Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 237 of 425
Found at i:72439803 original size:41 final size:41
Alignment explanation
Indices: 72439758--72439875 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72439748 TGAAAGATAA
72439758 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72439799 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72439829 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72439870 ATGTAG
1 ATGTAG
72439876 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72439815 original size:71 final size:71
Alignment explanation
Indices: 72439726--72439889 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72439716 GAGATGTATC
72439726 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72439791 AGGACA
66 AGGACA
72439797 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72439862 AGGACA
66 AGGACA
72439868 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72439890 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72445720 original size:30 final size:30
Alignment explanation
Indices: 72445686--72445746 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72445676 TCCTTAACTC
72445686 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
72445716 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
72445746 A
1 A
72445747 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:72458185 original size:29 final size:29
Alignment explanation
Indices: 72458143--72458200 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
72458133 ATACCATATA
72458143 TACATAACTCAAAAGCACCAAATAGATGT
1 TACATAACTCAAAAGCACCAAATAGATGT
72458172 TACATAACTCAAAAGCACCAAATAGATGT
1 TACATAACTCAAAAGCACCAAATAGATGT
72458201 CTGATAGTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.21, G:0.10, T:0.21
Consensus pattern (29 bp):
TACATAACTCAAAAGCACCAAATAGATGT
Found at i:72467143 original size:138 final size:140
Alignment explanation
Indices: 72466952--72467232 Score: 548
Period size: 140 Copynumber: 2.0 Consensus size: 140
72466942 CTACTATTTC
72466952 CCTCCATTCACCATTGTTTCTTTCCCTTATCTCTATTTTTGCCGAAGTGCCGC-AAAAGCCGAAA
1 CCTCCATTCACCATTGTTTCTTTCCCTTATCTCTATTTTTGCCGAAGTGCCGCAAAAAGCCGAAA
72467016 TCAGTGAAGATA-GGGGTGCCGATTCTTTGTGACCAGCAACCTTTTTCTTCCTTTTCAATAGTTG
66 TCAGTGAAGATAGGGGGTGCCGATTCTTTGTGACCAGCAACCTTTTTCTTCCTTTTCAATAGTTG
72467080 GCGTTCGGTT
131 GCGTTCGGTT
72467090 CCTCCATTCACCATTGTTTCTTTCCCTTATCTCTATTTTTGCCGAAGTGCCGCAAAAAGCCGAAA
1 CCTCCATTCACCATTGTTTCTTTCCCTTATCTCTATTTTTGCCGAAGTGCCGCAAAAAGCCGAAA
72467155 TCAGTGAAGATAGGGGGTGCCGATTCTTTGTGACCAGCAACCTTTTTCTTCCTTTTCAATAGTTG
66 TCAGTGAAGATAGGGGGTGCCGATTCTTTGTGACCAGCAACCTTTTTCTTCCTTTTCAATAGTTG
72467220 GCGTTCGGTT
131 GCGTTCGGTT
72467230 CCT
1 CCT
72467233 TTACCTTTTA
Statistics
Matches: 141, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
138 53 0.38
139 23 0.16
140 65 0.46
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.36
Consensus pattern (140 bp):
CCTCCATTCACCATTGTTTCTTTCCCTTATCTCTATTTTTGCCGAAGTGCCGCAAAAAGCCGAAA
TCAGTGAAGATAGGGGGTGCCGATTCTTTGTGACCAGCAACCTTTTTCTTCCTTTTCAATAGTTG
GCGTTCGGTT
Found at i:72468116 original size:25 final size:25
Alignment explanation
Indices: 72468087--72468134 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72468077 CCTTATAATG
* * *
72468087 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
72468112 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72468135 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72468215 original size:11 final size:11
Alignment explanation
Indices: 72468182--72468235 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
72468172 TATGGTATGT
72468182 ATGATATGCAC
1 ATGATATGCAC
*
72468193 ATGA-ATG--T
1 ATGATATGCAC
72468201 ATGATATGCAC
1 ATGATATGCAC
*
72468212 ATGATATG--T
1 ATGATATGCAC
72468221 ATGATATGCAC
1 ATGATATGCAC
72468232 ATGA
1 ATGA
72468236 GTAATCATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
8 4 0.12
9 11 0.32
10 3 0.09
11 16 0.47
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:72468222 original size:20 final size:20
Alignment explanation
Indices: 72468177--72468235 Score: 111
Period size: 19 Copynumber: 3.0 Consensus size: 20
72468167 ATAAATATGG
72468177 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
72468197 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
72468216 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
72468236 GTAATCATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.50
20 19 0.50
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:72468339 original size:23 final size:23
Alignment explanation
Indices: 72468285--72468380 Score: 140
Period size: 24 Copynumber: 4.0 Consensus size: 23
72468275 GAGGAAGTGA
72468285 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
72468308 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
72468332 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTA-T
*
72468356 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72468380 A
1 A
72468381 TGATAAAGCA
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
23 22 0.32
24 36 0.53
25 10 0.15
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:72468354 original size:47 final size:48
Alignment explanation
Indices: 72468285--72468380 Score: 151
Period size: 47 Copynumber: 2.0 Consensus size: 48
72468275 GAGGAAGTGA
*
72468285 AAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-CCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGAGGC-TAGGCCTCCAGTTAT
*
72468332 AAAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCCAGTTAT
72468380 A
1 A
72468381 TGATAAAGCA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
47 33 0.73
48 12 0.27
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGAGGCTAGGCCTCCAGTTAT
Found at i:72468630 original size:30 final size:31
Alignment explanation
Indices: 72468570--72468632 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72468560 CGTTTACAGT
72468570 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
72468601 AAAGGCTTCGGCCCAGTGTTATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
72468631 AA
1 AA
72468633 TGAAAAGGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 9 0.30
31 21 0.70
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:72475507 original size:25 final size:25
Alignment explanation
Indices: 72475479--72475526 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72475469 TTATACCATG
* * *
72475479 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
72475504 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72475527 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72475629 original size:20 final size:20
Alignment explanation
Indices: 72475569--72475629 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
72475559 ATAAATATGG
*
72475569 TATGTATGAGATGCACATGA
1 TATGTATGATATGCACATGA
*
72475589 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
72475609 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
72475629 T
1 T
72475630 GTAATCATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:72475705 original size:24 final size:24
Alignment explanation
Indices: 72475678--72475796 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
72475668 GAGGAAGTGA
*
72475678 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
72475702 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
72475725 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
72475749 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
72475773 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72475797 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:72475747 original size:47 final size:48
Alignment explanation
Indices: 72475678--72475796 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
72475668 GAGGAAGTGA
72475678 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
72475725 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
72475773 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72475797 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:72476024 original size:31 final size:31
Alignment explanation
Indices: 72475986--72476049 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72475976 CGTTTACAGT
72475986 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
72476017 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
72476048 AA
1 AA
72476050 CATGAAAGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:72479931 original size:40 final size:40
Alignment explanation
Indices: 72479823--72480032 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72479813 CGGGATTTAA
* * * * *
72479823 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72479863 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72479903 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72479943 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72479983 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72480023 CCGGATATAT
1 CCGGATATAT
72480033 TCCAATGTTC
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72488081 original size:40 final size:40
Alignment explanation
Indices: 72487973--72488102 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
72487963 CGGGATTTAA
* * * *
72487973 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCGACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * *
72488013 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCGACTCGCACGAATGCCTTCGGGTCTTAGC
*
72488053 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCGACTCGCACGAATGCCTTCGGGTCTTAGC
72488093 CCGGATATAT
1 CCGGATATAT
72488103 TTCCAATGTT
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCGACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72490577 original size:28 final size:28
Alignment explanation
Indices: 72490513--72490583 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
72490503 TACTCAATGC
* * *
72490513 CTCGCACACTAAGTGTCATACTCAATAT
1 CTCGCACACTAAGTGCCACAATCAATAT
* * *
72490541 CTTGTACACTAAGTGCCACAATCGATAT
1 CTCGCACACTAAGTGCCACAATCAATAT
*
72490569 CTCGCACACAAAGTG
1 CTCGCACACTAAGTG
72490584 TCGTACATGG
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.25
Consensus pattern (28 bp):
CTCGCACACTAAGTGCCACAATCAATAT
Found at i:72490614 original size:40 final size:40
Alignment explanation
Indices: 72490570--72490706 Score: 166
Period size: 40 Copynumber: 3.4 Consensus size: 40
72490560 AATCGATATC
* * * * * *
72490570 TCGCACACAAAGTGTCGTACATGGCTGAAGCTATCTCAAA
1 TCGCACACAAAGTGCCATATATAGCTGAAGCTATGTCGAA
* *
72490610 TCGCACACTAAGTGCCATATATAGCCGAAGCTATGTCGAA
1 TCGCACACAAAGTGCCATATATAGCTGAAGCTATGTCGAA
* * *
72490650 CCGCACACTAAGTGCCATATATAGCTGAAGCTATGTCGTA
1 TCGCACACAAAGTGCCATATATAGCTGAAGCTATGTCGAA
*
72490690 TCACACACAAAGTGCCA
1 TCGCACACAAAGTGCCA
72490707 AAAATAACTT
Statistics
Matches: 83, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (40 bp):
TCGCACACAAAGTGCCATATATAGCTGAAGCTATGTCGAA
Found at i:72494230 original size:28 final size:28
Alignment explanation
Indices: 72494198--72494262 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
72494188 ATTTACTAGA
*
72494198 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
72494226 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
72494254 ATACCCCTA
1 ATACCCCTA
72494263 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:72494409 original size:28 final size:27
Alignment explanation
Indices: 72494365--72494457 Score: 116
Period size: 28 Copynumber: 3.3 Consensus size: 27
72494355 TGGAGGAAGC
72494365 GTTCTGGTGGCTA-TGCCACAAATTATCT
1 GTTCTGGTGGC-ACTGCCACAAA-TATCT
* *
72494393 GTTCTGGTGGCCCTGCCACATATATCT
1 GTTCTGGTGGCACTGCCACAAATATCT
*
72494420 GTTCTGATGGCACTGCCACAAAATATCT
1 GTTCTGGTGGCACTGCCAC-AAATATCT
72494448 GTATCTGGTG
1 GT-TCTGGTG
72494458 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 22 0.39
28 28 0.50
29 6 0.11
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (27 bp):
GTTCTGGTGGCACTGCCACAAATATCT
Found at i:72494476 original size:55 final size:55
Alignment explanation
Indices: 72494365--72494469 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 55
72494355 TGGAGGAAGC
* * *
72494365 GTTCTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCT
1 GTTCTGATGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCT
* *
72494420 GTTCTGATGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT
1 GTTCTGATGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACAT
72494470 TTTCTGTATC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
54 1 0.02
55 26 0.60
56 16 0.37
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (55 bp):
GTTCTGATGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCT
Found at i:72494945 original size:19 final size:19
Alignment explanation
Indices: 72494921--72494959 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
72494911 TTTTAATTAT
* *
72494921 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
72494940 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
72494959 T
1 T
72494960 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:72497639 original size:27 final size:26
Alignment explanation
Indices: 72497572--72497682 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 26
72497562 GGAAGCGTTA
72497572 TGGTGGCTATGCCACAAATATCTGTTTC
1 TGGTGGCTATGCCAC-AATATCTG-TTC
72497600 TGGTGGCTATGCCACAAATATCTGTTC
1 TGGTGGCTATGCCAC-AATATCTGTTC
* *
72497627 TGGTGGCTCTGCCACAATACCTGTATC
1 TGGTGGCTATGCCACAATATCTGT-TC
* * *
72497654 TGGTGACTCTGTCACAATATCTGTTC
1 TGGTGGCTATGCCACAATATCTGTTC
72497680 TGG
1 TGG
72497683 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
26 13 0.17
27 40 0.52
28 24 0.31
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (26 bp):
TGGTGGCTATGCCACAATATCTGTTC
Found at i:72504325 original size:43 final size:43
Alignment explanation
Indices: 72504233--72504347 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
72504223 TGTGTTCTCG
* * * * *
72504233 TGTAAGACCAAGTCTAAGACGTTGGCA-TCAGATTTGATTTCA
1 TGTAAGACCATGTCTAGGACGTTGGCATTGATATTTGATTACA
*
72504275 TGTAAGACCCTGTCTAGGACAG-TGGCATTGATATTTGATTACA
1 TGTAAGACCATGTCTAGGAC-GTTGGCATTGATATTTGATTACA
*
72504318 TGTAAGACCATGTCTGGGACGTTGGCATTG
1 TGTAAGACCATGTCTAGGACGTTGGCATTG
72504348 TACAAGCTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
42 23 0.37
43 39 0.63
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACGTTGGCATTGATATTTGATTACA
Found at i:72509717 original size:15 final size:15
Alignment explanation
Indices: 72509697--72509729 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
72509687 TTTCTGATAT
72509697 TGTGAGATTGCATGG
1 TGTGAGATTGCATGG
72509712 TGTGAGATTGCATGG
1 TGTGAGATTGCATGG
72509727 TGT
1 TGT
72509730 ACCATTATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.06, G:0.39, T:0.36
Consensus pattern (15 bp):
TGTGAGATTGCATGG
Found at i:72514741 original size:42 final size:43
Alignment explanation
Indices: 72514637--72514743 Score: 112
Period size: 44 Copynumber: 2.5 Consensus size: 43
72514627 TGTGTTCTCG
*
72514637 TGTAAGACCAGGTCTGGGACATTGGCATCGACTTATGATTTACA
1 TGTAAGACC-GGTCTGGGACATTAGCATCGACTTATGATTTACA
* * **
72514681 TGTAAGACCACGTTTGGGATGTTAGCATCGTA-TT-TGATTT-CA
1 TGTAAGACC-GGTCTGGGACATTAGCATCG-ACTTATGATTTACA
72514723 TGTAAGACCGTGTCTGGGACA
1 TGTAAGACCG-GTCTGGGACA
72514744 GTGGAATCGA
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
42 18 0.35
43 6 0.12
44 27 0.52
45 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCGGTCTGGGACATTAGCATCGACTTATGATTTACA
Found at i:72514758 original size:43 final size:42
Alignment explanation
Indices: 72514637--72514793 Score: 122
Period size: 43 Copynumber: 3.6 Consensus size: 42
72514627 TGTGTTCTCG
* *
72514637 TGTAAGACCAGGTCTGGGACATTGGCATCGACT-TATGATTTACA
1 TGTAAGACC-GGTCTGGGACAGTGGCATCGA-TATTTGATTT-CA
* * * *
72514681 TGTAAGACCACGTTTGGGA-TGTTAGCATCG-TATTTGATTTCA
1 TGTAAGACC-GGTCTGGGACAG-TGGCATCGATATTTGATTTCA
* *
72514723 TGTAAGACCGTGTCTGGGACAGTGGAATCGATATTTGATTACA
1 TGTAAGACCG-GTCTGGGACAGTGGCATCGATATTTGATTTCA
* * * *
72514766 TGTAAAACCACGTCTGAGACATTGGCAT
1 TGTAAGACC-GGTCTGGGACAGTGGCAT
72514794 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 25 0.28
43 41 0.46
44 24 0.27
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCGGTCTGGGACAGTGGCATCGATATTTGATTTCA
Found at i:72517643 original size:40 final size:40
Alignment explanation
Indices: 72517584--72517725 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
72517574 AAATTGAATG
* * *
72517584 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
72517624 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
72517664 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
72517704 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
72517726 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:72517726 original size:40 final size:39
Alignment explanation
Indices: 72517623--72517735 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 39
72517613 TGCTGGAAAT
* * **
72517623 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTCAC
*
72517663 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTCAC
*
72517703 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
72517736 ACATGTTATA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.05
40 60 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTCAC
Found at i:72525631 original size:40 final size:40
Alignment explanation
Indices: 72525565--72525715 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
72525555 AAATTGAATG
* * *
72525565 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
72525604 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
72525644 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
72525684 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
72525716 ACATGTTATA
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:72529187 original size:20 final size:20
Alignment explanation
Indices: 72529154--72529206 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
72529144 GGAAGAATAA
72529154 AGAAATGAAAAAAAA-AAAG
1 AGAAATGAAAAAAAACAAAG
*
72529173 AGAATATGAAGAAAAACAAAG
1 AGAA-ATGAAAAAAAACAAAG
72529194 A-AAA-GAAAAAAAA
1 AGAAATGAAAAAAAA
72529207 AGTGTTCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 8 0.27
19 5 0.17
20 12 0.40
21 5 0.17
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (20 bp):
AGAAATGAAAAAAAACAAAG
Found at i:72530014 original size:29 final size:29
Alignment explanation
Indices: 72529981--72530063 Score: 157
Period size: 29 Copynumber: 2.9 Consensus size: 29
72529971 GTGACGAGAT
*
72529981 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
72530010 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
72530039 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
72530064 AAAAAAATAC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 53 1.00
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:72532112 original size:47 final size:45
Alignment explanation
Indices: 72532040--72532317 Score: 195
Period size: 47 Copynumber: 5.8 Consensus size: 45
72532030 GTGATTTGAG
* *
72532040 AGCTAGTGTAGGACATGTCTAGGACATGCATCGGCCTCAACAGAGAT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CT-AACAGAGAT
* * * *
72532087 AGCTAGTGTACGACGTGTCTGGGACATGCATCGGCTAAGAGTTGTGCTAGTGT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAACA-----G--AG-AT
* * *
72532140 AGTGCTAGTGTAAGACATGTCTGGGACATGCATCGTCCTCAACAGAAAA
1 A--GCTAGTGTAAGACATGTCTGGGACATGCATCG-GCT-AACAGAGAT
* * * *
72532189 AGCTAGTGTAAGACGTGTTTGGGACACGCATCGGCT-A-AGAGTT
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAACAGAGAT
* *
72532232 ATGCTAGTGTAAGACATGTCTGGGACATGCATCAGCATGCTTATATGAG--
1 A-GCTAGTGTAAGACATGTCTGGGACATGCATC-G---GCTAACA-GAGAT
72532281 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
72532318 AATGTATCCC
Statistics
Matches: 187, Mismatches: 22, Indels: 45
0.74 0.09 0.18
Matches are distributed among these distances:
43 4 0.02
44 29 0.16
45 4 0.02
46 6 0.03
47 60 0.32
48 15 0.08
49 18 0.10
50 8 0.04
51 3 0.02
52 3 0.02
53 2 0.01
55 30 0.16
56 2 0.01
57 3 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTAACAGAGAT
Found at i:72532220 original size:102 final size:102
Alignment explanation
Indices: 72532041--72532242 Score: 323
Period size: 102 Copynumber: 2.0 Consensus size: 102
72532031 TGATTTGAGA
* * * *
72532041 GCTAGTGTAGGACATGTCTAGGACATGCATCGGCCTCAACAGAGATAGCTAGTGTACGACGTGTC
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAACAGAAAAAGCTAGTGTAAGACGTGTC
* *
72532106 TGGGACATGCATCGGCTAAGAGTTGTGCTAGTGTAGT
66 TGGGACACGCATCGGCTAAGAGTTATGCTAGTGTAGT
* * *
72532143 GCTAGTGTAAGACATGTCTGGGACATGCATCGTCCTCAACAGAAAAAGCTAGTGTAAGACGTGTT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAACAGAAAAAGCTAGTGTAAGACGTGTC
72532208 TGGGACACGCATCGGCTAAGAGTTATGCTAGTGTA
66 TGGGACACGCATCGGCTAAGAGTTATGCTAGTGTA
72532243 AGACATGTCT
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 91 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (102 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCAACAGAAAAAGCTAGTGTAAGACGTGTC
TGGGACACGCATCGGCTAAGAGTTATGCTAGTGTAGT
Found at i:72532256 original size:44 final size:47
Alignment explanation
Indices: 72532142--72532264 Score: 153
Period size: 44 Copynumber: 2.7 Consensus size: 47
72532132 GCTAGTGTAG
72532142 TGCTAGTGTAAGACATGTCTGGGACATGCATCGTCCTCAACAGAAAA
1 TGCTAGTGTAAGACATGTCTGGGACATGCATCGTCCTCAACAGAAAA
* * * * * * **
72532189 AGCTAGTGTAAGACGTGTTTGGGACACGCATCG-GCT-AAGAG-TTA
1 TGCTAGTGTAAGACATGTCTGGGACATGCATCGTCCTCAACAGAAAA
72532233 TGCTAGTGTAAGACATGTCTGGGACATGCATC
1 TGCTAGTGTAAGACATGTCTGGGACATGCATC
72532265 AGCATGCTTA
Statistics
Matches: 64, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
44 29 0.45
45 4 0.06
46 2 0.03
47 29 0.45
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
TGCTAGTGTAAGACATGTCTGGGACATGCATCGTCCTCAACAGAAAA
Found at i:72538159 original size:27 final size:26
Alignment explanation
Indices: 72538087--72538200 Score: 147
Period size: 27 Copynumber: 4.2 Consensus size: 26
72538077 GGAGGAAGCA
72538087 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTATGCCAC-AATATCTG
72538114 TTTCTGGTGGCTATGCCACAAATATCTG
1 -TTCTGGTGGCTATGCCAC-AATATCTG
* *
72538142 TTCTGGTGGCTCTCCCACAATATCTG
1 TTCTGGTGGCTATGCCACAATATCTG
* * *
72538168 TATCTGGTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTATGCCACAATATCTG
72538195 TTCTGG
1 TTCTGG
72538201 CAGCCATGCT
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
26 14 0.17
27 39 0.49
28 27 0.34
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTATGCCACAATATCTG
Found at i:72538221 original size:53 final size:56
Alignment explanation
Indices: 72538098--72538221 Score: 141
Period size: 54 Copynumber: 2.3 Consensus size: 56
72538088 TCTGGTGGCT
* * **
72538098 ATGCCACAAATATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTGGTGGCTC
1 ATGCCACAAATATCTGTATCTGGTGACTATGCCACAAATATCTGTTCTGGCAGCTC
* * *
72538154 -TCCCAC-AATATCTGTATCTGGTGACTCTGTCAC-AATATCTGTTCTGGCAGC-C
1 ATGCCACAAATATCTGTATCTGGTGACTATGCCACAAATATCTGTTCTGGCAGCTC
*
72538206 ATGCTACAAAT-TCTGT
1 ATGCCACAAATATCTGT
72538222 GGTGTGTAGC
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
52 1 0.02
53 25 0.44
54 26 0.46
55 5 0.09
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (56 bp):
ATGCCACAAATATCTGTATCTGGTGACTATGCCACAAATATCTGTTCTGGCAGCTC
Found at i:72539444 original size:47 final size:47
Alignment explanation
Indices: 72539387--72539517 Score: 149
Period size: 47 Copynumber: 2.8 Consensus size: 47
72539377 TCACATCGAT
* * *
72539387 AAATACCTATACAATGGCCCGTAGCCAAATCAAGGTAACTTATGC-CG
1 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCAT-CTCA
* * * * *
72539434 AAGTACCTATACCATGGCCCAG-AGCCATATCCAGGTAGCTCCTCTCA
1 AAATACCTATACCATGGCCC-GTAGCCAAATCAAGGTAACTCATCTCA
*
72539481 AAATACCTATACCATGGCCCGTAGCCAAACCAAGGTA
1 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
72539518 TTATTCGCAC
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 2 0.03
47 66 0.96
48 1 0.01
ACGTcount: A:0.34, C:0.30, G:0.17, T:0.20
Consensus pattern (47 bp):
AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCA
Found at i:72542262 original size:40 final size:40
Alignment explanation
Indices: 72542217--72542346 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
72542207 CGGAATACAA
72542217 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
72542257 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
72542297 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
72542337 CCGGATATAA
1 CCGGATATAA
72542347 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:72550193 original size:40 final size:40
Alignment explanation
Indices: 72550148--72550277 Score: 183
Period size: 40 Copynumber: 3.2 Consensus size: 40
72550138 CGGAATACAA
72550148 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
72550188 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* *
72550228 CCGGATATAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
72550268 CCGGATATAA
1 CCGGATATAA
72550278 TTTCCAGCAT
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.04
40 77 0.96
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:72555826 original size:23 final size:23
Alignment explanation
Indices: 72555791--72555835 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
72555781 AAAAGTAATT
*
72555791 AAATAAATATATTACAATTGTAC
1 AAATAAATATATTACAAATGTAC
72555814 AAATATAAT-TATTACAAATGTA
1 AAATA-AATATATTACAAATGTA
72555836 TATTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (23 bp):
AAATAAATATATTACAAATGTAC
Found at i:72555909 original size:20 final size:19
Alignment explanation
Indices: 72555880--72555949 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 19
72555870 TATATTTCAT
*
72555880 AATAATATAATATCAATTA
1 AATAATATAATAACAATTA
72555899 AATAATAATAATAACAA-TA
1 AATAAT-ATAATAACAATTA
* *
72555918 ATATAA-ACAATAATAATT-
1 A-ATAATATAATAACAATTA
72555936 AATAATTATAATAA
1 AATAA-TATAATAA
72555950 TAAATATATA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
17 4 0.10
18 9 0.21
19 16 0.38
20 13 0.31
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (19 bp):
AATAATATAATAACAATTA
Found at i:72555949 original size:31 final size:34
Alignment explanation
Indices: 72555878--72555970 Score: 99
Period size: 31 Copynumber: 2.9 Consensus size: 34
72555868 AATATATTTC
72555878 ATAATAATATAATATCAATTAAATAATAATAATA
1 ATAATAATATAATATCAATTAAATAATAATAATA
* *
72555912 ACAATAATATAA-A-CAA-T-AATAATTAATAATT
1 ATAATAATATAATATCAATTAAATAA-TAATAATA
*
72555943 ATAATAATA-AATAT-ATATTTAATAATAA
1 ATAATAATATAATATCA-ATTAAATAATAA
72555971 ATATATGTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 13
0.76 0.05 0.20
Matches are distributed among these distances:
30 7 0.14
31 18 0.36
32 4 0.08
33 5 0.10
34 16 0.32
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (34 bp):
ATAATAATATAATATCAATTAAATAATAATAATA
Found at i:72555967 original size:18 final size:20
Alignment explanation
Indices: 72555926--72555976 Score: 72
Period size: 18 Copynumber: 2.7 Consensus size: 20
72555916 TAATATAAAC
*
72555926 AATAATAATTA-ATAATTAT
1 AATAATAAATATATAATTAT
72555945 AATAATAAATATAT-ATT-T
1 AATAATAAATATATAATTAT
72555963 AATAATAAATATAT
1 AATAATAAATATAT
72555977 GTATTACAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 15 0.50
19 13 0.43
20 2 0.07
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AATAATAAATATATAATTAT
Found at i:72555970 original size:3 final size:3
Alignment explanation
Indices: 72555878--72555952 Score: 59
Period size: 3 Copynumber: 25.3 Consensus size: 3
72555868 AATATATTTC
* *
72555878 ATA ATA AT- ATA AT- ATCA ATT A-A ATA ATA ATA ATA ACA ATA AT-
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
72555920 ATAA ACA ATA ATA ATTA ATA ATT ATA ATA ATA A
1 AT-A ATA ATA ATA A-TA ATA ATA ATA ATA ATA A
72555953 ATATATATTT
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
2 7 0.12
3 44 0.77
4 6 0.11
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:72557659 original size:68 final size:67
Alignment explanation
Indices: 72557587--72557736 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
72557577 CATCATGTGT
* * * *
72557587 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
72557649 ATGTAG
62 ATGTAG
** * *
72557655 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
72557720 AG
66 AG
72557722 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
72557737 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:72557692 original size:64 final size:64
Alignment explanation
Indices: 72557611--72557782 Score: 186
Period size: 67 Copynumber: 2.7 Consensus size: 64
72557601 AGACATTATG
* *
72557611 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
72557675 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
72557740 AA
63 AA
* * * *
72557742 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGT
72557783 GTGCAAGAGA
Statistics
Matches: 87, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
63 9 0.10
64 21 0.24
65 8 0.09
66 16 0.18
67 31 0.36
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:72562551 original size:16 final size:15
Alignment explanation
Indices: 72562530--72562563 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
72562520 AGCTATCACA
72562530 TGAATTAAATTAATAT
1 TGAATTAAATTAAT-T
*
72562546 TGAATTAATTTAATT
1 TGAATTAAATTAATT
72562561 TGA
1 TGA
72562564 CAATTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (15 bp):
TGAATTAAATTAATT
Found at i:72568374 original size:6 final size:6
Alignment explanation
Indices: 72568363--72568392 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
72568353 CATTGCCTTG
72568363 GGCTTC GGCTTC GGCTTC GGCTTC GGCTTC
1 GGCTTC GGCTTC GGCTTC GGCTTC GGCTTC
72568393 ACAGCATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.33, T:0.33
Consensus pattern (6 bp):
GGCTTC
Found at i:72573237 original size:19 final size:19
Alignment explanation
Indices: 72573204--72573242 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
72573194 CTTATAAATA
*
72573204 AATATTGATGTTTAAGTAT
1 AATATTGATGTTTAACTAT
72573223 AATATTTGATG-TTAACTAT
1 AATA-TTGATGTTTAACTAT
72573242 A
1 A
72573243 GTTAAGTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.46
Consensus pattern (19 bp):
AATATTGATGTTTAACTAT
Found at i:72575943 original size:17 final size:17
Alignment explanation
Indices: 72575921--72575965 Score: 90
Period size: 17 Copynumber: 2.6 Consensus size: 17
72575911 GCTTACTTTA
72575921 GTAAAAGGTACGAAATC
1 GTAAAAGGTACGAAATC
72575938 GTAAAAGGTACGAAATC
1 GTAAAAGGTACGAAATC
72575955 GTAAAAGGTAC
1 GTAAAAGGTAC
72575966 AAAAGTAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.47, C:0.11, G:0.24, T:0.18
Consensus pattern (17 bp):
GTAAAAGGTACGAAATC
Found at i:72583383 original size:27 final size:28
Alignment explanation
Indices: 72583327--72583396 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
72583317 AAACTTGTAC
72583327 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
72583355 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
72583382 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72583397 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:72583407 original size:27 final size:27
Alignment explanation
Indices: 72583327--72583408 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
72583317 AAACTTGTAC
* *
72583327 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
72583355 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
72583382 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
72583409 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:72589560 original size:32 final size:32
Alignment explanation
Indices: 72589514--72589579 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
72589504 CATCTGGGAA
* *
72589514 AAGCGAATGTAGTTGTTGACGCCTTGAGCAGG
1 AAGCAAATGTAGTTGCTGACGCCTTGAGCAGG
72589546 AAGCAAATGTAGTTGCTGACGCCTTGAGCAGG
1 AAGCAAATGTAGTTGCTGACGCCTTGAGCAGG
72589578 AA
1 AA
72589580 ATCTCTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.23
Consensus pattern (32 bp):
AAGCAAATGTAGTTGCTGACGCCTTGAGCAGG
Found at i:72594024 original size:129 final size:129
Alignment explanation
Indices: 72593794--72594048 Score: 483
Period size: 129 Copynumber: 2.0 Consensus size: 129
72593784 ACCTTGTACC
*
72593794 CTGTTTCAGCGACGGATATGGGTAAGGGGTGTTACAGGATGAGTTTCGGTATTTGTTGTGGATAC
1 CTGTTTCAGCGACGGATATGGGTAAGGGGTGTTACAAGATGAGTTTCGGTATTTGTTGTGGATAC
*
72593859 TCGTCAGCTTGTATGAGCAGCATCGTGTAGCTACATTCCGACCATCAGCTTGTATGAGCAGCAT
66 TCGTCAGCTTGTAGGAGCAGCATCGTGTAGCTACATTCCGACCATCAGCTTGTATGAGCAGCAT
72593923 CTGTTTCAGCGACGGATATGGGTAAGGGGTGTTACAAGATGAGTTTCGGTATTTGTTGTGGATAC
1 CTGTTTCAGCGACGGATATGGGTAAGGGGTGTTACAAGATGAGTTTCGGTATTTGTTGTGGATAC
*
72593988 TCGTCAGCTTGTAGGAGCAGCATCGTGTAGCTACATTCCGACCATCAGCTTGTGTGAGCAG
66 TCGTCAGCTTGTAGGAGCAGCATCGTGTAGCTACATTCCGACCATCAGCTTGTATGAGCAG
72594049 ACCTATTTAT
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
129 123 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (129 bp):
CTGTTTCAGCGACGGATATGGGTAAGGGGTGTTACAAGATGAGTTTCGGTATTTGTTGTGGATAC
TCGTCAGCTTGTAGGAGCAGCATCGTGTAGCTACATTCCGACCATCAGCTTGTATGAGCAGCAT
Found at i:72596369 original size:29 final size:29
Alignment explanation
Indices: 72596345--72596534 Score: 193
Period size: 29 Copynumber: 6.5 Consensus size: 29
72596335 TTCGACTATT
72596345 GATTATGAAAAGGGATGGTGACGACCATC
1 GATTATGAAAAGGGATGGTGACGACCATC
* * *
72596374 AACTATGAAAAGGGATGGTGACAACCATC
1 GATTATGAAAAGGGATGGTGACGACCATC
* * * * **
72596403 AAATATGAAAAGGGATAGCT-TCGAATATC
1 GATTATGAAAAGGGAT-GGTGACGACCATC
** *
72596432 GATTATGAAAAGGGATGGTGAAAACTATC
1 GATTATGAAAAGGGATGGTGACGACCATC
* *
72596461 AACTATGAAAAGGGATGGTGACGACCATC
1 GATTATGAAAAGGGATGGTGACGACCATC
* **
72596490 GATTAATGAAAAGGGATCGTTTCGACCATC
1 GATT-ATGAAAAGGGATGGTGACGACCATC
*
72596520 GAATATGAAAAGGGA
1 GATTATGAAAAGGGA
72596535 CGGCTCTGAT
Statistics
Matches: 131, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
28 2 0.02
29 102 0.78
30 27 0.21
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.21
Consensus pattern (29 bp):
GATTATGAAAAGGGATGGTGACGACCATC
Found at i:72596410 original size:58 final size:58
Alignment explanation
Indices: 72596348--72596534 Score: 223
Period size: 58 Copynumber: 3.2 Consensus size: 58
72596338 GACTATTGAT
* *
72596348 TATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTGACAACCATCAAA
1 TATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTGACAACCATCAAA
* * ** * * *
72596406 TATGAAAAGGGATAGCT-TCGAATATCGATTATGAAAAGGGATGGTGAAAACTATCAAC
1 TATGAAAAGGGAT-GGTGACGACCATCGATTATGAAAAGGGATGGTGACAACCATCAAA
* ** * *
72596464 TATGAAAAGGGATGGTGACGACCATCGATTAATGAAAAGGGATCGTTTCGACCATCGAA
1 TATGAAAAGGGATGGTGACGACCATCGATT-ATGAAAAGGGATGGTGACAACCATCAAA
72596523 TATGAAAAGGGA
1 TATGAAAAGGGA
72596535 CGGCTCTGAT
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
57 2 0.02
58 69 0.66
59 34 0.32
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.21
Consensus pattern (58 bp):
TATGAAAAGGGATGGTGACGACCATCGATTATGAAAAGGGATGGTGACAACCATCAAA
Found at i:72596463 original size:87 final size:87
Alignment explanation
Indices: 72596317--72596534 Score: 310
Period size: 87 Copynumber: 2.5 Consensus size: 87
72596307 ACGATCATAG
* * **
72596317 AATATGAGAAGGGATAGCTTCGACTATTGATTATGAAAAGGGATGGTGACGACCATCAACTATGA
1 AATATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGAAAACCATCAACTATGA
72596382 AAAGGGATGGTGACAACCATCA
66 AAAGGGATGGTGACAACCATCA
* *
72596404 AATATGAAAAGGGATAGCTTCGAATATCGATTATGAAAAGGGATGGTGAAAACTATCAACTATGA
1 AATATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGAAAACCATCAACTATGA
* *
72596469 AAAGGGATGGTGACGACCATCG
66 AAAGGGATGGTGACAACCATCA
* * * * *
72596491 ATTAATGAAAAGGGATCGTTTCGACCATCGAATATGAAAAGGGA
1 AAT-ATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGA
72596535 CGGCTCTGAT
Statistics
Matches: 116, Mismatches: 14, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
87 81 0.70
88 35 0.30
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.22
Consensus pattern (87 bp):
AATATGAAAAGGGATAGCTTCGACTATCGATTATGAAAAGGGATGGTGAAAACCATCAACTATGA
AAAGGGATGGTGACAACCATCA
Found at i:72602957 original size:46 final size:46
Alignment explanation
Indices: 72602890--72603059 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
72602880 TGTAACCCGC
*
72602890 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
* *
72602936 CCATAAGTGAACTCGGACTCAACTCAATGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGC-A--T
* *** * * *
72602982 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
72603029 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
72603060 TTGGGATGCC
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 60 0.60
47 28 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
Found at i:72603006 original size:93 final size:93
Alignment explanation
Indices: 72602898--72603069 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
72602888 GCCCATAAGT
* * *
72602898 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
72602963 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
72602991 GAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
72603056 CGAGTTGGGATGCC
66 CGAGCTCGGATGCC
72603070 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:72606839 original size:46 final size:46
Alignment explanation
Indices: 72606789--72606961 Score: 178
Period size: 46 Copynumber: 3.7 Consensus size: 46
72606779 TGGTTGAGCA
*
72606789 TCCGAACTCGTTGAGATGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72606835 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAAATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
*
72606880 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
72606928 -CCCAAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
72606962 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
42 6 0.06
43 4 0.04
45 6 0.06
46 52 0.50
47 26 0.25
48 2 0.02
50 3 0.03
51 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72606945 original size:93 final size:93
Alignment explanation
Indices: 72606786--72606955 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
72606776 GGATGGTTGA
* *
72606786 GCATCCGAACTCGTTGAGATGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGATGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
72606851 TGAGTCCGAGTTTGTGAAATGTAACTAG
66 TGAGTCCGAGTTTGTGAAATGTAACTAG
* *
72606879 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTTGTTGAG
1 GCATCCGAACTCGTTGAGATGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGAG
72606943 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
72606956 CACTTAGGGG
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 4 0.06
93 68 0.94
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGATGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTTGTGAAATGTAACTAG
Found at i:72608958 original size:18 final size:20
Alignment explanation
Indices: 72608922--72608968 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
72608912 AGTTGTAAGT
72608922 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
72608942 ATATA-ATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
72608961 ATGATATA
1 AT-ATATA
72608969 ACATGTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 14 0.61
20 8 0.35
21 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:72610894 original size:29 final size:29
Alignment explanation
Indices: 72610855--72610933 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72610845 CTTAATAATC
*
72610855 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72610885 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72610914 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72610934 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72612071 original size:17 final size:18
Alignment explanation
Indices: 72612034--72612071 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
72612024 CACTTTTTTT
72612034 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
72612053 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
72612070 TT
1 TT
72612072 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:72618690 original size:29 final size:29
Alignment explanation
Indices: 72618651--72618729 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
72618641 CTTAATAATC
*
72618651 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
72618681 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
72618710 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
72618730 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:72619867 original size:17 final size:18
Alignment explanation
Indices: 72619830--72619867 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
72619820 CACTTTTTTT
72619830 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
72619849 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
72619866 TT
1 TT
72619868 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:72620561 original size:16 final size:16
Alignment explanation
Indices: 72620540--72620571 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
72620530 AGAATGGAGT
72620540 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
72620556 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
72620572 TAAAACAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:72621231 original size:179 final size:179
Alignment explanation
Indices: 72620905--72621232 Score: 451
Period size: 179 Copynumber: 1.8 Consensus size: 179
72620895 CTGTAACATA
* * * *
72620905 AGATAAATAATTTTTAGTGAGAGAGGTTGGAACTGTCAAAAAGTGAAATAGGGGTCTATTTATTG
1 AGATAAATAATTTTTAGTGAGAGAGGTCGGAACTATCAAAAAGTGAAATAGGGGTATATTTAATG
* * * * * *
72620970 AATAAAATGTACTTATTTGCTAAACTAAAAATTCTGAAAATTTTATGGTAGGAATATATGTGAGT
66 AATAAAATATACTTATTTGCTAAACTAAAAATTATAAAAATTTTATGGTAAGAAGATATATGAGT
* *
72621035 CTAGTTTCTGGAAAAATTAGCAGTTCTCAATTTGGATTCTCGTACCATG
131 CTAGTTTCAGAAAAAATTAGCAGTTCTCAATTTGGATTCTCGTACCATG
* * * *
72621084 AGATTAATAATTTTTAGTGAAGAGAGGTCGGAACTATCAGACAGTGAAATAGGGGTATCTTTAAT
1 AGATAAATAATTTTTAGTG-AGAGAGGTCGGAACTATCAAAAAGTGAAATAGGGGTATATTTAAT
* * * *
72621149 GAATAAACTATACTTATTTTCTAGA-TCAAAATTATAAAAATTTTATGGTAAGAAGATATATGAG
65 GAATAAAATATACTTATTTGCTAAACTAAAAATTATAAAAATTTTATGGTAAGAAGATATATGAG
*
72621213 TTTAGTTTCAGAAAAAATTA
130 TCTAGTTTCAGAAAAAATTA
72621233 ACGGATCTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
179 68 0.54
180 59 0.46
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (179 bp):
AGATAAATAATTTTTAGTGAGAGAGGTCGGAACTATCAAAAAGTGAAATAGGGGTATATTTAATG
AATAAAATATACTTATTTGCTAAACTAAAAATTATAAAAATTTTATGGTAAGAAGATATATGAGT
CTAGTTTCAGAAAAAATTAGCAGTTCTCAATTTGGATTCTCGTACCATG
Found at i:72628563 original size:20 final size:20
Alignment explanation
Indices: 72628538--72628575 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72628528 GTTTATTCGC
*
72628538 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
72628558 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
72628576 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:72630231 original size:28 final size:28
Alignment explanation
Indices: 72630198--72630266 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
72630188 GCGTAGATCA
72630198 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
72630226 TGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
72630254 CGATA-TACCCCTA
1 CGAAATTACCCCTA
72630267 GGGTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 8 0.21
28 30 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:72637063 original size:78 final size:78
Alignment explanation
Indices: 72636934--72637091 Score: 316
Period size: 78 Copynumber: 2.0 Consensus size: 78
72636924 TCGATCATCT
72636934 ATCACCCTACGAACTGGAGGATTAGCATATTGACCATTCGGAATATCATTGAGGCTAGGATCATT
1 ATCACCCTACGAACTGGAGGATTAGCATATTGACCATTCGGAATATCATTGAGGCTAGGATCATT
72636999 CCCGTTCCTAGCC
66 CCCGTTCCTAGCC
72637012 ATCACCCTACGAACTGGAGGATTAGCATATTGACCATTCGGAATATCATTGAGGCTAGGATCATT
1 ATCACCCTACGAACTGGAGGATTAGCATATTGACCATTCGGAATATCATTGAGGCTAGGATCATT
72637077 CCCGTTCCTAGCC
66 CCCGTTCCTAGCC
72637090 AT
1 AT
72637092 TTTTCACAGT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (78 bp):
ATCACCCTACGAACTGGAGGATTAGCATATTGACCATTCGGAATATCATTGAGGCTAGGATCATT
CCCGTTCCTAGCC
Found at i:72641065 original size:40 final size:40
Alignment explanation
Indices: 72640958--72641204 Score: 298
Period size: 40 Copynumber: 6.3 Consensus size: 40
72640948 GCTACTCGTT
* * * *
72640958 CAAATACCTTCGGA-CATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATT-TAGTAACTCGCA
*
72640997 CAAA-GCCTTCGGGA-CTTA-ACCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
72641035 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
* *
72641075 CAAATGCCTTC-GATCTTAGT-C-GATTTAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
*
72641113 CAAA-GCCTTCGGATCTTAGTCCGGATTTAGCAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
* *
72641152 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
72641193 CAAA-GCCTTCGG
1 CAAATGCCTTCGG
72641205 GACTTGACAT
Statistics
Matches: 184, Mismatches: 13, Indels: 21
0.84 0.06 0.10
Matches are distributed among these distances:
37 16 0.09
38 45 0.24
39 40 0.22
40 75 0.41
41 8 0.04
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:72641100 original size:77 final size:79
Alignment explanation
Indices: 72640964--72641204 Score: 325
Period size: 77 Copynumber: 3.1 Consensus size: 79
72640954 CGTTCAAATA
* * * **
72640964 CCTTCGGA-CATAGCCCGG-TTATAGTAGCTCGCACAAA-GCCTTCGGGA-CTTAACCGGATTTA
1 CCTTCGGATCTTAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCGGATTTA
* *
72641025 GTAAC-TCGCACAAATG
64 GTCACTTAGCACAAA-G
72641041 CCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTC-GATCTTAGTC-GATTTAGT
1 CCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATTTAGT
72641104 CACTTAGCACAAAG
66 CACTTAGCACAAAG
*
72641118 CCTTCGGATCTTAGTCCGGATTTAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAG
1 CCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGT-CGGATTTAG
72641183 TCACTTAGCACAAAG
65 TCACTTAGCACAAAG
72641198 CCTTCGG
1 CCTTCGG
72641205 GACTTGACAT
Statistics
Matches: 148, Mismatches: 8, Indels: 13
0.88 0.05 0.08
Matches are distributed among these distances:
77 65 0.44
78 45 0.30
79 9 0.06
80 29 0.20
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (79 bp):
CCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATTTAGT
CACTTAGCACAAAG
Found at i:72641137 original size:117 final size:116
Alignment explanation
Indices: 72640994--72641203 Score: 343
Period size: 117 Copynumber: 1.8 Consensus size: 116
72640984 ATAGTAGCTC
*
72640994 GCACAAAGCCTTCGGGACTTAACCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 GCACAAAGCCTTCGGGACTTAACCGGATTTAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCG
*
72641059 GATTTAGTAAC-TCGCACAAATGCCTTCGATCTTAGTCGATTTAGTCACTTA
66 GATTTAGTAACTTAGCACAAA-GCCTTCGATCTTAGTCGATTTAGTCACTTA
*
72641110 GCACAAAGCCTTC-GGATCTTAGTCCGGATTTAGCAACTCGCACAAATGCCTTCGGATCTTAGTC
1 GCACAAAGCCTTCGGGA-CTTA-ACCGGATTTAGCAACTCGCACAAATGCCTTCGGATCTTAGTC
*
72641174 CGGATTTAGTCACTTAGCACAAAGCCTTCG
64 CGGATTTAGTAACTTAGCACAAAGCCTTCG
72641204 GGACTTGACA
Statistics
Matches: 87, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
115 3 0.03
116 17 0.20
117 59 0.68
118 8 0.09
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (116 bp):
GCACAAAGCCTTCGGGACTTAACCGGATTTAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCG
GATTTAGTAACTTAGCACAAAGCCTTCGATCTTAGTCGATTTAGTCACTTA
Found at i:72648413 original size:40 final size:40
Alignment explanation
Indices: 72648305--72648514 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72648295 CGGGATTTAA
* * * * *
72648305 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
72648345 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72648385 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72648425 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72648465 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
72648505 CCGGATATAT
1 CCGGATATAT
72648515 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:72652467 original size:40 final size:39
Alignment explanation
Indices: 72652417--72652681 Score: 227
Period size: 40 Copynumber: 6.6 Consensus size: 39
72652407 GCTACTCGTT
* * *
72652417 CAAATACCTTCGGGACATAGCCCGGTTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
* *
72652457 CAAAGGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
* *
72652497 CAAATGCCTTC-GGATCTTAGTCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGGTTTAGTAACTCGCA
* * * * * *
72652537 CAAATGCCTTC-GAATCTTAGTCTGAATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCG-GTTTAGTAAC-TCGCA
*
72652578 CAAA-GCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAACTCGCA
* * *
72652617 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA
72652658 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
72652682 ACATCATTCG
Statistics
Matches: 194, Mismatches: 22, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
39 13 0.07
40 157 0.81
41 24 0.12
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:72652529 original size:80 final size:80
Alignment explanation
Indices: 72652445--72652669 Score: 328
Period size: 80 Copynumber: 2.8 Consensus size: 80
72652435 AGCCCGGTTA
* * ** * *
72652445 TAGTAGCTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCACAAA-GCCTTC
72652508 GGATCTTAGTCCAGATT
64 GGATCTTAGTCCAGATT
* * *
72652525 TAGTAACTCGCACAAATGCCTTCGAATCTTAGTCTGAATTTAGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACTTAGCACAAAGCCTTCGG
*
72652590 ATCTTAGTCCGGATT
66 ATCTTAGTCCAGATT
72652605 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACTTAGCACAAAGCCTTCGG
72652670 GACTTAGCCC
Statistics
Matches: 130, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
79 2 0.02
80 120 0.92
81 8 0.06
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTCACTTAGCACAAAGCCTTCGG
ATCTTAGTCCAGATT
Found at i:72652682 original size:40 final size:40
Alignment explanation
Indices: 72652445--72652682 Score: 295
Period size: 40 Copynumber: 6.0 Consensus size: 40
72652435 AGCCCGGTTA
* * **
72652445 TAGTAGCTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATT
*
72652485 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCAGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
72652525 TAGTAACTCGCACAAATGCCTTCGAATCTTAGTCTGAATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* *
72652565 TAGTCACTTAGCACAAA-GCCTTCGGATCTTAGTCCGGATT
1 TAGTAAC-TCGCACAAATGCCTTCGGATCTTAGTCCGGATT
72652605 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
72652645 TAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
72652683 CATCATTCGA
Statistics
Matches: 174, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 11 0.06
40 144 0.83
41 19 0.11
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:72659543 original size:143 final size:143
Alignment explanation
Indices: 72659284--72659564 Score: 535
Period size: 143 Copynumber: 2.0 Consensus size: 143
72659274 GATTTGGGTA
72659284 GAAATCTTAAGGGAGTTGTAAGGTTAAACATTATCCTCAAAGGTTGATCAAATTAGTGAATTTAG
1 GAAATCTTAAGGGAGTTGTAAGGTTAAACATTATCCTCAAAGGTTGATCAAATTAGTGAATTTAG
*
72659349 AAAAATACTTAGTTGTGGAAAGCTAAGGTAGTGGAGTAGGCAATTGGGGCCCAACCACTCTAAAT
66 AAAAATACTTAGTTGTGGAAAGCTAAGGTAGTGGAGTAGGCAATTGAGGCCCAACCACTCTAAAT
72659414 TCTTGTGTATGGT
131 TCTTGTGTATGGT
*
72659427 GAAATCTTAAGGGAGTTGTAAGGTTAAACATTATCCTCAAAGGTTGATCAAATTAGTGAATTTGG
1 GAAATCTTAAGGGAGTTGTAAGGTTAAACATTATCCTCAAAGGTTGATCAAATTAGTGAATTTAG
72659492 AAAAATACTTAGTTGTGGAAAGCTAAGGTAGTGGAGTAGGCAATTGAGGCCCAACCACTCTAAAT
66 AAAAATACTTAGTTGTGGAAAGCTAAGGTAGTGGAGTAGGCAATTGAGGCCCAACCACTCTAAAT
*
72659557 TTTTGTGT
131 TCTTGTGT
72659565 TCAATTTTCT
Statistics
Matches: 135, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
143 135 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (143 bp):
GAAATCTTAAGGGAGTTGTAAGGTTAAACATTATCCTCAAAGGTTGATCAAATTAGTGAATTTAG
AAAAATACTTAGTTGTGGAAAGCTAAGGTAGTGGAGTAGGCAATTGAGGCCCAACCACTCTAAAT
TCTTGTGTATGGT
Found at i:72660069 original size:24 final size:23
Alignment explanation
Indices: 72660042--72660095 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 23
72660032 ATTTTGCATC
72660042 ATATTACTAA-ATTCACATTTAAAA
1 ATATTA-TAATATTCA-ATTTAAAA
*
72660066 ATATTTATAATATTTAATTTAAAA
1 ATA-TTATAATATTCAATTTAAAA
*
72660090 GTATTA
1 ATATTA
72660096 ATTTAAAAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 3 0.12
24 16 0.62
25 7 0.27
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (23 bp):
ATATTATAATATTCAATTTAAAA
Found at i:72660553 original size:30 final size:30
Alignment explanation
Indices: 72660517--72660579 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
72660507 AAAAATTTTC
*
72660517 TATTATAATATCTAAATTGATAAGTTAATA
1 TATTATAATATCTAAATTAATAAGTTAATA
72660547 TATTATAATATCTAAATTAATAAGTTAATA
1 TATTATAATATCTAAATTAATAAGTTAATA
72660577 TAT
1 TAT
72660580 CTTAATTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (30 bp):
TATTATAATATCTAAATTAATAAGTTAATA
Found at i:72669615 original size:49 final size:48
Alignment explanation
Indices: 72669504--72669767 Score: 213
Period size: 49 Copynumber: 5.5 Consensus size: 48
72669494 GATGCCGATC
* * * *
72669504 CCATGTTCCAAACAAGGTCTTACACTGGC-TCATATATCTAAG-TCGATG
1 CCATGTCCCAGAC-AGGTCTTACACTGACTTCATATATCGAAGCT-GATG
* * *
72669552 GCATGTCCTAGACAGGTCTTACACTGACTTTCATGTATCGAAGCTGATG
1 CCATGTCCCAGACAGGTCTTACACTGAC-TTCATATATCGAAGCTGATG
* * * *
72669601 CCATGTCCGAGACAGGTCTTACACTGGCTCTCATCTATCGATG-TCGATG
1 CCATGTCCCAGACAGGTCTTACACTGACT-TCATATATCGAAGCT-GATG
* * *
72669650 CCATGTCCCAGACAGGTCTTACACTGA---CACATGTC-AAGCCGATG
1 CCATGTCCCAGACAGGTCTTACACTGACTTCATATATCGAAGCTGATG
* * * * *
72669694 CCATGTCCCAGATAGATCTTACACT-AGCTTGCATATCTCGAGGCCGATG
1 CCATGTCCCAGACAGGTCTTACACTGA-CTT-CATATATCGAAGCTGATG
* *
72669743 -CATGTCCCAGACATGTCTTAAACTG
1 CCATGTCCCAGACAGGTCTTACACTG
72669768 GCTCTCGTCT
Statistics
Matches: 175, Mismatches: 28, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 29 0.17
45 5 0.03
47 14 0.08
48 37 0.21
49 88 0.50
50 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (48 bp):
CCATGTCCCAGACAGGTCTTACACTGACTTCATATATCGAAGCTGATG
Found at i:72669655 original size:98 final size:94
Alignment explanation
Indices: 72669504--72669854 Score: 317
Period size: 92 Copynumber: 3.7 Consensus size: 94
72669494 GATGCCGATC
* * * *
72669504 CCATGTTCCAAACAAGGTCTTACACTGG--CTCATATATCTAAGTCGATGGCATGTCCTAGACAG
1 CCATGTCCCAGAC-AGGTCTTACACTGGCTCTCATATATCGAAGTCGAT-GCATGTCCCAGACAG
72669567 GTCTTACACTGACTTTCATGTATCGAAGCTGATG
64 GTCTTACACTGAC-TTCATGT-TC-AAGCTGATG
* * *
72669601 CCATGTCCGAGACAGGTCTTACACTGGCTCTCATCTATCGATGTCGATGCCATGTCCCAGACAGG
1 CCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAAGTCGATG-CATGTCCCAGACAGG
* *
72669666 TCTTACACTGAC-ACATG-TCAAGCCGATG
65 TCTTACACTGACTTCATGTTCAAGCTGATG
* * * * * * *
72669694 CCATGTCCCAGATAGATCTTACACTAGCT-TGCATATCTCGAGGCCGATGCATGTCCCAGACATG
1 CCATGTCCCAGACAGGTCTTACACTGGCTCT-CATATATCGAAGTCGATGCATGTCCCAGACAGG
* *
72669758 TCTTAAACTGGC-TC-TCGTCTCAATGCTGATG
65 TCTTACACTGACTTCAT-GT-TCAA-GCTGATG
* * * ** * *
72669789 -CATATCCCAGGCATGTCTTACACTGGCTCTCATA-AT-GTGGCCGATGCATGTCCCAGACATGT
1 CCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAAGTCGATGCATGTCCCAGACAGGT
72669851 CTTA
66 CTTA
72669855 TACTAGCACA
Statistics
Matches: 215, Mismatches: 30, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
91 1 0.00
92 56 0.26
93 48 0.22
94 32 0.15
95 7 0.03
96 18 0.08
97 11 0.05
98 42 0.20
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (94 bp):
CCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGAAGTCGATGCATGTCCCAGACAGGT
CTTACACTGACTTCATGTTCAAGCTGATG
Found at i:72669835 original size:46 final size:46
Alignment explanation
Indices: 72669735--72669854 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 46
72669725 CATATCTCGA
*
72669735 GGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTCTCGTCTCAAT
1 GGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTCTCG-ATCAAT
* * * *
72669782 -GCTGATGCATATCCCAGGCATGTCTTACACTGGCTCTC-AT-AATGT
1 GGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTCTCGATCAA--T
72669827 GGCCGATGCATGTCCCAGACATGTCTTA
1 GGCCGATGCATGTCCCAGACATGTCTTA
72669855 TACTAGCACA
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
43 2 0.03
44 1 0.02
45 1 0.02
46 58 0.94
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGACATGTCTTAAACTGGCTCTCGATCAAT
Found at i:72672414 original size:29 final size:29
Alignment explanation
Indices: 72672372--72672453 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
72672362 TTATTTTTTT
72672372 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
72672401 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
*
72672430 TTTCCAGCACGCACACTTAGTGCC
1 TTTCCAGCATGCACACTTAGTGCC
72672454 TATCTCGTCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.29
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:72676232 original size:37 final size:37
Alignment explanation
Indices: 72676189--72676262 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
72676179 AGTTTTTGGC
72676189 GTCGTTGCCGGGGATTGGAAATAGATGAAATTTGGTT
1 GTCGTTGCCGGGGATTGGAAATAGATGAAATTTGGTT
72676226 GTCGTTGCCGGGGATTGGAAATAGATGAAATTTGGTT
1 GTCGTTGCCGGGGATTGGAAATAGATGAAATTTGGTT
72676263 TTGTTATTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.08, G:0.35, T:0.32
Consensus pattern (37 bp):
GTCGTTGCCGGGGATTGGAAATAGATGAAATTTGGTT
Found at i:72685453 original size:40 final size:40
Alignment explanation
Indices: 72685404--72685553 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 40
72685394 CAGAATTTAA
* * * *
72685404 CCGGATATAGCGACTCGCTCGATTGTCTTCGGGACATAGC
1 CCGGTTATAGTGACTCGCACGATTGCCTTCGGGACATAGC
* *
72685444 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGA-ATTAGC
1 CCGGTTATAGTGACTCGCACGATTGCCTTCGGGACA-TAGC
* * * *
72685484 CCGGATT-TAGTAACTCGCACGAATGCCTTCGGGACTTAAC
1 CCGG-TTATAGTGACTCGCACGATTGCCTTCGGGACATAGC
* * * * *
72685524 CCGGTTTTGGTAACTTGCACGAATGCCTTC
1 CCGGTTATAGTGACTCGCACGATTGCCTTC
72685554 AGGAATTGAC
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
39 3 0.03
40 87 0.95
41 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (40 bp):
CCGGTTATAGTGACTCGCACGATTGCCTTCGGGACATAGC
Found at i:72685529 original size:80 final size:80
Alignment explanation
Indices: 72685416--72685608 Score: 203
Period size: 80 Copynumber: 2.4 Consensus size: 80
72685406 GGATATAGCG
* * * * * *
72685416 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTGA-TTCGCAC-AATTGCCTTCGGGAA
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTT-GCACGAA-TGCCTTCAGGAA
*
72685479 TT-AGCCCGGATTTAGTA
64 TTGA-CCCAGATTTAGTA
* * *
72685496 ACTCGCACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTTGCACGAATGCCTTCAGGAATT
1 ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACGAATGCCTTCAGGAATT
*
72685561 GACCCAGATTTAGTC
66 GACCCAGATTTAGTA
* * *
72685576 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACGAATGCCTTCGGGACTTAGCCCGG
72685609 ACACCATTCG
Statistics
Matches: 94, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
80 63 0.67
81 31 0.33
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACGAATGCCTTCAGGAATT
GACCCAGATTTAGTA
Found at i:72695527 original size:40 final size:40
Alignment explanation
Indices: 72695426--72695646 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
72695416 TATTCGAATG
* * *
72695426 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
72695467 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
72695507 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
72695547 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
72695587 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
72695626 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
72695647 ATACTTGGGT
Statistics
Matches: 153, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.08
39 15 0.10
40 96 0.63
41 28 0.18
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:72703561 original size:38 final size:39
Alignment explanation
Indices: 72703499--72703589 Score: 94
Period size: 38 Copynumber: 2.3 Consensus size: 39
72703489 TGTGCTAAGT
* * * * *
72703499 GACTATATCCGGACTAAGATCCGAAAG-TTTGTGCGAGT
1 GACTATATCCGGGCCAAAACCCGAAAGATTTGTGCGAGC
* * *
72703537 TACTATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGC
1 GACTATATCCGGGCCAAAACCCGAAAG-ATTTGTGCGAGC
72703577 GACTATATCCGGG
1 GACTATATCCGGG
72703590 ATAAGTCCCG
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
38 21 0.50
40 21 0.50
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
GACTATATCCGGGCCAAAACCCGAAAGATTTGTGCGAGC
Found at i:72703582 original size:40 final size:40
Alignment explanation
Indices: 72703462--72703680 Score: 223
Period size: 40 Copynumber: 5.5 Consensus size: 40
72703452 TATTCGAATG
* *
72703462 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCT-AGTGACT
* * * * *
72703503 ATATCCGGACTAAGATCCGAAAG--TTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
72703541 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
72703581 ATATCCGGGATAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * **
72703621 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
72703660 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
72703681 ATACTTGGGT
Statistics
Matches: 146, Mismatches: 29, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
37 1 0.01
38 37 0.25
39 22 0.15
40 67 0.46
41 19 0.13
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:72719213 original size:30 final size:30
Alignment explanation
Indices: 72719179--72719239 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
72719169 TCCTTAACTC
72719179 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
72719209 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
72719239 A
1 A
72719240 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:72730382 original size:27 final size:27
Alignment explanation
Indices: 72729991--72730381 Score: 479
Period size: 27 Copynumber: 14.6 Consensus size: 27
72729981 AAAGTACTCC
*
72729991 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
72730018 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
72730045 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
72730072 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
***
72730099 C-AGTTTACAGAATTATTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
72730126 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
72730153 C-AGTTTACAGAATTACTATTTTACCCA
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
72730180 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
72730207 TAATTTACATAATTACCATTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* *
72730233 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
72730260 CGATTTACA-AATTACCGTTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
72730285 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
72730312 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
72730339 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
72730366 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
72730382 TAAAATACCC
Statistics
Matches: 317, Mismatches: 38, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
25 12 0.04
26 49 0.15
27 253 0.80
28 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:72731703 original size:9 final size:9
Alignment explanation
Indices: 72731691--72731767 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
72731681 TTTGATAAAC
72731691 ATGATATGT
1 ATGATATGT
*
72731700 ATGATATGCAC
1 ATGATATG--T
72731711 ATGATATGT
1 ATGATATGT
*
72731720 ATGATATGCAC
1 ATGATATG--T
*
72731731 ATGACATGT
1 ATGATATGT
*
72731740 ATGATATGCAC
1 ATGATATG--T
72731751 ATGATATGT
1 ATGATATGT
72731760 ATGATATG
1 ATGATATG
72731768 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:72731716 original size:11 final size:11
Alignment explanation
Indices: 72731700--72731771 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
72731690 CATGATATGT
72731700 ATGATATGCAC
1 ATGATATGCAC
*
72731711 ATGATATG--T
1 ATGATATGCAC
72731720 ATGATATGCAC
1 ATGATATGCAC
* *
72731731 ATGACATG--T
1 ATGATATGCAC
72731740 ATGATATGCAC
1 ATGATATGCAC
*
72731751 ATGATATG--T
1 ATGATATGCAC
72731760 ATGATATGCAC
1 ATGATATGCAC
72731771 A
1 A
72731772 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:72731779 original size:20 final size:20
Alignment explanation
Indices: 72731689--72731771 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
72731679 ATTTTGATAA
72731689 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
72731709 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
72731729 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
72731749 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
72731769 ACA
1 ACA
72731772 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:72731882 original size:24 final size:24
Alignment explanation
Indices: 72731826--72732015 Score: 260
Period size: 24 Copynumber: 8.0 Consensus size: 24
72731816 GAGGAAGTGA
72731826 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
72731849 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72731873 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72731897 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
72731921 AAAAGGGCTTACGCCCCAATTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
72731944 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
72731968 AAAAGGGCTTTTGCCCCAGTTTTT
1 AAAAGGGCTTATGCCCCAGTTATC
*
72731992 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72732016 ATGATAAAGC
Statistics
Matches: 149, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
23 42 0.28
24 97 0.65
25 10 0.07
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:72731895 original size:47 final size:47
Alignment explanation
Indices: 72731826--72731994 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
72731816 GAGGAAGTGA
72731826 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
72731873 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* * *
72731921 AAAAGGGCTTACGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* *
72731968 AAAAGGGCTTTTGCCCCAGTTTTTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
72731995 AGAGGCTAGG
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 68 0.61
48 44 0.39
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:72731996 original size:71 final size:72
Alignment explanation
Indices: 72731825--72732001 Score: 268
Period size: 71 Copynumber: 2.5 Consensus size: 72
72731815 GGAGGAAGTG
* *
72731825 AAAAAGGGCTTATGCCCCAGTTATT-AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCC
72731889 CAGTTAT
66 CAGTTAT
* * *
72731896 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAATTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCC
72731960 CAGTTAT
66 CAGTTAT
* *
72731967 AAAAAGGGCTTTTGCCCCAGTTTTTAAAAGAGGCT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCT
72732002 AGGCCTCCAG
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
71 71 0.75
72 24 0.25
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (72 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCC
CAGTTAT
Found at i:72732243 original size:31 final size:31
Alignment explanation
Indices: 72732208--72732271 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
72732198 CGTTTACCGT
*
72732208 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
72732239 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
72732270 AA
1 AA
72732272 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:72735496 original size:27 final size:27
Alignment explanation
Indices: 72735105--72735495 Score: 488
Period size: 27 Copynumber: 14.6 Consensus size: 27
72735095 AAAGTACTCC
*
72735105 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
72735132 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
** *
72735159 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
72735186 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
72735213 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
72735240 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
72735267 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
72735294 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * **
72735321 TAATTTACATAATTACAATTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* *
72735347 CGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
72735374 CGATTTACA-AATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
72735400 CGATTTACAGAATTACCATTTTA-CCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
72735426 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
72735453 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
72735480 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
72735496 TAAAATACCC
Statistics
Matches: 319, Mismatches: 36, Indels: 18
0.86 0.10 0.05
Matches are distributed among these distances:
26 72 0.23
27 244 0.76
28 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:72737141 original size:93 final size:93
Alignment explanation
Indices: 72737029--72737200 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72737019 GCCCATAAGT
* *
72737029 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72737094 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72737122 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72737187 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72737201 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72737196 original size:46 final size:46
Alignment explanation
Indices: 72737021--72737196 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72737011 TGTAACCCGC
* * *
72737021 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
72737067 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
72737117 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
72737160 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72737197 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72739625 original size:30 final size:30
Alignment explanation
Indices: 72739581--72739669 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
72739571 CAAAGATAAC
72739581 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
72739610 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
72739640 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
72739670 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:72739629 original size:15 final size:15
Alignment explanation
Indices: 72739581--72739660 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
72739571 CAAAGATAAC
*
72739581 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
72739595 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
72739610 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
72739625 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
72739640 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
72739655 AAGAAA
1 AAGAAA
72739661 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:72739669 original size:15 final size:15
Alignment explanation
Indices: 72739592--72739669 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
72739582 AGAAAACCGA
72739592 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
72739607 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
72739621 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
72739636 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
72739652 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
72739667 ATA
1 ATA
72739670 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72742728 original size:93 final size:93
Alignment explanation
Indices: 72742616--72742787 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72742606 GCCCATAAGT
* *
72742616 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72742681 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
72742709 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
72742774 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
72742788 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:72742783 original size:46 final size:46
Alignment explanation
Indices: 72742608--72742783 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
72742598 TGTAACCCGC
* * *
72742608 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
72742654 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
72742704 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
72742747 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
72742784 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:72745198 original size:9 final size:9
Alignment explanation
Indices: 72745186--72745262 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
72745176 TTTGATAAAC
72745186 ATGATATGT
1 ATGATATGT
*
72745195 ATGATATGCAC
1 ATGATATG--T
72745206 ATGATATGT
1 ATGATATGT
*
72745215 ATGATATGCAC
1 ATGATATG--T
*
72745226 ATGACATGT
1 ATGATATGT
*
72745235 ATGATATGCAC
1 ATGATATG--T
72745246 ATGATATGT
1 ATGATATGT
72745255 ATGATATG
1 ATGATATG
72745263 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:72745211 original size:11 final size:11
Alignment explanation
Indices: 72745195--72745266 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
72745185 CATGATATGT
72745195 ATGATATGCAC
1 ATGATATGCAC
*
72745206 ATGATATG--T
1 ATGATATGCAC
72745215 ATGATATGCAC
1 ATGATATGCAC
* *
72745226 ATGACATG--T
1 ATGATATGCAC
72745235 ATGATATGCAC
1 ATGATATGCAC
*
72745246 ATGATATG--T
1 ATGATATGCAC
72745255 ATGATATGCAC
1 ATGATATGCAC
72745266 A
1 A
72745267 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:72745274 original size:20 final size:20
Alignment explanation
Indices: 72745184--72745266 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
72745174 ATTTTGATAA
72745184 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
72745204 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
72745224 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
72745244 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
72745264 ACA
1 ACA
72745267 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:72745376 original size:24 final size:24
Alignment explanation
Indices: 72745320--72745509 Score: 260
Period size: 24 Copynumber: 8.0 Consensus size: 24
72745310 GAGGAAGTGA
72745320 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
72745343 TAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72745367 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72745391 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
** *
72745415 AAAAGGGCTTACACCCCAATTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
72745438 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
*
72745462 AAAAGGGCTTTTGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
72745486 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72745510 ATGATAAAGT
Statistics
Matches: 147, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
23 40 0.27
24 96 0.65
25 11 0.07
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:72745389 original size:47 final size:47
Alignment explanation
Indices: 72745320--72745484 Score: 258
Period size: 47 Copynumber: 3.5 Consensus size: 47
72745310 GAGGAAGTGA
*
72745320 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
72745367 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
** * *
72745415 AAAAGGGCTTACACCCCAATTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
72745462 AAAAGGGCTTTTGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
72745485 CAAAAGAGGC
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
47 64 0.60
48 42 0.40
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:72745443 original size:71 final size:72
Alignment explanation
Indices: 72745319--72745495 Score: 259
Period size: 71 Copynumber: 2.5 Consensus size: 72
72745309 GGAGGAAGTG
* ** * *
72745319 AAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACACCCCAATTATCAAAAGGGCTTATGCCC
72745383 CAGTTAT
66 CAGTTAT
* *
72745390 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACACCCCAATTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACACCCCAATTATCAAAAGGGCTTATGCCC
72745454 CAGTTAT
66 CAGTTAT
*
72745461 AAAAAGGGCTTTTGCCCCAGTTATCAAAAGAGGCT
1 AAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCT
72745496 AGGCCTCCAG
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
71 73 0.77
72 22 0.23
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (72 bp):
AAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACACCCCAATTATCAAAAGGGCTTATGCCC
CAGTTAT
Found at i:72745736 original size:30 final size:30
Alignment explanation
Indices: 72745702--72745764 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
72745692 CGTTTACCGT
*
72745702 AAAGGCTTCGGCCCAGTAATATGAAATTTG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
**
72745732 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
72745762 AAA
1 AAA
72745765 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATG
Found at i:72749005 original size:27 final size:27
Alignment explanation
Indices: 72748601--72748996 Score: 433
Period size: 27 Copynumber: 14.7 Consensus size: 27
72748591 AAAGTACTCC
*
72748601 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACTATTTTACCCT
* *
72748628 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACTATTTTACCCT
** * *
72748655 CGATTTGTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACTATTTTACCCT
**
72748682 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTATTTTACCCT
72748709 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTATTTTACCCT
**
72748736 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTATTTTACCCT
*
72748763 C-AGTTTACAAAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTATTTTACCCT
* *
72748790 CGATTTATAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACTATTTTACCCT
** * *
72748817 TAATTTACATAATTA-TAATTTTACCCC
1 CGATTTACAGAATTACT-ATTTTACCCT
* *
72748844 CGATTTACATAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-ATTTTACCCT
* *
72748871 CAATTTACAAAATTACTATTTTACCCT
1 CGATTTACAGAATTACTATTTTACCCT
* *
72748898 CGATTTACAGAATTACCATTTTATCCT
1 CGATTTACAGAATTACTATTTTACCCT
* *
72748925 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTATTTTACCCT
* ** *
72748952 TGATTTACAGAATTACTGCTTGACCCT
1 CGATTTACAGAATTACTATTTTACCCT
*
72748979 CGATTTACAAAATTACTA
1 CGATTTACAGAATTACTA
72748997 AAATACCCTT
Statistics
Matches: 311, Mismatches: 50, Indels: 16
0.82 0.13 0.04
Matches are distributed among these distances:
26 3 0.01
27 304 0.98
28 4 0.01
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
CGATTTACAGAATTACTATTTTACCCT
Found at i:72749007 original size:54 final size:54
Alignment explanation
Indices: 72748601--72748996 Score: 494
Period size: 54 Copynumber: 7.3 Consensus size: 54
72748591 AAAGTACTCC
* * * *
72748601 CGATTTACAGAATTACCATTTTACCCTC-AGTTTATAGAATTACTGTTTTACCCT
1 CGATTTACAAAATTACTATTTTACCCTCGA-TTTACAGAATTACCGTTTTACCCT
** *
72748655 CGATTTGTAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
*
72748709 C-AGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
* *
72748763 C-AGTTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACCATTTTACCCT
1 CGA-TTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
** * * * *
72748817 TAATTTACATAATTA-TAATTTTACCCCCGATTTACATAATTATCGTTTTACCCT
1 CGATTTACAAAATTACT-ATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
* * *
72748871 CAATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTTTATCCT
1 CGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
* * * * * * *
72748925 CGATTTATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTGCTTGACCCT
1 CGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
72748979 CGATTTACAAAATTACTA
1 CGATTTACAAAATTACTA
72748997 AAATACCCTT
Statistics
Matches: 298, Mismatches: 39, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
53 2 0.01
54 293 0.98
55 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
CGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCT
Done.