069 original size:80 final size:81
Alignment explanation
Indices: 71193929--71194134 Score: 256
Period size: 80 Copynumber: 2.6 Consensus size: 81
71193919 CGGAATACAA
* * *
71193929 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
71193993 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
71194009 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAA
*
71194072 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
** * * * *
71194089 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
71194135 ATCATTCAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 105 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:71202012 original size:40 final size:39
Alignment explanation
Indices: 71201967--71202174 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 39
71201957 CGGAATACAA
* *
71201967 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
71202007 CCGGATAGAATGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
71202047 CCGGATTTAA-CAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-AC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
71202087 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
* * *
71202127 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
71202167 CCGGATAT
1 CCGGATAT
71202175 CATTCAATTG
Statistics
Matches: 142, Mismatches: 23, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 140 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:71202107 original size:80 final size:80
Alignment explanation
Indices: 71201967--71202173 Score: 263
Period size: 80 Copynumber: 2.6 Consensus size: 80
71201957 CGGAATACAA
* * * *
71201967 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATCACTAGCACAAATG
*
71202032 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * *
71202047 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCACTAGCACAATT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAG-AATCACTAGCACAAAT
*
71202111 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * * * *
71202127 CCGGATATAATTACTAGCACAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
71202174 TCATTCAATT
Statistics
Matches: 109, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
79 1 0.01
80 108 0.99
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATCACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:71205597 original size:37 final size:37
Alignment explanation
Indices: 71205544--71205665 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
71205534 TTATTACGAA
* *
71205544 GTCTTACTCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
71205581 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
71205618 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
71205655 GTCTCACCCGG
1 GTCTTACCCGG
71205666 AACATTTTCC
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.21, C:0.33, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:71205915 original size:47 final size:47
Alignment explanation
Indices: 71205761--71205983 Score: 313
Period size: 47 Copynumber: 4.7 Consensus size: 47
71205751 CATATATTTT
* *
71205761 ACATTAGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACC
1 ACATTGGCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCATC
*
71205810 ACATCGGCCATTAGGCCTTATCACATATACATACACTTTCACATTCATC
1 ACATTGGCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCATC
* *
71205859 ACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATC
1 ACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
* *
71205906 ACATTGGCCA-TACGGCCTTATCACACATATGCACTTTCACATTCATC
1 ACATTGGCCATTA-GGCCTTATCACATATATACACTTTCACATTCATC
* *
71205953 ACATTGGCCATTCGGCCTTATCACACATATA
1 ACATTGGCCATTAGGCCTTATCACATATATA
71205984 TGTATATCAT
Statistics
Matches: 162, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
46 2 0.01
47 85 0.52
48 1 0.01
49 74 0.46
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATC
Found at i:71205984 original size:96 final size:97
Alignment explanation
Indices: 71205761--71205984 Score: 312
Period size: 96 Copynumber: 2.3 Consensus size: 97
71205751 CATATATTTT
* * *
71205761 ACATTAGCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGC
1 ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
*
71205826 CTTATCACATATACATACACTTTCACATTCATC
66 CTTATCACACATA-ATACACTTTCACATTCATC
* * * *
71205859 ACATCGGCCATTAGGCCTTAT--CACATATATACTCTTTCACATTCATCACATTGGCCA-TACGG
1 ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTA-GG
*
71205921 CCTTATCACACAT-ATGCACTTTCACATTCATC
65 CCTTATCACACATAATACACTTTCACATTCATC
*
71205953 ACATTGGCCATTCGGCCTTATCACACATATAT
1 ACATTGGCCATTAGGCCTTATCACACATATAT
71205985 GTATATCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
94 37 0.33
95 2 0.02
96 54 0.48
98 19 0.17
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (97 bp):
ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
CTTATCACACATAATACACTTTCACATTCATC
Found at i:71209498 original size:71 final size:71
Alignment explanation
Indices: 71209414--71209577 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
71209404 CGATTTGTCT
71209414 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
71209479 CTTTCA
66 CTTTCA
71209485 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
71209550 CTTTCA
66 CTTTCA
71209556 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
71209578 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:71209615 original size:71 final size:70
Alignment explanation
Indices: 71209414--71209611 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
71209404 CGATTTGTCT
* * * *
71209414 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71209479 CTTTCA
65 CTTTCA
* * * *
71209485 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71209550 CTTTCA
65 CTTTCA
* *
71209556 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
71209612 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:71217074 original size:71 final size:71
Alignment explanation
Indices: 71216990--71217153 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
71216980 CGATTTGTCT
71216990 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
71217055 CTTTCA
66 CTTTCA
71217061 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
71217126 CTTTCA
66 CTTTCA
71217132 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
71217154 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:71217191 original size:71 final size:70
Alignment explanation
Indices: 71216990--71217187 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
71216980 CGATTTGTCT
* * * *
71216990 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71217055 CTTTCA
65 CTTTCA
* * * *
71217061 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71217126 CTTTCA
65 CTTTCA
* *
71217132 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
71217188 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:71224595 original size:71 final size:71
Alignment explanation
Indices: 71224509--71224672 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
71224499 CGATTTGTCT
71224509 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
71224574 CTTTCA
66 CTTTCA
71224580 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
71224645 CTTTCA
66 CTTTCA
71224651 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
71224673 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:71224710 original size:71 final size:70
Alignment explanation
Indices: 71224509--71224706 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
71224499 CGATTTGTCT
* * * *
71224509 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71224574 CTTTCA
65 CTTTCA
* * * *
71224580 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
71224645 CTTTCA
65 CTTTCA
* *
71224651 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
71224707 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:71230863 original size:40 final size:38
Alignment explanation
Indices: 71230814--71230921 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
71230804 ATCACGATTT
*
71230814 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
71230854 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
71230894 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
71230922 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:71238960 original size:80 final size:80
Alignment explanation
Indices: 71238876--71239024 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
71238866 TATGGTAACC
* * * *
71238876 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
71238940 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
71238956 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
71239021 CCGG
66 CCGG
71239025 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:71238966 original size:40 final size:38
Alignment explanation
Indices: 71238917--71239024 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
71238907 ATCACGATTT
*
71238917 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
71238957 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
71238997 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
71239025 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:71248139 original size:204 final size:204
Alignment explanation
Indices: 71247789--71248182 Score: 761
Period size: 204 Copynumber: 1.9 Consensus size: 204
71247779 ATAATAATAG
*
71247789 TGTAACACCCCGGACCCAAGCCCGTTACTGGAGTCGAACACAAGGTGCACACAAACTCAGCTAAA
1 TGTAACACCCCGGACCCAAGCCCGTTACCGGAGTCGAACACAAGGTGCACACAAACTCAGCTAAA
71247854 TTGTTTTCACAGTCCATAAAAATTTTCCAGACTAGCTGGTTACTGCGTCACTGTCGCTTCAAAAA
66 TTGTTTTCACAGTCCATAAAAATTTTCCAGACTAGCTGGTTACTGCGTCACTGTCGCTTCAAAAA
71247919 TCATATCTTGAGTTTTAAAGCTCGAAAATCAGTTTCGTAATTTTTCCCCGAAACTAGACTTATAA
131 TCATATCTTGAGTTTTAAAGCTCGAAAATCAGTTTCGTAATTTTTCCCCGAAACTAGACTTATAA
71247984 TTATAAAAT
196 TTATAAAAT
* *
71247993 TGTAACACCCCGTACCCGAGCCCGTTACCGGAGTCGAACACAAGGTGCACACAAACTCAGCTAAA
1 TGTAACACCCCGGACCCAAGCCCGTTACCGGAGTCGAACACAAGGTGCACACAAACTCAGCTAAA
71248058 TTGTTTTCACAGTCCATAAAAATTTTCCAGACTAGCTGGTTACTGCGTCACTGTCGCTTCAAAAA
66 TTGTTTTCACAGTCCATAAAAATTTTCCAGACTAGCTGGTTACTGCGTCACTGTCGCTTCAAAAA
71248123 TCATATCTTGAGTTTTAAAGCTCGAAAATCAGTTTCGTAATTTTTCCCCGAAACTAGACT
131 TCATATCTTGAGTTTTAAAGCTCGAAAATCAGTTTCGTAATTTTTCCCCGAAACTAGACT
71248183 CATAGTTCCA
Statistics
Matches: 187, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
204 187 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (204 bp):
TGTAACACCCCGGACCCAAGCCCGTTACCGGAGTCGAACACAAGGTGCACACAAACTCAGCTAAA
TTGTTTTCACAGTCCATAAAAATTTTCCAGACTAGCTGGTTACTGCGTCACTGTCGCTTCAAAAA
TCATATCTTGAGTTTTAAAGCTCGAAAATCAGTTTCGTAATTTTTCCCCGAAACTAGACTTATAA
TTATAAAAT
Found at i:71259797 original size:20 final size:21
Alignment explanation
Indices: 71259765--71259804 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
71259755 CTATAAAAGT
71259765 TAGTTAAGTTTTA-GTTTGAC
1 TAGTTAAGTTTTATGTTTGAC
71259785 TAGTTAA-TGTTTATGTTTGA
1 TAGTTAAGT-TTTATGTTTGA
71259805 ATTCTAGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 11 0.61
21 6 0.33
ACGTcount: A:0.25, C:0.03, G:0.20, T:0.53
Consensus pattern (21 bp):
TAGTTAAGTTTTATGTTTGAC
Found at i:71264674 original size:2 final size:2
Alignment explanation
Indices: 71264667--71264700 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
71264657 AAATGGCATA
71264667 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71264701 GTGTGTGTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71265395 original size:40 final size:40
Alignment explanation
Indices: 71265299--71265482 Score: 232
Period size: 40 Copynumber: 4.5 Consensus size: 40
71265289 TATTCGGATG
71265299 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
*
71265342 ATA-CTCGGGCTAAGTCTCGAAGGCATTTGTGCTAG-TGACT
1 ATATC-CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
**
71265382 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
71265422 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
*
71265462 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
71265483 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
39 15 0.12
40 79 0.62
41 3 0.02
42 1 0.01
43 29 0.23
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:71269656 original size:21 final size:22
Alignment explanation
Indices: 71269630--71269670 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
71269620 CTCTTAACAC
*
71269630 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACACCCGTGTGGG
71269651 AGGGGCAACACACCCGTGTG
1 AGGGGCAACACACCCGTGTG
71269671 ACATTTCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACACCCGTGTGGG
Found at i:71273577 original size:46 final size:46
Alignment explanation
Indices: 71273510--71273683 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
71273500 TGTAACCCGC
*
71273510 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
71273556 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
71273606 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
71273648 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
71273684 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:71273676 original size:92 final size:93
Alignment explanation
Indices: 71273518--71273688 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
71273508 GCCCATAAGT
* *
71273518 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
71273583 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
71273611 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
71273675 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
71273689 CAAATATCCA
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 47 0.63
93 28 0.37
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71273702 original size:45 final size:45
Alignment explanation
Indices: 71273515--71273702 Score: 168
Period size: 46 Copynumber: 4.1 Consensus size: 45
71273505 CCCGCCCATA
* * * * * *
71273515 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCATACATCC
*
71273561 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-C
* * * *
71273609 A-CGAACTCGGACTCAACTCAACGAGTTCGGACAT-CGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCC
* *
71273653 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC
71273698 AGTGA
1 AGTGA
71273703 CATGTCACTT
Statistics
Matches: 115, Mismatches: 18, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
43 2 0.02
44 9 0.08
45 35 0.30
46 36 0.31
47 28 0.24
48 3 0.03
49 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC
Found at i:71276110 original size:30 final size:30
Alignment explanation
Indices: 71276066--71276154 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
71276056 CAAAGATAAC
71276066 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
71276095 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
71276125 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
71276155 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:71276114 original size:15 final size:15
Alignment explanation
Indices: 71276066--71276145 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
71276056 CAAAGATAAC
*
71276066 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
71276080 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
71276095 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
71276110 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
71276125 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
71276140 AAGAAA
1 AAGAAA
71276146 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:71276154 original size:15 final size:15
Alignment explanation
Indices: 71276077--71276154 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
71276067 AGAAAACCGA
71276077 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
71276092 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
71276106 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
71276121 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
71276137 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
71276152 ATA
1 ATA
71276155 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:71279164 original size:46 final size:46
Alignment explanation
Indices: 71279097--71279270 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
71279087 TGTAACCCGC
*
71279097 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
71279143 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
71279193 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
71279235 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
71279271 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 9, Indels: 19
0.80 0.07 0.14
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 1 0.01
44 3 0.03
45 28 0.25
46 35 0.32
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:71279263 original size:92 final size:93
Alignment explanation
Indices: 71279105--71279275 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
71279095 GCCCATAAGT
* *
71279105 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
71279170 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
71279198 GAACTCGGACTCAACTCAACGAGTTCGGAC-ATCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
71279262 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
71279276 CAAATATCCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 47 0.63
93 28 0.37
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGATCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71284875 original size:40 final size:40
Alignment explanation
Indices: 71284830--71284997 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
71284820 CGGAATATAA
71284830 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
71284870 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
71284910 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
71284950 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
71284990 CCGGATAT
1 CCGGATAT
71284998 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:71292905 original size:40 final size:40
Alignment explanation
Indices: 71292860--71293026 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
71292850 CGGAATATAA
71292860 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
71292900 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
71292940 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
71292980 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
71293019 CCGGATAT
1 CCGGATAT
71293027 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:71295982 original size:43 final size:42
Alignment explanation
Indices: 71295854--71296017 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 42
71295844 TCCGATATGC
* *
71295854 GATTTCATGTAAGACCATGTCTGGGACGTTGGCATCGACT-TAT
1 GATTTCATGTAAGACCATGTCTGGGAAG-TGGCATCGA-TATTT
* * *
71295897 GATTTACGTGTAAGACCATGTTTGGGACA-TTG-ATGCCG-TATTT
1 GATTT-CATGTAAGACCATGTCTGGGA-AGTGGCAT--CGATATTT
* *
71295940 GATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATTT
1 GATTTCATGTAAGACCATGTCTGGGA-AGTGGCATCGATATTT
* * *
71295983 GATTACATGTAAGACCACGTCTGGGACGATGGCAT
1 GATTTCATGTAAGACCATGTCTGGGAAG-TGGCAT
71296018 TGTATGAGTT
Statistics
Matches: 98, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
42 26 0.27
43 49 0.50
44 23 0.23
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
GATTTCATGTAAGACCATGTCTGGGAAGTGGCATCGATATTT
Done.