Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 236 of 425
Found at i:72106140 original size:21 final size:21
Alignment explanation
Indices: 72106106--72106145 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
72106096 AATGGTCATG
*
72106106 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
**
72106127 GATGATTTGCGAGTCACTT
1 GATGATTTAAGAGTCACTT
72106146 GTTGTTTAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:72106669 original size:28 final size:28
Alignment explanation
Indices: 72106636--72106690 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
72106626 ATTGCATGAC
72106636 TATGAATGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
72106664 TATGAATGTGATTGGGCCTGATGGGCC
1 TATGAATGTGATTGGGCCTGATGGGCC
72106691 CAAACGAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.20, C:0.15, G:0.36, T:0.29
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:72108705 original size:39 final size:39
Alignment explanation
Indices: 72108651--72108794 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
72108641 GAATGTTCGA
72108651 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * * *
72108690 GTGATACCCAGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
72108729 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
72108768 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
72108795 CTTTGTGCGG
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 84 0.90
40 9 0.10
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:72108741 original size:78 final size:79
Alignment explanation
Indices: 72108652--72108803 Score: 252
Period size: 78 Copynumber: 1.9 Consensus size: 79
72108642 AATGTTCGAG
72108652 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCAGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCAGGCTAAGTCCCGAAGGC
72108716 AATTGTGCGAGTTA
66 AATTGTGCGAGTTA
* * *
72108730 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCAGGCTAAGTCCCGAAGGC
**
72108795 CTTTGTGCG
66 AATTGTGCG
72108804 GGTTCCATAA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
78 52 0.76
79 16 0.24
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (79 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCAGGCTAAGTCCCGAAGGC
AATTGTGCGAGTTA
Found at i:72108818 original size:78 final size:78
Alignment explanation
Indices: 72108658--72108833 Score: 237
Period size: 78 Copynumber: 2.2 Consensus size: 78
72108648 CGAGTGATAT
72108658 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCAGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCAGGCTAAGCCCGAAGGCAATTGTG
** *
72108723 CGAGTTATGATAT
66 CGAGTTACCATAA
* * * **
72108736 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGCCTTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCAGGCTAAG-CCCGAAGGCAATTGT
*
72108801 GCGGGTT-CCATAA
65 GCGAGTTACCATAA
*
72108814 CCGGGCTATGTCCCGAAGGC
1 CCGGGCTAAG-CCCGAAGGC
72108834 GTTTGAACGA
Statistics
Matches: 86, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
78 58 0.67
79 28 0.33
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCAGGCTAAGCCCGAAGGCAATTGTG
CGAGTTACCATAA
Found at i:72114056 original size:27 final size:27
Alignment explanation
Indices: 72114018--72114075 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
72114008 TCGTTCTTCA
72114018 ACTTAGCATTCTTGCTAGGCGGGAAAT
1 ACTTAGCATTCTTGCTAGGCGGGAAAT
72114045 ACTTAGCATTCTTGCTAGGCGGGAAAT
1 ACTTAGCATTCTTGCTAGGCGGGAAAT
72114072 ACTT
1 ACTT
72114076 CATAAGGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (27 bp):
ACTTAGCATTCTTGCTAGGCGGGAAAT
Found at i:72117086 original size:43 final size:43
Alignment explanation
Indices: 72116951--72117116 Score: 140
Period size: 43 Copynumber: 3.9 Consensus size: 43
72116941 ATAAGCTCGT
* * * * *
72116951 ACAATGCC-ATATCCCAGATATGGTCTTAGATGTTAT-CACATA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCCA-ATA
* * * * * * *
72116993 TCGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCGATTA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCCAATA
* *
72117036 ACGATGCCAATGTCCCAAACATGGTCTTACACGTAATCTCAAT-
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC-CAATA
** *
72117079 ACAATGCCAATGTCCTGGACATGGTCTTACATGTAATC
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
72117117 ACATCTCAAT
Statistics
Matches: 97, Mismatches: 24, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
42 6 0.06
43 88 0.91
44 3 0.03
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (43 bp):
ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCCAATA
Found at i:72124702 original size:43 final size:42
Alignment explanation
Indices: 72124612--72124733 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
72124602 TCACATATTG
* * * * *
72124612 ATGCCACTGTCCTAGACAGGGTTTTACACGAAATCGATTAACG
1 ATGCCAATGTCCTAGACATGGTCTTACACGTAATC-ATTAACA
*
72124655 ATGCCAATGTCCTAAACATGGTCTTACACGTAATC-TTAATACA
1 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCATT-A-ACA
* *
72124698 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCA
1 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCA
72124734 CATCTCAATA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
41 2 0.03
42 1 0.01
43 64 0.96
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCAATGTCCTAGACATGGTCTTACACGTAATCATTAACA
Found at i:72128002 original size:26 final size:26
Alignment explanation
Indices: 72127964--72128017 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
72127954 GGAAGTGTAC
72127964 TGTTACTGATACTGGCACCTTTGCTA
1 TGTTACTGATACTGGCACCTTTGCTA
* **
72127990 TGTTACTGTTACTGGCAGTTTTGCTA
1 TGTTACTGATACTGGCACCTTTGCTA
72128016 TG
1 TG
72128018 ATATTGGTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.43
Consensus pattern (26 bp):
TGTTACTGATACTGGCACCTTTGCTA
Found at i:72130970 original size:40 final size:39
Alignment explanation
Indices: 72130912--72131098 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 39
72130902 TTCGAATGAT
* * * *
72130912 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT
1 ATCCGGACTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAA
72130952 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
*
72130992 ATCCGGACTAAGATCCGAAGGCATTTGCGCGAGTTACTAA
1 ATCCGGACTAAG-TCCGAAGGCATTTGTGCGAGTTACTAA
** *
72131032 ATCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGCTACTATA
1 ATCCGGACTAAGTC-CGAAGGCATTTGTGCGAGTTACTA-A
* * *
72131073 A-CCGGGCTATGTCCCGAAGGTATTTG
1 ATCCGGACTAAGT-CCGAAGGCATTTG
72131099 AACGAGTAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
39 2 0.02
40 117 0.90
41 11 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
ATCCGGACTAAGTCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:72131090 original size:80 final size:81
Alignment explanation
Indices: 72130912--72131098 Score: 222
Period size: 80 Copynumber: 2.3 Consensus size: 81
72130902 TTCGAATGAT
* *
72130912 ATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAT
*
72130976 TTGTGCGAGTTACTAA
66 TTGTGCGAGCTACTAA
* * * **
72130992 ATCCGGACTAAGAT-CCGAAGGCATTTGCGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGC
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGCGCTAAGTGACTAAATCCGGACTAAGATC-CGAAGGC
72131054 ATTTGTGCGAGCTACTATA
64 ATTTGTGCGAGCTACTA-A
* *
72131073 A-CCGGGCTATGTCCCGAAGGTATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
72131099 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
79 3 0.03
80 79 0.87
81 9 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (81 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGCGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCAT
TTGTGCGAGCTACTAA
Found at i:72138777 original size:29 final size:28
Alignment explanation
Indices: 72138706--72138786 Score: 81
Period size: 28 Copynumber: 2.9 Consensus size: 28
72138696 TACCTATATC
* * * *
72138706 TGGCCCATTAAGCCCAATTATATTCATA
1 TGGCCCATTAGGCCCAATCACATTTATA
*
72138734 TGGCCCATTATGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTTATA
* * *
72138763 TGTCCCGTTAGGCCCAGTCACATT
1 TGGCCCATTAGGCCCAATCACATT
72138787 CATAATCATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
28 22 0.50
29 22 0.50
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTTATA
Found at i:72140794 original size:20 final size:21
Alignment explanation
Indices: 72140766--72140804 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
72140756 GTTACATTTC
72140766 ACGAACTCGG-ACTCAAATCA
1 ACGAACTCGGAACTCAAATCA
*
72140786 ACGAGCTCGGAACTCAAAT
1 ACGAACTCGGAACTCAAAT
72140805 ATCCTAGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.28, G:0.18, T:0.15
Consensus pattern (21 bp):
ACGAACTCGGAACTCAAATCA
Found at i:72149564 original size:49 final size:50
Alignment explanation
Indices: 72149487--72149615 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 50
72149477 GGGTATAATA
* * * *
72149487 CCGATGCCATGTCCCAGACATTGTCTTACACT-GACTAATGA-A-ATCGAGG
1 CCGACGCCATGTCCCAGACATGGTCTTACACTAG-CT-ATCACATATCCAGG
* * *
72149536 CTGACGCCATGTCCCAGACATGGTCTTACACTAGCTTTCACATATCCATG
1 CCGACGCCATGTCCCAGACATGGTCTTACACTAGCTATCACATATCCAGG
*
72149586 CCGATGCCATGTCCCAGACATGGTCTTACA
1 CCGACGCCATGTCCCAGACATGGTCTTACA
72149616 TGAACACATC
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
48 2 0.03
49 32 0.47
50 34 0.50
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (50 bp):
CCGACGCCATGTCCCAGACATGGTCTTACACTAGCTATCACATATCCAGG
Found at i:72156539 original size:40 final size:39
Alignment explanation
Indices: 72156412--72156541 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
72156402 ATGCTGGAAA
* *
72156412 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
72156452 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
72156492 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
72156532 TTATATCCGG
1 TTATATCCGG
72156542 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:72164594 original size:40 final size:39
Alignment explanation
Indices: 72164467--72164596 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
72164457 ATGCTGGAAA
* * *
72164467 TTATATCCAGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
72164507 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
72164547 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
72164587 TTATATCCGG
1 TTATATCCGG
72164597 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:72166820 original size:18 final size:19
Alignment explanation
Indices: 72166785--72166822 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
72166775 AGAATTAGCC
72166785 AAATGGGCCAGAATGGGCT
1 AAATGGGCCAGAATGGGCT
*
72166804 AAATGGGCCTG-ATGGGCT
1 AAATGGGCCAGAATGGGCT
72166822 A
1 A
72166823 TTGGGCCCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.29, C:0.16, G:0.37, T:0.18
Consensus pattern (19 bp):
AAATGGGCCAGAATGGGCT
Found at i:72166935 original size:29 final size:28
Alignment explanation
Indices: 72166902--72166995 Score: 84
Period size: 29 Copynumber: 3.3 Consensus size: 28
72166892 ATAATATCAT
*
72166902 TTGGGCCTAATGGGCCATATGAATGTGAA
1 TTGGGCCTAATGGGCCAT-TGAATATGAA
* * *
72166931 TTGGGCTTAGTTGGCCATTAGAATATGAA
1 TTGGGCCTAATGGGCCATT-GAATATGAA
* *
72166960 CTGGGCC-AGATGGGCCATTTGAATAAG-A
1 TTGGGCCTA-ATGGGCCA-TTGAATATGAA
72166988 TTGGGCCT
1 TTGGGCCT
72166996 GGTGGGCATA
Statistics
Matches: 51, Mismatches: 10, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
28 9 0.18
29 40 0.78
30 2 0.04
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.29
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATTGAATATGAA
Found at i:72191365 original size:34 final size:34
Alignment explanation
Indices: 72191283--72191387 Score: 106
Period size: 34 Copynumber: 3.0 Consensus size: 34
72191273 CTCTTTGTTC
72191283 GCATACTGTACTGAAATGGGCTAAGGCCCAAACT
1 GCATACTGTACTGAAATGGGCTAAGGCCCAAACT
* * *
72191317 GCCT-CTGGTGCTGAAATGGGCTCAGGCCCAAACT
1 GCATACT-GTACTGAAATGGGCTAAGGCCCAAACT
* * *
72191351 G-ATACTGTTTCTGAAAAAGGGCCTAAGGCCCTAACT
1 GCATACTG-TACTG-AAATGGG-CTAAGGCCCAAACT
72191387 G
1 G
72191388 GAATTAACGA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
33 4 0.07
34 35 0.60
35 6 0.10
36 13 0.22
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.22
Consensus pattern (34 bp):
GCATACTGTACTGAAATGGGCTAAGGCCCAAACT
Found at i:72198798 original size:128 final size:128
Alignment explanation
Indices: 72198570--72198819 Score: 482
Period size: 128 Copynumber: 2.0 Consensus size: 128
72198560 CACTATTTAT
*
72198570 AATAAAACTATCTATCAGCGTAACAGTCACTAAATTAATTATAACTCGAGTTACGAAACTCAAAA
1 AATAAAACTATCTATCAGCGTAACAGTCACTAAATTAAATATAACTCGAGTTACGAAACTCAAAA
72198635 TTTAAATCCGTAAATTTTTCCTGAAACTAGACTCATATATCTTCTTACCATAAAGTTAATTAC
66 TTTAAATCCGTAAATTTTTCCTGAAACTAGACTCATATATCTTCTTACCATAAAGTTAATTAC
*
72198698 AATAAAACTATCTATCTGCGTAACAGTCACTAAATTAAATATAACTCGAGTTACGAAACTCAAAA
1 AATAAAACTATCTATCAGCGTAACAGTCACTAAATTAAATATAACTCGAGTTACGAAACTCAAAA
72198763 TTTAAATCCGTAAATTTTTCCTGAAACTAGACTCATATATCTTCTTACCATAAAGTT
66 TTTAAATCCGTAAATTTTTCCTGAAACTAGACTCATATATCTTCTTACCATAAAGTT
72198820 CCCATAATTT
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 120 1.00
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (128 bp):
AATAAAACTATCTATCAGCGTAACAGTCACTAAATTAAATATAACTCGAGTTACGAAACTCAAAA
TTTAAATCCGTAAATTTTTCCTGAAACTAGACTCATATATCTTCTTACCATAAAGTTAATTAC
Found at i:72199882 original size:55 final size:53
Alignment explanation
Indices: 72199759--72199949 Score: 166
Period size: 55 Copynumber: 3.5 Consensus size: 53
72199749 CCATTTCCAC
* * *
72199759 GTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCATCATTGCCAT
1 GTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCATCAATGCCAT
* * * ** *
72199812 GCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATGCCAT
1 GTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G-AACTCATCAATGCCAT
*** * * * * *
72199867 GTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAGAACTTACCAAGGCAAT
1 GTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-GAACTCATCAATGCCAT
* * * *
72199921 GCCTTGGCATGGTCTTACTTGGTATCCTT
1 GTCTTGACATGGTCTTACATGGGATCCTT
72199950 AAACCCTAAT
Statistics
Matches: 110, Mismatches: 26, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 31 0.28
54 36 0.33
55 43 0.39
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (53 bp):
GTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCATCAATGCCAT
Found at i:72203515 original size:27 final size:27
Alignment explanation
Indices: 72203475--72203579 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
72203465 AAGACCTCCA
72203475 ATTTGTAAAATTACTGAAATACCCCCT
1 ATTTGTAAAATTACTGAAATACCCCCT
** *
72203502 GGTTGTAAAATTACCGAAATA-CCCCT
1 ATTTGTAAAATTACTGAAATACCCCCT
* * * * *
72203528 AATTTGTGAAATTATTGAAATATCCTCA
1 -ATTTGTAAAATTACTGAAATACCCCCT
*
72203556 ATTTTTAAAATTACTGAAATACCC
1 ATTTGTAAAATTACTGAAATACCC
72203580 TTGTAACGTA
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
26 5 0.08
27 54 0.87
28 3 0.05
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (27 bp):
ATTTGTAAAATTACTGAAATACCCCCT
Found at i:72203591 original size:27 final size:27
Alignment explanation
Indices: 72203561--72203650 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
72203551 CCTCAATTTT
* * *
72203561 TAAAATTACTGAAATACCCTTGTAACG
1 TAAAATGACCGAAATACCCCTGTAACG
* **
72203588 TAAAATGACCGTAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCTGTAACG
**
72203615 TAAAATGACC-ATAATACCCCTGTATGG
1 TAAAATGACCGA-AATACCCCTGTAACG
72203642 TAAAATGAC
1 TAAAATGAC
72203651 GATTATGCCC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.26
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCTGTAACG
Found at i:72204067 original size:33 final size:33
Alignment explanation
Indices: 72204030--72204127 Score: 133
Period size: 33 Copynumber: 3.0 Consensus size: 33
72204020 TAGGCCACAT
* *
72204030 TGTTACTGTATAGGGCTAAAGCCCAAACTATTC
1 TGTTACTGTATAGGGCTAAGGCCCAGACTATTC
* *
72204063 TGTTACTGTATAGGGTTAAGGCCCAGACTATAC
1 TGTTACTGTATAGGGCTAAGGCCCAGACTATTC
* * *
72204096 TGATACTGGATAGGGCTCAGGCCCAGACTATT
1 TGTTACTGTATAGGGCTAAGGCCCAGACTATT
72204128 ACTGCATACA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (33 bp):
TGTTACTGTATAGGGCTAAGGCCCAGACTATTC
Found at i:72205585 original size:18 final size:18
Alignment explanation
Indices: 72205562--72205609 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
72205552 CGACCCATTA
*
72205562 TAGTAACAGTAAATAGTG
1 TAGTAACAGTAAACAGTG
72205580 TAGTAACAGTAAACAGTG
1 TAGTAACAGTAAACAGTG
* *
72205598 CAGTAAGAGTAA
1 TAGTAACAGTAA
72205610 GCAGAATGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.46, C:0.08, G:0.23, T:0.23
Consensus pattern (18 bp):
TAGTAACAGTAAACAGTG
Found at i:72205998 original size:27 final size:27
Alignment explanation
Indices: 72205968--72206053 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
72205958 ATTTTCCATG
*
72205968 TAGGGGCATTTCGGTCATTTTACCAAC
1 TAGGGGCATTTCAGTCATTTTACCAAC
** * **
72205995 TA-GGGCAAAAT-AGTCAGTTTACCATG
1 TAGGGGC-ATTTCAGTCATTTTACCAAC
72206021 TAGGGGCATTTCAGTCATTTTACCAAC
1 TAGGGGCATTTCAGTCATTTTACCAAC
72206048 TAGGGG
1 TAGGGG
72206054 GTCTAGGTAC
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
26 19 0.42
27 26 0.58
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (27 bp):
TAGGGGCATTTCAGTCATTTTACCAAC
Found at i:72206000 original size:26 final size:26
Alignment explanation
Indices: 72205971--72206052 Score: 85
Period size: 26 Copynumber: 3.1 Consensus size: 26
72205961 TTCCATGTAG
*
72205971 GGGCATTTCGGTCATTTTACCAACTA
1 GGGCATTTCAGTCATTTTACCAACTA
** * **
72205997 GGGCAAAAT-AGTCAGTTTACCATGTA
1 GGGC-ATTTCAGTCATTTTACCAACTA
72206023 GGGGCATTTCAGTCATTTTACCAACTA
1 -GGGCATTTCAGTCATTTTACCAACTA
72206050 GGG
1 GGG
72206053 GGTCTAGGTA
Statistics
Matches: 42, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
26 22 0.52
27 20 0.48
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
GGGCATTTCAGTCATTTTACCAACTA
Found at i:72206022 original size:53 final size:53
Alignment explanation
Indices: 72205948--72206052 Score: 174
Period size: 53 Copynumber: 2.0 Consensus size: 53
72205938 ACATAGGGGA
* *
72205948 AAAACAGTCAATTTTCCATGTAGGGGCATTTCGGTCATTTTACCAACTAGGGC
1 AAAACAGTCAATTTACCATGTAGGGGCATTTCAGTCATTTTACCAACTAGGGC
* *
72206001 AAAATAGTCAGTTTACCATGTAGGGGCATTTCAGTCATTTTACCAACTAGGG
1 AAAACAGTCAATTTACCATGTAGGGGCATTTCAGTCATTTTACCAACTAGGG
72206053 GGTCTAGGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (53 bp):
AAAACAGTCAATTTACCATGTAGGGGCATTTCAGTCATTTTACCAACTAGGGC
Found at i:72206295 original size:17 final size:17
Alignment explanation
Indices: 72206273--72206308 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
72206263 TTACCCATGT
72206273 GGGGCCTACAAGCCTGC
1 GGGGCCTACAAGCCTGC
*
72206290 GGGGCCTACAAGCTTGC
1 GGGGCCTACAAGCCTGC
72206307 GG
1 GG
72206309 TCCAGCATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.31, G:0.39, T:0.14
Consensus pattern (17 bp):
GGGGCCTACAAGCCTGC
Found at i:72209009 original size:41 final size:41
Alignment explanation
Indices: 72208963--72209098 Score: 177
Period size: 41 Copynumber: 3.3 Consensus size: 41
72208953 TGCGTAGCAG
* *
72208963 GCCGGTGAATTATATCAGGCTTATTGCCTAGCAAGCTTTAC
1 GCCGGTGTATTATTTCAGGCTTATTGCCTAGCAAGCTTTAC
* * *
72209004 GCCGGTGTATTATTTTAGGCTTATTGCCTAGCAGGCTTTAT
1 GCCGGTGTATTATTTCAGGCTTATTGCCTAGCAAGCTTTAC
* *
72209045 GCCGGTGTATTATTTCAGGCCTATTGCCTAGCAGGCTCTGTA-
1 GCCGGTGTATTATTTCAGGCTTATTGCCTAGCAAGCT-T-TAC
72209087 -CCGGTGTATTAT
1 GCCGGTGTATTAT
72209099 ACTAGGCTTT
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
41 83 0.97
42 1 0.01
43 2 0.02
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (41 bp):
GCCGGTGTATTATTTCAGGCTTATTGCCTAGCAAGCTTTAC
Found at i:72209126 original size:82 final size:81
Alignment explanation
Indices: 72208963--72209127 Score: 190
Period size: 82 Copynumber: 2.0 Consensus size: 81
72208953 TGCGTAGCAG
* **
72208963 GCCGGTGAATTATATCAGGCTTATTGCCTAGCAAGCTTTACGCCGGTGTATTATTTTAGGCTTAT
1 GCCGGTGAATTATATCAGGCCTATTGCCTAGCAAGCTTTAC-CCGGTGTATTATACTAGGCTTAT
**
72209028 TGCCTAGCAGGCTTTAT
65 TGCCTAGCAAACTTTAT
* * *
72209045 GCCGGTGTATTATTTCAGGCCTATTGCCTAGCAGGCTCTGTA-CCGGTGTATTATACTAGGCTT-
1 GCCGGTGAATTATATCAGGCCTATTGCCTAGCAAGCT-T-TACCCGGTGTATTATACTAGGCTTA
* *
72209108 TATGCCTTGCAAATTTTAT
64 T-TGCCTAGCAAACTTTAT
72209127 G
1 G
72209128 TGAGTAATGA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
81 1 0.01
82 66 0.94
83 1 0.01
84 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (81 bp):
GCCGGTGAATTATATCAGGCCTATTGCCTAGCAAGCTTTACCCGGTGTATTATACTAGGCTTATT
GCCTAGCAAACTTTAT
Found at i:72210216 original size:17 final size:18
Alignment explanation
Indices: 72210185--72210221 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 18
72210175 ACTTCTAAAT
72210185 TATTTTTGTTGTGTT-TG
1 TATTTTTGTTGTGTTGTG
72210202 TATTTTTGATT-TGTTGTG
1 TATTTTTG-TTGTGTTGTG
72210220 TA
1 TA
72210222 AGTGAAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.11, C:0.00, G:0.22, T:0.68
Consensus pattern (18 bp):
TATTTTTGTTGTGTTGTG
Found at i:72224602 original size:48 final size:48
Alignment explanation
Indices: 72224542--72224814 Score: 217
Period size: 48 Copynumber: 5.7 Consensus size: 48
72224532 TATGTGTGCT
* * * * *
72224542 AGTGTAAAACCATGTTTGGAACATGGCATTGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
***** * *
72224590 AGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTA-CGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATG-AGAGCC
* * **
72224638 AGTGTAAGACCATGTCTGGGATATGGCGTCAACCACAATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
* * * * ** * ** *
72224686 AGTGTAAGACCATGTTTGGAACATGGAATCGG-TATTGAGACAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAATATGAGAGCC
* * * * * *
72224734 AGTGTAAGATCATGTCTGGGACATAGCATTGGCCTCAACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
*
72224782 AGTGTAAGACCATGTGTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
72224815 AATTTACCCT
Statistics
Matches: 165, Mismatches: 56, Indels: 8
0.72 0.24 0.03
Matches are distributed among these distances:
47 2 0.01
48 162 0.98
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCC
Found at i:72224693 original size:96 final size:95
Alignment explanation
Indices: 72224529--72224813 Score: 329
Period size: 96 Copynumber: 3.0 Consensus size: 95
72224519 GACATTGGAG
* * * * *
72224529 TGATATGTGTGCTAGTGTAAAACCATGTTTGGAACATGGCATTGGCCACATTATGAGAGCCAGTG
1 TGATATGT-AGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACAATATGAGAGCCAGTG
*
72224594 TAAGACCATGTCTGGGACATGGCATCGGTGT
65 TAAGACCATGTCTGGGACATGGCATCGGTAT
* * ***
72224625 TGATATGTACGCTAGTGTAAGACCATGTCTGGGATATGGCGTCAACCACAATATGAGAGCCAGTG
1 TGATATGTA-GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACAATATGAGAGCCAGTG
* * *
72224690 TAAGACCATGTTTGGAACATGGAATCGGTAT
65 TAAGACCATGTCTGGGACATGGCATCGGTAT
* * * * * * *
72224721 TGAGACAAG-AGCTAGTGTAAGATCATGTCTGGGACATAGCATTGGCCTCAACATGTGAGCCAGT
1 T--GATATGTAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACAATATGAGAGCCAGT
*
72224785 GTAAGACCATGTGTGGGACATGGCATCGG
64 GTAAGACCATGTCTGGGACATGGCATCGG
72224814 CAATTTACCC
Statistics
Matches: 157, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
96 152 0.97
97 1 0.01
98 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (95 bp):
TGATATGTAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCACAATATGAGAGCCAGTGT
AAGACCATGTCTGGGACATGGCATCGGTAT
Found at i:72226409 original size:37 final size:37
Alignment explanation
Indices: 72226346--72226454 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
72226336 AGCTCAGACG
* * *
72226346 AAATCTCCACACGAAGTTATCCGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
72226383 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
72226420 TAATCTCCACATGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
72226455 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:72226658 original size:50 final size:50
Alignment explanation
Indices: 72226604--72226700 Score: 151
Period size: 50 Copynumber: 1.9 Consensus size: 50
72226594 CATCGCCTAC
*
72226604 ATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACA-TAGACCATTCGACTTTACCACATATACATATCTCATATAT
* *
72226654 ATATTTCACATTGACCATTCGACTTTACCACATATGCATATCTCATA
1 ATATTTCACATAGACCATTCGACTTTACCACATATACATATCTCATA
72226701 CATACACATT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (50 bp):
ATATTTCACATAGACCATTCGACTTTACCACATATACATATCTCATATAT
Found at i:72230715 original size:40 final size:40
Alignment explanation
Indices: 72230670--72230816 Score: 179
Period size: 40 Copynumber: 3.7 Consensus size: 40
72230660 CGAATACACG
* * *
72230670 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
72230710 ACACCAGCACGAATGCTCTTCAGGG-TTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTC-GGGACTTAGCCCGGATATA
* * *
72230750 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* *
72230790 TCACTAGCACGAATGCTTTTCGGGACT
1 TCACCAGCACGAATGCTCTTCGGGACT
72230817 GTGATAGCCC
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:72232542 original size:27 final size:28
Alignment explanation
Indices: 72232486--72232555 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
72232476 AAACTTGTAC
*
72232486 AGCACTAAGTGTGTGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72232514 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
72232541 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72232556 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:72232566 original size:27 final size:27
Alignment explanation
Indices: 72232510--72232567 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
72232500 GAGTTTGATC
* * *
72232510 ATATAGCACTAAGTGTGCGAGTTGATT
1 ATATAGCACTAAGTGTGCGAGCTCACT
72232537 ATATAGCACTAAGTGTGCG-GACTCACT
1 ATATAGCACTAAGTGTGCGAG-CTCACT
72232564 ATAT
1 ATAT
72232568 GCTTTTGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (27 bp):
ATATAGCACTAAGTGTGCGAGCTCACT
Found at i:72234076 original size:40 final size:40
Alignment explanation
Indices: 72234032--72234375 Score: 582
Period size: 40 Copynumber: 8.6 Consensus size: 40
72234022 GGGTGTTACA
* *
72234032 GGGACTTAGTCCGGATACATCACTAGCACGAATGCT-TCTC
1 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCT-TC
*
72234072 GGGACTTATCCCGGATATATCACTAGCACGAATGCTCTTC
1 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
*
72234112 GGGACTTAGCCCAGATATATCACTAGCACGAATGCTCTTC
1 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
*
72234152 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCCTC
1 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
72234192 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
1 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
* * * *
72234232 GAGACTTATCCCGGATATATCACTAGTACGAATGCTCCTC
1 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
*
72234272 GGGACTTAGCCCGGATATATCACTAGCACAAATGCTCTTC
1 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
72234312 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
1 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
72234352 GGGACTTAGCCCGGATATATCACT
1 GGGACTTAGCCCGGATATATCACT
72234376 CTCAATTCTC
Statistics
Matches: 285, Mismatches: 18, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 284 1.00
41 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
Found at i:72235704 original size:37 final size:37
Alignment explanation
Indices: 72235645--72235790 Score: 247
Period size: 37 Copynumber: 3.9 Consensus size: 37
72235635 AGCTCAGACG
* *
72235645 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
72235682 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
72235719 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
72235756 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
72235791 ATATATTTCC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 104 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:72235994 original size:50 final size:50
Alignment explanation
Indices: 72235940--72236036 Score: 160
Period size: 50 Copynumber: 1.9 Consensus size: 50
72235930 CATCGCCTAC
*
72235940 ATATTTCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTGA-CCATTCGGCTTTACCACATACACATATCTCATATAT
*
72235990 ATATTTCACATTGACCATTCGGCTTTACCACATACGCATATCTCATA
1 ATATTTCACATTGACCATTCGGCTTTACCACATACACATATCTCATA
72236037 CATACACACA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
50 43 0.98
51 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (50 bp):
ATATTTCACATTGACCATTCGGCTTTACCACATACACATATCTCATATAT
Found at i:72239621 original size:43 final size:43
Alignment explanation
Indices: 72239567--72239652 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
72239557 GAGATATGTG
*
72239567 GCATCCGAGCTCGTTGAGTAGTCCGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCATTGAGTAGTCCGAGTTCATTATGGATGCGA
* *
72239610 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTGTGGATGCGA
1 GCATCCGAGCTCATTGAGTAGTCCGAGTTCATTATGGATGCGA
72239653 CACCTGTGAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGTAGTCCGAGTTCATTATGGATGCGA
Found at i:72247423 original size:40 final size:40
Alignment explanation
Indices: 72247368--72247591 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
72247358 TATTCGGATG
72247368 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
72247408 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-CA--AGTTACT
* * *
72247451 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
72247491 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
72247531 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
72247571 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
72247592 ATACTTGGGT
Statistics
Matches: 163, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 13 0.08
40 113 0.69
41 1 0.01
43 36 0.22
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:72247511 original size:83 final size:80
Alignment explanation
Indices: 72247372--72247591 Score: 293
Period size: 83 Copynumber: 2.7 Consensus size: 80
72247362 CGGATGATAT
* **
72247372 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
72247437 TG-TGAGTAGTTGCTATAC
66 TGCT-AGT-G--ACTATAC
*
72247455 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
72247520 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
72247535 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
72247592 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
79 14 0.11
80 42 0.33
81 2 0.02
82 1 0.01
83 66 0.52
84 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:72254972 original size:2 final size:2
Alignment explanation
Indices: 72254965--72254990 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
72254955 AAATGGCATA
72254965 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
72254991 GTGTGTGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72255744 original size:39 final size:40
Alignment explanation
Indices: 72255589--72255811 Score: 292
Period size: 40 Copynumber: 5.5 Consensus size: 40
72255579 TATTCGGATG
* *
72255589 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
72255629 ATATCCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGT-G--ACT
*
72255672 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
72255712 ATATCCGGGCTAAGT-CCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
72255751 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
72255791 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
72255812 ATACTTGGGT
Statistics
Matches: 162, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
39 49 0.30
40 74 0.46
41 2 0.01
42 1 0.01
43 35 0.22
44 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:72268421 original size:29 final size:29
Alignment explanation
Indices: 72268382--72268460 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72268372 CTTAATAATC
*
72268382 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72268412 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72268441 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72268461 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72269598 original size:17 final size:18
Alignment explanation
Indices: 72269561--72269598 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
72269551 CACTTTTTTT
72269561 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
72269580 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
72269597 TT
1 TT
72269599 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:72276214 original size:29 final size:29
Alignment explanation
Indices: 72276175--72276253 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72276165 CTTAATAATC
*
72276175 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72276205 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72276234 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72276254 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72280423 original size:37 final size:37
Alignment explanation
Indices: 72280364--72280469 Score: 167
Period size: 37 Copynumber: 2.9 Consensus size: 37
72280354 AGCTCAGACG
* * *
72280364 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
72280401 AAATCTCCATACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
72280438 TAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
72280470 AGAATATATT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:72280706 original size:47 final size:47
Alignment explanation
Indices: 72280630--72281168 Score: 657
Period size: 47 Copynumber: 11.1 Consensus size: 47
72280620 CATACATATC
* * * * *
72280630 TCACATTAGCCATTTGGCTTTACCACATATATTCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
72280677 TCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
72280724 TCATATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
72280771 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
72280818 TCACATTGGCCATTCGGCCTTATCACGCATATATATATACAGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCA--CATATATGCAT---GTTCACATTCA
* **
72280870 TCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCA
* *
72280921 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACA-TCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
72280967 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
72281014 TCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCA
* **
72281065 TCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTAT--CAC--ATATATGCATGTTCACATTCA
* * *
72281116 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
72281163 TCACAT
1 TCACAT
72281169 AAAATCCTAA
Statistics
Matches: 444, Mismatches: 34, Indels: 28
0.88 0.07 0.06
Matches are distributed among these distances:
46 46 0.10
47 214 0.48
49 16 0.04
51 124 0.28
52 35 0.08
54 9 0.02
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:72281139 original size:195 final size:195
Alignment explanation
Indices: 72280630--72281168 Score: 882
Period size: 195 Copynumber: 2.8 Consensus size: 195
72280620 CATACATATC
* *
72280630 TCACATTAGCCATTTGG-CTT-T-ACCACATATAT-T-CATGTTCACATTCATCACATTGGCCAT
1 TCACATTGGCCATTCGGCCTTATCACCACATATATATACA-GTTCACATTCATCACATTGGCCAT
* * ** *
72280690 TCGGCCTTAT--CTC--ATATATGCATGTTCACATTCATCATATTGGCCATTCGGCCTTATCACA
65 TCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
72280751 CATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATT
130 CATACGCATGTTCACA-TCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATT
72280816 CA
194 CA
*
72280818 TCACATTGGCCATTCGGCCTTATCACGCATATATATATACAGTTCACATTCATCACATTGGCCAT
1 TCACATTGGCCATTCGGCCTTATCAC-CACATATATATACAGTTCACATTCATCACATTGGCCAT
72280883 TCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
65 TCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
72280948 CATACGCATGTTCACATCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTC
130 CATACGCATGTTCACATCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTC
72281013 A
195 A
*
72281014 TCACATTGGCCATTCGGCCTTATCA-CACATATATATACGGGTTCACATTCATCACATTGGCCAT
1 TCACATTGGCCATTCGGCCTTATCACCACATATATATAC-AGTTCACATTCATCACATTGGCCAT
72281078 TCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
65 TCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
72281143 CATACGCATGTTCACATCCATCACAT
130 CATACGCATGTTCACAT-CATCACAT
72281169 AAAATCCTAA
Statistics
Matches: 329, Mismatches: 10, Indels: 16
0.93 0.03 0.05
Matches are distributed among these distances:
188 15 0.05
189 3 0.01
190 1 0.00
191 2 0.01
192 8 0.02
193 35 0.11
194 14 0.04
195 108 0.33
196 83 0.25
197 60 0.18
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (195 bp):
TCACATTGGCCATTCGGCCTTATCACCACATATATATACAGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC
ATACGCATGTTCACATCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
Found at i:72287805 original size:40 final size:40
Alignment explanation
Indices: 72287773--72287951 Score: 295
Period size: 40 Copynumber: 4.5 Consensus size: 40
72287763 TCTTTGGGGT
* * *
72287773 TTAGCACGAATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
72287813 TTAGCCCAGATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* *
72287853 TTAGCCCGGACATATCACTAGTACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
72287893 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
72287933 TTAGCCCGGATATATCACT
1 TTAGCCCGGATATATCACT
72287952 CTCAATTCTC
Statistics
Matches: 128, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 128 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
Found at i:72289276 original size:37 final size:37
Alignment explanation
Indices: 72289217--72289325 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
72289207 AGCTCAGACG
* * *
72289217 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
72289254 AAATCTCCATACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
72289291 TAATCTCCACACATAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
72289326 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:72289546 original size:47 final size:47
Alignment explanation
Indices: 72289486--72289921 Score: 545
Period size: 47 Copynumber: 9.1 Consensus size: 47
72289476 CATACATATC
** * * * * *
72289486 TCACATTAACCATTTGGCTTTACCACGTATATTCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
72289533 TCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
72289580 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
72289627 TCACATTGGCCATTCGGCCTTATCACACATATATAC-GGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTAT--CACATATATGCATGTTCACATTCA
* **
72289675 TCACATTGGCCATTCGGCCTTATCACACATGCGCATGTTCACA-TCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
72289721 TCACATTGGCCATTCGGCCTTATCATACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
72289768 TCACATTGGCCATTCGGCCTTATCACACATATATATACGA-GTTCACATTCA
1 TCACATTGGCCATTCGGCCTTAT--CAC--ATATATGC-ATGTTCACATTCA
** *
72289819 TCACATTGGCCATTCGGCCTTATCACACATATATATACGGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTAT--CACATATATGCA-TGTTCACATTCA
* * *
72289869 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
72289916 TCACAT
1 TCACAT
72289922 AAAATCCTAA
Statistics
Matches: 345, Mismatches: 33, Indels: 22
0.86 0.08 0.05
Matches are distributed among these distances:
46 50 0.14
47 155 0.45
48 43 0.12
49 17 0.05
50 34 0.10
51 45 0.13
52 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:72289757 original size:141 final size:144
Alignment explanation
Indices: 72289522--72289921 Score: 662
Period size: 141 Copynumber: 2.8 Consensus size: 144
72289512 GTATATTCAT
* *
72289522 GTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATT
72289587 GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
66 GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
72289652 CAC-ATATATACG-
131 CACAATATATACGA
**
72289664 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATGCGCATGTTCACA-TCATCACATT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATT
* *
72289728 GGCCATTCGGCCTTATCATACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
66 GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
72289793 CACATATATATACGA
131 CACA-ATATATACGA
**
72289808 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATATACGGTTCACATTCATCAC
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAT---GTTCACATTCATCAC
*
72289873 ATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
63 ATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
72289922 AAAATCCTAA
Statistics
Matches: 238, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
141 76 0.32
142 50 0.21
143 9 0.04
144 43 0.18
147 7 0.03
148 53 0.22
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (144 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATT
GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
CACAATATATACGA
Found at i:72289784 original size:188 final size:190
Alignment explanation
Indices: 72289519--72289921 Score: 677
Period size: 188 Copynumber: 2.1 Consensus size: 190
72289509 CACGTATATT
*
72289519 CATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCAC
1 CATGTTCACA-TCATCACATTGGCCATTCGGCCTTATCTCACATATGCATGTTCACATTCATCAC
*
72289584 ATTGGCCATTCGGCCTTATCACACATACGCAT-GTTCACATTCATCACATTGGCCATTCGGCCTT
65 ATTGGCCATTCGGCCTTATCACACATACACATAGTTCACATTCATCACATTGGCCATTCGGCCTT
*
72289648 ATCACAC-ATATATACGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATGCG
130 ATCACACAATATATACGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
72289708 CATGTTCACATCATCACATTGGCCATTCGGCCTTATCAT-ACATATGCATGTTCACATTCATCAC
1 CATGTTCACATCATCACATTGGCCATTCGGCCTTATC-TCACATATGCATGTTCACATTCATCAC
* *
72289772 ATTGGCCATTCGGCCTTATCACACATATATATACGAGTTCACATTCATCACATTGGCCATTCGGC
65 ATTGGCCATTCGGCCTTATCACACATACACAT---AGTTCACATTCATCACATTGGCCATTCGGC
72289837 CTTATCACACATATATATACGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
127 CTTATCACACA-ATATATACGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
72289902 CATGTTCACATCCATCACAT
1 CATGTTCACAT-CATCACAT
72289922 AAAATCCTAA
Statistics
Matches: 201, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
188 80 0.40
189 11 0.05
192 39 0.19
194 63 0.31
195 8 0.04
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (190 bp):
CATGTTCACATCATCACATTGGCCATTCGGCCTTATCTCACATATGCATGTTCACATTCATCACA
TTGGCCATTCGGCCTTATCACACATACACATAGTTCACATTCATCACATTGGCCATTCGGCCTTA
TCACACAATATATACGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
Found at i:72293654 original size:40 final size:39
Alignment explanation
Indices: 72293609--72293816 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
72293599 CGGAATACAA
*
72293609 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72293649 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
72293689 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
72293729 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
72293769 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
72293809 CCGGATAT
1 CCGGATAT
72293817 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72293749 original size:80 final size:80
Alignment explanation
Indices: 72293609--72293815 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
72293599 CGGAATACAA
* * *
72293609 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
72293673 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
72293689 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
72293753 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
72293769 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
72293816 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:72300042 original size:28 final size:28
Alignment explanation
Indices: 72299982--72300035 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
72299972 GTGGGAAGTA
* * *
72299982 ATTGGGCCTGATGGGCCATATGAATGTG
1 ATTGGACCAGATGGGCCATATGAACGTG
*
72300010 ATTGGACCAGATGGGCCATGTGAACG
1 ATTGGACCAGATGGGCCATATGAACG
72300036 ATATTGGGCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.24, C:0.17, G:0.35, T:0.24
Consensus pattern (28 bp):
ATTGGACCAGATGGGCCATATGAACGTG
Found at i:72300391 original size:27 final size:27
Alignment explanation
Indices: 72300361--72300647 Score: 282
Period size: 27 Copynumber: 10.7 Consensus size: 27
72300351 ATAATAAAGA
72300361 AAAATTACTGAAATACCCTCGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
72300388 AAAATTACCT-AAATACCCTCGATTTGT
1 AAAATTA-CTGAAATACCCTCGATTTGT
*
72300415 AAAATTACCGAAATACCCTCGA-TTGT
1 AAAATTACTGAAATACCCTCGATTTGT
* **
72300441 GAAATTACTGAAATACTTTCGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
* * * *
72300468 AAAATTATTGAAACACCCTCAATTTTT
1 AAAATTACTGAAATACCCTCGATTTGT
*
72300495 AAAATTA-TCGAAACACCCTCGATTTGT
1 AAAATTACT-GAAATACCCTCGATTTGT
*
72300522 AAAATTACCG-AATACCCTCGATTTGT
1 AAAATTACTGAAATACCCTCGATTTGT
* ** *
72300548 AAAATTACCGAAATACCCTTAATTTTT
1 AAAATTACTGAAATACCCTCGATTTGT
* * * **
72300575 AAAATTACCGAAACACCCTTGATTCAT
1 AAAATTACTGAAATACCCTCGATTTGT
* * *
72300602 AAAATTA-TCAAAATACCCTTG-TAGTGT
1 AAAATTACT-GAAATACCCTCGAT-TTGT
72300629 AAAATTA-TCGAAATACCCT
1 AAAATTACT-GAAATACCCT
72300648 TGTAGTGTAA
Statistics
Matches: 222, Mismatches: 30, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
26 50 0.23
27 170 0.77
28 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTCGATTTGT
Found at i:72300498 original size:80 final size:80
Alignment explanation
Indices: 72300361--72300647 Score: 332
Period size: 80 Copynumber: 3.6 Consensus size: 80
72300351 ATAATAAAGA
* *
72300361 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCT-AAATACCCTCGATTTGTAAAATTACCG
1 AAAATTACTGAAATACCCTCGATTTGTAAAATTA-CTGAAATACCCTCAATTTTTAAAATTACCG
*
72300425 AAATACCCTCGATTGT
65 AAACACCCTCGATTGT
* ** * * *
72300441 GAAATTACTGAAATACTTTCGATTTGTAAAATTATTGAAACACCCTCAATTTTTAAAATTATCGA
1 AAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCAATTTTTAAAATTACCGA
72300506 AACACCCTCGATTTGT
66 AACACCCTCGA-TTGT
* * *
72300522 AAAATTACCG-AATACCCTCGATTTGTAAAATTACCGAAATACCCTTAATTTTTAAAATTACCGA
1 AAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCAATTTTTAAAATTACCGA
* *
72300586 AACACCCTTGATTCAT
66 AACACCCTCGATT-GT
* * *
72300602 AAAATTA-TCAAAATACCCTTG-TAGTGTAAAATTA-TCGAAATACCCT
1 AAAATTACT-GAAATACCCTCGAT-TTGTAAAATTACT-GAAATACCCT
72300648 TGTAGTGTAA
Statistics
Matches: 175, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
79 3 0.02
80 131 0.75
81 41 0.23
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
AAAATTACTGAAATACCCTCGATTTGTAAAATTACTGAAATACCCTCAATTTTTAAAATTACCGA
AACACCCTCGATTGT
Found at i:72300553 original size:107 final size:107
Alignment explanation
Indices: 72300361--72300673 Score: 353
Period size: 107 Copynumber: 2.9 Consensus size: 107
72300351 ATAATAAAGA
* * * *
72300361 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCTAAATACCCTCGATTTGTAAAATTACCGA
1 AAAATTACTGAAACACCCTCGATTTATAAAATTATCAAAATACCCTCGATTTGTAAAATTACCGA
* * * *
72300426 AATACCCTCGATTGTGAAATTACTGAAATA-CTTTCGATTTGT
66 AATACCCTCGATTGTAAAATTACCGAAATACCCTT-AATTTGT
* * * * *
72300468 AAAATTATTGAAACACCCTCAATTTTTAAAATTATCGAAACACCCTCGATTTGTAAAATTACCG-
1 AAAATTACTGAAACACCCTCGATTTATAAAATTATCAAAATACCCTCGATTTGTAAAATTACCGA
*
72300532 AATACCCTCGATTTGTAAAATTACCGAAATACCCTTAATTTTT
66 AATACCCTCGA-TTGTAAAATTACCGAAATACCCTTAATTTGT
* * * * * *
72300575 AAAATTACCGAAACACCCTTGATTCATAAAATTATCAAAATACCCTTG-TAGTGTAAAATTATCG
1 AAAATTACTGAAACACCCTCGATTTATAAAATTATCAAAATACCCTCGAT-TTGTAAAATTACCG
* * * *
72300639 AAATACCCTTGTAGTGTAAAATGACCGACATACCC
65 AAATACCCTCG-ATTGTAAAATTACCGAAATACCC
72300674 CTATAGGGTA
Statistics
Matches: 174, Mismatches: 27, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
106 12 0.07
107 130 0.75
108 31 0.18
109 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (107 bp):
AAAATTACTGAAACACCCTCGATTTATAAAATTATCAAAATACCCTCGATTTGTAAAATTACCGA
AATACCCTCGATTGTAAAATTACCGAAATACCCTTAATTTGT
Found at i:72300684 original size:27 final size:27
Alignment explanation
Indices: 72300612--72300690 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
72300602 AAAATTATCA
* * * * *
72300612 AAATACCCTTGTAGTGTAAAATTATCG
1 AAATACCCCTATAGGGTAAAATGACCG
* * *
72300639 AAATACCCTTGTAGTGTAAAATGACCG
1 AAATACCCCTATAGGGTAAAATGACCG
*
72300666 ACATACCCCTATAGGGTAAAATGAC
1 AAATACCCCTATAGGGTAAAATGAC
72300691 TGTTTTGCCC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAAAATGACCG
Found at i:72307231 original size:47 final size:47
Alignment explanation
Indices: 72307159--72307457 Score: 474
Period size: 47 Copynumber: 6.4 Consensus size: 47
72307149 CCCTTCGGGA
* * * * * *
72307159 CTTATCACATTTATACACTTACACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
72307206 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
72307253 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
72307300 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
72307347 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
72307394 CTTATCACATGTATGCACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGGC
72307441 CTTATCACATATATACA
1 CTTATCACATATATACA
72307458 TCTCATACAT
Statistics
Matches: 235, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 234 1.00
48 1 0.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:72310903 original size:15 final size:15
Alignment explanation
Indices: 72310883--72310912 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
72310873 ACTAGCATGA
72310883 ATGCTCTTCGGGACT
1 ATGCTCTTCGGGACT
72310898 ATGCTCTTCGGGACT
1 ATGCTCTTCGGGACT
72310913 TAGTCCGGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.27, T:0.33
Consensus pattern (15 bp):
ATGCTCTTCGGGACT
Found at i:72310928 original size:55 final size:55
Alignment explanation
Indices: 72310844--72310948 Score: 174
Period size: 55 Copynumber: 1.9 Consensus size: 55
72310834 CCAGCATGAT
*
72310844 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTA
1 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTA
* * *
72310899 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAATTCTCTTCGG
1 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGG
72310949 AACTTCCGGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.28
Consensus pattern (55 bp):
TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTA
Found at i:72311008 original size:40 final size:40
Alignment explanation
Indices: 72310898--72311087 Score: 323
Period size: 40 Copynumber: 4.8 Consensus size: 40
72310888 CTTCGGGACT
*
72310898 ATGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGA
1 ATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGA
*
72310938 ATTCTCTTCGGAAC-T--TCCGGATACATCACTAGCACGA
1 ATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGA
72310975 ATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGA
1 ATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGA
72311015 ATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGA
1 ATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGA
* *
72311055 ATTCTCTTCGGAACTTAGTCCGGATATATCACT
1 ATGCTCTTCGGAACTTAGTCCGGATACATCACT
72311088 CTCAATTCTC
Statistics
Matches: 142, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
37 35 0.25
38 1 0.01
39 1 0.01
40 105 0.74
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (40 bp):
ATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGA
Found at i:72312291 original size:71 final size:71
Alignment explanation
Indices: 72312207--72312370 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72312197 CGATTTGTCT
72312207 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72312272 CTTTCA
66 CTTTCA
72312278 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72312343 CTTTCA
66 CTTTCA
72312349 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
72312371 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:72312408 original size:71 final size:70
Alignment explanation
Indices: 72312207--72312404 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
72312197 CGATTTGTCT
* * * *
72312207 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
72312272 CTTTCA
65 CTTTCA
* * * *
72312278 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
72312343 CTTTCA
65 CTTTCA
* *
72312349 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
72312405 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:72316728 original size:29 final size:27
Alignment explanation
Indices: 72316694--72316796 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
72316684 TACTCAATCA
*
72316694 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
72316723 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
72316752 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
72316781 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
72316797 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:72318723 original size:47 final size:47
Alignment explanation
Indices: 72318652--72318853 Score: 296
Period size: 47 Copynumber: 4.3 Consensus size: 47
72318642 CCCTTCGGGA
* * * * *
72318652 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
72318699 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
72318746 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * * *
72318793 TTTATCACATGTATGCACTTTCACATTCAGCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
72318840 CTTATCACATATAT
1 CTTATCACATATAT
72318854 GTAATATCTT
Statistics
Matches: 139, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 139 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:72318730 original size:25 final size:25
Alignment explanation
Indices: 72318702--72318780 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
72318692 ACTCGGCCCT
72318702 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
*** *** *
72318727 ATCACAT-TGGCCA-TTAGGCCTT-
1 ATCACATATATACACTTTCACATTC
72318749 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
72318774 ATCACAT
1 ATCACAT
72318781 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.28, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:72320197 original size:46 final size:46
Alignment explanation
Indices: 72320144--72320319 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72320134 TATTTGGGCA
72320144 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
72320190 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
72320237 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
72320283 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72320320 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:72320299 original size:93 final size:93
Alignment explanation
Indices: 72320140--72320311 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72320130 GGGATATTTG
* *
72320140 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72320205 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
72320233 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72320298 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
72320312 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:72323289 original size:15 final size:15
Alignment explanation
Indices: 72323269--72323337 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
72323259 GTATCTTGGG
72323269 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
72323284 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
72323299 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
72323314 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
72323329 TTTCTTTAT
1 TTTCTTTAT
72323338 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:72323338 original size:30 final size:30
Alignment explanation
Indices: 72323260--72323347 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
72323250 CATAGTATCG
* * * *
72323260 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
72323290 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
72323320 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
72323348 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:72325783 original size:46 final size:46
Alignment explanation
Indices: 72325730--72325905 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72325720 TATTTGGGCA
72325730 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
72325776 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
72325823 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
72325869 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72325906 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:72325885 original size:93 final size:93
Alignment explanation
Indices: 72325726--72325897 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72325716 GGGATATTTG
* *
72325726 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72325791 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
72325819 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72325884 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
72325898 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:72333752 original size:42 final size:43
Alignment explanation
Indices: 72333691--72333790 Score: 112
Period size: 42 Copynumber: 2.3 Consensus size: 43
72333681 GATTTGAGAT
* * * *
72333691 TTACATGCAAGACCATGTCTGGAACATTGACATCG-TATATGA
1 TTACATGTAAGACCTTGTCTGGAACAGTGACATAGATATATGA
* * * * *
72333733 TTTCGTGTAAGACCTTGTCTGGGACAGTGGCATAGATATTTGA
1 TTACATGTAAGACCTTGTCTGGAACAGTGACATAGATATATGA
72333776 TTACATGTAAGACCT
1 TTACATGTAAGACCT
72333791 CATCTGGGAC
Statistics
Matches: 46, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
42 27 0.59
43 19 0.41
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
TTACATGTAAGACCTTGTCTGGAACAGTGACATAGATATATGA
Found at i:72333788 original size:43 final size:44
Alignment explanation
Indices: 72333639--72333808 Score: 111
Period size: 43 Copynumber: 4.0 Consensus size: 44
72333629 TAGGATTCCA
* * * *
72333639 ATATGTGATTTCATGTAAGACCACT-TCTGGGA-TGATGGCATAG
1 ATATTTGATTACATGTAAGACC-TTGTCTGGGACAGATGGCATAG
* * * * * * *
72333682 AT-TTGAGATTTACATGCAAGACCATGTCTGGAACA-TTGACATCG
1 ATATT-TGA-TTACATGTAAGACCTTGTCTGGGACAGATGGCATAG
* * *
72333726 -TATATGATTTCGTGTAAGACCTTGTCTGGGACAG-TGGCATAG
1 ATATTTGATTACATGTAAGACCTTGTCTGGGACAGATGGCATAG
** *
72333768 ATATTTGATTACATGTAAGACCTCATCTGGGAC-GTTGGCAT
1 ATATTTGATTACATGTAAGACCTTGTCTGGGACAGATGGCAT
72333809 TGTATGAGCT
Statistics
Matches: 95, Mismatches: 24, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
42 29 0.31
43 41 0.43
44 25 0.26
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (44 bp):
ATATTTGATTACATGTAAGACCTTGTCTGGGACAGATGGCATAG
Found at i:72335897 original size:26 final size:26
Alignment explanation
Indices: 72335864--72335927 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
72335854 ACAAGCTGAC
*
72335864 GCTCATACAAGTAGCTATAAGGTGCT
1 GCTCATACAAGTAGCTACAAGGTGCT
72335890 GCTCATACAAGTAGCTACAAGGTGCT
1 GCTCATACAAGTAGCTACAAGGTGCT
*
72335916 GCTCACACAAGT
1 GCTCATACAAGT
72335928 TGATAAGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23
Consensus pattern (26 bp):
GCTCATACAAGTAGCTACAAGGTGCT
Found at i:72337665 original size:22 final size:22
Alignment explanation
Indices: 72337640--72337682 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
72337630 GACTATGCGA
72337640 TCTAAGCTCATGAGT-TATGTGG
1 TCTAAGCTCATGA-TATATGTGG
72337662 TCTAAGCTCATGATATATGTG
1 TCTAAGCTCATGATATATGTG
72337683 ACGAATGTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 1 0.05
22 19 0.95
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (22 bp):
TCTAAGCTCATGATATATGTGG
Found at i:72342293 original size:15 final size:15
Alignment explanation
Indices: 72342273--72342302 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
72342263 CATACCAATC
72342273 GTATAATTTCTTAAT
1 GTATAATTTCTTAAT
72342288 GTATAATTTCTTAAT
1 GTATAATTTCTTAAT
72342303 CATTTAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (15 bp):
GTATAATTTCTTAAT
Found at i:72342749 original size:2 final size:2
Alignment explanation
Indices: 72342742--72342771 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
72342732 AATTCATACT
72342742 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72342772 AAATTCAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72347114 original size:16 final size:16
Alignment explanation
Indices: 72347093--72347123 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72347083 AAGAAATTAG
*
72347093 ATTAATTATTTTTATT
1 ATTAATTAGTTTTATT
72347109 ATTAATTAGTTTTAT
1 ATTAATTAGTTTTAT
72347124 GATATTTTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (16 bp):
ATTAATTAGTTTTATT
Found at i:72353160 original size:29 final size:29
Alignment explanation
Indices: 72353121--72353199 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72353111 CTTAATAATC
*
72353121 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72353151 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72353180 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72353200 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72360746 original size:29 final size:29
Alignment explanation
Indices: 72360707--72360785 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72360697 CTTAATAATC
*
72360707 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72360737 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72360766 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72360786 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72363282 original size:100 final size:101
Alignment explanation
Indices: 72363169--72363362 Score: 282
Period size: 100 Copynumber: 1.9 Consensus size: 101
72363159 GAAACCAAAA
* * * *
72363169 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACGCACGTGACCT-AACCATCTGATACACGTA
1 ATCTGGTACACGTAATAGCCTGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATA
* *
72363233 GAAGCCTGCACTTAGTACCACACATGTGACTTAACT
66 GAAGCCTACACATAGTACCACACATGTGACTTAACT
* *
72363269 ATCTGGTACACGTAATAGTCTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACAT
1 ATCTGGTACACGTAATAGCCTGCACTTAGTACTACACACGTGACCT-AAACCATCTGAAACACAT
* *
72363334 AGTAGCCTACACATAGTACTACACATGTG
65 AGAAGCCTACACATAGTACCACACATGTG
72363363 TTCTCACAAT
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 43 0.52
102 39 0.48
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (101 bp):
ATCTGGTACACGTAATAGCCTGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATA
GAAGCCTACACATAGTACCACACATGTGACTTAACT
Found at i:72363351 original size:52 final size:50
Alignment explanation
Indices: 72363132--72363358 Score: 231
Period size: 50 Copynumber: 4.5 Consensus size: 50
72363122 CTGGTACGCA
* * * ** ** *
72363132 TAGTAGCTTCCACTTAGTACTACACATGAAACC-AAAAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
*
72363181 TAGTAGCCTGCACTTAGTACTACGCACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
* * * * * *
72363231 TAGAAGCCTGCACTTAGTACCACACATGTGACTTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
* * * * *
72363281 TAATAGTCTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATCTGATACACG
* *
72363333 TAGTAGCCTACACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
72363359 TGTGTTCTCA
Statistics
Matches: 144, Mismatches: 31, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
49 27 0.19
50 84 0.58
52 33 0.23
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
Found at i:72375565 original size:44 final size:42
Alignment explanation
Indices: 72375424--72375588 Score: 158
Period size: 43 Copynumber: 3.9 Consensus size: 42
72375414 AACATATACA
* * *
72375424 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAACATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATC-AA-ATCG
* *
72375467 ATGCC-ACTGTCCCAAACAGGGTCTTACACG-AAATCAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAAT-CG
* * *
72375509 ATGCCGATGTCCCAGACATGGTCTTACACGTAAAACAGAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA-AA-TCG
* *
72375553 ATGCTAACGTCCCAGACGTGGTCTTACACG-AAATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA
72375589 CATAACTAAA
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
41 2 0.02
42 30 0.30
43 38 0.38
44 30 0.30
45 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATCG
Found at i:72377017 original size:42 final size:42
Alignment explanation
Indices: 72376971--72377088 Score: 119
Period size: 42 Copynumber: 2.8 Consensus size: 42
72376961 TGGCGTTGAT
* *
72376971 ATGAGATTTCGTGTAAGACCACGTCTGGGACATGACGTCAAA
1 ATGAGATTTCATGTAAGACCACGTCTGGGACATGACATCAAA
* * ** * * * *
72377013 ATGAGAATTCATATAAGACCATATTTGGGATATGGCATCAAT
1 ATGAGATTTCATGTAAGACCACGTCTGGGACATGACATCAAA
* **
72377055 GTGAGATCCCATGTAAGACCACGTCTGGGACATG
1 ATGAGATTTCATGTAAGACCACGTCTGGGACATG
72377089 GCATTGGCAT
Statistics
Matches: 57, Mismatches: 19, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (42 bp):
ATGAGATTTCATGTAAGACCACGTCTGGGACATGACATCAAA
Found at i:72385450 original size:46 final size:46
Alignment explanation
Indices: 72385383--72385503 Score: 131
Period size: 46 Copynumber: 2.6 Consensus size: 46
72385373 GTGAGCTAGT
* * *
72385383 GTAAGATATGTCTGGGACATGCATCGGCCACATT-ATGATAGCCAGA
1 GTAAGAAATGTCTGGGACATGCATCGGCC-CATTGACGAGAGCCAGA
* * *
72385429 GTAAGAAATGTCTGGGACATGCATTGG--CATTGAGACGAGAGCTAGT
1 GTAAGAAATGTCTGGGACATGCATCGGCCCATT--GACGAGAGCCAGA
*
72385475 GTAAGACATGTCTGGGACATGCATCGGCC
1 GTAAGAAATGTCTGGGACATGCATCGGCC
72385504 TCGGGATATA
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
43 4 0.06
46 58 0.94
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
GTAAGAAATGTCTGGGACATGCATCGGCCCATTGACGAGAGCCAGA
Found at i:72385621 original size:49 final size:49
Alignment explanation
Indices: 72385563--72385693 Score: 176
Period size: 49 Copynumber: 2.7 Consensus size: 49
72385553 TGTTGTGTGT
* *
72385563 CAGTGTAAGACCTGTCTGGGACATGTCATCGACAC-CGATAAATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGACATCGAC-CTCGATAAATGAAAGC
* *
72385612 CAGTGTAAGACCTGTCTGGGACATGGCATC-AGCCTCGATATATGAAAGC
1 CAGTGTAAGACCTGTCTGGGACATGACATCGA-CCTCGATAAATGAAAGC
* *
72385661 TAGTGTAAGACTTGTCTGGGACATGACATCGAC
1 CAGTGTAAGACCTGTCTGGGACATGACATCGAC
72385694 TTTAATGTAC
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
48 2 0.03
49 70 0.96
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGACATCGACCTCGATAAATGAAAGC
Found at i:72393514 original size:27 final size:27
Alignment explanation
Indices: 72393467--72393518 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
72393457 CATCTGATAT
* *
72393467 TGATTCTGTATTGGGCTTAGGCCCACC
1 TGATTCTGTAATAGGCTTAGGCCCACC
72393494 TGATTCTGTTAATAGGC-TAGGCCCA
1 TGATTCTG-TAATAGGCTTAGGCCCA
72393519 ACTGTTACTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 16 0.73
28 6 0.27
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.33
Consensus pattern (27 bp):
TGATTCTGTAATAGGCTTAGGCCCACC
Found at i:72396206 original size:39 final size:39
Alignment explanation
Indices: 72396143--72396443 Score: 368
Period size: 39 Copynumber: 7.7 Consensus size: 39
72396133 CACCAACACA
* * * * * * *
72396143 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
* * * *
72396183 AAGCCTGCGGACCTTAAGTCCGGATATAGTACCAGTACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
*
72396222 AAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* * *
72396261 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACG
1 AAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCACG
* *
72396301 AAGCCTGCGGACCTTAAGTCTGGATACAATTCCAGCACA
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
** * *
72396340 AAGCCAACGGACCTTAAGTCCAGATACAATTCTAGCACG
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
* *
72396379 AAGCCTGTGGACCTTAAGTCCGGATACAATTCCAGCACA
1 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
*
72396418 AAGCCTACGGACCTTAAGTCCGGATA
1 AAGCCTGCGGACCTTAAGTCCGGATA
72396444 TACATCAACT
Statistics
Matches: 229, Mismatches: 31, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
39 187 0.82
40 42 0.18
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.20
Consensus pattern (39 bp):
AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACG
Found at i:72396356 original size:118 final size:118
Alignment explanation
Indices: 72396143--72396443 Score: 397
Period size: 118 Copynumber: 2.6 Consensus size: 118
72396133 CACCAACACA
* * * * *
72396143 AAGCCTACGGGACTTTAAGCCCGGATATAGTACCAGTACGAAGCCTGCGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* * * * ** * *
72396208 ATAGTACCAGTACGAAGCCTGCGGATCTTAAGTCCGGATACAATTCCAGCACG
66 ACAATACCAGCACAAAGCCAACGGACCTTAAGTCCAGATACAATTCCAGCACG
* *
72396261 AAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCTGGAT
1 AAGCCTGCGGGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
* *
72396326 ACAATTCCAGCACAAAGCCAACGGACCTTAAGTCCAGATACAATTCTAGCACG
66 ACAATACCAGCACAAAGCCAACGGACCTTAAGTCCAGATACAATTCCAGCACG
* * * * *
72396379 AAGCCTG-TGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTACGGACCTTAAGTCCGGAT
1 AAGCCTGCGGGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
72396443 A
66 A
72396444 TACATCAACT
Statistics
Matches: 159, Mismatches: 24, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
117 51 0.32
118 108 0.68
ACGTcount: A:0.30, C:0.28, G:0.23, T:0.20
Consensus pattern (118 bp):
AAGCCTGCGGGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGAT
ACAATACCAGCACAAAGCCAACGGACCTTAAGTCCAGATACAATTCCAGCACG
Found at i:72399345 original size:27 final size:27
Alignment explanation
Indices: 72399315--72399404 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
72399305 CTAAAATAGT
72399315 TAAAATGACCATAATACCCCTGTAGGG
1 TAAAATGACCATAATACCCCTGTAGGG
* * *
72399342 TAAATTGACCTTAATGCCCCTGTAGGG
1 TAAAATGACCATAATACCCCTGTAGGG
* *
72399369 TAAAATGACCGTAATACCCCTGTATGG
1 TAAAATGACCATAATACCCCTGTAGGG
72399396 TAAAATGAC
1 TAAAATGAC
72399405 GATTATGCCC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (27 bp):
TAAAATGACCATAATACCCCTGTAGGG
Found at i:72401610 original size:27 final size:27
Alignment explanation
Indices: 72401554--72401733 Score: 179
Period size: 27 Copynumber: 6.7 Consensus size: 27
72401544 CTTGGTTTAC
* * **
72401554 AAAATTACCAAAATACCTTCGGTTTGT
1 AAAATTACTAAAATACCCTCAATTTGT
* *
72401581 AAAATTACTAAAATACCCTCAACTTAT
1 AAAATTACTAAAATACCCTCAATTTGT
* *
72401608 AAAATTA-TCGAAATACCCTCAACTTGT
1 AAAATTACT-AAAATACCCTCAATTTGT
*
72401635 AAAATTA-TGGAAATACCCTCAATTTGT
1 AAAATTACT-AAAATACCCTCAATTTGT
*
72401662 AAAATTACTAAAATACCC-CTAATTTGG
1 AAAATTACTAAAATACCCTC-AATTTGT
* * *
72401689 AAAATTACCAAAATACCCTTAATTTGG
1 AAAATTACTAAAATACCCTCAATTTGT
72401716 AAAATTAC-AGAAATACCC
1 AAAATTACTA-AAATACCC
72401734 CTGATTTACA
Statistics
Matches: 134, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
26 3 0.02
27 130 0.97
28 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.29
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCAATTTGT
Found at i:72401649 original size:81 final size:81
Alignment explanation
Indices: 72401554--72401733 Score: 211
Period size: 81 Copynumber: 2.2 Consensus size: 81
72401544 CTTGGTTTAC
* ** * *
72401554 AAAATTACCA-AAATACCTTCGGTTTGTAAAATTACTAAAATA-CCCTCAACTTATAAAATTATC
1 AAAATTA-CAGAAATACCCTCAATTTGTAAAATTACTAAAATACCCCT-AACTTAGAAAATTACC
* *
72401617 GAAATACCCTCAACTTGT
64 AAAATACCCTCAACTTGG
** * *
72401635 AAAATTATGGAAATACCCTCAATTTGTAAAATTACTAAAATACCCCTAATTTGGAAAATTACCAA
1 AAAATTACAGAAATACCCTCAATTTGTAAAATTACTAAAATACCCCTAACTTAGAAAATTACCAA
* *
72401700 AATACCCTTAATTTGG
66 AATACCCTCAACTTGG
72401716 AAAATTACAGAAATACCC
1 AAAATTACAGAAATACCC
72401734 CTGATTTACA
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
81 78 0.95
82 4 0.05
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.29
Consensus pattern (81 bp):
AAAATTACAGAAATACCCTCAATTTGTAAAATTACTAAAATACCCCTAACTTAGAAAATTACCAA
AATACCCTCAACTTGG
Found at i:72401734 original size:54 final size:54
Alignment explanation
Indices: 72401576--72401761 Score: 191
Period size: 54 Copynumber: 3.4 Consensus size: 54
72401566 ATACCTTCGG
* * *
72401576 TTTGTAAAATTACTAAAATACCCTCAACTTATAAAATTATC-GAAATA-CCCTCAA
1 TTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTA-CAGAAATACCCCT-AA
* ***
72401630 CTTGTAAAATTATGGAAATACCCTCAATTTGTAAAATTACTA-AAATACCCCTAA
1 TTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTAC-AGAAATACCCCTAA
* * * *
72401684 TTTGGAAAATTACCAAAATACCCTTAATTTGGAAAATTACAGAAATACCCCTGA
1 TTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACAGAAATACCCCTAA
**
72401738 TTTACAAAATTA-CAGAAATACCCT
1 TTTGTAAAATTACCA-AAATACCCT
72401762 TGACTTTCAA
Statistics
Matches: 111, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
53 4 0.04
54 103 0.93
55 4 0.04
ACGTcount: A:0.44, C:0.19, G:0.07, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACAGAAATACCCCTAA
Found at i:72401740 original size:27 final size:26
Alignment explanation
Indices: 72401645--72401760 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 26
72401635 AAAATTATGG
*
72401645 AAATA-CCCTCAATTTGTAAAATTACTA
1 AAATACCCCT-AATTTGGAAAATTAC-A
72401672 AAATACCCCTAATTTGGAAAATTACCA
1 AAATACCCCTAATTTGGAAAATTA-CA
*
72401699 AAATACCCTTAATTTGGAAAATTACA
1 AAATACCCCTAATTTGGAAAATTACA
* **
72401725 GAAATACCCCTGATTTACAAAATTACA
1 -AAATACCCCTAATTTGGAAAATTACA
72401752 GAAATACCC
1 -AAATACCC
72401761 TTGACTTTCA
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
26 2 0.03
27 73 0.91
28 5 0.06
ACGTcount: A:0.45, C:0.21, G:0.07, T:0.28
Consensus pattern (26 bp):
AAATACCCCTAATTTGGAAAATTACA
Found at i:72401747 original size:81 final size:82
Alignment explanation
Indices: 72401581--72401760 Score: 197
Period size: 81 Copynumber: 2.2 Consensus size: 82
72401571 TTCGGTTTGT
* * * * **
72401581 AAAATTACTAAAATA-CCCTCAACTTATAAAATTATCGAAATACCCTCAACTTGTAAAATTATGG
1 AAAATTACTAAAATACCCCTCAACTTAGAAAATTACCAAAATACCCTCAACTTGGAAAATTACAG
**
72401645 AAATACCCTCAATTTGT
66 AAATACCCTCAATTTAC
* * * *
72401662 AAAATTACTAAAATACCCCT-AATTTGGAAAATTACCAAAATACCCTTAATTTGGAAAATTACAG
1 AAAATTACTAAAATACCCCTCAACTTAGAAAATTACCAAAATACCCTCAACTTGGAAAATTACAG
*
72401726 AAATACCC-CTGATTTAC
66 AAATACCCTC-AATTTAC
72401743 AAAATTAC-AGAAATACCC
1 AAAATTACTA-AAATACCC
72401761 TTGACTTTCA
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
80 2 0.02
81 77 0.93
82 4 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.28
Consensus pattern (82 bp):
AAAATTACTAAAATACCCCTCAACTTAGAAAATTACCAAAATACCCTCAACTTGGAAAATTACAG
AAATACCCTCAATTTAC
Found at i:72401762 original size:54 final size:53
Alignment explanation
Indices: 72401635--72401782 Score: 163
Period size: 54 Copynumber: 2.7 Consensus size: 53
72401625 CTCAACTTGT
** * * **
72401635 AAAATTATGGAAATACCCTCAATTTGTAAAATTACTAAAATACCCCTAATTTGG
1 AAAATTACAGAAATACCCTTAATTTGAAAAATTAC-AAAATACCCCTAATTTAC
* *
72401689 AAAATTACCA-AAATACCCTTAATTTGGAAAATTACAGAAATACCCCTGATTTAC
1 AAAATTA-CAGAAATACCCTTAATTTGAAAAATTACA-AAATACCCCTAATTTAC
* *
72401743 AAAATTACAGAAATACCCTTGACTTTCAAAAATTACAAAA
1 AAAATTACAGAAATACCCTT-AATTTGAAAAATTACAAAA
72401783 ATACTATTGG
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
53 3 0.04
54 64 0.80
55 13 0.16
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTTAATTTGAAAAATTACAAAATACCCCTAATTTAC
Found at i:72401772 original size:27 final size:27
Alignment explanation
Indices: 72401529--72401810 Score: 128
Period size: 27 Copynumber: 10.4 Consensus size: 27
72401519 TGTAGGGTAG
* * *
72401529 AATTACTGAAATATCCTTGGTTTACAA
1 AATTACAGAAATACCCTTGATTTACAA
* **
72401556 AATTACCA-AAATA-CCTTCGGTTTGTAA
1 AATTA-CAGAAATACCCTT-GATTTACAA
** * *
72401583 AATTACTA-AAATACCCTCAACTTATAA
1 AATTAC-AGAAATACCCTTGATTTACAA
** * **
72401610 AATTATC-GAAATACCCTCAACTTGTAA
1 AATTA-CAGAAATACCCTTGATTTACAA
** ** **
72401637 AATTATGGAAATACCCTCAATTTGTAA
1 AATTACAGAAATACCCTTGATTTACAA
* * **
72401664 AATTACTA-AAATACCCCTAATTTGGAA
1 AATTAC-AGAAATACCCTTGATTTACAA
* **
72401691 AATTACCA-AAATACCCTTAATTTGGAA
1 AATTA-CAGAAATACCCTTGATTTACAA
*
72401718 AATTACAGAAATACCCCTGATTTACAA
1 AATTACAGAAATACCCTTGATTTACAA
72401745 AATTACAGAAATACCCTTGACTTT-CAAA
1 AATTACAGAAATACCCTTGA-TTTAC-AA
* ** * *
72401773 AATTACAAAAATACTATTGGTTTGCAA
1 AATTACAGAAATACCCTTGATTTACAA
*
72401800 AATTACTGAAA
1 AATTACAGAAA
72401811 CATCATTGGT
Statistics
Matches: 214, Mismatches: 28, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
26 7 0.03
27 179 0.84
28 28 0.13
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACAGAAATACCCTTGATTTACAA
Found at i:72401801 original size:55 final size:54
Alignment explanation
Indices: 72401635--72401810 Score: 156
Period size: 54 Copynumber: 3.2 Consensus size: 54
72401625 CTCAACTTGT
** * ** * * * *
72401635 AAAATTATGGAAATACCCTCAATTTGTAAAATTACTAAAATACCCCTAATTTGG
1 AAAATTACAGAAATACCCTTAATTTCAAAAATTACAAAAATACCACTGATTTGC
** * * *
72401689 AAAATTACCA-AAATACCCTTAATTTGGAAAATTACAGAAATACCCCTGATTTAC
1 AAAATTA-CAGAAATACCCTTAATTTCAAAAATTACAAAAATACCACTGATTTGC
* * * *
72401743 AAAATTACAGAAATACCCTTGACTTTCAAAAATTACAAAAATACTATTGGTTTGC
1 AAAATTACAGAAATACCCTT-AATTTCAAAAATTACAAAAATACCACTGATTTGC
*
72401798 AAAATTACTGAAA
1 AAAATTACAGAAA
72401811 CATCATTGGT
Statistics
Matches: 100, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
53 2 0.02
54 61 0.61
55 37 0.37
ACGTcount: A:0.45, C:0.17, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACAGAAATACCCTTAATTTCAAAAATTACAAAAATACCACTGATTTGC
Found at i:72402159 original size:41 final size:41
Alignment explanation
Indices: 72402082--72402203 Score: 109
Period size: 41 Copynumber: 3.0 Consensus size: 41
72402072 GGGGGAAGAA
* * * * * * **
72402082 ATTAAGGATCGCACGGTTGCTTGACAACTATAGATCCATTG
1 ATTAAGAATCACATGGTTGCTTGACGACTGTGGATCCACCG
*** *
72402123 ATTAAGAATTGTATGGTTGCTTGACGACTGTGGATCCGCCG
1 ATTAAGAATCACATGGTTGCTTGACGACTGTGGATCCACCG
* * *
72402164 ATTAAGGATCACATGGTTGCTTGACGACCGTGAATCCACC
1 ATTAAGAATCACATGGTTGCTTGACGACTGTGGATCCACC
72402204 AGTGGCTTTT
Statistics
Matches: 64, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
41 64 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (41 bp):
ATTAAGAATCACATGGTTGCTTGACGACTGTGGATCCACCG
Found at i:72402398 original size:22 final size:22
Alignment explanation
Indices: 72402346--72402410 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
72402336 GCCAATTATT
* *
72402346 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
72402368 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
72402390 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
72402411 ATGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:72402632 original size:22 final size:22
Alignment explanation
Indices: 72402607--72402653 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
72402597 GTTGCTGTGA
**
72402607 TGTTTACGGCTATGTGTTGTCC
1 TGTTTACGGCTATGTCCTGTCC
*
72402629 TGTTTATGGCTATGTCCTGTCC
1 TGTTTACGGCTATGTCCTGTCC
72402651 TGT
1 TGT
72402654 CTATGGCGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.09, C:0.19, G:0.26, T:0.47
Consensus pattern (22 bp):
TGTTTACGGCTATGTCCTGTCC
Found at i:72402658 original size:22 final size:22
Alignment explanation
Indices: 72402614--72402660 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
72402604 TGATGTTTAC
** *
72402614 GGCTATGTGTTGTCCTGTTTAT
1 GGCTATGTCCTGTCCTGTCTAT
72402636 GGCTATGTCCTGTCCTGTCTAT
1 GGCTATGTCCTGTCCTGTCTAT
72402658 GGC
1 GGC
72402661 GTTGAGTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.43
Consensus pattern (22 bp):
GGCTATGTCCTGTCCTGTCTAT
Found at i:72406455 original size:55 final size:53
Alignment explanation
Indices: 72406325--72406480 Score: 170
Period size: 56 Copynumber: 2.8 Consensus size: 53
72406315 CATGACATAG
* * * *
72406325 CATGCCTCTCAATGGGGCTACATATGAGCACCCGGACCTAGCATGCATCACATTAC
1 CATGCCTCTCAACGGGGCTACATA--AGC-TCCGGACCTAGCATGTACCACATTAC
* * *
72406381 CACGCCTCTCAACAGGGCTACATAAGCTCCGGACCTAGCGTGTACCACATAATTA-
1 CATGCCTCTCAACGGGGCTACATAAGCTCCGGACCTAGCATGTACCAC---ATTAC
*
72406436 CATGCCTCTCAACGGGGCTACACAAGCTCCCGGACCTAGCATGTA
1 CATGCCTCTCAACGGGGCTACATAAGCT-CCGGACCTAGCATGTA
72406481 TCATGTCATC
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
53 17 0.20
54 3 0.04
55 25 0.29
56 40 0.47
ACGTcount: A:0.27, C:0.33, G:0.20, T:0.20
Consensus pattern (53 bp):
CATGCCTCTCAACGGGGCTACATAAGCTCCGGACCTAGCATGTACCACATTAC
Found at i:72415759 original size:71 final size:71
Alignment explanation
Indices: 72415675--72415838 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72415665 CGATTTGTCT
72415675 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72415740 CTTTCA
66 CTTTCA
72415746 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
72415811 CTTTCA
66 CTTTCA
72415817 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
72415839 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:72415876 original size:71 final size:70
Alignment explanation
Indices: 72415675--72415872 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
72415665 CGATTTGTCT
* * * *
72415675 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
72415740 CTTTCA
65 CTTTCA
* * * *
72415746 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
72415811 CTTTCA
65 CTTTCA
* *
72415817 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
72415873 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:72418189 original size:27 final size:27
Alignment explanation
Indices: 72418159--72418239 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
72418149 GGTAAACGAT
*
72418159 CGTAATACCCTTGTAGGGTAAAATGAC
1 CGTAATACCCCTGTAGGGTAAAATGAC
* *
72418186 CGTAATGCCCCTGTAGGCTAAAATGAC
1 CGTAATACCCCTGTAGGGTAAAATGAC
* *
72418213 CATAATACCCCTGTATGGTAAAATGAC
1 CGTAATACCCCTGTAGGGTAAAATGAC
72418240 GATTATGCCC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (27 bp):
CGTAATACCCCTGTAGGGTAAAATGAC
Found at i:72418653 original size:32 final size:34
Alignment explanation
Indices: 72418611--72418675 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 34
72418601 CCCACACCGT
* *
72418611 TACTGTATAGGGCT-AAGGCCAGACTG-TACTGA
1 TACTGAATAGGGCTCAAGCCCAGACTGTTACTGA
72418643 TACTGAATAGGGCTCAAGCCCAGACTGTTACTG
1 TACTGAATAGGGCTCAAGCCCAGACTGTTACTG
72418676 CTTGCACCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 13 0.45
33 11 0.38
34 5 0.17
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.25
Consensus pattern (34 bp):
TACTGAATAGGGCTCAAGCCCAGACTGTTACTGA
Found at i:72423854 original size:29 final size:29
Alignment explanation
Indices: 72423821--72423894 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
72423811 CCTTCGAGCT
72423821 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
72423850 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72423879 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
72423895 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:72423855 original size:58 final size:58
Alignment explanation
Indices: 72423762--72423894 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
72423752 ATACTCGATT
* * * * *
72423762 TCGCACACTTAGTGCCATGCGATTTAAGCCCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
* * * ** * *
72423820 TCGCACACTTAGTGCCAT-ATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGC
1 TCGCACACTTAGTGCCATGAGATTT-AAGCACGCACACACAGTGCCATACACTTCCAGC
*
72423878 ACGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
72423895 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (58 bp):
TCGCACACTTAGTGCCATGAGATTTAAGCACGCACACACAGTGCCATACACTTCCAGC
Found at i:72426813 original size:7 final size:7
Alignment explanation
Indices: 72426792--72426828 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
72426782 ACCCCTTCAT
72426792 TCCCTCA
1 TCCCTCA
* *
72426799 TTCATCA
1 TCCCTCA
72426806 TCCCTCA
1 TCCCTCA
72426813 TCCCTCA
1 TCCCTCA
72426820 TCCCTCA
1 TCCCTCA
72426827 TC
1 TC
72426829 ATTCTCTCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.16, C:0.51, G:0.00, T:0.32
Consensus pattern (7 bp):
TCCCTCA
Found at i:72439764 original size:68 final size:70
Alignment explanation
Indices: 72439692--72439889 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
72439682 ACACCCTGTA
* * * *
72439692 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
72439754 ATAAAT
65 ATAAAT
*
72439760 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
72439825 ATAAAT
65 ATAAAT
*
72439831 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
72439890 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Done.