Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 234 of 425
Found at i:71298655 original size:29 final size:29
Alignment explanation
Indices: 71298623--71298709 Score: 76
Period size: 29 Copynumber: 3.2 Consensus size: 29
71298613 AAGACCATGC
71298623 CAAGGCATGGCAATGGTGAGTTCATAAGG
1 CAAGGCATGGCAATGGTGAGTTCATAAGG
* * * * ** *
71298652 CAAGG-AT-ACCA-CGTAAGACCAT--GT
1 CAAGGCATGGCAATGGTGAGTTCATAAGG
71298676 CAAGGCATGGCAATGGTGAGTTCATAAGG
1 CAAGGCATGGCAATGGTGAGTTCATAAGG
71298705 CAAGG
1 CAAGG
71298710 ATACCACGTA
Statistics
Matches: 39, Mismatches: 14, Indels: 10
0.62 0.22 0.16
Matches are distributed among these distances:
24 6 0.15
25 2 0.05
26 9 0.23
27 9 0.23
28 2 0.05
29 11 0.28
ACGTcount: A:0.33, C:0.17, G:0.31, T:0.18
Consensus pattern (29 bp):
CAAGGCATGGCAATGGTGAGTTCATAAGG
Found at i:71298671 original size:53 final size:53
Alignment explanation
Indices: 71298491--71298750 Score: 261
Period size: 53 Copynumber: 4.8 Consensus size: 53
71298481 ATTAGGGTTT
* * * * * * *
71298491 AAGGATACCAAGTAAGACCATGCCAAGGCATGACATTAGTAAGTTTTACAAGGA
1 AAGGATACCACGTAAGACCATGCCAAGGCATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * * * *
71298545 AAGGAAATCATGTAAGACTATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGGCATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
71298600 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
* *
71298653 AAGGATACCACGTAAGACCATGTCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
*
71298706 AAGGATACCACGTAAGACCAT-CTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCACGTAAGACCATGC-CAAGGCATGGCAATGGTAAGTT
71298751 TAAAAATGAA
Statistics
Matches: 170, Mismatches: 33, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
53 97 0.57
54 35 0.21
55 38 0.22
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCACGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCATAAGGC
Found at i:71303251 original size:47 final size:47
Alignment explanation
Indices: 71303197--71303523 Score: 510
Period size: 47 Copynumber: 7.0 Consensus size: 47
71303187 TTAGGATTTT
** *
71303197 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
71303244 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
71303291 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
71303338 ATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
71303385 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
71303432 ATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
71303479 ATGTGGTGAATTTGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
71303524 TAGTGTGAAA
Statistics
Matches: 259, Mismatches: 21, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
47 259 1.00
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:71303318 original size:23 final size:23
Alignment explanation
Indices: 71303244--71303318 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 23
71303234 CGAATGGCCA
71303244 ATGTGATGAATGTGAGCATGCAT
1 ATGTGATGAATGTGAGCATGCAT
* * *
71303267 ATGTG-TGATAAG-GCCGAATGGCCA-
1 ATGTGATGA-ATGTG-AGCAT-G-CAT
71303291 ATGTGATGAATGTGAGCATGCAT
1 ATGTGATGAATGTGAGCATGCAT
71303314 ATGTG
1 ATGTG
71303319 TGATAAGGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 6 0.15
23 16 0.41
24 11 0.28
25 6 0.15
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAGCATGCAT
Found at i:71303487 original size:25 final size:25
Alignment explanation
Indices: 71303412--71303487 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
71303402 ATGCATATAT
71303412 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
71303437 ATGA-ACGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
71303459 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
71303484 GTGA
1 GTGA
71303488 ATTTGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.22
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:71303831 original size:37 final size:37
Alignment explanation
Indices: 71303694--71303830 Score: 238
Period size: 37 Copynumber: 3.7 Consensus size: 37
71303684 ATTTCAGATG
71303694 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
*
71303731 AGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
*
71303768 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
* *
71303805 AGACCCGATAACTTCGTGTGGAGATT
1 AGACCCGATGACTACGTGTGGAGATT
71303831 TCGTCTGAGC
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 95 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTATGTCCGGGTA
Found at i:71314949 original size:46 final size:47
Alignment explanation
Indices: 71314871--71315301 Score: 649
Period size: 47 Copynumber: 9.3 Consensus size: 47
71314861 ACAAGATATG
71314871 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
71314918 TATATGTGATAAGGCC-AATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
71314964 TATATGTGATAGGGCCGAGTGG-CAATGTGATGAATGTGAAA--GTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
71315008 TATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
71315055 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
71315102 TATATGTGATAGGGTC-AAGTGACCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAA-TGGCCAATGTGATGAATGTGAAAGTGTA
71315149 TATATGTGATAAGGCCGAATGGCCAATGTGATG-ATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
71315195 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
71315242 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
71315289 TAAATGTGATAAG
1 TATATGTGATAAG
71315302 TCCCGAAGGG
Statistics
Matches: 355, Mismatches: 22, Indels: 14
0.91 0.06 0.04
Matches are distributed among these distances:
44 24 0.07
45 19 0.05
46 107 0.30
47 203 0.57
48 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:71314981 original size:93 final size:94
Alignment explanation
Indices: 71314871--71315301 Score: 649
Period size: 93 Copynumber: 4.6 Consensus size: 94
71314861 ACAAGATATG
71314871 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC-A
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
71314935 ATGGCCAATGTGATGAATGTGAAAGTATA
66 ATGGCCAATGTGATGAATGTGAAAGTATA
* * *
71314964 TATATGTGATAGGGCCGAGTGG-CAATGTGATGAATGTGAAA--GTATATATGTGATAGGGCCGA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
*
71315026 GTGGCCAATGTGATGAATGTGAAAGTATA
66 ATGGCCAATGTGATGAATGTGAAAGTATA
* * * * *
71315055 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAGGGTC-A
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
* * *
71315119 AGTGACCAACGTGATGAATGTGAAAGTGTA
66 A-TGGCCAATGTGATGAATGTGAAAGTATA
* * *
71315149 TATATGTGATAAGGCCGAATGGCCAATGTGATG-ATGTGAAAGTGTATATATGAGATAAGACCTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
*
71315213 ATGGCCAATGTGATGAATGTGAAAGTGTA
66 ATGGCCAATGTGATGAATGTGAAAGTATA
* *
71315242 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
71315302 TCCCGAAGGG
Statistics
Matches: 310, Mismatches: 21, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
90 18 0.06
91 51 0.16
92 37 0.12
93 105 0.34
94 99 0.32
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (94 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAAAGTATA
Found at i:71317792 original size:38 final size:38
Alignment explanation
Indices: 71317728--71317802 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
71317718 AATCCGAGTT
*
71317728 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
71317766 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
71317803 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:71317913 original size:40 final size:40
Alignment explanation
Indices: 71317855--71318291 Score: 668
Period size: 40 Copynumber: 11.1 Consensus size: 40
71317845 AAGGTCTCAC
71317855 GATG-ATCC-GGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
71317893 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
71317933 GATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
71317973 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCCTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
71318013 GATATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
71318052 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
71318092 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
71318132 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
71318171 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
71318211 GATATATCCGTGCTAAACCCCGAA-AGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
71318250 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
71318290 GA
1 GA
71318292 CGTGTATTCG
Statistics
Matches: 371, Mismatches: 23, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
38 4 0.01
39 113 0.30
40 254 0.68
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:71318070 original size:119 final size:120
Alignment explanation
Indices: 71317855--71318278 Score: 678
Period size: 119 Copynumber: 3.6 Consensus size: 120
71317845 AAGGTCTCAC
*
71317855 GATG-ATCC-GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAG
*
71317918 AGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
66 AGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
71317973 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCCTGCTAGTGATATATCC-GGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAG
*
71318037 AGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
66 AGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
71318092 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-CCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAG
* *
71318156 AGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
66 AGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** * * * *
71318211 GATATATCCGTGCTAAACCCCGAA-AGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAG
71318275 AGCA
66 AGCA
71318279 ATCATGCTGG
Statistics
Matches: 284, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
118 32 0.11
119 207 0.73
120 45 0.16
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (120 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAG
AGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:71318074 original size:79 final size:80
Alignment explanation
Indices: 71317859--71318278 Score: 677
Period size: 79 Copynumber: 5.3 Consensus size: 80
71317849 TCTCACGATG
*
71317859 ATCC-GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
71317923 TCGTGCTAGTGATAT
66 TCATGCTAGTGATAT
71317938 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
71318003 TCCTGCTAGTGATAT
66 TCATGCTAGTGATAT
71318018 ATCC-GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
71318082 TCATGCTAGTGATGT
66 TCATGCTAGTGATAT
*
71318097 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-CCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
71318161 TCATGCTAGTGATGT
66 TCATGCTAGTGATAT
* * * **
71318176 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAA-AGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* * *
71318240 TCGTGCTGGTGTTAT
66 TCATGCTAGTGATAT
*
71318255 ATCCGGGCTAGGTCCCGAAGAGCA
1 ATCCGGGCTAAGTCCCGAAGAGCA
71318279 ATCATGCTGG
Statistics
Matches: 321, Mismatches: 17, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
79 192 0.60
80 129 0.40
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCATGCTAGTGATAT
Found at i:71321665 original size:22 final size:22
Alignment explanation
Indices: 71321640--71321715 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
71321630 AGATATGTAT
71321640 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
71321662 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
71321686 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
71321709 ATGTGAT
1 ATGTGAT
71321716 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:71321690 original size:25 final size:25
Alignment explanation
Indices: 71321662--71321740 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
71321652 CGAATGGCCA
71321662 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
71321687 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
*
71321709 ATGTGATGAATGTGAAAGTATATAT
1 ATGTGATGAATGTGAAAGTGTATAT
71321734 ATGTGAT
1 ATGTGAT
71321741 AGGGCCGAGT
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 7 0.18
25 15 0.39
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:71321690 original size:47 final size:47
Alignment explanation
Indices: 71321637--71321978 Score: 567
Period size: 47 Copynumber: 7.3 Consensus size: 47
71321627 ACAAGATATG
71321637 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
71321684 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
71321731 TATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
71321778 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTAAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
71321825 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
71321872 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
71321919 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
71321966 TAAATGTGATAAG
1 TATATGTGATAAG
71321979 TCCCGAAGGG
Statistics
Matches: 277, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 277 1.00
ACGTcount: A:0.35, C:0.08, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:71323891 original size:48 final size:48
Alignment explanation
Indices: 71323820--71324234 Score: 659
Period size: 48 Copynumber: 8.6 Consensus size: 48
71323810 GGGGTGTTAC
* * *
71323820 ATATGTGGTAAGGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
* *
71323868 ATATGTCGTAAAGCCGAATGGCTAATGTGAAATATATGTGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
* * *
71323916 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATGTGTGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
*
71323964 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
*
71324012 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
* * *
71324060 ATATGTGGTAAAGCCGAATGGCTGATGTGAAATATATGTGTGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
71324108 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
* * * * *
71324156 ATATGTCGTAAAGCCGAATGGCGACTGTGAAATATGTATGAGATATGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
*
71324204 ATATGTGGTAAAGCCAAATGGCTAATGTGAA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
71324235 TGTTGTAACA
Statistics
Matches: 343, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 343 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
Found at i:71324328 original size:37 final size:37
Alignment explanation
Indices: 71324278--71324437 Score: 293
Period size: 37 Copynumber: 4.3 Consensus size: 37
71324268 GGAAATATAT
*
71324278 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
71324315 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
71324352 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
71324389 TCCGGGTAATACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
71324426 TCCGGGTAAGAC
1 TCCGGGTAAGAC
71324438 TTCGTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 118 1.00
ACGTcount: A:0.24, C:0.20, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:71325680 original size:40 final size:40
Alignment explanation
Indices: 71325616--71325925 Score: 539
Period size: 40 Copynumber: 7.8 Consensus size: 40
71325606 GAGAATTGAG
* * *
71325616 AGTGATATATCCGGGCTAAATTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
71325656 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
71325696 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
71325736 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
71325776 AGTGATGTATCCAGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
71325816 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
71325856 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
71325896 AGTGATGTATCCGGGCTAGGTCCCGAAGAG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAG
71325926 AATCATGCTG
Statistics
Matches: 260, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 260 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:71329541 original size:48 final size:48
Alignment explanation
Indices: 71329417--71330176 Score: 1214
Period size: 48 Copynumber: 16.0 Consensus size: 48
71329407 AGATAAATAT
* *
71329417 ATATATGTGTGATATGTATATGTGGT-AAGCTGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
71329464 ATATATAT-AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
71329511 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
71329559 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
71329607 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTG-A
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
71329654 A-ATATGTATGAGTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGA-TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
71329702 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
71329750 ATATATGTG-AATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
71329797 ATATATATGAGATATGTA-ATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
71329844 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
71329892 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
71329940 ATATATATGAGATATGTATATGTGGT-AAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
71329987 ATATATATGAGATATGTATATGT-GTAAAGCCGAATTGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
71330034 ATATATGTGTGATATGTATATATGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
71330082 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
71330130 ATATGTATGAGATATGAATATGTGGTAAAG-CGAATGGCTAATGTGAA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
71330177 TGTTGTAACA
Statistics
Matches: 667, Mismatches: 37, Indels: 18
0.92 0.05 0.02
Matches are distributed among these distances:
46 27 0.04
47 257 0.39
48 374 0.56
49 9 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:71329725 original size:95 final size:96
Alignment explanation
Indices: 71329417--71330176 Score: 1266
Period size: 95 Copynumber: 8.0 Consensus size: 96
71329407 AGATAAATAT
* *
71329417 ATATATGTGTGATATGTATATGTGGT-AAGCTGAATGGCGAATGTGAAATATATAT-AGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
71329480 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
71329511 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
71329576 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
71329607 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG-TATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
71329671 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
71329702 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGA-ATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
71329766 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
71329797 ATATATATGAGATATGTA-ATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
71329861 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
71329892 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
71329957 ATATGTGGT-AAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * * *
71329987 ATATATATGAGATATGTATATGT-GTAAAGCCGAATTGCTAATGTGAAATATATGTGTGATATGT
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
*
71330051 ATATATGGTAAAGCCGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * * * *
71330082 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATGA
1 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
71330147 ATATGTGGTAAAG-CGAATGGCTAATGTGAA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAA
71330177 TGTTGTAACA
Statistics
Matches: 630, Mismatches: 29, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
94 110 0.17
95 325 0.52
96 195 0.31
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (96 bp):
ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:71330276 original size:37 final size:37
Alignment explanation
Indices: 71330221--71330380 Score: 284
Period size: 37 Copynumber: 4.3 Consensus size: 37
71330211 GGAAATATAT
*
71330221 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
71330258 TCCGGGTAAGACCTGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
71330295 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
71330332 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
71330369 TCCGGGTAAGAC
1 TCCGGGTAAGAC
71330381 TTCGTAATAA
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 116 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:71332149 original size:42 final size:43
Alignment explanation
Indices: 71332096--71332190 Score: 129
Period size: 42 Copynumber: 2.2 Consensus size: 43
71332086 TATGATTTAT
* * * *
71332096 GTGTAAGACCCTGTCTAGAACATTGGCGTTG-TATTTGATTTC
1 GTGTAAGACCCTATCTAGAACAATGGCATTGATATTTGATTAC
*
71332138 GTGTAAGACCCTATCTAGGACAATGGCATTGATATTTGATTAC
1 GTGTAAGACCCTATCTAGAACAATGGCATTGATATTTGATTAC
*
71332181 ATGTAAGACC
1 GTGTAAGACC
71332191 ACGTCTGGGA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 27 0.59
43 19 0.41
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCCTATCTAGAACAATGGCATTGATATTTGATTAC
Found at i:71332208 original size:43 final size:43
Alignment explanation
Indices: 71332097--71332211 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
71332087 ATGATTTATG
* * * *
71332097 TGTAAGACCCTGTCTAGAACATTGGCGTTG-TATTTGATTTCG
1 TGTAAGACCCTGTCTAGGACATTGGCATTGATATTTGATTACA
* *
71332139 TGTAAGACCCTATCTAGGACAATGGCATTGATATTTGATTACA
1 TGTAAGACCCTGTCTAGGACATTGGCATTGATATTTGATTACA
* *
71332182 TGTAAGACCAC-GTCTGGGACGTTGGCATTG
1 TGTAAGACC-CTGTCTAGGACATTGGCATTG
71332212 TATGAGCTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 26 0.43
43 34 0.56
44 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTAAGACCCTGTCTAGGACATTGGCATTGATATTTGATTACA
Found at i:71334953 original size:17 final size:17
Alignment explanation
Indices: 71334931--71334964 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
71334921 ATGTTTTTGG
71334931 TCATTTAAATTGGTCTA
1 TCATTTAAATTGGTCTA
71334948 TCATTTAAATTGGTCTA
1 TCATTTAAATTGGTCTA
71334965 AGTGATGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
TCATTTAAATTGGTCTA
Found at i:71340710 original size:42 final size:43
Alignment explanation
Indices: 71340602--71340730 Score: 129
Period size: 43 Copynumber: 3.0 Consensus size: 43
71340592 AACTCGTACA
* * *
71340602 ATGCCAACGTCCCAGACATGGTCTTACGTGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
* * * *
71340645 ATGCCACTATCCTAGATAG-GGTCTTACATG-AAGTCAAATAT-G
1 ATGCCAATGTCCCAGA-CGTGGTCTTACATGTAA-TCAAATATCG
* * *
71340687 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
71340730 A
1 A
71340731 AATCTTATGT
Statistics
Matches: 68, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 33 0.49
43 34 0.50
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:71350188 original size:518 final size:518
Alignment explanation
Indices: 71348437--71350692 Score: 3463
Period size: 518 Copynumber: 4.4 Consensus size: 518
71348427 TGAAATGGTA
*
71348437 CCATTTTTATCTTATGTAGGTACATTGAAGTTGGGGTGGCAAATTGGCCTTGCAAATGGCCTACT
1 CCATTTTTGTCTTATGTAGGTACATTGAAGTTGGGGTGGCAAATTGGCCTTGCAAATGGCCTACT
*
71348502 TTTGTCCACACAAGCAGAGACACAGGTGTGTCTCTTAGCCGTGTGTGACACACGGTCATGTTACA
66 TTTGTCCACACAAGCAGAGACACGGGTGTGTCTCTTAGCCGTGTGTGACACACGGTCATGTTACA
* *
71348567 CATCCATGTGTCCCCTGGTGAAGAAATTGAATTGAATTCAGCAAGCTCCACACGATCTCCCACAT
131 CATCCATGTGTCCCCTGGTGATGAAATTGAATTGAATTCAGTAAGCTCCACACGATCTCCCACAT
* * * *
71348632 GGGCGTGTGACTGGTCGTGTGGTACAAGTCAGTATACTCCCCTAATTGGCACACGGCCAAGGTAC
196 GGGCGTGTGACTGGCCATGTGGTACAAGTCAGTATAC-CCTCTAATTGGCACATGGCCAAGGTAC
* *
71348697 ACACACACGAGCATGTGCTTTGGTCGTGTTGCATAAGTCAGTATGCCCTCTAGTTTTCACACAGC
260 ACACACACGAGCATGTGCCTTGGTCGTGTTGCATAAGTCAGTATACCCTCTAGTTTTCACACAGC
* * *
71348762 CTGGCAC-CTGGGCGA-GTCTTCGGCCGTGTGATATAAGTTAGTATGTATGCCCTCTTTCTACAC
325 CTGGCACAC-GGGC-ATGTCTTCGGCCGTGTGATACAAGTCAGTATGTATGCCCTGTTTCTACAC
71348825 GGCCTGAGACACAGTCATGTCTGAAGCCGTGTGAGGCACACGGCCTGTTCACACTAGCGTGTTGA
388 GGCCTGAGACACAGTCATGTCTGAAGCCGTGTGAGGCACACGGCCTGTTCACACTAGCGTGTTGA
* * * * *
71348890 ATGACGAAAATGTGCAAGTGTACACAATCACAACAAGTAATAAAGTGACAAGTAAATTTCACTTA
453 ACGATGGAAATGTGCAAGTGTACACAATCGCAACAAGTAATAAAGTGACAAGTAAATGTCACTTA
71348955 G
518 G
* *
71348956 CCATTTTT-TCTTATGTAGGTATATTGAAGTTGGGGTGGCAAATTAGCCTTGCAAATGGCCTACT
1 CCATTTTTGTCTTATGTAGGTACATTGAAGTTGGGGTGGCAAATTGGCCTTGCAAATGGCCTACT
**
71349020 TTTGTCCACACAAGCAGAGACACGGGTGTGTCTCTTAGATGTGTGTGACACACGGTCATGTTACA
66 TTTGTCCACACAAGCAGAGACACGGGTGTGTCTCTTAGCCGTGTGTGACACACGGTCATGTTACA
*
71349085 CATCCATGTGCCCCCTGGTGATGAAATTGAATTGAAGTT-AGTAAGCTCCACACGATCTCCCACA
131 CATCCATGTGTCCCCTGGTGATGAAATTGAATTGAA-TTCAGTAAGCTCCACACGATCTCCCACA
*
71349149 TGGGCCTGTGACTGGCCATGTGGTACAAGTCAGTATACCC-CTAATTGGCACATGGCCAAGGTAC
195 TGGGCGTGTGACTGGCCATGTGGTACAAGTCAGTATACCCTCTAATTGGCACATGGCCAAGGTAC
* * *
71349213 ACACACACGAACGTGTGCCTTGGTCGTGTTGCATAAGTCAGTATACCCTCTAGTTTTCACACTGC
260 ACACACACGAGCATGTGCCTTGGTCGTGTTGCATAAGTCAGTATACCCTCTAGTTTTCACACAGC
* * * * * * *
71349278 CTAGCACACGGGCGTGTATTCGGTCGTGTGATACAAGTCAGTATATATGCCATGTTTCTACATGG
325 CTGGCACACGGGCATGTCTTCGGCCGTGTGATACAAGTCAGTATGTATGCCCTGTTTCTACACGG
* * *
71349343 CCTAAGACACAGTCATGTTTGAAGCCGTGTGAGGCACACGGCCTATTCACACTAGCGTGTTGAAC
390 CCTGAGACACAGTCATGTCTGAAGCCGTGTGAGGCACACGGCCTGTTCACACTAGCGTGTTGAAC
* *
71349408 GA-CGATAATGTACAAGTGTACACAATCGCAACAAGTAATAAAGTGACAAGTAAATGTCACTTAG
455 GATGGA-AATGTGCAAGTGTACACAATCGCAACAAGTAATAAAGTGACAAGTAAATGTCACTTAG
* * *
71349472 CCATTTCTGTCTTATGTAGGTACATTGAAGTTGGGGTGGCAAATTGGCCTTGCAAATAGCCTAAT
1 CCATTTTTGTCTTATGTAGGTACATTGAAGTTGGGGTGGCAAATTGGCCTTGCAAATGGCCTACT
* * * * *
71349537 TTTGTCCACACAAGTAGAGACACGAGTGTGTCTCTTATCCGTGTGTGATACACGGTCATATTACA
66 TTTGTCCACACAAGCAGAGACACGGGTGTGTCTCTTAGCCGTGTGTGACACACGGTCATGTTACA
* * * * *
71349602 TATCTATGTGTCCCCTGATGATGAAATTGAATTCAAGTCAGTAAGCTCCACACGATCTCCCACAT
131 CATCCATGTGTCCCCTGGTGATGAAATTGAATTGAATTCAGTAAGCTCCACACGATCTCCCACAT
* * * *
71349667 GGGCGTGTGACTGGCCGTGTGGTACAAGTTAGTATACCCTTCTAATTCGCACATGACCAAGGTAC
196 GGGCGTGTGACTGGCCATGTGGTACAAGTCAGTATACCC-TCTAATTGGCACATGGCCAAGGTAC
* * * *
71349732 ACACATACGAGCGTGTGCCTTGGCCGTGTTGCATAAGTCAGTATACCCTCTAGTTTTCACACAGT
260 ACACACACGAGCATGTGCCTTGGTCGTGTTGCATAAGTCAGTATACCCTCTAGTTTTCACACAGC
* * *
71349797 CTGGCACACGGGCATGTCTTCGGCCGTTTGATACAAGTCAATATGTATGCCCTGTTTCTACACAG
325 CTGGCACACGGGCATGTCTTCGGCCGTGTGATACAAGTCAGTATGTATGCCCTGTTTCTACACGG
* * *
71349862 CATGAGACACAGTCATGTCTGAAGCCGTGTGAGGCACACGGCCTGTTCACACTAACGTTTTGAAC
390 CCTGAGACACAGTCATGTCTGAAGCCGTGTGAGGCACACGGCCTGTTCACACTAGCGTGTTGAAC
* * *
71349927 GATGGAAATGTGCAAGTGTACATAATCGCAAC-AGGAATAAAGTGTCAAGTAAATGTCACTTAG
455 GATGGAAATGTGCAAGTGTACACAATCGCAACAAGTAATAAAGTGACAAGTAAATGTCACTTAG
*
71349990 CCATTTTTGTCTTATGTAGGTACATTGAAGTTGGGGTGGCAAATTGGCCTTGCAAATGGACTACT
1 CCATTTTTGTCTTATGTAGGTACATTGAAGTTGGGGTGGCAAATTGGCCTTGCAAATGGCCTACT
* * * *
71350055 TTTGTCCATACAAGTAGAGACACGGGTGTGTCTCTTAGCCTTGTGTGACACACAGTCATGTTACA
66 TTTGTCCACACAAGCAGAGACACGGGTGTGTCTCTTAGCCGTGTGTGACACACGGTCATGTTACA
* * *
71350120 CATCCATGTGTCCCCTGGTGATGAACTTGAATTGAATTCAGTAAGATCCACACGATCTCCCTCAT
131 CATCCATGTGTCCCCTGGTGATGAAATTGAATTGAATTCAGTAAGCTCCACACGATCTCCCACAT
*
71350185 GGGCGTGTGACTGGCCATGTGGTACAAGTTAGTATACCCCTCTAATTGG--CA--GCCAAGGTAC
196 GGGCGTGTGACTGGCCATGTGGTACAAGTCAGTATA-CCCTCTAATTGGCACATGGCCAAGGTAC
* *
71350246 ACACACACGAGCATGTGCCTTGGTCGTGTTGCATAAGTCAGTATACCCTCTAGGTTTCACATAGC
260 ACACACACGAGCATGTGCCTTGGTCGTGTTGCATAAGTCAGTATACCCTCTAGTTTTCACACAGC
* * * *
71350311 CTGGCACACGGACGTGTCTTCGGCCATGTGATACAAGTCAGTATGTATGCCCTGTTTCGACACGG
325 CTGGCACACGGGCATGTCTTCGGCCGTGTGATACAAGTCAGTATGTATGCCCTGTTTCTACACGG
* * *
71350376 CCTGAGACATAGTCATGTCTGAAGCCGTGTGAGGCACATGGCCTGTTCACACTATCGTGTTGAAC
390 CCTGAGACACAGTCATGTCTGAAGCCGTGTGAGGCACACGGCCTGTTCACACTAGCGTGTTGAAC
* * * *
71350441 AATGGAAATGTGCAGGTGTACACAATCGAAACAAGTAATAATGTGACAAGTAAATGTCACTTAG
455 GATGGAAATGTGCAAGTGTACACAATCGCAACAAGTAATAAAGTGACAAGTAAATGTCACTTAG
*
71350505 CCATTTTTTTCTTATGTAGGTACATTGAAGTTGGGGTGGCAAATTGGCCTTGCAAATGGCCTACT
1 CCATTTTTGTCTTATGTAGGTACATTGAAGTTGGGGTGGCAAATTGGCCTTGCAAATGGCCTACT
* * * * *
71350570 TGTGTCCACACAAGAAGAGAAATGGGTGTGTCTCTTAGCCGTGTGTAACACACGGTCATGTTACA
66 TTTGTCCACACAAGCAGAGACACGGGTGTGTCTCTTAGCCGTGTGTGACACACGGTCATGTTACA
* * * *
71350635 CATCCATGTGTCCCCTAGTGATGAAATTAAATTGAAGTCAATAAGCTCCACACGATCT
131 CATCCATGTGTCCCCTGGTGATGAAATTGAATTGAATTCAGTAAGCTCCACACGATCT
71350693 GTAACACCCC
Statistics
Matches: 1578, Mismatches: 148, Indels: 26
0.90 0.08 0.01
Matches are distributed among these distances:
514 214 0.14
515 201 0.13
516 263 0.17
517 206 0.13
518 457 0.29
519 235 0.15
520 2 0.00
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (518 bp):
CCATTTTTGTCTTATGTAGGTACATTGAAGTTGGGGTGGCAAATTGGCCTTGCAAATGGCCTACT
TTTGTCCACACAAGCAGAGACACGGGTGTGTCTCTTAGCCGTGTGTGACACACGGTCATGTTACA
CATCCATGTGTCCCCTGGTGATGAAATTGAATTGAATTCAGTAAGCTCCACACGATCTCCCACAT
GGGCGTGTGACTGGCCATGTGGTACAAGTCAGTATACCCTCTAATTGGCACATGGCCAAGGTACA
CACACACGAGCATGTGCCTTGGTCGTGTTGCATAAGTCAGTATACCCTCTAGTTTTCACACAGCC
TGGCACACGGGCATGTCTTCGGCCGTGTGATACAAGTCAGTATGTATGCCCTGTTTCTACACGGC
CTGAGACACAGTCATGTCTGAAGCCGTGTGAGGCACACGGCCTGTTCACACTAGCGTGTTGAACG
ATGGAAATGTGCAAGTGTACACAATCGCAACAAGTAATAAAGTGACAAGTAAATGTCACTTAG
Found at i:71351352 original size:6 final size:6
Alignment explanation
Indices: 71351342--71351395 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
71351332 TATCACAACT
* * *
71351342 AGAATT AGAATC AGAATC AGAATC AGTATC AGGTAA-C AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
71351391 AGAAT
1 AGAAT
71351396 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
5 2 0.05
6 34 0.85
7 3 0.08
8 1 0.03
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:71351929 original size:27 final size:27
Alignment explanation
Indices: 71351899--71351994 Score: 147
Period size: 27 Copynumber: 3.6 Consensus size: 27
71351889 AACACCCTAG
**
71351899 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTATAAATCGA
*
71351926 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTATAAATCGA
*
71351953 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTATAAATCGA
*
71351980 GGGTAAAACAATAAT
1 GGGTAAAACAGTAAT
71351995 GCTGTAACAC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTATAAATCGA
Found at i:71357074 original size:28 final size:28
Alignment explanation
Indices: 71357042--71357131 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
71357032 ATCGATCTCA
*
71357042 CACACATATTGCTCGGTTAAAGAATTCG
1 CACACATAGTGCTCGGTTAAAGAATTCG
* * ** * **
71357070 CACACACAGTGCCCACTGACCG-ATCTCG
1 CACACATAGTGCTCGGTTAAAGAAT-TCG
71357098 CACACATAGTGCTCGGTTAAAGAATTCG
1 CACACATAGTGCTCGGTTAAAGAATTCG
71357126 CACACA
1 CACACA
71357132 CAGTTCCTCA
Statistics
Matches: 45, Mismatches: 15, Indels: 4
0.70 0.23 0.06
Matches are distributed among these distances:
27 2 0.04
28 41 0.91
29 2 0.04
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (28 bp):
CACACATAGTGCTCGGTTAAAGAATTCG
Found at i:71357102 original size:56 final size:56
Alignment explanation
Indices: 71357013--71357135 Score: 212
Period size: 56 Copynumber: 2.2 Consensus size: 56
71357003 AAACGAAATC
* *
71357013 CGCACACACA-TGCCCACTGATCGATCTCACACACATATTGCTCGGTTAAAGAATT
1 CGCACACACAGTGCCCACTGACCGATCTCACACACATAGTGCTCGGTTAAAGAATT
*
71357068 CGCACACACAGTGCCCACTGACCGATCTCGCACACATAGTGCTCGGTTAAAGAATT
1 CGCACACACAGTGCCCACTGACCGATCTCACACACATAGTGCTCGGTTAAAGAATT
71357124 CGCACACACAGT
1 CGCACACACAGT
71357136 TCCTCAATTC
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
55 10 0.16
56 54 0.84
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (56 bp):
CGCACACACAGTGCCCACTGACCGATCTCACACACATAGTGCTCGGTTAAAGAATT
Found at i:71357355 original size:43 final size:43
Alignment explanation
Indices: 71357294--71357410 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 43
71357284 CTTTGCTTGA
**
71357294 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCAAATACAC
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGACCCAAATACAC
* * * *
71357337 ATCACCGGCACGAAGCCTGCTAGGAACGAAGGCCCGAATACAC
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAGACCCAAATACAC
* *
71357380 ATCACCAGCACAAAGCCTGCTAGGCATGAAG
1 ATCACCGGCACAAAGCCTGCTAGGCACGAAG
71357411 GCCTGATTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.34, C:0.32, G:0.22, T:0.12
Consensus pattern (43 bp):
ATCACCGGCACAAAGCCTGCTAGGCACGAAGACCCAAATACAC
Found at i:71357411 original size:43 final size:43
Alignment explanation
Indices: 71357306--71357428 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 43
71357296 CACCGGCATT
* * * *
71357306 AAGCCTGCTAGGCACGAAGACCCAAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACA
*
71357349 AAGCCTGCTAGGAACGAAGGCCCGAATACACATCACCAGCACA
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACA
* * * *
71357392 AAGCCTGCTAGGCATGAAGGCCTGATTACATATCACC
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
71357429 GACACGAATG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 70 1.00
ACGTcount: A:0.34, C:0.32, G:0.21, T:0.13
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACA
Found at i:71357490 original size:40 final size:40
Alignment explanation
Indices: 71357431--71357585 Score: 247
Period size: 40 Copynumber: 3.9 Consensus size: 40
71357421 ATATCACCGA
* * *
71357431 CACGAATGCCCTTCAGGACTTATCCCGGATATAACACCAG
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAG
*
71357471 CATGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAG
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAG
*
71357511 CACGAATGCTCTTCGAGACTTAGCCCGGATATAACACCAG
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAG
* *
71357551 CACGAATGCTCTTCGGTACTTAGTCCGGATATAAC
1 CACGAATGCTCTTCGGGACTTAGCCCGGATATAAC
71357586 TCTCAATTCT
Statistics
Matches: 106, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAG
Found at i:71362826 original size:27 final size:27
Alignment explanation
Indices: 71362796--71363032 Score: 258
Period size: 27 Copynumber: 8.7 Consensus size: 27
71362786 GGATGTCACA
*
71362796 AATTCTGTCAATCGAGGGTAAAACGGT
1 AATTCTGTAAATCGAGGGTAAAACGGT
*
71362823 AATTCTGTAAATCGAGGGTAAAACAGT
1 AATTCTGTAAATCGAGGGTAAAACGGT
* * *
71362850 AATTTTGTAAATTGAGGATAAAACGGT
1 AATTCTGTAAATCGAGGGTAAAACGGT
* * * ***
71362877 TATTCTATAAATCGAGGCTAAAATAAT
1 AATTCTGTAAATCGAGGGTAAAACGGT
* *
71362904 AATTCTATAAATCGAGGGTAAAATGGT
1 AATTCTGTAAATCGAGGGTAAAACGGT
* *
71362931 AATTTTGTAAATCAAGGGTAAAACGGT
1 AATTCTGTAAATCGAGGGTAAAACGGT
* * **
71362958 AATTTTATAAATCGAGGGTAAAATAGT
1 AATTCTGTAAATCGAGGGTAAAACGGT
**
71362985 AATTCTGTAAATCGAGGGTAAAACAAT
1 AATTCTGTAAATCGAGGGTAAAACGGT
* *
71363012 AATTTTTGTAATTCGAGGGTA
1 AA-TTCTGTAAATCGAGGGTA
71363033 CTTTGATAAT
Statistics
Matches: 177, Mismatches: 32, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
27 161 0.91
28 16 0.09
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
AATTCTGTAAATCGAGGGTAAAACGGT
Found at i:71362882 original size:54 final size:54
Alignment explanation
Indices: 71362805--71363032 Score: 285
Period size: 54 Copynumber: 4.2 Consensus size: 54
71362795 AAATTCTGTC
* *
71362805 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTTTATA
* * * * * * *
71362859 AATTGAGGATAAAACGGTTATTCTATAAATCGAGGCTAAAATAATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTTTATA
* * * **
71362913 AATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAACGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTTTATA
** *
71362967 AATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACAATAATTTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAA-TTTTATA
*
71363022 ATTCGAGGGTA
1 AATCGAGGGTA
71363033 CTTTGATAAT
Statistics
Matches: 145, Mismatches: 28, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
54 129 0.89
55 16 0.11
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAATAATTTTATA
Found at i:71362933 original size:81 final size:81
Alignment explanation
Indices: 71362822--71363022 Score: 294
Period size: 81 Copynumber: 2.5 Consensus size: 81
71362812 GGTAAAACGG
** *
71362822 TAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATTGAGGATAAAACGGTTATTCTATAA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGATAAAACGGTAATTCTATAA
71362887 ATCGAGGCTAAAATAA
66 ATCGAGGCTAAAATAA
* ** * *
71362903 TAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAACGGTAATTTTATAA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGATAAAACGGTAATTCTATAA
* *
71362968 ATCGAGGGTAAAATAG
66 ATCGAGGCTAAAATAA
*
71362984 TAATTCTGTAAATCGAGGGTAAAACAATAATTTTTGTAA
1 TAATTCTGTAAATCGAGGGTAAAACAGTAA-TTTTGTAA
71363023 TTCGAGGGTA
Statistics
Matches: 105, Mismatches: 14, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
81 97 0.92
82 8 0.08
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.32
Consensus pattern (81 bp):
TAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCAAGGATAAAACGGTAATTCTATAA
ATCGAGGCTAAAATAA
Found at i:71363084 original size:27 final size:27
Alignment explanation
Indices: 71363054--71363178 Score: 112
Period size: 27 Copynumber: 4.7 Consensus size: 27
71363044 TTACATGTCA
*
71363054 AGGGTATTTCAGTAATTTTGCAAACTG
1 AGGGTATTTCAGTAATTTTACAAACTG
*
71363081 AGGGTATTTCAGTAATTTTAC-AATTCG
1 AGGGTATTTCAGTAATTTTACAAACT-G
* ** * * *
71363108 AGGATATTTGGGTAATTTTATATACCG
1 AGGGTATTTCAGTAATTTTACAAACTG
* *
71363135 GGGGTACTTT-GGTAATTTTAC-AACTG
1 AGGGTA-TTTCAGTAATTTTACAAACTG
*
71363161 GGGGTATTTCAGTAATTT
1 AGGGTATTTCAGTAATTT
71363179 GGTAAACTGA
Statistics
Matches: 79, Mismatches: 15, Indels: 9
0.77 0.15 0.09
Matches are distributed among these distances:
25 3 0.04
26 19 0.24
27 53 0.67
28 4 0.05
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAACTG
Found at i:71363116 original size:54 final size:54
Alignment explanation
Indices: 71363026--71363188 Score: 154
Period size: 54 Copynumber: 3.0 Consensus size: 54
71363016 TTTGTAATTC
* *
71363026 GAGGGTACTTT-GATAATTTTAC-ATGTCAAGGGTATTTCAGTAATTTTGCAAACT
1 GAGGGTACTTTAG-TAATTTTACAAT-TCGAGGGTATTTCAGTAATTTTGTAAACT
* ** * * *
71363080 GAGGGTA-TTTCAGTAATTTTACAATTCGAGGATATTTGGGTAATTTTATATACC
1 GAGGGTACTTT-AGTAATTTTACAATTCGAGGGTATTTCAGTAATTTTGTAAACT
* * * * *
71363134 GGGGGTACTTTGGTAATTTTACAACT-GGGGGTATTTCAGTAATTTGGTAAACT
1 GAGGGTACTTTAGTAATTTTACAATTCGAGGGTATTTCAGTAATTTTGTAAACT
71363187 GA
1 GA
71363189 AGTATTCTAA
Statistics
Matches: 85, Mismatches: 20, Indels: 9
0.75 0.18 0.08
Matches are distributed among these distances:
53 23 0.27
54 56 0.66
55 6 0.07
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (54 bp):
GAGGGTACTTTAGTAATTTTACAATTCGAGGGTATTTCAGTAATTTTGTAAACT
Found at i:71369673 original size:22 final size:24
Alignment explanation
Indices: 71369639--71369684 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
71369629 ATACTATGCT
71369639 AATTGATAAAGAT-TAA-TATATA
1 AATTGATAAAGATATAATTATATA
71369661 AATT-ATAATAGATATAATTATATA
1 AATTGATAA-AGATATAATTATATA
71369685 TTAAAGATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 3 0.14
24 6 0.29
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (24 bp):
AATTGATAAAGATATAATTATATA
Found at i:71394773 original size:40 final size:40
Alignment explanation
Indices: 71394728--71394857 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
71394718 CGGAATACAA
71394728 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
71394768 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
71394808 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
71394848 CCGGATATAA
1 CCGGATATAA
71394858 TTTCCAGCAA
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:71398119 original size:29 final size:29
Alignment explanation
Indices: 71398086--71398159 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
71398076 GTGACGAGAT
71398086 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
71398115 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
71398144 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
71398160 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:71398175 original size:29 final size:29
Alignment explanation
Indices: 71398143--71398218 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
71398133 CTGGAAATAT
* *
71398143 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
71398172 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
71398201 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
71398219 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:71398186 original size:58 final size:58
Alignment explanation
Indices: 71398086--71398218 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
71398076 GTGACGAGAT
* * * * * *
71398086 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
71398144 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
71398202 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
71398219 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:71405991 original size:29 final size:29
Alignment explanation
Indices: 71405958--71406089 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
71405948 GTGACGAGAT
*
71405958 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
71405987 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
71406016 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
71406045 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
71406074 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
71406090 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:71410739 original size:40 final size:41
Alignment explanation
Indices: 71410695--71410802 Score: 132
Period size: 40 Copynumber: 2.7 Consensus size: 41
71410685 TAATAGCTCA
* * *
71410695 CACAAATGCCTTCGGGACTTAACCCGGATTTGGGAAC-TCG
1 CACAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTTAG
* **
71410735 CACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAG
1 CACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGAACTTAG
71410776 CACAAA-GCCTTCGGGACTTAGCCCGGA
1 CACAAATGCCTTCGGGACTTAGCCCGGA
71410803 CATCATTCGA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 3 0.05
40 44 0.76
41 11 0.19
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (41 bp):
CACAAATGCCTTCGGGACTTAGCCCGGATATGGGAACTTAG
Found at i:71415568 original size:28 final size:28
Alignment explanation
Indices: 71415535--71415638 Score: 136
Period size: 28 Copynumber: 3.7 Consensus size: 28
71415525 ACTCAATGCT
71415535 TCGCACACTAAGTGCCATACTCAATATC
1 TCGCACACTAAGTGCCATACTCAATATC
* * * **
71415563 TTGCACATTAAGTGCCACACTCGGTATC
1 TCGCACACTAAGTGCCATACTCAATATC
* *
71415591 TCGCACACTAAGTGCCACACTCGATATC
1 TCGCACACTAAGTGCCATACTCAATATC
*
71415619 TCACACACTAAGTGCCATAC
1 TCGCACACTAAGTGCCATAC
71415639 ATATCCGAAG
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.24
Consensus pattern (28 bp):
TCGCACACTAAGTGCCATACTCAATATC
Found at i:71415667 original size:40 final size:40
Alignment explanation
Indices: 71415619--71415726 Score: 162
Period size: 40 Copynumber: 2.7 Consensus size: 40
71415609 ACTCGATATC
*
71415619 TCACACACTAAGTGCCATACATATCCGAAGCTATCTCAAA
1 TCACACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* * *
71415659 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCAAA
1 TCACACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* *
71415699 TCACACACTAAGTGCCACAAATAGCCGA
1 TCACACACTAAGTGCCATACATAGCCGA
71415727 TTTTTTGTCG
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.37, C:0.29, G:0.14, T:0.20
Consensus pattern (40 bp):
TCACACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
Found at i:71433573 original size:39 final size:39
Alignment explanation
Indices: 71433530--71433659 Score: 215
Period size: 39 Copynumber: 3.3 Consensus size: 39
71433520 TCTTTAACCT
* ** *
71433530 GGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCC
1 GGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
71433569 GGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
1 GGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
71433608 GGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
1 GGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
*
71433647 GAATATATTTCCA
1 GGATATATTTCCA
71433660 ATCTCATATA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (39 bp):
GGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCC
Found at i:71436928 original size:25 final size:25
Alignment explanation
Indices: 71436894--71436943 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
71436884 ACATAGGTCT
*
71436894 AGCTTTCATCTCGGCTAGAATTGAA
1 AGCTATCATCTCGGCTAGAATTGAA
71436919 AGCTATCATCTCGGCTAGAATTGAA
1 AGCTATCATCTCGGCTAGAATTGAA
71436944 CCATCATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (25 bp):
AGCTATCATCTCGGCTAGAATTGAA
Found at i:71440486 original size:21 final size:20
Alignment explanation
Indices: 71440452--71440491 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
71440442 CTCTTGAAAT
*
71440452 AGGGCACACGCCTGTGTGAA
1 AGGGCACACACCTGTGTGAA
71440472 AGGGCAACACACCTGTGTGA
1 AGGGC-ACACACCTGTGTGA
71440492 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.28, C:0.25, G:0.33, T:0.15
Consensus pattern (20 bp):
AGGGCACACACCTGTGTGAA
Found at i:71441793 original size:49 final size:49
Alignment explanation
Indices: 71441681--71441866 Score: 191
Period size: 49 Copynumber: 3.8 Consensus size: 49
71441671 GGGTTAAGAT
* * * * * *
71441681 GCCGACGCCATGTCCCAAACATGGTCTTACACTGGCTTTCATATAGCGAG
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTAGCTCTCATATATCAAG
* * *
71441731 GCCAATGCTATGTCCCAGACAGGTCTTACACTAGCTCTCATCTATC-AG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCAAG
* * *
71441779 TGTCGATGCCATGTCCTAGACAGGTCTTACACTAGCT-T-GTATATCGCAAG
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATAT--CAAG
*
71441829 GCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTC
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTC
71441867 GTATCAATGC
Statistics
Matches: 113, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
47 4 0.04
48 29 0.26
49 61 0.54
50 19 0.17
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCAAG
Found at i:71441855 original size:97 final size:99
Alignment explanation
Indices: 71441687--71441866 Score: 267
Period size: 98 Copynumber: 1.8 Consensus size: 99
71441677 AGATGCCGAC
* *
71441687 GCCATGTCCCAAACATGGTCTTACACTGGCTTTCATATAGCGAGGCCAATGCTATGTCCCAGACA
1 GCCATGTCCCAAACATGGTCTTACACTAGCTTTCATATAGCAAGGCCAATGCTATGTCCCAGACA
71441752 GGTCTTACACTAGCTCTCATCTATCAGTGTCGAT
66 GGTCTTACACTAGCTCTCATCTATCAGTGTCGAT
* * * *
71441786 GCCATGTCCTAGACA-GGTCTTACACTAGCTTGT-ATATCGCAAGGCCGATGC-ATGTCCCAGAC
1 GCCATGTCCCAAACATGGTCTTACACTAGCTT-TCATATAGCAAGGCCAATGCTATGTCCCAGAC
*
71441848 ATGTCTTACACTAGCTCTC
65 AGGTCTTACACTAGCTCTC
71441867 GTATCAATGC
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
97 29 0.40
98 30 0.41
99 14 0.19
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (99 bp):
GCCATGTCCCAAACATGGTCTTACACTAGCTTTCATATAGCAAGGCCAATGCTATGTCCCAGACA
GGTCTTACACTAGCTCTCATCTATCAGTGTCGAT
Found at i:71443565 original size:27 final size:26
Alignment explanation
Indices: 71443518--71443568 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
71443508 CAAGGCTGCC
*
71443518 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
71443544 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
71443569 TTGCAGCTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:71444250 original size:27 final size:27
Alignment explanation
Indices: 71444220--71444419 Score: 197
Period size: 27 Copynumber: 7.4 Consensus size: 27
71444210 GGGGCAAAAT
* * *
71444220 GGTAATTTTACCCCACAAGGATATCTC
1 GGTAATTCTACCCTACAAGGATATTTC
* *
71444247 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGATATTTC
*
71444274 GGTAGTTCTACCCTACAA-GAGTATTTC
1 GGTAATTCTACCCTACAAGGA-TATTTC
* *
71444301 GGTAATTCTATCCTAC-AGGTGTATTTC
1 GGTAATTCTACCCTACAAGG-ATATTTC
* *
71444328 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGATATTTC
** * * *
71444355 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGATATTTC
* * * *
71444382 GGTAATTCTACCTTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGATATTTC
71444409 GGTAATTCTAC
1 GGTAATTCTAC
71444420 AACTTATCCA
Statistics
Matches: 150, Mismatches: 19, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
26 2 0.01
27 146 0.97
28 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGATATTTC
Found at i:71444303 original size:54 final size:54
Alignment explanation
Indices: 71444220--71444419 Score: 265
Period size: 54 Copynumber: 3.7 Consensus size: 54
71444210 GGGGCAAAAT
* * * *
71444220 GGTAATTTTACCCCACAAGGATATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * * *
71444274 GGTAGTTCTACCCTACAAGAGTATTTCGGTAATTCTATCCTACAGGTGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* ** *
71444328 GGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
71444382 GGTAATTCTACCTTATAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTAC
71444420 AACTTATCCA
Statistics
Matches: 126, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 126 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:71444337 original size:81 final size:81
Alignment explanation
Indices: 71444245--71444419 Score: 262
Period size: 81 Copynumber: 2.2 Consensus size: 81
71444235 CAAGGATATC
** *
71444245 TCGGTAATTCTACCCTACAGGGGTATTTCGGTAGTTCTACCCTACAAGAGTATTTCGGTAATTCT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGAGTATTTCGGTAATTCT
*
71444310 ATCC-TACAGGTGTATT
66 A-CCTTACAGGGGTATT
* * *
71444326 TCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGGTAATTCT
1 TCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGAGTATTTCGGTAATTCT
*
71444391 ACCTTATAGGGGTATT
66 ACCTTACAGGGGTATT
71444407 TCGGTAATTCTAC
1 TCGGTAATTCTAC
71444420 AACTTATCCA
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
80 2 0.02
81 83 0.98
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (81 bp):
TCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGAGTATTTCGGTAATTCT
ACCTTACAGGGGTATT
Found at i:71449075 original size:17 final size:18
Alignment explanation
Indices: 71449043--71449076 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71449033 CTCTCCTAAA
71449043 ACGGTTCCGATCTTTCTC
1 ACGGTTCCGATCTTTCTC
*
71449061 ACGGTTCTG-TCTTTCT
1 ACGGTTCCGATCTTTCT
71449077 GTATGCTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.09, C:0.29, G:0.18, T:0.44
Consensus pattern (18 bp):
ACGGTTCCGATCTTTCTC
Found at i:71451094 original size:2 final size:2
Alignment explanation
Indices: 71451087--71451112 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
71451077 CCACCAGAAC
71451087 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
71451113 GTGGTGAAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71451193 original size:27 final size:26
Alignment explanation
Indices: 71451145--71451196 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
71451135 CCGAGGCTGC
*
71451145 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
71451171 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
71451197 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:71452048 original size:27 final size:27
Alignment explanation
Indices: 71451848--71452047 Score: 258
Period size: 27 Copynumber: 7.4 Consensus size: 27
71451838 GGGGCAAAAT
* * * *
71451848 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
71451875 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
71451902 GGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
71451929 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
71451956 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
71451983 AATAATTCTACGCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71452010 AGTAATTCTA-CATGACAGGGGTATTTC
1 GGTAATTCTACCCT-ACAGGGGTATTTC
71452037 GGTAATTCTAC
1 GGTAATTCTAC
71452048 AACTTATCCA
Statistics
Matches: 152, Mismatches: 19, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 151 0.99
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:71459903 original size:20 final size:20
Alignment explanation
Indices: 71459878--71459922 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
71459868 CAGGACTAAA
71459878 TCAAAAACAA-ATAAA-ATTTT
1 TCAAAAA-AAGATAAACA-TTT
71459898 TCAAAAAAAGATAAACATTT
1 TCAAAAAAAGATAAACATTT
71459918 TCAAA
1 TCAAA
71459923 TTGTAGGGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.09
20 20 0.87
21 1 0.04
ACGTcount: A:0.60, C:0.11, G:0.02, T:0.27
Consensus pattern (20 bp):
TCAAAAAAAGATAAACATTT
Found at i:71461169 original size:30 final size:30
Alignment explanation
Indices: 71461133--71461195 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
71461123 TTTACCAATC
*
71461133 GATAGCCGAAGCTAAG-TTATTTCATAATTT
1 GATAGCCGAAGCTAAGCCT-TTTCATAATTT
*
71461163 GATAGCCGAAGCTATGCCTTTTCATAATTT
1 GATAGCCGAAGCTAAGCCTTTTCATAATTT
71461193 GAT
1 GAT
71461196 TGTCGTCACC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (30 bp):
GATAGCCGAAGCTAAGCCTTTTCATAATTT
Found at i:71461213 original size:30 final size:30
Alignment explanation
Indices: 71461179--71461252 Score: 116
Period size: 29 Copynumber: 2.5 Consensus size: 30
71461169 CGAAGCTATG
*
71461179 CCTTTTCATAATTTGATTGTCGTCACCATC
1 CCTTTTCATAATTTGATGGTCGTCACCATC
71461209 CCTTTTCAT--TGTTGATGGTCGTCACCATC
1 CCTTTTCATAAT-TTGATGGTCGTCACCATC
71461238 CCTTTTCATAATTTG
1 CCTTTTCATAATTTG
71461253 GTAGTCGAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
28 1 0.03
29 26 0.65
30 12 0.30
31 1 0.03
ACGTcount: A:0.18, C:0.26, G:0.12, T:0.45
Consensus pattern (30 bp):
CCTTTTCATAATTTGATGGTCGTCACCATC
Found at i:71461270 original size:29 final size:30
Alignment explanation
Indices: 71461152--71461393 Score: 138
Period size: 30 Copynumber: 8.1 Consensus size: 30
71461142 AGCTAAGTTA
* *
71461152 TTTCATAATTTGATAGCCGAAGCTATGCCT
1 TTTCATAATTTGATAGTCGAAGCTATCCCT
* * *
71461182 TTTCATAATTTGATTGTCGTCA-CCATCCCT
1 TTTCATAATTTGATAGTCG-AAGCTATCCCT
* * *
71461212 TTTCAT--TGTTGATGGTCGTCA-CCATCCCT
1 TTTCATAAT-TTGATAGTCG-AAGCTATCCCT
* *
71461241 TTTCATAATTTGGTAGTCGAAGCTATCCTT
1 TTTCATAATTTGATAGTCGAAGCTATCCCT
** *
71461271 TTTCATAATTCAATA-TCCGAAGCTATCTCT
1 TTTCATAATTTGATAGT-CGAAGCTATCCCT
** * ** *
71461301 TTTCATTGTTTGATGGTCTTCA-CCATCCCT
1 TTTCATAATTTGATAGTC-GAAGCTATCCCT
* * * *
71461331 TTTAACAACTTGATAG-CTAAGGCTATCCCT
1 TTTCATAATTTGATAGTCGAA-GCTATCCCT
* * *
71461361 TTTCATTAATTTCATAGCCAAAGCTATCCCT
1 TTTCA-TAATTTGATAGTCGAAGCTATCCCT
71461392 TT
1 TT
71461394 CCATTAGCCA
Statistics
Matches: 162, Mismatches: 38, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
28 3 0.02
29 29 0.18
30 104 0.64
31 23 0.14
32 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (30 bp):
TTTCATAATTTGATAGTCGAAGCTATCCCT
Found at i:71461356 original size:90 final size:90
Alignment explanation
Indices: 71461206--71461398 Score: 239
Period size: 90 Copynumber: 2.1 Consensus size: 90
71461196 TGTCGTCACC
* * * * *
71461206 ATCCCTTTTCATTGTTGATGGTCGTCACCATCCCTTTTCATAATTTGGTAGTCGAAGCTATCCTT
1 ATCCCTTTTCATTGTTGATGGTCGTCACCATCCCTTTTAACAACTTGATAGTCGAAGCTATCCCT
* *
71461271 TTTCA-TAA-TTCAATATCCGAAGCT
66 TTTCATTAATTTC-ATAGCCAAAGCT
* * *
71461295 ATCTCTTTTCATTGTTTGATGGTCTTCACCATCCCTTTTAACAACTTGATAG-CTAAGGCTATCC
1 ATCCCTTTTCATTG-TTGATGGTCGTCACCATCCCTTTTAACAACTTGATAGTCGAA-GCTATCC
71461359 CTTTTCATTAATTTCATAGCCAAAGCT
64 CTTTTCATTAATTTCATAGCCAAAGCT
*
71461386 ATCCCTTTCCATT
1 ATCCCTTTTCATT
71461399 AGCCAATGAT
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
89 16 0.18
90 45 0.51
91 24 0.27
92 3 0.03
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.41
Consensus pattern (90 bp):
ATCCCTTTTCATTGTTGATGGTCGTCACCATCCCTTTTAACAACTTGATAGTCGAAGCTATCCCT
TTTCATTAATTTCATAGCCAAAGCT
Found at i:71464677 original size:80 final size:80
Alignment explanation
Indices: 71464593--71464741 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
71464583 TATGGTAACC
* * * *
71464593 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
71464657 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
71464673 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
71464738 CCGG
66 CCGG
71464742 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:71464683 original size:40 final size:38
Alignment explanation
Indices: 71464634--71464741 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
71464624 ATCACGATTT
*
71464634 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
71464674 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
71464714 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
71464742 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:71476412 original size:40 final size:40
Alignment explanation
Indices: 71476357--71476531 Score: 257
Period size: 40 Copynumber: 4.4 Consensus size: 40
71476347 GATGATAACG
*
71476357 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
71476397 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
71476437 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
71476477 -GGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
71476516 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
71476532 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 2 0.02
39 47 0.37
40 77 0.61
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:71485324 original size:25 final size:25
Alignment explanation
Indices: 71485294--71485418 Score: 70
Period size: 25 Copynumber: 5.2 Consensus size: 25
71485284 TAGGATTTTA
71485294 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
71485319 TGTGAT-AAGGCCG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
*
71485341 TGTGATGAATATGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * * *
71485366 TGTGAT-AAGGCGGA-ATG-GCCA-A
1 TGTGATGAATGTGAACATGCG-TATG
71485388 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
71485413 TGTGAT
1 TGTGAT
71485419 AAGGCCGAAT
Statistics
Matches: 68, Mismatches: 20, Indels: 24
0.61 0.18 0.21
Matches are distributed among these distances:
22 15 0.22
23 16 0.24
24 16 0.24
25 21 0.31
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.28
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:71485344 original size:47 final size:47
Alignment explanation
Indices: 71485293--71485483 Score: 310
Period size: 47 Copynumber: 4.1 Consensus size: 47
71485283 TTAGGATTTT
71485293 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
71485340 ATGTGATGAATATGAACATGCGTATGTGTGATAAGGCGGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
71485387 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* ** * * *
71485434 ATGTAATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
71485481 ATG
1 ATG
71485484 CGAAACGTGT
Statistics
Matches: 134, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:71485523 original size:46 final size:46
Alignment explanation
Indices: 71485457--71485547 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
71485447 GAACATGTAT
* * *
71485457 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* *
71485503 ATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
71485548 TGTATATATG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:71489589 original size:132 final size:132
Alignment explanation
Indices: 71489276--71489887 Score: 902
Period size: 132 Copynumber: 4.6 Consensus size: 132
71489266 AATCCTACAA
* * * * * * *
71489276 ATCTCGTTTCCCTAAAGTTGCGGTAGAGCAGATCGAAGACCGTGAATCTAGGCTTCTTGAAATTG
1 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
* * *
71489341 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTTCCTAAAGTTGTAGT-GAGTACGCTAAAATTTT
66 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
71489405 AG
131 AG
* * * *
71489407 ATCTTGTTTCCCTGAAGTTGCAGTGGAGCAGATCGAAGACGGCGAATCTGGGCTTCCTGAAGTTG
1 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
*
71489472 CAGCGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
66 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
71489537 AG
131 AG
* *
71489539 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGGCGGTGAATCTGGGCTTCCTGAAGTTG
1 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
* *
71489604 CAGTGAAGCAGATTTAAGCCACCAACCAAGCTCTCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
66 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
71489669 AG
131 AG
*
71489671 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTA
1 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
* * * * *
71489736 CAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCTTAAAGTTGTAGTTGAGTAGGTTGAAGATTG
66 CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAA-ATTT
71489801 TAG
130 TAG
* * * * ** * * *
71489804 ATTTTGTCTCCCTGAAGTTGCAGTGGAGCAAATCAAAGACGACGAATCTTGTCCTCCTGAAGTTG
1 ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
71489869 CAGTGAAGCAGATTTAAGC
66 CAGTGAAGCAGATTTAAGC
71489888 AAGCCTTAAA
Statistics
Matches: 439, Mismatches: 40, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
131 101 0.23
132 258 0.59
133 80 0.18
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (132 bp):
ATCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGACGGTGAATCTAGGCTTCCTGAAGTTG
CAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTT
AG
Found at i:71490178 original size:14 final size:14
Alignment explanation
Indices: 71490159--71490195 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
71490149 AAAAGAAGAG
71490159 AATAATAAAAATCC
1 AATAATAAAAATCC
*
71490173 AATAATAAAAGTCC
1 AATAATAAAAATCC
*
71490187 AATATTAAA
1 AATAATAAA
71490196 TCCAAATACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.62, C:0.11, G:0.03, T:0.24
Consensus pattern (14 bp):
AATAATAAAAATCC
Found at i:71493040 original size:131 final size:131
Alignment explanation
Indices: 71492790--71493309 Score: 521
Period size: 131 Copynumber: 4.0 Consensus size: 131
71492780 TTCACAATTA
* * * *
71492790 TTAAGAATTCTTTAAAACGAAGGCGATATTCGAT-TCTTCGCAATTTGTGGAATCGTGCCCTAAC
1 TTAAAAATCCTTTAAAACGAAGGCGATATTCGATGT-TTGGCAATTCG-GGAATCGTGCCCTAAC
* * * ** *
71492854 GTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATGATCGAAGGTCCCTTTAGAATTTCACCCATGT
64 GTGCTGGGTTGTAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
71492919 CTT
129 CTT
* * * *
71492922 TTAAAAATCCCTT-AAACGAAGGCGATATGCGATATTTGGTAATTCGCGGAATCGTGCCCTAACG
1 TTAAAAATCCTTTAAAACGAAGGCGATATTCGATGTTTGGCAATTCG-GGAATCGTGCCCTAACG
* * * * * *
71492986 TGCTGGGTTGTAATTTCCCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTTCGCTCATGTC
65 TGCTGGGTTGTAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTC
71493051 TT
130 TT
* * * * * ** * *
71493053 CTAAAAATCCTTTAAAATGAAGGCAATATTCGGTGTTTGACAATTCGGGAATTATGCCCTATCCT
1 TTAAAAATCCTTTAAAACGAAGGCGATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTAACGT
* * * * * *
71493118 GCTAGGTTGTGATTTCTCGTTTGCTCAAAACAATCGAATATTCTTTTAGATTTTCACTCATGT-T
66 GCTGGGTTGTAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCT
71493182 T
131 T
* * * * *
71493183 ATTAAAAA-CCTTTCAAAACGAAGGTGATGTTCGATGTTTGGCAATTTGAGAATCGTGCCCTATC
1 -TTAAAAATCCTTT-AAAACGAAGGCGATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTAAC
*** * * *
71493247 GTGCTGGGTTGCGCTTTTTCATTTG-TCCAAAATAATCGAATATCCC-TTCGAAATTTCACTCAT
64 GTGCTGGGTTGTAATTTCTCGTTTGCT-CAAAATAATCGAATATCCCTTTAG-AATTTCACTCAT
71493310 ATTTTCTAAG
Statistics
Matches: 315, Mismatches: 67, Indels: 13
0.80 0.17 0.03
Matches are distributed among these distances:
130 11 0.03
131 267 0.85
132 37 0.12
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (131 bp):
TTAAAAATCCTTTAAAACGAAGGCGATATTCGATGTTTGGCAATTCGGGAATCGTGCCCTAACGT
GCTGGGTTGTAATTTCTCGTTTGCTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCT
T
Found at i:71494446 original size:44 final size:46
Alignment explanation
Indices: 71494397--71494489 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
71494387 TACAACATCT
*
71494397 ATTCCATTCAACCAAACACA-AGAATT-CT-ATTATAGCTCTATTCC
1 ATTCCATTCAACCAAACA-ATAGAATTACTGATTACAGCTCTATTCC
*
71494441 ATTCCATTCAACCAAACAATTGAATTACTGATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTCC
71494487 ATT
1 ATT
71494490 ACAATTCTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 1 0.02
44 23 0.52
45 2 0.05
46 18 0.41
ACGTcount: A:0.35, C:0.26, G:0.05, T:0.33
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAATAGAATTACTGATTACAGCTCTATTCC
Found at i:71494492 original size:16 final size:16
Alignment explanation
Indices: 71494479--71494524 Score: 83
Period size: 16 Copynumber: 2.9 Consensus size: 16
71494469 TGATTACAGC
71494479 TCTATTCCATTACAAT
1 TCTATTCCATTACAAT
*
71494495 TCTATTCAATTACAAT
1 TCTATTCCATTACAAT
71494511 TCTATTCCATTACA
1 TCTATTCCATTACA
71494525 GTGAACCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.43
Consensus pattern (16 bp):
TCTATTCCATTACAAT
Found at i:71495025 original size:26 final size:24
Alignment explanation
Indices: 71494995--71495080 Score: 82
Period size: 26 Copynumber: 3.3 Consensus size: 24
71494985 GTTATTAAAT
71494995 TTTAATAGGATTATTATTAAATATAA
1 TTTAATA--ATTATTATTAAATATAA
* * * *
71495021 TTTAATAATAAATAATTTAATCATAT
1 TTTAATAAT-TATTATTAAAT-ATAA
71495047 TTTAATATAATTATTATTAAATATAA
1 TTT-A-ATAATTATTATTAAATATAA
71495073 TTTAATAA
1 TTTAATAA
71495081 AAAAATATAT
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
24 6 0.12
25 9 0.19
26 19 0.40
27 9 0.19
28 5 0.10
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (24 bp):
TTTAATAATTATTATTAAATATAA
Found at i:71496048 original size:20 final size:19
Alignment explanation
Indices: 71496010--71496047 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
71496000 AGAGGAAAAA
71496010 AAAATTTTAATCATTTTTT
1 AAAATTTTAATCATTTTTT
71496029 AAAATTTATAAT-ATTTTTT
1 AAAATTT-TAATCATTTTTT
71496048 TGAATATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (19 bp):
AAAATTTTAATCATTTTTT
Found at i:71514447 original size:93 final size:94
Alignment explanation
Indices: 71514240--71514447 Score: 213
Period size: 93 Copynumber: 2.2 Consensus size: 94
71514230 TGTCATTTTG
*
71514240 CAAAGTTATAAGGTAAACACCCCAAGAGGAGACTTCTCACTAAGTTTAATAGAAGAACCACTTAT
1 CAAAGTTATAAAGTAAACACCCCAAGAGGAGACTTCTCACTAAGTTTAATAGAAGAACCACTTAT
** ** ***
71514305 AGCCTCATAAGGCACTTAGCTTTATTTTG
66 AGCCTCATAAGGCACTTAAATAAATTCAA
* * * * ** ** *
71514334 CATAGTTACAAAGCAAACACCTCAAGAGGAGA-TTGCTTGCTAA-TTTAATAGAAGAACTGCTTC
1 CAAAGTTATAAAGTAAACACCCCAAGAGGAGACTT-CTCACTAAGTTTAATAGAAGAACCACTTA
* *
71514397 TAGTCTCTTAAGGCACTTAAATAAATTCAA
65 TAGCCTCATAAGGCACTTAAATAAATTCAA
*
71514427 CAAAGTTATAAAGTAGACACC
1 CAAAGTTATAAAGTAAACACC
71514448 GAGAGGAAAT
Statistics
Matches: 90, Mismatches: 23, Indels: 3
0.78 0.20 0.03
Matches are distributed among these distances:
93 57 0.63
94 33 0.37
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.27
Consensus pattern (94 bp):
CAAAGTTATAAAGTAAACACCCCAAGAGGAGACTTCTCACTAAGTTTAATAGAAGAACCACTTAT
AGCCTCATAAGGCACTTAAATAAATTCAA
Found at i:71519451 original size:214 final size:214
Alignment explanation
Indices: 71519082--71519723 Score: 1275
Period size: 214 Copynumber: 3.0 Consensus size: 214
71519072 TGCAAAGATG
71519082 TTGCCTTATGGAACCAGCACTCTTCTGGTTGTTAGTGGCTGCTAGTTAAGTTAGGGGAGAATATT
1 TTGCCTTATGGAACCAGCACTCTTCTGGTTGTTAGTGGCTGCTAGTTAAGTTAGGGGAGAATATT
71519147 GCAGAAATTCAGATCTTATGATTCATTCTATACTTGTACAAAAAGAAAAATGAGACAAAGCAGAA
66 GCAGAAATTCAGATCTTATGATTCATTCTATACTTGTACAAAAAGAAAAATGAGACAAAGCAGAA
71519212 AGTATCATGCATTTACCAAGCAATTGTTTTCATGTTAAGGGTTAGTTTGTCTACACTAGCATACA
131 AGTATCATGCATTTACCAAGCAATTGTTTTCATGTTAAGGGTTAGTTTGTCTACACTAGCATACA
71519277 TCATACATGTCTTATGAAT
196 TCATACATGTCTTATGAAT
*
71519296 TTGCCTTATGGAACCAGCACTCTTCAGGTTGTTAGTGGCTGCTAGTTAAGTTAGGGGAGAATATT
1 TTGCCTTATGGAACCAGCACTCTTCTGGTTGTTAGTGGCTGCTAGTTAAGTTAGGGGAGAATATT
71519361 GCAGAAATTCAGATCTTATGATTCATTCTATACTTGTACAAAAAGAAAAATGAGACAAAGCAGAA
66 GCAGAAATTCAGATCTTATGATTCATTCTATACTTGTACAAAAAGAAAAATGAGACAAAGCAGAA
71519426 AGTATCATGCATTTACCAAGCAATTGTTTTCATGTTAAGGGTTAGTTTGTCTACACTAGCATACA
131 AGTATCATGCATTTACCAAGCAATTGTTTTCATGTTAAGGGTTAGTTTGTCTACACTAGCATACA
71519491 TCATACATGTCTTATGAAT
196 TCATACATGTCTTATGAAT
71519510 TTGCCTTATGGAACCAGCACTCTTCTGGTTGTTAGTGGCTGCTAGTTAAGTTAGGGGAGAATATT
1 TTGCCTTATGGAACCAGCACTCTTCTGGTTGTTAGTGGCTGCTAGTTAAGTTAGGGGAGAATATT
71519575 GCAGAAATTCAGATCTTATGATTCATTCTATACTTGTACAAAAAGAAAAATGAGACAAAGCAGAA
66 GCAGAAATTCAGATCTTATGATTCATTCTATACTTGTACAAAAAGAAAAATGAGACAAAGCAGAA
71519640 AGTATCATGCATTTACCAAGCAATTGTTTTCATGTTAAGGGTTAGTTTGTCTACACTAGCATACA
131 AGTATCATGCATTTACCAAGCAATTGTTTTCATGTTAAGGGTTAGTTTGTCTACACTAGCATACA
71519705 TCATACATGTCTTATGAAT
196 TCATACATGTCTTATGAAT
71519724 GAAATTGCCA
Statistics
Matches: 426, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
214 426 1.00
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33
Consensus pattern (214 bp):
TTGCCTTATGGAACCAGCACTCTTCTGGTTGTTAGTGGCTGCTAGTTAAGTTAGGGGAGAATATT
GCAGAAATTCAGATCTTATGATTCATTCTATACTTGTACAAAAAGAAAAATGAGACAAAGCAGAA
AGTATCATGCATTTACCAAGCAATTGTTTTCATGTTAAGGGTTAGTTTGTCTACACTAGCATACA
TCATACATGTCTTATGAAT
Found at i:71520369 original size:13 final size:13
Alignment explanation
Indices: 71520351--71520375 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71520341 ACCAAATATT
71520351 ACAATAAATAAAA
1 ACAATAAATAAAA
71520364 ACAATAAATAAA
1 ACAATAAATAAA
71520376 TAAAAGTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (13 bp):
ACAATAAATAAAA
Found at i:71520680 original size:10 final size:11
Alignment explanation
Indices: 71520652--71520685 Score: 50
Period size: 11 Copynumber: 2.9 Consensus size: 11
71520642 TACCCCCAAT
71520652 TAAATAAAAATAG
1 TAAA-AAAAA-AG
71520665 TAAAAAAAAAG
1 TAAAAAAAAAG
71520676 TAAAAAAAAA
1 TAAAAAAAAA
71520686 AAGAAACACC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 12 0.57
12 5 0.24
13 4 0.19
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (11 bp):
TAAAAAAAAAG
Found at i:71525204 original size:30 final size:32
Alignment explanation
Indices: 71525165--71525232 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
71525155 GTCGAGTCAG
*
71525165 AAAA-ATAATTTAATA-T-TTTTTCCGTGTTT
1 AAAATATAATTTAATATTATTTTTCCATGTTT
*
71525194 AAAATATAATTTAATATTATTTTTCCATTTTT
1 AAAATATAATTTAATATTATTTTTCCATGTTT
71525226 AAAATAT
1 AAAATAT
71525233 GTGAACTGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 4 0.12
30 11 0.32
31 1 0.03
32 18 0.53
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (32 bp):
AAAATATAATTTAATATTATTTTTCCATGTTT
Found at i:71527061 original size:28 final size:28
Alignment explanation
Indices: 71527021--71527099 Score: 124
Period size: 28 Copynumber: 2.8 Consensus size: 28
71527011 GCAATCAAAT
* *
71527021 ATGACACTCAGTGTACGAAATATTGAGA
1 ATGACACTTAGTGTGCGAAATATTGAGA
71527049 ATGACACTTAGTGTGC-AAGATATTGAGA
1 ATGACACTTAGTGTGCGAA-ATATTGAGA
71527077 ATGACACTTAGTGTGCGAAATAT
1 ATGACACTTAGTGTGCGAAATAT
71527100 CGAATGATTC
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
27 2 0.04
28 43 0.91
29 2 0.04
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.28
Consensus pattern (28 bp):
ATGACACTTAGTGTGCGAAATATTGAGA
Found at i:71527521 original size:21 final size:22
Alignment explanation
Indices: 71527490--71527533 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
71527480 GAATGTATTG
*
71527490 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
71527512 TGAT-TATGTGCAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
71527533 T
1 T
71527534 AAATGAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.41, C:0.02, G:0.23, T:0.34
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Found at i:71529904 original size:43 final size:43
Alignment explanation
Indices: 71529747--71529905 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
71529737 ATATATAGTA
* * * *
71529747 CAATGCCAACGTCCCAGACGTGGTATTACATGCT-ATCATATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACG-TAATCAAATAT
* * *
71529790 CGATGCC-ACTGTCCCAGACAGGGTCTTACAC-AAATCAAATAT
1 CAATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCAAATAT
* * * *
71529832 -GATGCCGATGTCCCAGACATGGTCTTACACGTAATCACATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATAT
71529874 CAATGCCAACGTCCCAGACATGGTCTTACACG
1 CAATGCCAACGTCCCAGACATGGTCTTACACG
71529906 AGAACACATA
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 26 0.27
42 20 0.21
43 51 0.53
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATAT
Found at i:71532293 original size:39 final size:40
Alignment explanation
Indices: 71532078--71532283 Score: 294
Period size: 40 Copynumber: 5.2 Consensus size: 40
71532068 GATTGATACT
* *
71532078 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAC-AAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TC
*
71532118 CGGGCTAAG-CCCGAAGGCATTTGTGCTAGTTATTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATC
* *
71532157 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATC
* *
71532197 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATC
*
71532237 CGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATATC
71532277 C-GGCTAA
1 CGGGCTAA
71532284 ACTCCGAAGG
Statistics
Matches: 154, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
39 41 0.27
40 113 0.73
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATC
Found at i:71534098 original size:56 final size:56
Alignment explanation
Indices: 71534010--71534146 Score: 229
Period size: 56 Copynumber: 2.4 Consensus size: 56
71534000 GACCATGGGA
71534010 TCGATATATGTGTGTGAGTAAGACCACATTTTATACGTTGGCATCGATATCTGACT
1 TCGATATATGTGTGTGAGTAAGACCACATTTTATACGTTGGCATCGATATCTGACT
* * * *
71534066 TCGATATATTTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATTTGACT
1 TCGATATATGTGTGTGAGTAAGACCACATTTTATACGTTGGCATCGATATCTGACT
*
71534122 CCGATATATGTGTGTGAGTAAGACC
1 TCGATATATGTGTGTGAGTAAGACC
71534147 CTGTCTGGGA
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 74 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (56 bp):
TCGATATATGTGTGTGAGTAAGACCACATTTTATACGTTGGCATCGATATCTGACT
Found at i:71534164 original size:56 final size:56
Alignment explanation
Indices: 71534011--71534171 Score: 164
Period size: 56 Copynumber: 2.9 Consensus size: 56
71534001 ACCATGGGAT
* * * * * *
71534011 CGATATATGTGTGTGAGTAAGACCACATTTTATACGTTGGCATCGATATCTGACTT
1 CGATATATGTGTGCGAGTAAGACCACGTCTGAGACGTTGGCATCGATATCTGACTC
* * * * *
71534067 CGATATATTTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATTTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTCTGAGACGTTGGCATCGATATCTGACTC
* * *
71534123 CGATATATGTGTGTGAGTAAGACC-CTGTCTGGGACAG-TGGCATCAATAT
1 CGATATATGTGTGCGAGTAAGACCAC-GTCTGAGAC-GTTGGCATCGATAT
71534172 GTGATTACAT
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
55 1 0.01
56 89 0.98
57 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTCTGAGACGTTGGCATCGATATCTGACTC
Found at i:71535989 original size:29 final size:29
Alignment explanation
Indices: 71535950--71536029 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
71535940 CTTAATAATC
*
71535950 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
71535980 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
71536009 AGCCCGCACACTTAGTGCCAT
1 AACCCGCACACTTAGTGCCAT
71536030 TCTCTCAACC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 39 0.87
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:71541872 original size:28 final size:28
Alignment explanation
Indices: 71541803--71541903 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
71541793 GACAAGATTG
* * * *
71541803 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
71541833 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71541861 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
71541890 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71541904 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71545103 original size:40 final size:40
Alignment explanation
Indices: 71544998--71545204 Score: 278
Period size: 40 Copynumber: 5.2 Consensus size: 40
71544988 GGATTGATAC
* * *
71544998 CCGGGCTACGTCCCGAAGGCATTTGTGCTAGTGAC-AAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
71545038 CCGGGCTAAG-CCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * *
71545077 CCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * *
71545117 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
71545157 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
71545197 CC-GGCTAA
1 CCGGGCTAA
71545205 ACTCCGAAGG
Statistics
Matches: 152, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 42 0.28
40 110 0.72
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:71545212 original size:119 final size:118
Alignment explanation
Indices: 71544998--71545214 Score: 298
Period size: 119 Copynumber: 1.8 Consensus size: 118
71544988 GGATTGATAC
* * *
71544998 CCGGGCTACGTCCCGAAGGCATTTGTGCTAGTGACAAATTCCGGGCTAAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACAAA-TCCGGGCTAAGCCCGAAGGCATTTGA
*
71545063 GCTAGTTACTATATCCGGGCTAAGTCCCGAAGGAATTTGTGCGAGTTACTATAA
65 GCTAGTTACTATATCCGGGCTAACTCCCGAAGGAATTTGTGCGAGTTACTATAA
* *
71545117 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGAC-A-AATCCGGGCTAAG-CCCGAAGGCATTT
71545181 GAGCTAG-TAGCTATATCC-GGCTAAACT-CCGAAGG
63 GAGCTAGTTA-CTATATCCGGGCT-AACTCCCGAAGG
71545215 TACTTCGTTT
Statistics
Matches: 87, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
119 54 0.62
120 31 0.36
121 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACAAATCCGGGCTAAGCCCGAAGGCATTTGAG
CTAGTTACTATATCCGGGCTAACTCCCGAAGGAATTTGTGCGAGTTACTATAA
Found at i:71547000 original size:56 final size:56
Alignment explanation
Indices: 71546934--71547070 Score: 238
Period size: 56 Copynumber: 2.4 Consensus size: 56
71546924 GACCATGGCA
71546934 TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCGATATCTGACT
1 TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCGATATCTGACT
* *
71546990 TCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATTTGACT
1 TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCGATATCTGACT
* *
71547046 CCGATATATGTGTGTGAGTAAGACC
1 TCGATATATGTGTGCGAGTAAGACC
71547071 CTGTCTGGGA
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 77 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (56 bp):
TCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCGATATCTGACT
Found at i:71549442 original size:2 final size:2
Alignment explanation
Indices: 71549435--71549464 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
71549425 ATATGCATAC
71549435 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71549465 CGACTATACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71556588 original size:40 final size:39
Alignment explanation
Indices: 71556423--71556606 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
71556413 AAATTGAATG
* * *
71556423 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
71556463 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
71556503 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
71556543 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
71556582 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
71556607 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:71556631 original size:80 final size:81
Alignment explanation
Indices: 71556463--71556651 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
71556453 GCTGGAAATT
* * * *
71556463 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
71556528 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
71556544 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
71556607 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
71556623 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
71556652 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:71561087 original size:39 final size:39
Alignment explanation
Indices: 71561033--71561145 Score: 174
Period size: 39 Copynumber: 2.9 Consensus size: 39
71561023 TATGGTAACC
** *
71561033 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAA-T
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
*
71561072 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
71561111 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
71561146 TCGAACATTC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
38 17 0.25
39 51 0.75
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:71561124 original size:78 final size:78
Alignment explanation
Indices: 71561002--71561145 Score: 200
Period size: 78 Copynumber: 1.8 Consensus size: 78
71560992 TCGTTCAAAC
* **
71561002 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGG-CTTAACCCGGATATC
71561067 ACAATCGCACAATT
65 ACAATCGCACAATT
* * ** *
71561081 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGCTTAACCCGGATATCA
71561145 C
66 C
71561146 TCGAACATTC
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
77 16 0.28
78 32 0.56
79 9 0.16
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.22
Consensus pattern (78 bp):
GCCTTCGGGACATAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGCTTAACCCGGATATCA
CAATCGCACAATT
Found at i:71568520 original size:40 final size:40
Alignment explanation
Indices: 71568475--71568604 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
71568465 CGGAATACAA
71568475 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
71568515 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
71568555 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
71568595 CCGGATATAA
1 CCGGATATAA
71568605 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:71568619 original size:40 final size:40
Alignment explanation
Indices: 71568475--71568637 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
71568465 CGGAATACAA
* **
71568475 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
71568515 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
71568555 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
71568595 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
71568634 CCGG
1 CCGG
71568638 GTATCATTCA
Statistics
Matches: 100, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
39 11 0.11
40 89 0.89
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:71578253 original size:40 final size:40
Alignment explanation
Indices: 71578208--71578337 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
71578198 CGGAATACAA
71578208 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
71578248 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
71578288 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
71578328 CCGGATATAA
1 CCGGATATAA
71578338 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:71578352 original size:40 final size:40
Alignment explanation
Indices: 71578208--71578371 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
71578198 CGGAATACAA
* **
71578208 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
71578248 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
71578288 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
71578328 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
71578368 CCGG
1 CCGG
71578372 TATCATTCAA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:71582027 original size:40 final size:40
Alignment explanation
Indices: 71581963--71582073 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
71581953 GCTACTCGTT
* * * ***
71581963 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
71582003 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
71582043 CAATTGCCTTCGGG-CTTAGCCCGGATATCAC
1 CAAATGCCTTCGGGACTTAGCCCGGATATCAC
71582074 TCGAACATTC
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 16 0.26
40 45 0.74
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.21
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:71589344 original size:28 final size:28
Alignment explanation
Indices: 71589297--71589360 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
71589287 AAATTAACCC
*
71589297 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
71589325 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
71589353 TAGGGGTA
1 TAGGGGTA
71589361 CTCTAGTACA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:71591765 original size:56 final size:56
Alignment explanation
Indices: 71591632--71591765 Score: 232
Period size: 56 Copynumber: 2.4 Consensus size: 56
71591622 TCCCAGATAG
* *
71591632 GGTCTTACTCGCACACATATAACAGAATCACATATCGATACCAACGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATACCAACATATTAAACGT
*
71591688 GGTCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCAGAATCACATATCGATACCAACATATTAAACGT
*
71591744 GGTCTTACTCACACACATATAT
1 GGTCTTACTCGCACACATATAT
71591766 TCATGCCATG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAGAATCACATATCGATACCAACATATTAAACGT
Found at i:71601342 original size:123 final size:123
Alignment explanation
Indices: 71601123--71601415 Score: 541
Period size: 123 Copynumber: 2.4 Consensus size: 123
71601113 GAATTATGTG
71601123 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAAAGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAAAGGTACCCGG
*
71601188 GCTAAGTTCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* *
71601246 AAATGAAATAAGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAAAGGTACCCGG
71601311 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* *
71601369 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAG
71601416 CAATGTGTGC
Statistics
Matches: 164, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 164 1.00
ACGTcount: A:0.31, C:0.09, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAAAGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:71601423 original size:15 final size:15
Alignment explanation
Indices: 71601403--71601434 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
71601393 TTATTGATTT
71601403 ATGTGTGCATGAGCA
1 ATGTGTGCATGAGCA
71601418 ATGTGTGCATGAGCA
1 ATGTGTGCATGAGCA
71601433 AT
1 AT
71601435 TGAATGATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.31, T:0.28
Consensus pattern (15 bp):
ATGTGTGCATGAGCA
Found at i:71601646 original size:40 final size:40
Alignment explanation
Indices: 71601445--71601648 Score: 212
Period size: 40 Copynumber: 5.1 Consensus size: 40
71601435 TGAATGATAC
* * ** * **
71601445 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
* * ** *
71601485 CCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGGTTATAT
* *
71601525 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
* * * *
71601565 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
* *
71601605 CCGGGCTAAGACCCGAAGGCATTCGTTCATGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
71601645 CCGG
1 CCGG
71601649 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
39 3 0.02
40 132 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTATAT
Found at i:71609009 original size:122 final size:123
Alignment explanation
Indices: 71608703--71609039 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
71608693 GAATTATGTG
71608703 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCC-G
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
71608767 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
71608825 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
71608890 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
* * * * *
71608948 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTG-ATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
71609012 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
71609040 AATTATATCC
Statistics
Matches: 207, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
122 99 0.48
123 108 0.52
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGATATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:71609063 original size:40 final size:40
Alignment explanation
Indices: 71609008--71609189 Score: 186
Period size: 40 Copynumber: 4.6 Consensus size: 40
71608998 TTGATGATAC
* * *
71609008 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTAATTATAT
* * * * * * *
71609048 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTACAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTAATTATAT
* ** *
71609088 CCGGGCTAAGACCCGAAGGCATTCATGCAAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTAATTATAT
* * ** *
71609128 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCTAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCAAGTAATTATAT
71609168 CCGGGCTAAGACCCG-AGGCATT
1 CCGGGCTAAGACCCGAAGGCATT
71609190 CGTGCATGTG
Statistics
Matches: 118, Mismatches: 24, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
39 7 0.06
40 111 0.94
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCAAGTAATTATAT
Found at i:71609142 original size:80 final size:80
Alignment explanation
Indices: 71609008--71609210 Score: 232
Period size: 80 Copynumber: 2.5 Consensus size: 80
71608998 TTGATGATAC
* * * * * *
71609008 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAATTG
1 CCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
*
71609073 TGCTAGT-G-ACTACAT
66 TGCAAGTCGTACT--AT
* * * *
71609088 CCGGGCTAAGACCCGAAGGCATTCATGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
*
71609153 TGCAAGTCGTTCTAT
66 TGCAAGTCGTACTAT
* * *
71609168 CCGGGCTAAGACCCG-AGGCATTCGTGCATGTGGTTATATCCGG
1 CCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGG
71609211 TTGTATTCCG
Statistics
Matches: 105, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 24 0.23
80 78 0.74
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTCATGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAATTG
TGCAAGTCGTACTAT
Found at i:71611745 original size:41 final size:40
Alignment explanation
Indices: 71611682--71611855 Score: 173
Period size: 41 Copynumber: 4.4 Consensus size: 40
71611672 AAAGTTTAAT
* *
71611682 AATAGTGGCGTTTTTAGACCAAATGTCGCTAAAAGTTGAG-
1 AATAGTGGCGTTTTTGGTCCAAATG-CGCTAAAAGTTGAGC
*
71611722 ATATAGTGGCGTTTTTGGTCCAAACGCTGCTAAACA-TTGAGC
1 A-ATAGTGGCGTTTTTGGTCCAAATGC-GCTAAA-AGTTGAGC
* * *
71611764 AATAGTGGCATTATTGGTCCAAATGCCGCTAAAAGCTGAGC
1 AATAGTGGCGTTTTTGGTCCAAATG-CGCTAAAAGTTGAGC
*
71611805 AATAGTGGCGTTTTTGGT-CAAA---AC-AAAAGGTTGAGC
1 AATAGTGGCGTTTTTGGTCCAAATGCGCTAAAA-GTTGAGC
*
71611841 AATAGTGGCATTTTT
1 AATAGTGGCGTTTTT
71611856 TATCCAAACG
Statistics
Matches: 115, Mismatches: 12, Indels: 18
0.79 0.08 0.12
Matches are distributed among these distances:
35 4 0.03
36 21 0.18
40 7 0.06
41 80 0.70
42 3 0.03
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (40 bp):
AATAGTGGCGTTTTTGGTCCAAATGCGCTAAAAGTTGAGC
Found at i:71612399 original size:14 final size:14
Alignment explanation
Indices: 71612380--71612505 Score: 85
Period size: 14 Copynumber: 8.8 Consensus size: 14
71612370 AATTTTGTAT
71612380 CCCTAAACCTTAAA
1 CCCTAAACCTTAAA
71612394 CCCTAAA-CTCTAAA
1 CCCTAAACCT-TAAA
*
71612408 CCCTAAACTTTAAA
1 CCCTAAACCTTAAA
* * *
71612422 CTCTAAGCCCTAAA
1 CCCTAAACCTTAAA
*
71612436 CCCTAAACATTAAA
1 CCCTAAACCTTAAA
* ** *
71612450 TCCTAAAGAATAAAA
1 CCCTAAA-CCTTAAA
*
71612465 CCCTAAACAC-TAGA
1 CCCTAAAC-CTTAAA
*
71612479 CACTAAACCCTTAAA
1 CCCTAAA-CCTTAAA
*
71612494 CCTTTAAACCTT
1 CC-CTAAACCTT
71612506 TAAATCTAAA
Statistics
Matches: 84, Mismatches: 21, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
13 2 0.02
14 57 0.68
15 21 0.25
16 4 0.05
ACGTcount: A:0.44, C:0.31, G:0.02, T:0.23
Consensus pattern (14 bp):
CCCTAAACCTTAAA
Found at i:71612408 original size:21 final size:21
Alignment explanation
Indices: 71612382--71612545 Score: 89
Period size: 21 Copynumber: 7.6 Consensus size: 21
71612372 TTTTGTATCC
*
71612382 CTAAACCTTAAACCCTAAACT
1 CTAAACCCTAAACCCTAAACT
**
71612403 CTAAACCCTAAACTTTAAACT
1 CTAAACCCTAAACCCTAAACT
*
71612424 CTAAGCCCTAAACCCTAAACAT
1 CTAAACCCTAAACCCTAAAC-T
* *** *
71612446 -TAAATCCTAAAGAATAAAACC
1 CTAAACCCTAAACCCT-AAACT
* * * *
71612467 CTAAACACTAGACACTAAACC
1 CTAAACCCTAAACCCTAAACT
* *
71612488 CTTAAACCTTTAAACCTTTAAA-T
1 C-TAAACC-CTAAACC-CTAAACT
* *
71612511 CTAAAGTCCTAAACTCTAAAACT
1 CTAAA-CCCTAAACCCT-AAACT
*
71612534 CTAAACCTTAAA
1 CTAAACCCTAAA
71612546 AATAAATTTC
Statistics
Matches: 105, Mismatches: 29, Indels: 17
0.70 0.19 0.11
Matches are distributed among these distances:
21 52 0.50
22 37 0.35
23 12 0.11
24 4 0.04
ACGTcount: A:0.45, C:0.28, G:0.02, T:0.24
Consensus pattern (21 bp):
CTAAACCCTAAACCCTAAACT
Found at i:71616401 original size:9 final size:9
Alignment explanation
Indices: 71616383--71616550 Score: 130
Period size: 9 Copynumber: 18.9 Consensus size: 9
71616373 ATGATAATCG
71616383 TAACTTACA
1 TAACTTACA
*
71616392 TAAGTTACA
1 TAACTTACA
71616401 TAACTTACA
1 TAACTTACA
71616410 TAACTTACA
1 TAACTTACA
* *
71616419 TAA-ATATA
1 TAACTTACA
* *
71616427 TATCATATCA
1 TAACTTA-CA
71616437 TAACTTACA
1 TAACTTACA
71616446 TAACTTACA
1 TAACTTACA
71616455 TAA--TACA
1 TAACTTACA
* *
71616462 TAA-ATAAA
1 TAACTTACA
* *
71616470 TATCATATCA
1 TAACTTA-CA
71616480 TAACTTACA
1 TAACTTACA
* *
71616489 TAAGTTATA
1 TAACTTACA
71616498 TAACTTACA
1 TAACTTACA
*
71616507 TAACGTACA
1 TAACTTACA
* *
71616516 TAA-ATATA
1 TAACTTACA
* *
71616524 TATCATATCA
1 TAACTTA-CA
71616534 TAACTTACA
1 TAACTTACA
71616543 TAACTTAC
1 TAACTTAC
71616551 GTAATACATA
Statistics
Matches: 128, Mismatches: 24, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
7 7 0.05
8 15 0.12
9 88 0.69
10 18 0.14
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.35
Consensus pattern (9 bp):
TAACTTACA
Found at i:71616447 original size:54 final size:53
Alignment explanation
Indices: 71616383--71616550 Score: 221
Period size: 54 Copynumber: 3.3 Consensus size: 53
71616373 ATGATAATCG
71616383 TAACTTACATAAGTTACATAACTTACATAACTTACATAAATATATATCATATCA
1 TAACTTACATAAGTTACATAACTTACATAAC-TACATAAATATATATCATATCA
*
71616437 T-A---AC-----TTACATAACTTACATAA-TACATAAATAAATATCATATCA
1 TAACTTACATAAGTTACATAACTTACATAACTACATAAATATATATCATATCA
*
71616480 TAACTTACATAAGTTATATAACTTACATAACGTACATAAATATATATCATATCA
1 TAACTTACATAAGTTACATAACTTACATAAC-TACATAAATATATATCATATCA
*
71616534 TAACTTACATAACTTAC
1 TAACTTACATAAGTTAC
71616551 GTAATACATA
Statistics
Matches: 98, Mismatches: 5, Indels: 22
0.78 0.04 0.18
Matches are distributed among these distances:
43 22 0.22
44 1 0.01
45 17 0.17
47 2 0.02
50 2 0.02
52 16 0.16
53 1 0.01
54 37 0.38
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.35
Consensus pattern (53 bp):
TAACTTACATAAGTTACATAACTTACATAACTACATAAATATATATCATATCA
Found at i:71616492 original size:97 final size:98
Alignment explanation
Indices: 71616368--71616564 Score: 342
Period size: 97 Copynumber: 2.0 Consensus size: 98
71616358 AGTTAAAAAT
* * *
71616368 TAAATATGATAATCGTAACTTACATAAGTTACATAACTTACATAACTTACATAAATATATATCAT
1 TAAATATCATAATCATAACTTACATAAGTTACATAACTTACATAACGTACATAAATATATATCAT
71616433 ATCATAACTTACATAACTTACATAATACATAAA
66 ATCATAACTTACATAACTTACATAATACATAAA
*
71616466 TAAATATCAT-ATCATAACTTACATAAGTTATATAACTTACATAACGTACATAAATATATATCAT
1 TAAATATCATAATCATAACTTACATAAGTTACATAACTTACATAACGTACATAAATATATATCAT
*
71616530 ATCATAACTTACATAACTTACGTAATACATAAA
66 ATCATAACTTACATAACTTACATAATACATAAA
71616563 TA
1 TA
71616565 TATACTTATA
Statistics
Matches: 94, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
97 85 0.90
98 9 0.10
ACGTcount: A:0.48, C:0.15, G:0.03, T:0.34
Consensus pattern (98 bp):
TAAATATCATAATCATAACTTACATAAGTTACATAACTTACATAACGTACATAAATATATATCAT
ATCATAACTTACATAACTTACATAATACATAAA
Found at i:71616568 original size:43 final size:44
Alignment explanation
Indices: 71616390--71616568 Score: 218
Period size: 43 Copynumber: 3.9 Consensus size: 44
71616380 TCGTAACTTA
*
71616390 CATAAGTTACATAACTTACATAACTTACATAAATATATATCATAT
1 CATAACTTACATAACTTACATAAC-TACATAAATATATATCATAT
*
71616435 CATAACTTACATAACTTACATAA-TACATAAATAAATATCATAT
1 CATAACTTACATAACTTACATAACTACATAAATATATATCATAT
71616478 CATAACTTACATAAGTTATATAACTTACATAACGTACATAAATATATATCATAT
1 CATAACTTAC---------ATAACTTACATAAC-TACATAAATATATATCATAT
*
71616532 CATAACTTACATAACTTACGTAA-TACATAAATATATA
1 CATAACTTACATAACTTACATAACTACATAAATATATA
71616569 CTTATAAAAA
Statistics
Matches: 119, Mismatches: 4, Indels: 24
0.81 0.03 0.16
Matches are distributed among these distances:
43 43 0.36
45 34 0.29
52 13 0.11
54 29 0.24
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (44 bp):
CATAACTTACATAACTTACATAACTACATAAATATATATCATAT
Found at i:71616603 original size:97 final size:95
Alignment explanation
Indices: 71616384--71616588 Score: 266
Period size: 97 Copynumber: 2.1 Consensus size: 95
71616374 TGATAATCGT
* *
71616384 AACTTACATAAGTTACATAACTTACATAACTTACATAAATATATATCATATCATAACTTACATAA
1 AACTTACATAA--TATATAACTTACATAACGTACATAAATATATATCATATCATAACTTACATAA
* * ** *
71616449 CTTACATAATACATAAATAAATATCATATCAT
64 CTTACATAATACATAAATAAATATAAAAAAAC
71616481 AACTTACATAAGTTATATAACTTACATAACGTACATAAATATATATCATATCATAACTTACATAA
1 AACTTACATAA--TATATAACTTACATAACGTACATAAATATATATCATATCATAACTTACATAA
*
71616546 CTTACGTAATACATAAATATATACTTATAAAAAAAC
64 CTTACATAATACATAAATA-A-A--TATAAAAAAAC
71616582 AACTTAC
1 AACTTAC
71616589 CTAAATTAGT
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
97 81 0.84
98 1 0.01
99 1 0.01
101 13 0.14
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (95 bp):
AACTTACATAATATATAACTTACATAACGTACATAAATATATATCATATCATAACTTACATAACT
TACATAATACATAAATAAATATAAAAAAAC
Done.