Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 235 of 425
Found at i:71616623 original size:7 final size:7
Alignment explanation
Indices: 71616611--71616635 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
71616601 ACACCCATTA
71616611 GATACTT
1 GATACTT
71616618 GATACTT
1 GATACTT
71616625 GATACTT
1 GATACTT
71616632 GATA
1 GATA
71616636 TGTATTACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (7 bp):
GATACTT
Found at i:71617350 original size:25 final size:25
Alignment explanation
Indices: 71617312--71617379 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
71617302 TATCATTTAG
* *
71617312 ATTTGCTGTTTTTGGTTGGATATGT
1 ATTTGTTGTTTTTGGTTGGATATAT
* *
71617337 ATTTGTTGTCTTTGGTTGGATTTAT
1 ATTTGTTGTTTTTGGTTGGATATAT
71617362 ATTTGTTGTTTTTGGTTG
1 ATTTGTTGTTTTTGGTTG
71617380 TTACAGGAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.10, C:0.03, G:0.26, T:0.60
Consensus pattern (25 bp):
ATTTGTTGTTTTTGGTTGGATATAT
Found at i:71625598 original size:35 final size:35
Alignment explanation
Indices: 71625553--71625620 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
71625543 CACCCTTCAA
*
71625553 CTCTCCTTTCTTCTTCC-CTTTTTCCACCTTCCCTT
1 CTCTCATTTCTTCTTCCTCTTTTTCC-CCTTCCCTT
*
71625588 CTCTCATTTCTTTTTCCTTCTTTTTCCCCTTCC
1 CTCTCATTTCTTCTTCC-TCTTTTTCCCCTTCC
71625621 ACCACAACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
35 15 0.52
36 6 0.21
37 8 0.28
ACGTcount: A:0.03, C:0.43, G:0.00, T:0.54
Consensus pattern (35 bp):
CTCTCATTTCTTCTTCCTCTTTTTCCCCTTCCCTT
Found at i:71631645 original size:93 final size:93
Alignment explanation
Indices: 71631486--71631676 Score: 364
Period size: 93 Copynumber: 2.1 Consensus size: 93
71631476 ACTCTTATTT
71631486 CCATTCTCTACCATATTTCCCATTATTTTCTCTCATTTCACTTCACTAATATATCAAGAACATGG
1 CCATTCTCTACCATATTTCCCATTATTTTCTCTCATTTCACTTCACTAATATATCAAGAACATGG
71631551 ATCCTTATAAGAAAACTCTACCTTAACA
66 ATCCTTATAAGAAAACTCTACCTTAACA
*
71631579 CCATTCTCTACCATATTTCCCATTATTTTCTCTCATTTCGCTTCACTAATATATCAAGAACATGG
1 CCATTCTCTACCATATTTCCCATTATTTTCTCTCATTTCACTTCACTAATATATCAAGAACATGG
71631644 ATCCTTATAAGAAAACTCTACCTTAACA
66 ATCCTTATAAGAAAACTCTACCTTAACA
*
71631672 TCATT
1 CCATT
71631677 TTCATGCTGT
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 96 1.00
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.37
Consensus pattern (93 bp):
CCATTCTCTACCATATTTCCCATTATTTTCTCTCATTTCACTTCACTAATATATCAAGAACATGG
ATCCTTATAAGAAAACTCTACCTTAACA
Found at i:71632085 original size:31 final size:31
Alignment explanation
Indices: 71632026--71632101 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 31
71632016 ACACACATAT
*
71632026 ATATACTAAATAAAATAATAAACTAATAATAA
1 ATAT-CTAATTAAAATAATAAACTAATAATAA
* *
71632058 ATATCTTATTAAAATATTAAA-TAAATAATAA
1 ATATCTAATTAAAATAATAAACT-AATAATAA
*
71632089 TTATCTAATTAAA
1 ATATCTAATTAAA
71632102 TAGCTATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
30 1 0.03
31 33 0.87
32 4 0.11
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (31 bp):
ATATCTAATTAAAATAATAAACTAATAATAA
Found at i:71637186 original size:23 final size:23
Alignment explanation
Indices: 71637141--71637187 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
71637131 TCAAAGAATG
* *
71637141 ATTGTTACGCCATTGACAGGGAA
1 ATTGTTACACCATTGACAAGGAA
*
71637164 ATTGTTACACCATTGATAAGGAA
1 ATTGTTACACCATTGACAAGGAA
71637187 A
1 A
71637188 CTTTGAAGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (23 bp):
ATTGTTACACCATTGACAAGGAA
Found at i:71647615 original size:24 final size:25
Alignment explanation
Indices: 71647587--71647636 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 25
71647577 ACTACCAATA
71647587 CCACCACACTAAGATCTAAAGCAAG
1 CCACCACACTAAGATCTAAAGCAAG
*
71647612 CACCACCACACTGAGATCTAAAGCA
1 --CCACCACACTAAGATCTAAAGCA
71647637 CCTATGACTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.34, G:0.12, T:0.12
Consensus pattern (25 bp):
CCACCACACTAAGATCTAAAGCAAG
Found at i:71652101 original size:17 final size:17
Alignment explanation
Indices: 71652079--71652112 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
71652069 TGAGATGTGA
71652079 TTACATGTAAGACCATG
1 TTACATGTAAGACCATG
71652096 TTACATGTAAGACCATG
1 TTACATGTAAGACCATG
71652113 CCTGAGGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (17 bp):
TTACATGTAAGACCATG
Found at i:71652177 original size:43 final size:43
Alignment explanation
Indices: 71652101--71652195 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
71652091 CCATGTTACA
* * * * *
71652101 TGTAAGACCATGCCTGAGGCATTTGTATTGTATTGTGAGTAT-G
1 TGTAAGACCATGCCTGAGACATTGGCATCGTATTATGA-TATCG
* *
71652144 TGTAAGACCATGTCTGAGACATTGGCATCGTATTATGATTTCG
1 TGTAAGACCATGCCTGAGACATTGGCATCGTATTATGATATCG
71652187 TGTAAGACC
1 TGTAAGACC
71652196 CTATTTGGGA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 2 0.05
43 42 0.95
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (43 bp):
TGTAAGACCATGCCTGAGACATTGGCATCGTATTATGATATCG
Found at i:71668053 original size:70 final size:71
Alignment explanation
Indices: 71667971--71668133 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
71667961 GAGATGTATC
71667971 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGT-GCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71668035 AGGACA
66 AGGACA
71668041 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
71668106 AGGACA
66 AGGACA
71668112 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
71668134 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 36 0.39
71 56 0.61
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:71672397 original size:27 final size:27
Alignment explanation
Indices: 71672358--71672458 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 27
71672348 GGTCGTTAAG
* *
71672358 ACCCCCGATTTGTAAAATTACTGAAAT
1 ACCCCCAATTTGTAAAATTACCGAAAT
* *
71672385 ACCCCCGAGTTGTAAAATTACCGAAAT
1 ACCCCCAATTTGTAAAATTACCGAAAT
* * *
71672412 ACCCCTAATTTATGAAATTACCGAAAT
1 ACCCCCAATTTGTAAAATTACCGAAAT
*
71672439 A-CCTCAATTTGTAAAATTAC
1 ACCCCCAATTTGTAAAATTAC
71672459 TAAAATACTC
Statistics
Matches: 63, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 15 0.24
27 48 0.76
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (27 bp):
ACCCCCAATTTGTAAAATTACCGAAAT
Found at i:71672492 original size:27 final size:27
Alignment explanation
Indices: 71672476--71672565 Score: 153
Period size: 27 Copynumber: 3.3 Consensus size: 27
71672466 CTCTTGTAGA
* * *
71672476 GTAAAATGACCGTAATATCCCTGTAGG
1 GTAAAATGACCATAATACCCCTGTATG
71672503 GTAAAATGACCATAATACCCCTGTATG
1 GTAAAATGACCATAATACCCCTGTATG
71672530 GTAAAATGACCATAATACCCCTGTATG
1 GTAAAATGACCATAATACCCCTGTATG
71672557 GTAAAATGA
1 GTAAAATGA
71672566 TGATTATGCC
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
GTAAAATGACCATAATACCCCTGTATG
Found at i:71672764 original size:27 final size:26
Alignment explanation
Indices: 71672734--71672784 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
71672724 CATTCACTGT
*
71672734 TACTGGTGGCTATGCTACAATTACTAA
1 TACTGGTGGCT-TGCCACAATTACTAA
*
71672761 TACTGGTGGCTTGCCACATTTACT
1 TACTGGTGGCTTGCCACAATTACT
71672785 GTTTCTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
TACTGGTGGCTTGCCACAATTACTAA
Found at i:71685804 original size:34 final size:34
Alignment explanation
Indices: 71685744--71685809 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
71685734 ATCTCAGCTA
* *
71685744 GGGCCTTAGCCCATTACAGTATCAGTACCAGTTT
1 GGGCCTAAGCCCATTACAGTATCAGTAACAGTTT
71685778 GGGCCTAAGCCCATCT-CAGTCA-CAGTAACAGT
1 GGGCCTAAGCCCAT-TACAGT-ATCAGTAACAGT
71685810 ATAGTTATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 26 0.93
35 2 0.07
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (34 bp):
GGGCCTAAGCCCATTACAGTATCAGTAACAGTTT
Found at i:71686131 original size:27 final size:27
Alignment explanation
Indices: 71686096--71686149 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
71686086 AATCATACAG
* * *
71686096 CACATAGGGGCATAACAGTCATTTTAT
1 CACAGAGGGACATAACAATCATTTTAT
71686123 CACAGAGGGACATAACAATCATTTTAT
1 CACAGAGGGACATAACAATCATTTTAT
71686150 TAATTAAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (27 bp):
CACAGAGGGACATAACAATCATTTTAT
Found at i:71697007 original size:34 final size:34
Alignment explanation
Indices: 71696947--71697012 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
71696937 GTCTCAGTGA
* *
71696947 GGGCCTTAGCCCATTACAGTATCAGTATCAGTTT
1 GGGCCTGAGCCCATTACAGTATCAGTAACAGTTT
71696981 GGGCCTGAGCCCATCT-CAGTCA-CAGTAACAGT
1 GGGCCTGAGCCCAT-TACAGT-ATCAGTAACAGT
71697013 ACAGTTATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 26 0.93
35 2 0.07
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (34 bp):
GGGCCTGAGCCCATTACAGTATCAGTAACAGTTT
Found at i:71697469 original size:17 final size:18
Alignment explanation
Indices: 71697438--71697472 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
71697428 CATATTGTAG
71697438 GCCTGTGTGGGCCCACAC
1 GCCTGTGTGGGCCCACAC
71697456 GCCTGTGT-GGCCCACAC
1 GCCTGTGTGGGCCCACAC
71697473 AGCCCATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.11, C:0.40, G:0.31, T:0.17
Consensus pattern (18 bp):
GCCTGTGTGGGCCCACAC
Found at i:71707852 original size:46 final size:46
Alignment explanation
Indices: 71707703--71707876 Score: 136
Period size: 46 Copynumber: 3.7 Consensus size: 46
71707693 ATTTGTGTGT
* * * * *** *
71707703 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCA-CCTTATGA
1 GAGCCAGTGTAAGATATGTCTGGGACATGCATC-ACCATCGAGACGA
* * * *
71707749 GAGCAAGTGCAAGATCATGTCTGGGACATGGCATCAGCATTGAGACGA
1 GAGCCAGTGTAAGAT-ATGTCTGGGACAT-GCATCACCATCGAGACGA
* * *
71707797 GAGCTAGTGTAAGATATGTCTGGGACATGCATCACCCTCGAGACTTA
1 GAGCCAGTGTAAGATATGTCTGGGACATGCATCACCATCGAGAC-GA
* * *
71707844 -AGCCAGTGTGAGACATATCTGGGACATGCATCA
1 GAGCCAGTGTAAGATATGTCTGGGACATGCATCA
71707877 GCTACGAGAT
Statistics
Matches: 103, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 54 0.52
47 28 0.27
48 21 0.20
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGATATGTCTGGGACATGCATCACCATCGAGACGA
Found at i:71707898 original size:46 final size:46
Alignment explanation
Indices: 71707704--71707970 Score: 181
Period size: 47 Copynumber: 5.7 Consensus size: 46
71707694 TTTGTGTGTG
* * * ***
71707704 AGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCACCTTATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCAGCTACGAGATGA
* * * *
71707749 GAGCAAGTGCAAGATCATGTCTGGGACATGGCATCAGC-ATTGAGACGA
1 -AGCTAGTGTAAGA-CATGTCTGGGACATGGCATCAGCTA-CGAGATGA
* * *
71707797 GAGCTAGTGTAAGATATGTCTGGGACAT-GCATCACCCT-CGAGACTTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGGCATCA-GCTACGAGA-TGA
* * *
71707844 AGCCAGTGTGAGACATATCTGGGACAT-GCATCAGCTACGAGATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCAGCTACGAGATGA
* * *
71707889 TAGTTAGTGTAAGACCATGCCTGGGACATGGCATC-GACT-TGAGAT-A
1 -AGCTAGTGTAAGA-CATGTCTGGGACATGGCATCAG-CTACGAGATGA
* *
71707935 TGAGCCAGTGTAGGACCATGTCTGGGACATGGCATC
1 --AGCTAGTGTAAGA-CATGTCTGGGACATGGCATC
71707971 GGCACCTTAC
Statistics
Matches: 176, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
45 4 0.02
46 66 0.38
47 77 0.44
48 29 0.16
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGGCATCAGCTACGAGATGA
Found at i:71707941 original size:93 final size:93
Alignment explanation
Indices: 71707768--71707970 Score: 220
Period size: 93 Copynumber: 2.2 Consensus size: 93
71707758 CAAGATCATG
* * *
71707768 TCTGGGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGATATGTCTGGGACATGCATCACC
1 TCTGGGACATGGCATCAGCATCGAGACGAGAGCTAGTGTAAGACATGCCTGGGACATGCATCA-C
71707833 CTCGAGACTTAAGCCAGTGT-GAGA-CATA
65 CTCGAGACTTAAGCCAGTGTAG-GACCATA
* * *
71707861 TCTGGGACAT-GCATCAGC-TACGAGATGATAGTTAGTGTAAGACCATGCCTGGGACATGGCATC
1 TCTGGGACATGGCATCAGCAT-CGAGACGAGAGCTAGTGTAAGA-CATGCCTGGGACAT-GCATC
* * *
71707924 GA-CTTGAGA-TATGAGCCAGTGTAGGACCATG
63 -ACCTCGAGACT-TAAGCCAGTGTAGGACCATA
71707955 TCTGGGACATGGCATC
1 TCTGGGACATGGCATC
71707971 GGCACCTTAC
Statistics
Matches: 93, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
91 1 0.01
92 27 0.29
93 40 0.43
94 19 0.20
95 6 0.06
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
TCTGGGACATGGCATCAGCATCGAGACGAGAGCTAGTGTAAGACATGCCTGGGACATGCATCACC
TCGAGACTTAAGCCAGTGTAGGACCATA
Found at i:71715045 original size:46 final size:48
Alignment explanation
Indices: 71714978--71715149 Score: 178
Period size: 47 Copynumber: 3.7 Consensus size: 48
71714968 GACAAGAGCT
* * *
71714978 AGTGTAAGA-TATGTTTGGGACAT-GCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTAAGCC
* *
71715024 AGTGTGAGA-CATGTCTAGGACAT-GCATCGG-CTGCGAGATG-ATAGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCT-CGAGATGTA-AGCC
* * * * *
71715070 AGTGTAAGACCATGTCTAGGACATGGCAT-TGACTTGAGATATGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTAAGCC
*
71715117 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGGC
71715150 ACCTTACCCA
Statistics
Matches: 105, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 3 0.03
46 44 0.42
47 51 0.49
48 7 0.07
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAGATGTAAGCC
Found at i:71715109 original size:47 final size:48
Alignment explanation
Indices: 71714925--71715147 Score: 174
Period size: 47 Copynumber: 4.8 Consensus size: 48
71714915 CACCTTATGA
* * * * * * * *
71714925 GAGCTAGTGTAAGATCATGTCTGGGACATGGGATCAACAT-TGAGACAA
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC-TGCGAGATAT
* * * * * *
71714973 GAGCTAGTGTAAGA-TATGTTTGGGACAT-GCATCGGCCT-CGAGATGT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACTGCGAGATAT
* * *
71715019 AAGCCAGTGTGAGA-CATGTCTAGGACAT-GCATCGGCTGCGAGATGAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTGCGAGAT-AT
* * *
71715066 -AGTCAGTGTAAGACCATGTCTAGGACATGGCATTGACT-TGAGATAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTGCGAGATAT
*
71715112 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
71715148 GCACCTTACC
Statistics
Matches: 144, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
45 3 0.02
46 55 0.38
47 65 0.45
48 21 0.15
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTGCGAGATAT
Found at i:71715137 original size:140 final size:141
Alignment explanation
Indices: 71714884--71715149 Score: 331
Period size: 140 Copynumber: 1.9 Consensus size: 141
71714874 TGATTGAGCT
* ** * *
71714884 AGTGTAAGACATGTCTGGGACATGCATCGGCCACCTTATGAGAGCTAGTGTAAGATCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCACCAGATGAGAGCTAGTGTAAGACCATGTCTAG
* * * *
71714949 GACATGGGATCAACATTGAGACAAGAGCTAGTGTAAGATATGTTTGGGACAT-GCATCGGCCTCG
66 GACATGGCATCAACATTGAGACAAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
71715013 AGATGTAAGCC
131 AGATGTAAGCC
* ** * *
71715024 AGTGTGAGACATGTCTAGGACATGCATCGGCTGCGAGATGATAG-TCAGTGTAAGACCATGTCTA
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCACCAGATGAGAGCT-AGTGTAAGACCATGTCTA
** * *
71715088 GGACATGGCATTGAC-TTGAGATATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65 GGACATGGCATCAACATTGAGACAAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC
71715150 ACCTTACCCA
Statistics
Matches: 105, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
139 21 0.20
140 76 0.72
141 8 0.08
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCACCAGATGAGAGCTAGTGTAAGACCATGTCTAG
GACATGGCATCAACATTGAGACAAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
AGATGTAAGCC
Found at i:71727274 original size:55 final size:54
Alignment explanation
Indices: 71727119--71727314 Score: 175
Period size: 53 Copynumber: 3.6 Consensus size: 54
71727109 TTCCTTTTTA
* * * * *
71727119 AACTTACCATTTCCATGTCTTGATATGGTCTTACGTG-TTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATTA-CCTTGCCTTATAG
* * * * *
71727172 AACTCACCATTGACATGCCTTGGCATGGTCTTACATGGGA-T-CTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT--GATTACCTTGCCTTATAG
** * * *
71727226 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTACCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATTACCTTGCCTTATAG
* *
71727281 AACTTACCAATGTCATGCCTTGGCATGGTCTTAC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTAC
71727315 TTGGTATCCT
Statistics
Matches: 112, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
53 41 0.37
54 30 0.27
55 41 0.37
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGATTACCTTGCCTTATAG
Found at i:71734076 original size:26 final size:26
Alignment explanation
Indices: 71734004--71734077 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
71733994 TATACTGATT
* *
71734004 CTGGCAACTTTGCTACGTTACTATTA
1 CTGGCAACTTTGCTACGATATTATTA
* * *
71734030 CTAGCAACTCTGCTGCGATATTATTA
1 CTGGCAACTTTGCTACGATATTATTA
*
71734056 CTGGCAGCTTTGCTACGATATT
1 CTGGCAACTTTGCTACGATATT
71734078 GGTGTGTTGG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (26 bp):
CTGGCAACTTTGCTACGATATTATTA
Found at i:71744612 original size:26 final size:26
Alignment explanation
Indices: 71744580--71744656 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
71744570 CATATACTAA
* *
71744580 TATTGGCAGCTTTGCTGCGTTATTGC
1 TATTGGCAGCTTTGCTGCGATATTAC
* * *
71744606 TATTGGCAGCTCTACTGCGATATTAT
1 TATTGGCAGCTTTGCTGCGATATTAC
*
71744632 TACTGGCAGCTTTGCTGCGATATTA
1 TATTGGCAGCTTTGCTGCGATATTA
71744657 GTGTGTTGGC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.18, C:0.19, G:0.23, T:0.39
Consensus pattern (26 bp):
TATTGGCAGCTTTGCTGCGATATTAC
Found at i:71748613 original size:10 final size:10
Alignment explanation
Indices: 71748595--71748656 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
71748585 ATAATTAACA
*
71748595 TAATGAATTT
1 TAATTAATTT
71748605 TAATTAATTTT
1 TAATTAA-TTT
*
71748616 ATAAGTAATTT
1 -TAATTAATTT
*
71748627 TGATTAATTT
1 TAATTAATTT
*
71748637 TGATTAATTT
1 TAATTAATTT
*
71748647 TGATT-ATTT
1 TAATTAATTT
71748656 T
1 T
71748657 CGACAGATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
9 5 0.11
10 29 0.63
11 6 0.13
12 6 0.13
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (10 bp):
TAATTAATTT
Found at i:71749947 original size:29 final size:29
Alignment explanation
Indices: 71749915--71749974 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
71749905 ATTTCATAAG
71749915 TATGTATGTGCATTAACACATTTGTCTAT
1 TATGTATGTGCATTAACACATTTGTCTAT
*
71749944 TATGTATGTGCATTAACACATTTGTTTAT
1 TATGTATGTGCATTAACACATTTGTCTAT
71749973 TA
1 TA
71749975 AAATTTGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.28, C:0.12, G:0.13, T:0.47
Consensus pattern (29 bp):
TATGTATGTGCATTAACACATTTGTCTAT
Found at i:71752088 original size:19 final size:20
Alignment explanation
Indices: 71752054--71752095 Score: 77
Period size: 19 Copynumber: 2.1 Consensus size: 20
71752044 TATTTATACT
71752054 TTAATTAATATAGTTTAATC
1 TTAATTAATATAGTTTAATC
71752074 TTAATTAAT-TAGTTTAATC
1 TTAATTAATATAGTTTAATC
71752093 TTA
1 TTA
71752096 GTTTAGTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (20 bp):
TTAATTAATATAGTTTAATC
Found at i:71753941 original size:14 final size:14
Alignment explanation
Indices: 71753919--71753948 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
71753909 GAAAAATGGT
*
71753919 CCGATTGAACTGAA
1 CCGAGTGAACTGAA
71753933 CCGAGTGAACTGAA
1 CCGAGTGAACTGAA
71753947 CC
1 CC
71753949 AGCCAAGGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.23, T:0.17
Consensus pattern (14 bp):
CCGAGTGAACTGAA
Found at i:71758486 original size:39 final size:40
Alignment explanation
Indices: 71758390--71758578 Score: 278
Period size: 39 Copynumber: 4.8 Consensus size: 40
71758380 TCGGATTTAA
* *
71758390 CCGGATATAGCT-ACTCGCTCAAACGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71758430 CCGGATATAGTAGCTCGCATAAATGCCTTCGGGACTTAG-
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
71758469 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
71758509 CCGGAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71758548 CCGGA-ATTAGTCACTAGCACAAATGCCTTCG
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCG
71758579 TTATCATCCG
Statistics
Matches: 137, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
39 76 0.55
40 61 0.45
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71758552 original size:79 final size:78
Alignment explanation
Indices: 71758377--71758578 Score: 275
Period size: 79 Copynumber: 2.6 Consensus size: 78
71758367 AAACCAAGTA
* * * *
71758377 CCTTC-GGATTTAACCGGATATAGCTACTCGCTCAAACGCCTTCGGGACTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* *
71758441 AGCTCGCATAAATG
65 AACTCGCACAAATG
71758455 CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT-TAGT
1 CCTTCGGGACTTAGCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
71758519 AACTCGCACAAATG
65 AACTCGCACAAATG
*
71758533 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCG
1 CCTTCGGGACTTAG-CCGGATA-TAGT-ACTCGCACAAATGCCTTCG
71758579 TTATCATCCG
Statistics
Matches: 112, Mismatches: 8, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
78 37 0.33
79 75 0.67
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
ACTCGCACAAATG
Found at i:71766741 original size:40 final size:40
Alignment explanation
Indices: 71766696--71766886 Score: 271
Period size: 40 Copynumber: 4.8 Consensus size: 40
71766686 CGAGATTTAA
* *
71766696 CCGGATATAGCT-ACTCGCTCAAACGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71766736 CCGGATATAGTAGCTCGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
71766776 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
71766816 CCGGGAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CC-GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
71766856 CCAGA-ATTAGTCACTAGCACAAATGCCTTCG
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCG
71766887 TTATCATCCG
Statistics
Matches: 138, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 131 0.95
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71769629 original size:43 final size:42
Alignment explanation
Indices: 71769570--71769671 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
71769560 TCTCAGATGT
* * * *
71769570 GGTCTTACATGTAATCAAATATCGATACCACTATCCCAGATAG
1 GGTCTTACACGAAATCAAATA-CGATACCAATATCCCAGACAG
* * * *
71769613 GGTCTTACACGAAATCATATACGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACGATACCAATATCCCAGACAG
*
71769655 GGTCTTACACAAAATCA
1 GGTCTTACACGAAATCA
71769672 CAAATCAATG
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 32 0.64
43 18 0.36
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATACCAATATCCCAGACAG
Found at i:71769661 original size:42 final size:43
Alignment explanation
Indices: 71769551--71769709 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
71769541 AGCTCATATA
* ** * * *
71769551 ATGCCAATGTCTCAGATGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATATCG
* * * * *
71769594 ATACCACTATCCCAGATAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATATCG
* * * *
71769636 ATGCCAATGTCCCAGACATGGTCTTACACAAAATCACAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATATCG
* * *
71769679 ATGCCAACGTCCCAGACGTTGTCTTACACGA
1 ATGCCAATGTCCCAGACATGGTCTTACACGA
71769710 TAACTCGTAT
Statistics
Matches: 93, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
42 34 0.37
43 59 0.63
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCATATATCG
Found at i:71771323 original size:42 final size:42
Alignment explanation
Indices: 71771271--71771354 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
71771261 TCTTAAAATA
* * * *
71771271 AACTATGATTTTTCGTAAATAACAACGGTTTCAAAAATTATT
1 AACTAAGATTTCTCGTAAACAACAACGATTTCAAAAATTATT
**
71771313 AACTAAGATTTCTCGTAAACAACAACGATTTTGAAAATTATT
1 AACTAAGATTTCTCGTAAACAACAACGATTTCAAAAATTATT
71771355 GGGTTTCAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.36
Consensus pattern (42 bp):
AACTAAGATTTCTCGTAAACAACAACGATTTCAAAAATTATT
Found at i:71778682 original size:28 final size:27
Alignment explanation
Indices: 71778619--71778688 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
71778609 ATAGTGAGTC
71778619 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
71778646 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
71778674 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71778689 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:71786713 original size:28 final size:27
Alignment explanation
Indices: 71786650--71786719 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
71786640 ATAGTGAGTC
71786650 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
71786677 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
71786705 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71786720 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:71793658 original size:33 final size:33
Alignment explanation
Indices: 71793621--71793687 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
71793611 TCAAATCCTT
*
71793621 AGAACCCATGTCTAATCATGCAACCATATTATG
1 AGAACCCACGTCTAATCATGCAACCATATTATG
*
71793654 AGAACCTACGTCTAATCATGCAACCATATTATG
1 AGAACCCACGTCTAATCATGCAACCATATTATG
71793687 A
1 A
71793688 AATTTAATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (33 bp):
AGAACCCACGTCTAATCATGCAACCATATTATG
Found at i:71798459 original size:16 final size:16
Alignment explanation
Indices: 71798438--71798476 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
71798428 TCAACAACAT
71798438 AAAAGAATAGATACAC
1 AAAAGAATAGATACAC
71798454 AAAAGAATAGATACAC
1 AAAAGAATAGATACAC
71798470 AAAAGAA
1 AAAAGAA
71798477 CCATCACTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.67, C:0.10, G:0.13, T:0.10
Consensus pattern (16 bp):
AAAAGAATAGATACAC
Found at i:71805505 original size:40 final size:40
Alignment explanation
Indices: 71805461--71805644 Score: 293
Period size: 40 Copynumber: 4.6 Consensus size: 40
71805451 GCTACTAGCT
71805461 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
71805501 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
71805541 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
71805581 CAAATGCCTTCGAG-CTTAGCCCGGAATT-T-GTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG--TTATAGTAACTCGCA
71805620 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
71805645 GTATCAATCC
Statistics
Matches: 135, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
39 31 0.23
40 103 0.76
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:71809569 original size:12 final size:13
Alignment explanation
Indices: 71809540--71809570 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
71809530 TGCACGGGAC
71809540 AATATTGAAGCAA
1 AATATTGAAGCAA
71809553 AATATTGAAGC-A
1 AATATTGAAGCAA
71809565 AATATT
1 AATATT
71809571 TTCATTTTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29
Consensus pattern (13 bp):
AATATTGAAGCAA
Found at i:71810221 original size:17 final size:16
Alignment explanation
Indices: 71810192--71810225 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
71810182 AAATATTATG
71810192 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
71810208 AAATAAACAACAAACAA
1 AAATAAA-AACAAACAA
71810225 A
1 A
71810226 CGCCATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.79, C:0.15, G:0.00, T:0.06
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:71811548 original size:43 final size:42
Alignment explanation
Indices: 71811451--71811622 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 42
71811441 AGATAGGATC
*
71811451 CGATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCAT
1 CGATATGTGATTTCATGTAAGACCATGTCTGGGAC-ATGGCAT
71811494 CGACT-TGTGATTTACATGTAAGACCATGTCTGGGACATGGACAT
1 CGA-TATGTGATTT-CATGTAAGACCATGTCTGGGACATGG-CAT
* * * * * * *
71811538 -TATATTTGATTTCAAGTAAGGCCCTGTCTAGGACAGTGGTAT
1 CGATATGTGATTTCATGTAAGACCATGTCTGGGACA-TGGCAT
* * * * **
71811580 CGATATTTGATTACATTTAAGATCACATCTGGGACATTGGCAT
1 CGATATGTGATTTCATGTAAGACCATGTCTGGGACA-TGGCAT
71811623 TGTATGAGCT
Statistics
Matches: 103, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
42 22 0.21
43 55 0.53
44 26 0.25
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (42 bp):
CGATATGTGATTTCATGTAAGACCATGTCTGGGACATGGCAT
Found at i:71811591 original size:86 final size:85
Alignment explanation
Indices: 71811453--71811616 Score: 188
Period size: 86 Copynumber: 1.9 Consensus size: 85
71811443 ATAGGATCCG
* *
71811453 ATATGTGATTTCATGTAAGACCATGTCTGGGACGTTGGCATCGACTTGTGATTTACATGTAAGAC
1 ATATGTGATTTCAAGTAAGACCATGTCTAGGACGTTGGCATCGACTTGTGA-TTACATGTAAGAC
**
71811518 CATGTCTGGGACATGGACATT
65 CACATCTGGGACATGGACATT
* * * * * *
71811539 ATATTTGATTTCAAGTAAGGCCCTGTCTAGGACAG-TGGTATCGA-TATTTGATTACATTTAAGA
1 ATATGTGATTTCAAGTAAGACCATGTCTAGGAC-GTTGGCATCGACT-TGTGATTACATGTAAGA
*
71811602 TCACATCTGGGACAT
64 CCACATCTGGGACAT
71811617 TGGCATTGTA
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
85 24 0.37
86 40 0.62
87 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (85 bp):
ATATGTGATTTCAAGTAAGACCATGTCTAGGACGTTGGCATCGACTTGTGATTACATGTAAGACC
ACATCTGGGACATGGACATT
Found at i:71828973 original size:43 final size:41
Alignment explanation
Indices: 71828925--71829087 Score: 157
Period size: 43 Copynumber: 3.9 Consensus size: 41
71828915 ATCTGATATG
*
71828925 TGATTTCATGTAAGACCACGTCTGGGACATTGGCATTGACTT
1 TGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGA-TT
* * **
71828967 ATGATTTCGTGTAAGACCATGT-TGGGACATCAGCATCGTATT
1 -TGATTTCATGTAAGACCACGTCTGGGACATTGGCATCG-ATT
** * *
71829009 TGATTTCATGTAAGACCTTGTCTGGGACAGTGGAATCGATATT
1 TGATTTCATGTAAGACCACGTCTGGGACATTGGCATCG--ATT
* * * *
71829052 TGATTACATGTAAGACCACGTTTTGGACGTTGGCAT
1 TGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
71829088 TGTATGAGGT
Statistics
Matches: 98, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 19 0.19
42 27 0.28
43 52 0.53
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.34
Consensus pattern (41 bp):
TGATTTCATGTAAGACCACGTCTGGGACATTGGCATCGATT
Found at i:71829035 original size:42 final size:41
Alignment explanation
Indices: 71828925--71829069 Score: 159
Period size: 43 Copynumber: 3.4 Consensus size: 41
71828915 ATCTGATATG
* *
71828925 TGATTTCATGTAAGACCACGTCTGGGACATTGGCATTG-ACTT
1 TGATTTCATGTAAGACCATGTCTGGGACA-TGGCATCGTA-TT
* *
71828967 ATGATTTCGTGTAAGACCATGT-TGGGACATCAGCATCGTATT
1 -TGATTTCATGTAAGACCATGTCTGGGACAT-GGCATCGTATT
* *
71829009 TGATTTCATGTAAGACCTTGTCTGGGACAGTGGAATCGATATT
1 TGATTTCATGTAAGACCATGTCTGGGACA-TGGCATCG-TATT
*
71829052 TGATTACATGTAAGACCA
1 TGATTTCATGTAAGACCA
71829070 CGTTTTGGAC
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
41 20 0.23
42 26 0.30
43 41 0.47
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (41 bp):
TGATTTCATGTAAGACCATGTCTGGGACATGGCATCGTATT
Found at i:71838509 original size:14 final size:15
Alignment explanation
Indices: 71838458--71838519 Score: 80
Period size: 15 Copynumber: 4.4 Consensus size: 15
71838448 CAAAGATAAC
71838458 AAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
71838471 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
71838486 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
71838501 AAG-AATCCAG-ATA
1 AAGAAATCCAGAATA
71838514 AAGAAA
1 AAGAAA
71838520 CCCAAGATAC
Statistics
Matches: 44, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
13 12 0.27
14 12 0.27
15 19 0.43
16 1 0.02
ACGTcount: A:0.61, C:0.13, G:0.15, T:0.11
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:71838512 original size:28 final size:28
Alignment explanation
Indices: 71838458--71838521 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
71838448 CAAAGATAAC
71838458 AAGAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCGAATAAAGAAATCCAAGATA
71838486 AAGAAATCCAGAATAAAG-AATCC-AGATA
1 AAGAAA-CC-GAATAAAGAAATCCAAGATA
71838514 AAGAAACC
1 AAGAAACC
71838522 CAAGATACGA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
27 2 0.06
28 17 0.50
29 7 0.21
30 8 0.24
ACGTcount: A:0.59, C:0.16, G:0.14, T:0.11
Consensus pattern (28 bp):
AAGAAACCGAATAAAGAAATCCAAGATA
Found at i:71841552 original size:93 final size:93
Alignment explanation
Indices: 71841440--71841611 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
71841430 GCCCATAAGT
* *
71841440 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71841505 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
71841533 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71841598 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
71841612 CAATATCCTA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:71841607 original size:46 final size:46
Alignment explanation
Indices: 71841432--71841607 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
71841422 ATGTAACCGC
* *
71841432 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
71841478 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
71841524 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
71841571 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
71841608 TGCCCAATAT
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:71846061 original size:40 final size:39
Alignment explanation
Indices: 71846017--71846129 Score: 113
Period size: 39 Copynumber: 2.8 Consensus size: 39
71846007 AAGTGACTAT
*
71846017 ATCCGGACTAGGATCCGAAGGCATTCGTGCGAGTTAATAA
1 ATCCGGGCTA-GATCCGAAGGCATTCGTGCGAGTTAATAA
* * * *
71846057 ATCCGGGCTA-AGCCTGAAGGCATTTGTGCAAGTTACTAA
1 ATCCGGGCTAGATCC-GAAGGCATTCGTGCGAGTTAATAA
* *
71846096 ACCCGGGTTA-AGTCTCGAAGGCATTCGTGCGAGT
1 ATCCGGGCTAGA-TC-CGAAGGCATTCGTGCGAGT
71846130 CACTATAACC
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
38 3 0.05
39 30 0.50
40 26 0.43
41 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAGATCCGAAGGCATTCGTGCGAGTTAATAA
Found at i:71846078 original size:39 final size:40
Alignment explanation
Indices: 71846032--71846129 Score: 135
Period size: 39 Copynumber: 2.5 Consensus size: 40
71846022 GACTAGGATC
*
71846032 CGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCT
1 CGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGCCT
* * * * *
71846072 -GAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCT
1 CGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGCCT
71846111 CGAAGGCATTCGTGCGAGT
1 CGAAGGCATTCGTGCGAGT
71846130 CACTATAACC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 33 0.67
40 16 0.33
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (40 bp):
CGAAGGCATTCGTGCGAGTTAATAAACCCGGGCTAAGCCT
Found at i:71846122 original size:79 final size:80
Alignment explanation
Indices: 71845978--71846162 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
71845968 TCGAATGATG
* * *
71845978 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
71846043 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* * **
71846058 TCCGGGCTAAG-CCTGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCTCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAACCCGGACTAAGATC-CGAAGGCAT
* *
71846120 TCGTGCGAGTCACTATAA
64 TCGTGCGAGTTAATA-AA
**
71846138 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
71846163 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.02
79 54 0.61
80 33 0.37
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:71846142 original size:40 final size:40
Alignment explanation
Indices: 71846032--71846170 Score: 131
Period size: 40 Copynumber: 3.5 Consensus size: 40
71846022 GACTAGGATC
* * * * *
71846032 CGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAGCCT
1 CGAAGGCATTCGTGCGAGTCACTAAACCCGGGTTAAGTCT
* * *
71846072 -GAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCT
1 CGAAGGCATTCGTGCGAGTCACTAAACCCGGGTTAAGTCT
* *
71846111 CGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTT-CGTCC
1 CGAAGGCATTCGTGCGAGTCACTA-AACCCGGG-TTAAGTCT
* *
71846151 CGAAGGCATTTGAGCGAGTC
1 CGAAGGCATTCGTGCGAGTC
71846171 GTTATATCCA
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 33 0.40
40 46 0.55
41 4 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CGAAGGCATTCGTGCGAGTCACTAAACCCGGGTTAAGTCT
Found at i:71851293 original size:19 final size:19
Alignment explanation
Indices: 71851238--71851294 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
71851228 TAAGATGGAG
71851238 CTTGTTGTT-ATTATTTGA
1 CTTGTTGTTAATTATTTGA
* * *
71851256 ATTGTATGATAAATATTTGA
1 CTTGT-TGTTAATTATTTGA
*
71851276 CTTGTTCTTAATTATTTGA
1 CTTGTTGTTAATTATTTGA
71851295 TCTTAATTCT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 4 0.13
19 14 0.47
20 12 0.40
ACGTcount: A:0.26, C:0.05, G:0.14, T:0.54
Consensus pattern (19 bp):
CTTGTTGTTAATTATTTGA
Found at i:71867659 original size:47 final size:46
Alignment explanation
Indices: 71867594--71867761 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
71867584 TTTGTGTGCT
**
71867594 AGTGTAAGACATGTCTGGGACATGCATCGACCA-CATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-CCATCAAGATGAGAGCC
* * *
71867640 AGTGTAAGACCATGTCTGGGACATTGCATCGGCATTAAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACA-TGCATCGCCATCAAGATGAGAGCC
* * *
71867688 AGTGTAAGACATGTCTGGAACATGCATCGGTC-TCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCATCAAGATG-AGAGCC
**
71867734 AGCATAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
71867762 ATCGGCTACG
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
46 49 0.47
47 30 0.29
48 25 0.24
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCATCAAGATGAGAGCC
Found at i:71870369 original size:49 final size:47
Alignment explanation
Indices: 71870295--71870576 Score: 240
Period size: 51 Copynumber: 5.7 Consensus size: 47
71870285 ATCTGATACG
* * *
71870295 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAAC-AT-TGGTACA
* ** *
71870344 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTTCCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AACAT-TGGTACA
* * * * **
71870393 CGTAGGAGCCTGCACTTAATACTACACACGTGATCGAAGTCATTGAGTATG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA--CATTG-GTACA
* * **
71870444 CATAGTAGCCTGCACTTTGTACTACACACGTGATCGAAGTCATTGAGTATG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA--CATTG-GTACA
* * * *
71870495 CATAGTAGCCTGCACTTAGTACTACACATGCGACTTAATAGTATGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGAC-CAACA-T-TGGTACA
71870545 CATAGTAGCCTGCACTTAGTACTACACACGTG
1 CATAGTAGCCTGCACTTAGTACTACACACGTG
71870577 TACTCACAAT
Statistics
Matches: 197, Mismatches: 28, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
49 72 0.37
50 39 0.20
51 86 0.44
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (47 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAACATTGGTACA
Found at i:71870467 original size:51 final size:51
Alignment explanation
Indices: 71870346--71870576 Score: 251
Period size: 51 Copynumber: 4.6 Consensus size: 51
71870336 CCGGTACACG
** ** *
71870346 TAGTAGCCTGCACTTAGTACTACACACGTGA-C--CTTCCATCTGA-TACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT-CAT-TGAGTATGCA
* *
71870395 TAGGAGCCTGCACTTAATACTACACACGTGATCGAAGTCATTGAGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTATGCA
*
71870446 TAGTAGCCTGCACTTTGTACTACACACGTGATCGAAGTCATTGAGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTATGCA
* * ** **
71870497 TAGTAGCCTGCACTTAGTACTACACATGCGACTTAATAGT-A-TG-GTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-TCGA-AGTCATTGAGTATGCA
71870547 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
71870577 TACTCACAAT
Statistics
Matches: 157, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
49 29 0.18
50 37 0.24
51 84 0.54
52 4 0.03
53 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTATGCA
Found at i:71874608 original size:37 final size:37
Alignment explanation
Indices: 71874558--71874632 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
71874548 TGCCTAAAGG
71874558 GTTTGACACTTTAATCACAAATTCAGTAGATTCCACA
1 GTTTGACACTTTAATCACAAATTCAGTAGATTCCACA
*
71874595 GTTTGACACTTTAATCACAAATTCAGTAGATTCTACA
1 GTTTGACACTTTAATCACAAATTCAGTAGATTCCACA
71874632 G
1 G
71874633 GCAAGCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (37 bp):
GTTTGACACTTTAATCACAAATTCAGTAGATTCCACA
Found at i:71877530 original size:51 final size:48
Alignment explanation
Indices: 71877360--71877590 Score: 223
Period size: 49 Copynumber: 4.7 Consensus size: 48
71877350 ATCTGATACG
* * **
71877360 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAAC-ATTGAGTACA
* * *
71877409 CGTAGTAGCCTGTACTTAGTACTACACACGTGACCTCACATCTGA-TACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AACAT-TGAGTACA
* * *
71877458 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA--CATTGAGTACA
* * *
71877509 CATAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTATG-GTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGAC-CAACA-T-TGAGTACA
* * *
71877559 CGTCGTAGCCTGCACGTAGTACTACACACGTG
1 CATAGTAGCCTGCACTTAGTACTACACACGTG
71877591 TTGTGACAGC
Statistics
Matches: 152, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
49 72 0.47
50 40 0.26
51 40 0.26
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (48 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAACATTGAGTACA
Found at i:71878620 original size:40 final size:39
Alignment explanation
Indices: 71878452--71878631 Score: 161
Period size: 40 Copynumber: 4.5 Consensus size: 39
71878442 AGAAATTGAA
* *
71878452 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
71878492 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
71878532 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
71878572 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
*
71878612 TGATATCCGGG-TAAGTCCCG
1 TGATATCCGGGCTAAGACCCG
71878632 TTGGCCTTGG
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.03
39 12 0.10
40 95 0.83
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:71885831 original size:40 final size:39
Alignment explanation
Indices: 71885663--71885833 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
71885653 AGAAATTGAA
* *
71885663 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
71885703 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
71885743 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
71885783 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
71885823 TGATATCCGGG
1 TGATATCCGGG
71885834 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:71891049 original size:19 final size:19
Alignment explanation
Indices: 71891025--71891070 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
71891015 TAGTCTCGAG
71891025 AGAGATAATAATATAACTT
1 AGAGATAATAATATAACTT
71891044 AGAGATAATAATATAACTT
1 AGAGATAATAATATAACTT
*
71891063 AGGGATAA
1 AGAGATAA
71891071 CCAAACCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.52, C:0.04, G:0.15, T:0.28
Consensus pattern (19 bp):
AGAGATAATAATATAACTT
Found at i:71894587 original size:41 final size:42
Alignment explanation
Indices: 71894485--71894622 Score: 154
Period size: 43 Copynumber: 3.3 Consensus size: 42
71894475 TTTGATTTCT
*
71894485 TGTAAGACCATGTCTTGGACATTGGCATCA-ATATGAAATTACG
1 TGTAAGACCATGTCTGGGACATTGGCATCATATATG--ATTACG
* *
71894528 TGTAAGACCATGTTTGGGACATTGACATCATATATGATT-CG
1 TGTAAGACCATGTCTGGGACATTGGCATCATATATGATTACG
* * ** * *
71894569 TGTAAAACCCTGTCTGGGACAGAGGCATCAATATATGATAACA
1 TGTAAGACCATGTCTGGGACATTGGCATC-ATATATGATTACG
71894612 TGTAAGACCAT
1 TGTAAGACCAT
71894623 ATCTAGGATA
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
41 25 0.32
42 12 0.15
43 37 0.47
44 5 0.06
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATTGGCATCATATATGATTACG
Found at i:71896870 original size:24 final size:24
Alignment explanation
Indices: 71896838--71896920 Score: 157
Period size: 24 Copynumber: 3.5 Consensus size: 24
71896828 AATCTCAAAT
71896838 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
71896862 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
71896886 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
71896910 GCACTATGTGT
1 GCACTATGTGT
71896921 CATAGTGCGA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:71903484 original size:40 final size:40
Alignment explanation
Indices: 71903376--71903628 Score: 373
Period size: 40 Copynumber: 6.3 Consensus size: 40
71903366 CGGGATTTAA
* * * * *
71903376 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
71903416 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
71903456 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
71903496 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
71903536 CCGGATATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGG--ATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
71903578 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
71903618 CCGGATATATC
1 CCGGATATATC
71903629 TCCAATGTTC
Statistics
Matches: 194, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 153 0.79
42 40 0.21
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:71903574 original size:82 final size:82
Alignment explanation
Indices: 71903388--71903627 Score: 369
Period size: 82 Copynumber: 3.0 Consensus size: 82
71903378 GGATATAGCG
* * * * * * * * *
71903388 ACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCT
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCT
71903452 TAGCCCGG--ATATATCA
65 TAGCCCGGATATATATCA
71903468 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
71903533 AGCCCGGATATATATCA
66 AGCCCGGATATATATCA
71903550 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
1 ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
71903615 AGCCCGGATATAT
66 AGCCCGGATATAT
71903628 CTCCAATGTT
Statistics
Matches: 148, Mismatches: 9, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
79 1 0.01
80 61 0.41
82 86 0.58
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (82 bp):
ACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTT
AGCCCGGATATATATCA
Found at i:71903599 original size:122 final size:120
Alignment explanation
Indices: 71903376--71903628 Score: 382
Period size: 122 Copynumber: 2.1 Consensus size: 120
71903366 CGGGATTTAA
* * * * * *
71903376 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAACCCGGATTTGGTGACTTGCACAAAGG
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGATTTGATAACTCGCACAAAGG
71903441 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * *
71903496 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATAT-ATCAACTCGCACGA
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGAT-T-TGAT-AACTCGCACAA
*
71903560 ATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
63 AGGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
71903618 CCGGATATATC
1 CCGGATATATC
71903629 TCCAATGTTC
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
120 41 0.34
121 2 0.02
122 77 0.64
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (120 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCATAACCCGGATTTGATAACTCGCACAAAGG
CCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:71904964 original size:40 final size:40
Alignment explanation
Indices: 71904909--71905130 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
71904899 TATTCGGATG
71904909 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
71904949 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* *
71904992 ATA-CC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
71905030 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
71905070 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
71905110 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
71905131 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 14, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
38 8 0.05
39 15 0.09
40 103 0.63
41 26 0.16
42 2 0.01
43 9 0.06
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:71905051 original size:81 final size:80
Alignment explanation
Indices: 71904909--71905130 Score: 301
Period size: 81 Copynumber: 2.8 Consensus size: 80
71904899 TATTCGGATG
*
71904909 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
**
71904974 TTTGTGCGAGTAGTTG-CT
66 TTCATGC---TAG-TGACT
*
71904992 ATA-CC-GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
71905055 TTCATGCTAGTGACT
66 TTCATGCTAGTGACT
* * *
71905070 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
71905131 ATACTTGGGT
Statistics
Matches: 128, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
77 2 0.02
78 8 0.06
79 16 0.12
80 34 0.27
81 63 0.49
82 2 0.02
83 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTCATGCTAGTGACT
Found at i:71913181 original size:40 final size:40
Alignment explanation
Indices: 71913126--71913349 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
71913116 TATTCGGATG
71913126 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
71913166 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-CA--AGTTACT
* * *
71913209 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
71913249 ATATCCGGGCTAAGTCTCGAAGGCATTCCTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
71913289 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
71913329 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
71913350 ATACTTGGGT
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
39 13 0.08
40 109 0.69
41 1 0.01
43 36 0.23
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:71913270 original size:83 final size:80
Alignment explanation
Indices: 71913130--71913349 Score: 275
Period size: 83 Copynumber: 2.7 Consensus size: 80
71913120 CGGATGATAT
* **
71913130 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCC
*
71913195 TG-TGAGTAGTTGCTATAC
66 TGCT-AGT-G--ACTATAC
* *
71913213 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCTCGAAGGCATTCC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCC
*
71913278 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
71913293 TCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
71913350 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
79 13 0.11
80 41 0.33
81 2 0.02
82 1 0.01
83 65 0.53
84 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCC
TGCTAGTGACTATAC
Found at i:71917147 original size:48 final size:48
Alignment explanation
Indices: 71917091--71917409 Score: 190
Period size: 48 Copynumber: 6.6 Consensus size: 48
71917081 TATGTGTGCT
* *
71917091 AGTGTAAGACCATGTTTGGAACATGGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACATTATGAGAGCC
* **** * * *
71917139 AGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGA-TATGTGCGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGG-CCACATTATGAGAGCC
* * * * *
71917187 AGTGTAAGACCATGTATGGGACATGGCATC-G--ATATTGAT-ATGTGCGTT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACATT-ATGA-GAGC--C
* * * *
71917235 AGTGTAAGACCGTGTCTAGAACATGGCGTCGGCCACAATATGAGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACATTATGAGAGCC
* * * * *
71917283 AGTGTAAGACCATGTTTGGAACATGACATCTG---CATTGAGATAAGAGCT
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACATT---ATGAGAGCC
* * * * *
71917331 AGTGTAAGACAATGTCTGGGACATGGCATCGGCCTCGA-CATGTGAGCC
1 AGTGTAAGACCATGTCTGGAACATGGCATCGGCCAC-ATTATGAGAGCC
** *
71917379 AAAGTAAAACCATGTCTAGG-ACATGGCATCG
1 AGTGTAAGACCATGTCT-GGAACATGGCATCG
71917410 ACAATTTACC
Statistics
Matches: 207, Mismatches: 46, Indels: 36
0.72 0.16 0.12
Matches are distributed among these distances:
44 1 0.00
45 4 0.02
46 5 0.02
47 1 0.00
48 181 0.87
49 4 0.02
50 5 0.02
51 5 0.02
52 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGGCCACATTATGAGAGCC
Found at i:71917242 original size:96 final size:96
Alignment explanation
Indices: 71917078--71917412 Score: 283
Period size: 96 Copynumber: 3.5 Consensus size: 96
71917068 CACATTTGAG
* *
71917078 TGATATGTGTGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCCACATT-ATGA-GAGC-CA
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAG--ACATTGAT-ATGAGCGTA
***
71917140 GTGTAAGACCATGTCTGGGACATGGCATCGGTGT
63 GTGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * * * *
71917174 TGATATGTGCGCTAGTGTAAGACCATGTATGGGACATGGCATC-GATATTGATATGTGCGTTAGT
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGACATTGATATGAGCG-TAGT
* * * *
71917238 GTAAGACCGTGTCTAGAACATGGCGTCGGCCA
65 GTAAGACCATGTCTGGGACATGGCATCGGCCA
** * * * * *
71917270 CAATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGACATCTG-CATTGAGATAAGAGC-TAG
1 TGATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGACATT--GATATGAGCGTAG
*
71917333 TGTAAGACAATGTCTGGGACATGGCATCGGCC-
64 TGTAAGACCATGTCTGGGACATGGCATCGGCCA
* * ** * *
71917365 TCGACATGTGAGCCAAAGTAAAACCATGTCTAGG-ACATGGCATC-GACA
1 T-GATATGTGAGCTAGTGTAAGACCATGT-TTGGAACATGGCATCAGACA
71917413 ATTTACCTTC
Statistics
Matches: 191, Mismatches: 38, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
93 5 0.03
94 5 0.03
95 2 0.01
96 168 0.88
97 4 0.02
98 7 0.04
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (96 bp):
TGATATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGACATTGATATGAGCGTAGTG
TAAGACCATGTCTGGGACATGGCATCGGCCA
Found at i:71917338 original size:144 final size:144
Alignment explanation
Indices: 71917078--71917361 Score: 388
Period size: 144 Copynumber: 2.0 Consensus size: 144
71917068 CACATTTGAG
* * * *
71917078 TGATATGTGTGCTAGTGTAAGACCATGTTTGGAACATGGCATCAGCCACATTATGAGAGCCAGTG
1 TGATATGTGCGCTAGTGTAAGACCATGTCTAGAACATGGCATCAGCCACAATATGAGAGCCAGTG
* * ** * ** * *
71917143 TAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGCGCTAGTGTAAGACCATGTATGGGA
66 TAAGACCATGTCTGGAACATGACATCGGCATTGAGATAAGAGCTAGTGTAAGACAATGTATGGGA
71917208 CATGGCATCGATAT
131 CATGGCATCGATAT
* * * *
71917222 TGATATGTGCGTTAGTGTAAGACCGTGTCTAGAACATGGCGTCGGCCACAATATGAGAGCCAGTG
1 TGATATGTGCGCTAGTGTAAGACCATGTCTAGAACATGGCATCAGCCACAATATGAGAGCCAGTG
* * *
71917287 TAAGACCATGTTTGGAACATGACATCTGCATTGAGATAAGAGCTAGTGTAAGACAATGTCTGGGA
66 TAAGACCATGTCTGGAACATGACATCGGCATTGAGATAAGAGCTAGTGTAAGACAATGTATGGGA
71917352 CATGGCATCG
131 CATGGCATCG
71917362 GCCTCGACAT
Statistics
Matches: 120, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
144 120 1.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (144 bp):
TGATATGTGCGCTAGTGTAAGACCATGTCTAGAACATGGCATCAGCCACAATATGAGAGCCAGTG
TAAGACCATGTCTGGAACATGACATCGGCATTGAGATAAGAGCTAGTGTAAGACAATGTATGGGA
CATGGCATCGATAT
Found at i:71917374 original size:144 final size:144
Alignment explanation
Indices: 71917090--71917408 Score: 368
Period size: 144 Copynumber: 2.2 Consensus size: 144
71917080 ATATGTGTGC
* * *
71917090 TAGTGTAAGACCATGTTTGGAACATGGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTC
1 TAGTGTAAGACCATGTCTAGAACATGGCATCAGCCACAATATGAGAGCCAGTGTAAGACCATGTC
* * ** * ** * * *
71917155 TGGGACATGGCATCGGTGTTGATATGTGCGCTAGTGTAAGACCATGTATGGGACATGGCATCGAT
66 TGGAACATGACATCGGCATTGAGATAAGAGCTAGTGTAAGACAATGTATGGGACATGGCATCGAC
* *
71917220 ATTGATATGTGCGT
131 ATCGACATGTGCGT
* * * *
71917234 TAGTGTAAGACCGTGTCTAGAACATGGCGTCGGCCACAATATGAGAGCCAGTGTAAGACCATGTT
1 TAGTGTAAGACCATGTCTAGAACATGGCATCAGCCACAATATGAGAGCCAGTGTAAGACCATGTC
* * *
71917299 TGGAACATGACATCTGCATTGAGATAAGAGCTAGTGTAAGACAATGTCTGGGACATGGCATCGGC
66 TGGAACATGACATCGGCATTGAGATAAGAGCTAGTGTAAGACAATGTATGGGACATGGCATCGAC
* * *
71917364 CTCGACATGTGAGC
131 ATCGACATGTGCGT
* ** * *
71917378 CAAAGTAAAACCATGTCTAGGACATGGCATC
1 TAGTGTAAGACCATGTCTAGAACATGGCATC
71917409 GACAATTTAC
Statistics
Matches: 143, Mismatches: 32, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
144 143 1.00
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (144 bp):
TAGTGTAAGACCATGTCTAGAACATGGCATCAGCCACAATATGAGAGCCAGTGTAAGACCATGTC
TGGAACATGACATCGGCATTGAGATAAGAGCTAGTGTAAGACAATGTATGGGACATGGCATCGAC
ATCGACATGTGCGT
Found at i:71929548 original size:85 final size:83
Alignment explanation
Indices: 71929422--71929577 Score: 190
Period size: 85 Copynumber: 1.8 Consensus size: 83
71929412 TACCGTACCA
* * **
71929422 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCGTATCGATACCAATAGCCCAGCTATGGTC
1 ATGCCATATCACAAATATGGTCTTACAAGTAATCTC-TATCGATACC-ATAGCCCAAATATGGTC
71929487 TTACACGAGGTCTCGTATCG
64 TTACACGAGGTCTCGTATCG
* *
71929507 ATGCCATATCACAAATATGGTCTTATACAAAGT-ATCT-TATCGATGCCATATCCCAAATATGGT
1 ATGCCATATCACAAATATGGTC-T-TAC-AAGTAATCTCTATCGATACCATAGCCCAAATATGGT
*
71929570 CTTGCACG
63 CTTACACG
71929578 TAATCTTAGT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
84 20 0.33
85 30 0.49
86 1 0.02
87 7 0.11
88 3 0.05
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (83 bp):
ATGCCATATCACAAATATGGTCTTACAAGTAATCTCTATCGATACCATAGCCCAAATATGGTCTT
ACACGAGGTCTCGTATCG
Found at i:71932506 original size:28 final size:27
Alignment explanation
Indices: 71932438--71932553 Score: 154
Period size: 24 Copynumber: 4.4 Consensus size: 27
71932428 GATATGACAT
**
71932438 TGTGCTAAGTGAAATAAAACCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
71932465 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGC-A
71932490 TGTGCTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
71932517 --T-CTAAGTGAAATAAGTCCATGGCA
1 TGTGCTAAGTGAAATAAGTCCATGGCA
71932541 TTGTGCTAAGTGA
1 -TGTGCTAAGTGA
71932554 GAAATTTCCC
Statistics
Matches: 79, Mismatches: 2, Indels: 15
0.82 0.02 0.16
Matches are distributed among these distances:
24 43 0.54
25 3 0.04
27 3 0.04
28 30 0.38
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (27 bp):
TGTGCTAAGTGAAATAAGTCCATGGCA
Found at i:71932506 original size:52 final size:52
Alignment explanation
Indices: 71932438--71932553 Score: 205
Period size: 52 Copynumber: 2.2 Consensus size: 52
71932428 GATATGACAT
71932438 TGTGCTAAGTGAAATAAAACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAAACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
** *
71932490 TGTGCTAAGTGAAATAAGTCCATGGCATCTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAAACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
71932542 TGTGCTAAGTGA
1 TGTGCTAAGTGA
71932554 GAAATTTCCC
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAAACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
Found at i:71932632 original size:51 final size:51
Alignment explanation
Indices: 71932577--71932826 Score: 412
Period size: 51 Copynumber: 4.9 Consensus size: 51
71932567 TGAACCTTAG
* * *
71932577 GAATAAAATAGATTTGGACACAAGTGTGGTACTATATGAAGGCCACTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
71932628 GAATATAATAGCTTTGGACACAAGTGTGATATTATGTGAAGGCCACTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
71932679 GAATATAATAGCTTTGAACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
71932730 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
71932781 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATATAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
71932827 CGTGTATCCG
Statistics
Matches: 187, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
50 1 0.01
51 186 0.99
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (51 bp):
GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:71940169 original size:31 final size:31
Alignment explanation
Indices: 71940134--71940201 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
71940124 GGCTTGGGAG
* *
71940134 ACGCCCGTGTGGGTAGGCTGTGTGGTCACAC
1 ACGCCCGTGTGGGCAGGCCGTGTGGTCACAC
71940165 ACGCCCGTGTGGGCAGGCCGTGTGGTCACAC
1 ACGCCCGTGTGGGCAGGCCGTGTGGTCACAC
71940196 ACGCCC
1 ACGCCC
71940202 TATCCCTAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.13, C:0.32, G:0.37, T:0.18
Consensus pattern (31 bp):
ACGCCCGTGTGGGCAGGCCGTGTGGTCACAC
Found at i:71940511 original size:27 final size:27
Alignment explanation
Indices: 71940477--71940529 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
71940467 GCCATTTTGC
71940477 CCCCCTTATTCACACATACACTTACCT
1 CCCCCTTATTCACACATACACTTACCT
71940504 CCCCCTTATTCACACATACACTTACC
1 CCCCCTTATTCACACATACACTTACC
71940530 CCAATTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.45, G:0.00, T:0.28
Consensus pattern (27 bp):
CCCCCTTATTCACACATACACTTACCT
Found at i:71945131 original size:40 final size:40
Alignment explanation
Indices: 71945073--71945240 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
71945063 CAATTGAATG
* *
71945073 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
71945114 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
71945153 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
71945193 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
71945233 ATATCCGG
1 ATATCCGG
71945241 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:71945211 original size:80 final size:79
Alignment explanation
Indices: 71945073--71945240 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
71945063 CAATTGAATG
* * *
71945073 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
71945138 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
71945153 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
71945217 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
71945233 ATATCCGG
1 ATATCCGG
71945241 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:71954697 original size:38 final size:39
Alignment explanation
Indices: 71954645--71954787 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
71954635 GAATGTTCGA
71954645 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
71954684 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
71954722 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
71954761 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
71954788 CTTTGTGCGG
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
38 35 0.37
39 51 0.54
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:71954733 original size:77 final size:79
Alignment explanation
Indices: 71954646--71954826 Score: 267
Period size: 77 Copynumber: 2.3 Consensus size: 79
71954636 AATGTTCGAG
71954646 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATA-CCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
71954709 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
*
71954723 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
** *
71954788 CTTTGTGCGGGTTA
66 AATTGTGCGAGTTA
** * *
71954802 CCATAACCGGGCTATGTCCCGAAGG
1 TGATATCCGGGCTAAG-CCCGAAGG
71954827 TGTTTGAACG
Statistics
Matches: 93, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
77 44 0.47
78 9 0.10
79 32 0.34
80 8 0.09
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:71956351 original size:40 final size:40
Alignment explanation
Indices: 71956293--71956460 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
71956283 CAATTGAATG
* * *
71956293 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-CTT
*
71956334 -TATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGCTT
* *
71956373 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGC-TT
* ** *
71956413 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGCTT
71956453 ATATCCGG
1 ATATCCGG
71956461 TTGTATTCCG
Statistics
Matches: 113, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
39 3 0.03
40 108 0.96
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGCTT
Found at i:71956431 original size:80 final size:79
Alignment explanation
Indices: 71956293--71956460 Score: 221
Period size: 80 Copynumber: 2.1 Consensus size: 79
71956283 CAATTGAATG
* * *
71956293 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
* *
71956358 TTTGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
71956373 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
71956437 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
71956453 ATATCCGG
1 ATATCCGG
71956461 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 2 0.03
80 74 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:71966759 original size:42 final size:42
Alignment explanation
Indices: 71966707--71966869 Score: 184
Period size: 42 Copynumber: 3.9 Consensus size: 42
71966697 ATACATAGTA
* * **
71966707 TCGTACCAATGCCATATCCCAGAAATGGTCTTACATGTAA-TC
1 TCGTATCAATGCCATATCCCAGATATGGTCTTACA-CAAAGTC
* * *
71966749 TCGTATCAATGCCAATAGCCCAGCTATAGTCTTACACAAAGTC
1 TCGTATCAATGCC-ATATCCCAGATATGGTCTTACACAAAGTC
**
71966792 TCGTATCAATGCCATATCCTGGATATGGTCTTACACAAAGTC
1 TCGTATCAATGCCATATCCCAGATATGGTCTTACACAAAGTC
* * **
71966834 TTGTATCAATGGCATATATCAGATATGGTCTTACAC
1 TCGTATCAATGCCATATCCCAGATATGGTCTTACAC
71966870 GTAATCTTAG
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
42 68 0.67
43 33 0.33
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
TCGTATCAATGCCATATCCCAGATATGGTCTTACACAAAGTC
Found at i:71967616 original size:33 final size:33
Alignment explanation
Indices: 71967576--71967642 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
71967566 GTAGAAATAG
71967576 ATAGATCATGTTATGAGGATTTCAAAAACATAA
1 ATAGATCATGTTATGAGGATTTCAAAAACATAA
*
71967609 ATAGATCATGTTATGAGGATTTCGAAAACATAA
1 ATAGATCATGTTATGAGGATTTCAAAAACATAA
71967642 A
1 A
71967643 AATCATTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.30
Consensus pattern (33 bp):
ATAGATCATGTTATGAGGATTTCAAAAACATAA
Found at i:71978789 original size:182 final size:182
Alignment explanation
Indices: 71978482--71978823 Score: 675
Period size: 182 Copynumber: 1.9 Consensus size: 182
71978472 TGTTTTATAA
71978482 TATATATTAGAACATATTATAACTTAAAGTTTAATTTATAAATTTAACCTTAATGAATTATTATA
1 TATATATTAGAACATATTATAACTTAAAGTTTAATTTATAAATTTAACCTTAATGAATTATTATA
71978547 TAAACATTATATTATAAGCCTAATACTGTCCAACTAACATTAAATTAGGCTATTTACAACATAAA
66 TAAACATTATATTATAAGCCTAATACTGTCCAACTAACATTAAATTAGGCTATTTACAACATAAA
71978612 GGTTTCCATTAAAAAATCCAATAGCAATTATTATAAATTTATATAAACATAT
131 GGTTTCCATTAAAAAATCCAATAGCAATTATTATAAATTTATATAAACATAT
*
71978664 TATATATTAGAACATATTATAACTTAAAGTTTAATTTATAAATTTAACCTTAATGAATTATTATT
1 TATATATTAGAACATATTATAACTTAAAGTTTAATTTATAAATTTAACCTTAATGAATTATTATA
71978729 TAAACATTATATTATAAGCCTAATACTGTCCAACTAACATTAAATTAGGCTATTTACAACATAAA
66 TAAACATTATATTATAAGCCTAATACTGTCCAACTAACATTAAATTAGGCTATTTACAACATAAA
71978794 GGTTTCCATTAAAAAATCCAATAGCAATTA
131 GGTTTCCATTAAAAAATCCAATAGCAATTA
71978824 GGTCCCTTTT
Statistics
Matches: 159, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
182 159 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (182 bp):
TATATATTAGAACATATTATAACTTAAAGTTTAATTTATAAATTTAACCTTAATGAATTATTATA
TAAACATTATATTATAAGCCTAATACTGTCCAACTAACATTAAATTAGGCTATTTACAACATAAA
GGTTTCCATTAAAAAATCCAATAGCAATTATTATAAATTTATATAAACATAT
Found at i:71991606 original size:9 final size:9
Alignment explanation
Indices: 71991582--71991617 Score: 54
Period size: 9 Copynumber: 3.8 Consensus size: 9
71991572 ATATATAGTA
71991582 TAATTAAACTT
1 TAATT-AAC-T
71991593 TAATTAACT
1 TAATTAACT
71991602 TAATTAACT
1 TAATTAACT
71991611 TAATTAA
1 TAATTAA
71991618 TTACTAACCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 17 0.68
10 3 0.12
11 5 0.20
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.44
Consensus pattern (9 bp):
TAATTAACT
Found at i:71993774 original size:40 final size:40
Alignment explanation
Indices: 71993729--71993855 Score: 136
Period size: 40 Copynumber: 3.2 Consensus size: 40
71993719 CGGAATATAA
71993729 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
* * *
71993769 CCGGATAGAATG-ACT-CGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCA-TGTGCACAAATGCCTTCGGGTCTTAGC
* * *
71993809 CCGGATAT-AGC-CGCTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAGCATG-T-GCACAAATGCCTTCGGGTCTTAGC
71993849 CCGGATA
1 CCGGATA
71993856 AATTTCCAGC
Statistics
Matches: 72, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 68 0.94
41 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGATATAAGCATGTGCACAAATGCCTTCGGGTCTTAGC
Found at i:71997144 original size:53 final size:55
Alignment explanation
Indices: 71997075--71997241 Score: 166
Period size: 53 Copynumber: 3.1 Consensus size: 55
71997065 TTCCTTTTTA
* * * *
71997075 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCGTTAT-G-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATAGT
* * * *
71997128 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATAGT
** * * *
71997183 AGTTTATCAATGCCATGTCTTGACAT-GTCTTACAT--GATTCCTTGCCTTGTAG-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGA-TCCTTGCCTTATAGT
71997235 AACTTAC
1 AACTTAC
71997242 AATAATGCCT
Statistics
Matches: 91, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
52 6 0.07
53 56 0.62
54 10 0.11
55 19 0.21
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (55 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATAGT
Found at i:72001729 original size:2 final size:2
Alignment explanation
Indices: 72001722--72001758 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
72001712 CATTTTAACT
72001722 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
72001759 CACAAATCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:72004237 original size:93 final size:93
Alignment explanation
Indices: 72004125--72004296 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72004115 CGCCCATAAG
* *
72004125 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72004190 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
72004218 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
72004283 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
72004297 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:72004293 original size:46 final size:46
Alignment explanation
Indices: 72004118--72004293 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
72004108 TGTAACCCGC
* * *
72004118 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
72004164 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
72004214 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
72004257 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
72004294 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:72006945 original size:31 final size:29
Alignment explanation
Indices: 72006905--72006987 Score: 102
Period size: 26 Copynumber: 2.9 Consensus size: 29
72006895 AAATTATATC
*
72006905 CGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 CGGGCTAAGACCCGAAGGC-ATTGTGC--GTG
72006937 -GGGCTAAGACCCGAAGGCA-T-T-CGTG
1 CGGGCTAAGACCCGAAGGCATTGTGCGTG
72006962 CGGGCTAAGACCCGAAGGCATTGTGC
1 CGGGCTAAGACCCGAAGGCATTGTGC
72006988 AGTCGTTCTA
Statistics
Matches: 46, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
25 3 0.07
26 19 0.41
27 2 0.04
28 2 0.04
29 2 0.04
30 1 0.02
31 17 0.37
ACGTcount: A:0.24, C:0.23, G:0.35, T:0.18
Consensus pattern (29 bp):
CGGGCTAAGACCCGAAGGCATTGTGCGTG
Found at i:72007013 original size:38 final size:40
Alignment explanation
Indices: 72006962--72007042 Score: 130
Period size: 38 Copynumber: 2.1 Consensus size: 40
72006952 GGCATTCGTG
*
72006962 CGGGCTAAGACCCGAAGGCATT-GTGCA-GTCGTTCTATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCACGTCGTTATATC
*
72007000 CGGGCTAAGACCCGAAGGCATTCGTGCACGTGGTTATATC
1 CGGGCTAAGACCCGAAGGCATTCGTGCACGTCGTTATATC
72007040 CGG
1 CGG
72007043 TTGTATTCCG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
38 22 0.56
39 5 0.13
40 12 0.31
ACGTcount: A:0.21, C:0.26, G:0.31, T:0.22
Consensus pattern (40 bp):
CGGGCTAAGACCCGAAGGCATTCGTGCACGTCGTTATATC
Found at i:72014096 original size:434 final size:427
Alignment explanation
Indices: 72013255--72014107 Score: 1240
Period size: 434 Copynumber: 2.0 Consensus size: 427
72013245 TGTGGTTTCG
72013255 GGACCACAAAACCGAGGCATAAAAATAATTTAAAATTTATTTTGATGCCTATAATATGTGTATGC
1 GGACCACAAAACCGAGGCATAAAAATAATTTAAAATTTATTTTGATGCCTATAATATGTGTATGC
72013320 TCATGTATGACATTTTTTGATGATTGATTTAGTGTTATAAAGGTGAATTCCACTAGAAAGGACTT
66 TCATGTATGACATTTTTTGATGATTGATTTAGTGTTATAAAGGTGAATTCCACTAGAAAGGACTT
*
72013385 AGTAGTGAACTTTGAAAGTACGATAGGGAAATGTGTGATGACTAATTAAAGCATGCATGCAAAAT
131 AGTAGTGAACTTTGAAAGTACGATAGGGAAATGTGTGATGACTAATTAAAGCATGCATGCAAAAC
* **
72013450 AATGGACTTGCATGTCAAATTCCCCCTTTTATAGGTGGTGGCCGGCCATGACATGGTTATGGGCA
196 AATGGACTTGCATGTCAAATTCCCCCTTTTATAGGTGGTGGCCGGCCATGACAAGAATATGGGC-
* * * *
72013515 AAGAAAACATGTTGAAACATGTTTTGTTAATGGAGCATGAAAGAAATGATTAATAATTAGATGTG
260 -A-AAAACATGTTGAAACATGTTTTGTT-ATGGAGCATGAAAGAAATAATAAAAAATAAGATGTG
*
72013580 GGAAGAGAAACAAAAAAAAAATGTGTGTGAGAGTGTAGCATTCCCCCCCCATTGCCGTGCAACTA
322 GGAAGAGAAAAAAAAAAAAAATGTGTGT-AGAGTGTAGCATTCCCCCCCCATTGCCGTGCAACTA
**
72013645 AGAAGGAAAACAAAAATTTTTGTTCATCCTTGTCGGAATTGGTC
386 AGAA-GAAAA-AAAAAAATTTGTTCATCCTTGTCGGAATTGGTC
72013689 GGACCACAAAACCGAGGCATAAAAATAATTTAAAATTTATTTTGATGCCTATAATATGTGTATGC
1 GGACCACAAAACCGAGGCATAAAAATAATTTAAAATTTATTTTGATGCCTATAATATGTGTATGC
*
72013754 TCATGTATGACATTTTTTGATGATTGATTTAGTGTTATAAAGGTGAATTTCACTAGAAAGGACTT
66 TCATGTATGACATTTTTTGATGATTGATTTAGTGTTATAAAGGTGAATTCCACTAGAAAGGACTT
72013819 AGTAGTGAACTTTGAAAGTACGATAGGGAAATGTGTGATGACTAATTAAAGCATGCATGCAAAAC
131 AGTAGTGAACTTTGAAAGTACGATAGGGAAATGTGTGATGACTAATTAAAGCATGCATGCAAAAC
*
72013884 AATGGACTTGCATGTCAAATTCCCCTTTTTATAGGTGGTGGCCGGCCATGACCAAGAATATGGGC
196 AATGGACTTGCATGTCAAATTCCCCCTTTTATAGGTGGTGGCCGGCCATGA-CAAGAATATGGGC
* **
72013949 -TAAACATGTCATGAAACATGTTTTG-T-TGG-GCATTAGGGAGAAATAATAAACAAATAAGCAT
260 AAAAACATGT--TGAAACATGTTTTGTTATGGAGCA-T-GAAAGAAATAATAAA-AAATAAG-AT
* * * *
72014010 G-GGTAAGA-AAAGAATGAAAAAAAAATGTGTGT-GAGTGTGGTA-T-CTCCCCCATTGCCGTG-
319 GTGGGAAGAGAAA-AA--AAAAAAAAATGTGTGTAGAGTGTAGCATTCCCCCCCCATTGCCGTGC
**
72014069 AGTTGTAAAGGAAGAAAGAAAAAAAATTTGTTCATCCTT
381 A--ACT-AA-GAAGAAA-AAAAAAAATTTGTTCATCCTT
72014108 TCTTTGAGCC
Statistics
Matches: 382, Mismatches: 22, Indels: 32
0.88 0.05 0.07
Matches are distributed among these distances:
429 4 0.01
430 19 0.05
431 24 0.06
432 45 0.12
433 21 0.05
434 259 0.68
435 10 0.03
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (427 bp):
GGACCACAAAACCGAGGCATAAAAATAATTTAAAATTTATTTTGATGCCTATAATATGTGTATGC
TCATGTATGACATTTTTTGATGATTGATTTAGTGTTATAAAGGTGAATTCCACTAGAAAGGACTT
AGTAGTGAACTTTGAAAGTACGATAGGGAAATGTGTGATGACTAATTAAAGCATGCATGCAAAAC
AATGGACTTGCATGTCAAATTCCCCCTTTTATAGGTGGTGGCCGGCCATGACAAGAATATGGGCA
AAAACATGTTGAAACATGTTTTGTTATGGAGCATGAAAGAAATAATAAAAAATAAGATGTGGGAA
GAGAAAAAAAAAAAAAATGTGTGTAGAGTGTAGCATTCCCCCCCCATTGCCGTGCAACTAAGAAG
AAAAAAAAAAATTTGTTCATCCTTGTCGGAATTGGTC
Found at i:72015442 original size:40 final size:40
Alignment explanation
Indices: 72015315--72015444 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
72015305 ATGCTGGAAA
* *
72015315 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
72015355 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
72015395 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
72015435 TTATATCCGG
1 TTATATCCGG
72015445 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:72023363 original size:38 final size:39
Alignment explanation
Indices: 72023313--72023390 Score: 115
Period size: 38 Copynumber: 2.0 Consensus size: 39
72023303 TGCAAGGATC
*
72023313 GGCTAAACCCGAAGGCATT-GTGCA-GTCGTTCTATCCG
1 GGCTAAACCCGAAGGCATTCGTGCACGTCGTTATATCCG
*
72023350 GGCTAAGACCCGAAGGCATTCGTGCACGTGGTTATATCCG
1 GGCTAA-ACCCGAAGGCATTCGTGCACGTCGTTATATCCG
72023390 G
1 G
72023391 TTGTATTCCG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
37 6 0.17
38 13 0.36
39 5 0.14
40 12 0.33
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (39 bp):
GGCTAAACCCGAAGGCATTCGTGCACGTCGTTATATCCG
Found at i:72027079 original size:40 final size:40
Alignment explanation
Indices: 72027022--72027198 Score: 340
Period size: 40 Copynumber: 4.5 Consensus size: 40
72027012 CTTGCAAATC
72027022 GGTCTTAG-CCGGATATATCAACTCGCACGAATGCCTTCG
1 GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCG
72027061 GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCG
1 GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCG
72027101 GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCG
1 GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCG
72027141 GGTCTTAG-CCGGATATATCAACTCGCACGAATGCCTTCG
1 GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCG
72027180 GGTCTTAGCCCGGATATAT
1 GGTCTTAGCCCGGATATAT
72027199 TTCCAATGTT
Statistics
Matches: 136, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
39 47 0.35
40 89 0.65
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCG
Found at i:72027166 original size:79 final size:80
Alignment explanation
Indices: 72027022--72027198 Score: 340
Period size: 79 Copynumber: 2.2 Consensus size: 80
72027012 CTTGCAAATC
72027022 GGTCTTAG-CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
72027086 GCACGAATGCCTTCG
66 GCACGAATGCCTTCG
72027101 GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAG-CCGGATATATCAACTC
1 GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
72027165 GCACGAATGCCTTCG
66 GCACGAATGCCTTCG
72027180 GGTCTTAGCCCGGATATAT
1 GGTCTTAGCCCGGATATAT
72027199 TTCCAATGTT
Statistics
Matches: 97, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
79 58 0.60
80 39 0.40
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (80 bp):
GGTCTTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
GCACGAATGCCTTCG
Found at i:72035231 original size:40 final size:40
Alignment explanation
Indices: 72035123--72035372 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
72035113 CGGGATTTAA
* * * * *
72035123 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72035163 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72035203 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72035243 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72035283 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72035323 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72035363 CCGGATATAT
1 CCGGATATAT
72035373 TCCAATGTTC
Statistics
Matches: 193, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 192 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72052369 original size:33 final size:33
Alignment explanation
Indices: 72052294--72052376 Score: 94
Period size: 33 Copynumber: 2.5 Consensus size: 33
72052284 CTATTTGCAT
*
72052294 ACTGTTACTGTAATGGGCCCAGGCCCAGACTGCC
1 ACTGTTACTGTAAT-GGCCCAGGCCCAGACTGAC
* * * *
72052328 ACTATTACTGTAATGGCTCTGGCCCAGACTGAT
1 ACTGTTACTGTAATGGCCCAGGCCCAGACTGAC
* *
72052361 ATTGTTACTGAAATGG
1 ACTGTTACTGTAATGG
72052377 GTTAAGGCCC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 28 0.68
34 13 0.32
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (33 bp):
ACTGTTACTGTAATGGCCCAGGCCCAGACTGAC
Found at i:72069698 original size:34 final size:34
Alignment explanation
Indices: 72069660--72069728 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
72069650 TCCAATATCT
*
72069660 GTGTGGGCCTTAGCCCATTACAGTAACAGCATCA
1 GTGTGGGCCTTAACCCATTACAGTAACAGCATCA
* * *
72069694 GTGTGGGTCTTAACCTATTACAGTAACAGTATCA
1 GTGTGGGCCTTAACCCATTACAGTAACAGCATCA
72069728 G
1 G
72069729 AAATGCATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (34 bp):
GTGTGGGCCTTAACCCATTACAGTAACAGCATCA
Found at i:72080489 original size:28 final size:26
Alignment explanation
Indices: 72080453--72080505 Score: 88
Period size: 28 Copynumber: 2.0 Consensus size: 26
72080443 AAGCATTGAA
72080453 ATATTCTTAATAATAATTTTATATTAAT
1 ATATTCTTAATAATAA--TTATATTAAT
72080481 ATATTCTTAATAATAATTATATTAA
1 ATATTCTTAATAATAATTATATTAA
72080506 GAATGTTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 9 0.36
28 16 0.64
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (26 bp):
ATATTCTTAATAATAATTATATTAAT
Found at i:72080494 original size:14 final size:14
Alignment explanation
Indices: 72080453--72080495 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
72080443 AAGCATTGAA
72080453 ATATTCTTAATAAT
1 ATATTCTTAATAAT
72080467 A-ATT-TTATATTAAT
1 ATATTCTTA-A-TAAT
72080481 ATATTCTTAATAAT
1 ATATTCTTAATAAT
72080495 A
1 A
72080496 ATTATATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 3 0.12
13 4 0.16
14 11 0.44
15 4 0.16
16 3 0.12
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (14 bp):
ATATTCTTAATAAT
Found at i:72080641 original size:25 final size:26
Alignment explanation
Indices: 72080592--72080641 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
72080582 GTTTTTATTT
*
72080592 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
72080618 TTATTAAAATTTA-ATAACAATAAT
1 TTATTAAAATATATATAACAATAAT
72080642 TATCTACCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:72080803 original size:16 final size:16
Alignment explanation
Indices: 72080784--72080845 Score: 70
Period size: 16 Copynumber: 3.9 Consensus size: 16
72080774 TGATTATAGT
72080784 TCTATTCCATTACAAC
1 TCTATTCCATTACAAC
*
72080800 TCTATTCCATTACAGC
1 TCTATTCCATTACAAC
* * *
72080816 TATATTCAATTGCAAC
1 TCTATTCCATTACAAC
* *
72080832 CCTATTTCATTACA
1 TCTATTCCATTACA
72080846 GTGAACCAAA
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.31, C:0.27, G:0.03, T:0.39
Consensus pattern (16 bp):
TCTATTCCATTACAAC
Found at i:72080837 original size:32 final size:32
Alignment explanation
Indices: 72080786--72080846 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
72080776 ATTATAGTTC
* *
72080786 TATTCCATTACAACTCTATTCCATTACAGCTA
1 TATTCAATTACAACCCTATTCCATTACAGCTA
* *
72080818 TATTCAATTGCAACCCTATTTCATTACAG
1 TATTCAATTACAACCCTATTCCATTACAG
72080847 TGAACCAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.38
Consensus pattern (32 bp):
TATTCAATTACAACCCTATTCCATTACAGCTA
Found at i:72086986 original size:3 final size:3
Alignment explanation
Indices: 72086980--72087014 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
72086970 TAGCTATCAT
*
72086980 CAC CAC CAA CAC CAC CAC CAC CAC CAC CAC CAC CA
1 CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CAC CA
72087015 TCATCATCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.37, C:0.63, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:72087030 original size:3 final size:3
Alignment explanation
Indices: 72087024--72087085 Score: 106
Period size: 3 Copynumber: 20.7 Consensus size: 3
72087014 ATCATCATCA
* *
72087024 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCA TCG TCG TCT TCG TCG
1 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG
72087072 TCG TCG TCG TCG TC
1 TCG TCG TCG TCG TC
72087086 ATCATAGTAG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.02, C:0.34, G:0.29, T:0.35
Consensus pattern (3 bp):
TCG
Found at i:72101694 original size:15 final size:16
Alignment explanation
Indices: 72101674--72101703 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72101664 TCTCTTAATA
72101674 TACACTTCTT-TTTCT
1 TACACTTCTTATTTCT
72101689 TACACTTCTTATTTC
1 TACACTTCTTATTTC
72101704 ATATGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.27, G:0.00, T:0.57
Consensus pattern (16 bp):
TACACTTCTTATTTCT
Found at i:72102692 original size:55 final size:53
Alignment explanation
Indices: 72102555--72102700 Score: 177
Period size: 53 Copynumber: 2.7 Consensus size: 53
72102545 TTTTCCTTTT
* * *
72102555 TGAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTACCATTGCCTTA
* * * * *
72102608 TGAACTCACCAATGCCATGCCATGGCATGGTTTTACATAGG-ACCTTTGCCTTA
1 TGAACTCACCAATGCCATGTCTTGACATGGTCTTACAT-GGTACCATTGCCTTA
*
72102661 TAGTAACTCATCAATGCCATGTCTTGACATGGTCTTACAT
1 T-G-AACTCACCAATGCCATGTCTTGACATGGTCTTACAT
72102701 TATTTCCTTG
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 43 0.56
54 3 0.04
55 31 0.40
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (53 bp):
TGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGTACCATTGCCTTA
Found at i:72102712 original size:55 final size:54
Alignment explanation
Indices: 72102556--72102722 Score: 178
Period size: 55 Copynumber: 3.1 Consensus size: 54
72102546 TTTCCTTTTT
* * ** *
72102556 GAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTAT-
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATTATATCCTTGCCTTATA
* * * * *
72102609 GAACTCACCAATGCCATGCCATGGCATGGTTTTACA-TAGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGTCTTGACATGGTCTTACATTA-TATCC-TTGCCTTATA
* *
72102663 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATTATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATTATATCCTTGCCTTATA
72102718 GAACT
1 GAACT
72102723 TATTACATGA
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
52 1 0.01
53 40 0.44
54 5 0.05
55 41 0.45
56 4 0.04
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (54 bp):
GAACTCACCAATGCCATGTCTTGACATGGTCTTACATTATATCCTTGCCTTATA
Found at i:72102836 original size:47 final size:47
Alignment explanation
Indices: 72102725--72102838 Score: 183
Period size: 47 Copynumber: 2.4 Consensus size: 47
72102715 ATAGAACTTA
* * *
72102725 TTACATGATATCCTTATCTTACCAAATGACATGTTCCAAATATGGTC
1 TTACATGGTATCCTTGTCTTACCAAATGACATGTTCCAAACATGGTC
*
72102772 TTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAACATGGTC
1 TTACATGGTATCCTTGTCTTACCAAATGACATGTTCCAAACATGGTC
*
72102819 TTACATGGTATCATTGTCTT
1 TTACATGGTATCCTTGTCTT
72102839 CGTGCCAATG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (47 bp):
TTACATGGTATCCTTGTCTTACCAAATGACATGTTCCAAACATGGTC
Found at i:72103291 original size:13 final size:13
Alignment explanation
Indices: 72103273--72103318 Score: 92
Period size: 13 Copynumber: 3.5 Consensus size: 13
72103263 TCTTGTTATC
72103273 ATACAAAGCCATA
1 ATACAAAGCCATA
72103286 ATACAAAGCCATA
1 ATACAAAGCCATA
72103299 ATACAAAGCCATA
1 ATACAAAGCCATA
72103312 ATACAAA
1 ATACAAA
72103319 ATATGGTCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.57, C:0.22, G:0.07, T:0.15
Consensus pattern (13 bp):
ATACAAAGCCATA
Done.