Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Chr08 129432109 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 129432109 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Warning! 350 characters in sequence are not A, C, G, or T File 238 of 425 Found at i:72750333 original size:9 final size:9 Alignment explanation
Indices: 72750321--72750397 Score: 64 Period size: 9 Copynumber: 7.9 Consensus size: 9 72750311 TTTGATAAAC 72750321 ATGATATGT 1 ATGATATGT * 72750330 ATGATATGCAC 1 ATGATATG--T 72750341 ATGATATGT 1 ATGATATGT * 72750350 ATGATATGCAC 1 ATGATATG--T * 72750361 ATGACATGT 1 ATGATATGT * 72750370 ATGATATGCAC 1 ATGATATG--T 72750381 ATGATATGT 1 ATGATATGT 72750390 ATGATATG 1 ATGATATG 72750398 CACACGAGAT Statistics Matches: 54, Mismatches: 8, Indels: 12 0.73 0.11 0.16 Matches are distributed among these distances: 9 31 0.57 11 23 0.43 ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35 Consensus pattern (9 bp): ATGATATGT Found at i:72750346 original size:11 final size:11 Alignment explanation
Indices: 72750330--72750401 Score: 66 Period size: 11 Copynumber: 7.1 Consensus size: 11 72750320 CATGATATGT 72750330 ATGATATGCAC 1 ATGATATGCAC * 72750341 ATGATATG--T 1 ATGATATGCAC 72750350 ATGATATGCAC 1 ATGATATGCAC * * 72750361 ATGACATG--T 1 ATGATATGCAC 72750370 ATGATATGCAC 1 ATGATATGCAC * 72750381 ATGATATG--T 1 ATGATATGCAC 72750390 ATGATATGCAC 1 ATGATATGCAC 72750401 A 1 A 72750402 CGAGATGTTC Statistics Matches: 47, Mismatches: 8, Indels: 12 0.70 0.12 0.18 Matches are distributed among these distances: 9 23 0.49 11 24 0.51 ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32 Consensus pattern (11 bp): ATGATATGCAC Found at i:72750409 original size:20 final size:20 Alignment explanation
Indices: 72750319--72750401 Score: 157 Period size: 20 Copynumber: 4.2 Consensus size: 20 72750309 ATTTTGATAA 72750319 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC 72750339 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC * 72750359 ACATGACATGTATGATATGC 1 ACATGATATGTATGATATGC 72750379 ACATGATATGTATGATATGC 1 ACATGATATGTATGATATGC 72750399 ACA 1 ACA 72750402 CGAGATGTTC Statistics Matches: 61, Mismatches: 2, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 20 61 1.00 ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33 Consensus pattern (20 bp): ACATGATATGTATGATATGC Found at i:72750512 original size:24 final size:24 Alignment explanation
Indices: 72750456--72750645 Score: 269 Period size: 24 Copynumber: 8.0 Consensus size: 24 72750446 GAGGAAGTGA * 72750456 AAAAGGGCTTATGCCCTAGTTAT- 1 AAAAGGGCTTATGCCCCAGTTATC * 72750479 TAAAGGGCTTATGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATC 72750503 AAAAGGGCTTATGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATC 72750527 AAAAGGGCTTATGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATC * * 72750551 AAAAGGGCTTACGCCCCAATTAT- 1 AAAAGGGCTTATGCCCCAGTTATC * * 72750574 TAAAGGGCTTATGCCCCAGTTATA 1 AAAAGGGCTTATGCCCCAGTTATC * 72750598 AAAAGGGCTTTTGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATC * 72750622 AAAAGAGGC-TAGGCCTCCAGTTAT 1 AAAAG-GGCTTATGCC-CCAGTTAT 72750646 ATGATAAAGT Statistics Matches: 150, Mismatches: 13, Indels: 6 0.89 0.08 0.04 Matches are distributed among these distances: 23 41 0.27 24 98 0.65 25 11 0.07 ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26 Consensus pattern (24 bp): AAAAGGGCTTATGCCCCAGTTATC Found at i:72750525 original size:47 final size:47 Alignment explanation
Indices: 72750456--72750620 Score: 267 Period size: 47 Copynumber: 3.5 Consensus size: 47 72750446 GAGGAAGTGA * 72750456 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC * 72750503 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC 1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC * * * 72750551 AAAAGGGCTTACGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATA 1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC * 72750598 AAAAGGGCTTTTGCCCCAGTTAT 1 AAAAGGGCTTATGCCCCAGTTAT 72750621 CAAAAGAGGC Statistics Matches: 108, Mismatches: 9, Indels: 2 0.91 0.08 0.02 Matches are distributed among these distances: 47 64 0.59 48 44 0.41 ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27 Consensus pattern (47 bp): AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC Found at i:72750579 original size:71 final size:72 Alignment explanation
Indices: 72750455--72750631 Score: 268 Period size: 71 Copynumber: 2.5 Consensus size: 72 72750445 GGAGGAAGTG * * * * 72750455 AAAAAGGGCTTATGCCCTAGTTAT-TAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCC 1 AAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCC 72750519 CAGTTAT 66 CAGTTAT * * 72750526 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAATTAT-TAAAGGGCTTATGCCC 1 AAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCC 72750590 CAGTTAT 66 CAGTTAT * 72750597 AAAAAGGGCTTTTGCCCCAGTTATCAAAAGAGGCT 1 AAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCT 72750632 AGGCCTCCAG Statistics Matches: 96, Mismatches: 8, Indels: 3 0.90 0.07 0.03 Matches are distributed among these distances: 71 72 0.75 72 24 0.25 ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26 Consensus pattern (72 bp): AAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCC CAGTTAT Found at i:72750877 original size:31 final size:31 Alignment explanation
Indices: 72750842--72750902 Score: 95 Period size: 31 Copynumber: 2.0 Consensus size: 31 72750832 TTACCGTAAA * 72750842 GGCTTCGGCCCAGTAATATGAAATTTGAAAG 1 GGCTTCGGCCCAGTAATATGAAATATGAAAG ** 72750873 GGCTTCGGCCCAGTGTTATGAAATATGAAA 1 GGCTTCGGCCCAGTAATATGAAATATGAAA 72750903 TATGAAATAT Statistics Matches: 27, Mismatches: 3, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 31 27 1.00 ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26 Consensus pattern (31 bp): GGCTTCGGCCCAGTAATATGAAATATGAAAG Found at i:72750901 original size:7 final size:7 Alignment explanation
Indices: 72750889--72750916 Score: 56 Period size: 7 Copynumber: 4.0 Consensus size: 7 72750879 GGCCCAGTGT 72750889 TATGAAA 1 TATGAAA 72750896 TATGAAA 1 TATGAAA 72750903 TATGAAA 1 TATGAAA 72750910 TATGAAA 1 TATGAAA 72750917 AGGGCTATGG Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 21 1.00 ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29 Consensus pattern (7 bp): TATGAAA Found at i:72754720 original size:22 final size:22 Alignment explanation
Indices: 72754694--72754738 Score: 72 Period size: 22 Copynumber: 2.0 Consensus size: 22 72754684 TATGCTAGAT 72754694 TATAATATATGCCTCCTAGACA 1 TATAATATATGCCTCCTAGACA * * 72754716 TATAATATATTCCTTCTAGACA 1 TATAATATATGCCTCCTAGACA 72754738 T 1 T 72754739 GTTAATGTTA Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 22 21 1.00 ACGTcount: A:0.36, C:0.20, G:0.07, T:0.38 Consensus pattern (22 bp): TATAATATATGCCTCCTAGACA Found at i:72760160 original size:46 final size:47 Alignment explanation
Indices: 72760054--72760169 Score: 135 Period size: 50 Copynumber: 2.4 Consensus size: 47 72760044 TGTCTTCGAC ** * * 72760054 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATATAAT 1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATATAAT * * * 72760104 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT 1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT 72760150 ATGGACTTACATGGCTCATT 1 ATGGACTTACATGGCTCATT 72760170 TCTATCCTGT Statistics Matches: 58, Mismatches: 8, Indels: 4 0.83 0.11 0.06 Matches are distributed among these distances: 46 28 0.48 50 30 0.52 ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35 Consensus pattern (47 bp): ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT Found at i:72764941 original size:40 final size:40 Alignment explanation
Indices: 72764882--72765088 Score: 209 Period size: 40 Copynumber: 5.2 Consensus size: 40 72764872 CAATTGAATG * * * * 72764882 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT * * * ** 72764922 ATATCCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGACC 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT * * ** 72764961 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT * * ** 72765001 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT * * * ** 72765041 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT 72765081 ATATCCGG 1 ATATCCGG 72765089 TTGTATTCCG Statistics Matches: 140, Mismatches: 26, Indels: 2 0.83 0.15 0.01 Matches are distributed among these distances: 39 33 0.24 40 107 0.76 ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT Found at i:72765061 original size:80 final size:79 Alignment explanation
Indices: 72764882--72765088 Score: 245 Period size: 79 Copynumber: 2.6 Consensus size: 79 72764872 CAATTGAATG * * ** * * * 72764882 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCA 1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA * 72764947 TTGTGCTAGTGACC 66 TTGTGCAAGTGACC * * * * 72764961 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCA 1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA ** 72765026 TTTGTGCAAGTCGTTC 66 -TTGTGCAAGT-GACC * * 72765042 -TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG 1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG 72765089 TTGTATTCCG Statistics Matches: 108, Mismatches: 18, Indels: 3 0.84 0.14 0.02 Matches are distributed among these distances: 79 54 0.50 80 52 0.48 81 2 0.02 ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25 Consensus pattern (79 bp): ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA TTGTGCAAGTGACC Found at i:72772947 original size:40 final size:40 Alignment explanation
Indices: 72772888--72773094 Score: 202 Period size: 40 Copynumber: 5.2 Consensus size: 40 72772878 CAATTGAATG * * * * 72772888 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT * * * * 72772928 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGA-C 1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT * * ** 72772967 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT * * ** 72773007 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT * * * ** 72773047 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT 72773087 ATATCCGG 1 ATATCCGG 72773095 TTGTATTCCG Statistics Matches: 140, Mismatches: 24, Indels: 6 0.82 0.14 0.04 Matches are distributed among these distances: 38 2 0.01 39 29 0.21 40 107 0.76 41 2 0.01 ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT Found at i:72773025 original size:79 final size:80 Alignment explanation
Indices: 72772890--72773094 Score: 236 Period size: 79 Copynumber: 2.6 Consensus size: 80 72772880 ATTGAATGAT * * ** * * * 72772890 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA- 1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT * 72772954 TTGTGCTAGT-G-ACAC 65 TTGTGCAAGTCGTAC-C * * * 72772969 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT 1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT * * 72773034 TGTGCAAGTCGTTCT 66 TGTGCAAGTCGTACC * * 72773049 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG 1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG 72773095 TTGTATTCCG Statistics Matches: 107, Mismatches: 16, Indels: 5 0.84 0.12 0.04 Matches are distributed among these distances: 78 2 0.02 79 60 0.56 80 44 0.41 81 1 0.01 ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25 Consensus pattern (80 bp): ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT TGTGCAAGTCGTACC Found at i:72782294 original size:78 final size:82 Alignment explanation
Indices: 72782159--72782342 Score: 256 Period size: 78 Copynumber: 2.3 Consensus size: 82 72782149 TCGAATGATG * 72782159 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT 72782223 TGTGCGAGTTACTA-AA 66 TGTGCGAGTTACTATAA * * ** 72782239 TCCGGG-TAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT 72782300 TTGTGCGAGTTACTATAA 65 TTGTGCGAGTTACTATAA * 72782318 -CCGGGCTATGTCCCGAAGGCATTTG 1 TCCGGGCTAAGTCCCGAAGGCATTTG 72782343 AACGAGTAGC Statistics Matches: 93, Mismatches: 6, Indels: 10 0.85 0.06 0.09 Matches are distributed among these distances: 77 1 0.01 78 55 0.59 79 18 0.19 80 19 0.20 ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27 Consensus pattern (82 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT TGTGCGAGTTACTATAA Found at i:72782349 original size:40 final size:40 Alignment explanation
Indices: 72782159--72782342 Score: 252 Period size: 40 Copynumber: 4.7 Consensus size: 40 72782149 TCGAATGATG * * * 72782159 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA * 72782199 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA 72782239 TCCGGG-TAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA * 72782277 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA * 72782318 -CCGGGCTATGTCCCGAAGGCATTTG 1 TCCGGGCTAAGTCCCGAAGGCATTTG 72782343 AACGAGTAGC Statistics Matches: 132, Mismatches: 7, Indels: 10 0.89 0.05 0.07 Matches are distributed among these distances: 38 34 0.26 39 9 0.07 40 79 0.60 41 10 0.08 ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27 Consensus pattern (40 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA Found at i:72789392 original size:47 final size:47 Alignment explanation
Indices: 72789339--72789821 Score: 777 Period size: 47 Copynumber: 10.3 Consensus size: 47 72789329 ACAAGATATG * * * 72789339 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA * 72789386 TATATGTGATAAGGCAGAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA 72789433 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA * * 72789480 TATATGTGATAAGGCAGAATGGCCAATGTGATGAATGTGAAAGTATA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA * * * 72789527 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA * 72789574 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA * * * * 72789621 TATATGTGATAGGGTCGAGTGGCCAACGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA * 72789668 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA * * ** 72789715 TATATGTGATAGGGTCGAGCGGCCAATGTGATGAATGTGAAAGTGTA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA * 72789762 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA 1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA * 72789809 TAAATGTGATAAG 1 TATATGTGATAAG 72789822 TCCCGAAGGG Statistics Matches: 399, Mismatches: 37, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 47 399 1.00 ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27 Consensus pattern (47 bp): TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA Found at i:72789415 original size:22 final size:22 Alignment explanation
Indices: 72789389--72789511 Score: 65 Period size: 22 Copynumber: 5.3 Consensus size: 22 72789379 AAGTGTATAT 72789389 ATGTGATAAGGCAGAATGGCCA 1 ATGTGATAAGGCAGAATGGCCA *** 72789411 ATGTGATGAATGTG-A-AAGTGTATA 1 ATGTGAT-AA-G-GCAGAA-TGGCCA * 72789435 TATGTGATAAGGCCGAATGGCCA 1 -ATGTGATAAGGCAGAATGGCCA *** 72789458 ATGTGATGAATGTG-A-AAGTGTATA 1 ATGTGAT-AA-G-GCAGAA-TGGCCA 72789482 TATGTGATAAGGCAGAATGGCCA 1 -ATGTGATAAGGCAGAATGGCCA 72789505 ATGTGAT 1 ATGTGAT 72789512 GAATGTGAAA Statistics Matches: 73, Mismatches: 14, Indels: 28 0.63 0.12 0.24 Matches are distributed among these distances: 22 23 0.32 23 17 0.23 24 17 0.23 25 16 0.22 ACGTcount: A:0.35, C:0.08, G:0.30, T:0.27 Consensus pattern (22 bp): ATGTGATAAGGCAGAATGGCCA Found at i:72791725 original size:27 final size:28 Alignment explanation
Indices: 72791668--72791737 Score: 106 Period size: 27 Copynumber: 2.5 Consensus size: 28 72791658 AAATTTGTAC ** 72791668 AGCACTAAGTGTGCGAATTTGATTATAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT * 72791696 AGCACTATGTGTGCG-AGCTGATTATAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT 72791723 AGCACTAAGTGTGCG 1 AGCACTAAGTGTGCG 72791738 GACTTATTAT Statistics Matches: 38, Mismatches: 4, Indels: 1 0.88 0.09 0.02 Matches are distributed among these distances: 27 24 0.63 28 14 0.37 ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31 Consensus pattern (28 bp): AGCACTAAGTGTGCGAAGCTGATTATAT Found at i:72791746 original size:27 final size:27 Alignment explanation
Indices: 72791668--72791749 Score: 103 Period size: 27 Copynumber: 3.0 Consensus size: 27 72791658 AAATTTGTAC * * 72791668 AGCACTAAGTGTGCGAATTTGATTATAT 1 AGCACTAAGTGTGCGGACTT-ATTATAT * * 72791696 AGCACTATGTGTGC-GAGCTGATTATAT 1 AGCACTAAGTGTGCGGA-CTTATTATAT 72791723 AGCACTAAGTGTGCGGACTTATTATAT 1 AGCACTAAGTGTGCGGACTTATTATAT 72791750 GCTTTTGCAT Statistics Matches: 46, Mismatches: 6, Indels: 5 0.81 0.11 0.09 Matches are distributed among these distances: 27 30 0.65 28 16 0.35 ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34 Consensus pattern (27 bp): AGCACTAAGTGTGCGGACTTATTATAT Found at i:72798874 original size:27 final size:28 Alignment explanation
Indices: 72798817--72798886 Score: 106 Period size: 27 Copynumber: 2.5 Consensus size: 28 72798807 AAATTTGTAC ** 72798817 AGCACTAAGTGTGCGAATTTGATTATAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT * 72798845 AGCACTATGTGTGCG-AGCTGATTATAT 1 AGCACTAAGTGTGCGAAGCTGATTATAT 72798872 AGCACTAAGTGTGCG 1 AGCACTAAGTGTGCG 72798887 GACTTATTAT Statistics Matches: 38, Mismatches: 4, Indels: 1 0.88 0.09 0.02 Matches are distributed among these distances: 27 24 0.63 28 14 0.37 ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31 Consensus pattern (28 bp): AGCACTAAGTGTGCGAAGCTGATTATAT Found at i:72798895 original size:27 final size:27 Alignment explanation
Indices: 72798817--72798898 Score: 103 Period size: 27 Copynumber: 3.0 Consensus size: 27 72798807 AAATTTGTAC * * 72798817 AGCACTAAGTGTGCGAATTTGATTATAT 1 AGCACTAAGTGTGCGGACTT-ATTATAT * * 72798845 AGCACTATGTGTGC-GAGCTGATTATAT 1 AGCACTAAGTGTGCGGA-CTTATTATAT 72798872 AGCACTAAGTGTGCGGACTTATTATAT 1 AGCACTAAGTGTGCGGACTTATTATAT 72798899 GCTTTTGCAT Statistics Matches: 46, Mismatches: 6, Indels: 5 0.81 0.11 0.09 Matches are distributed among these distances: 27 30 0.65 28 16 0.35 ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34 Consensus pattern (27 bp): AGCACTAAGTGTGCGGACTTATTATAT Found at i:72804726 original size:40 final size:40 Alignment explanation
Indices: 72804487--72804712 Score: 296 Period size: 40 Copynumber: 5.7 Consensus size: 40 72804477 TCGAATGATG * * ** * 72804487 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGGCTATA 1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA ** * 72804527 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA ** 72804567 TCTAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA 72804607 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA 1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA 72804647 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA 1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA * * 72804688 -CCGGGCTATGTCCCGAAGGCATTTG 1 TCCGGGTTAAGTCCCGAAGGCATTTG 72804713 AACGAGTAGC Statistics Matches: 167, Mismatches: 15, Indels: 8 0.88 0.08 0.04 Matches are distributed among these distances: 39 1 0.01 40 156 0.93 41 10 0.06 ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27 Consensus pattern (40 bp): TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA Found at i:72816045 original size:24 final size:24 Alignment explanation
Indices: 72816009--72816068 Score: 102 Period size: 24 Copynumber: 2.5 Consensus size: 24 72815999 TTTTTTGAAA * 72816009 GTTTCGACAATGCTCCGAAACCCT 1 GTTTCGACGATGCTCCGAAACCCT * 72816033 GTTTCGACGATGCTCTGAAACCCT 1 GTTTCGACGATGCTCCGAAACCCT 72816057 GTTTCGACGATG 1 GTTTCGACGATG 72816069 GATATGGGTT Statistics Matches: 34, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 24 34 1.00 ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28 Consensus pattern (24 bp): GTTTCGACGATGCTCCGAAACCCT Found at i:72818644 original size:39 final size:39 Alignment explanation
Indices: 72818521--72818704 Score: 185 Period size: 40 Copynumber: 4.7 Consensus size: 39 72818511 ATAGTGATTC * * * * 72818521 GCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCA 1 GCACAAATGCCTTCGGGACTTAACCC-GTTTTAGTAACT-A * * * 72818562 -CACGAATGCCTTCGGGACTTAACCCAGTTTTGGTAACTC 1 GCACAAATGCCTTCGGGACTTAACCC-GTTTTAGTAACTA * 72818601 GCACAAATGCCTTCGGGACTTAACCCGTTTTGGTAACTA 1 GCACAAATGCCTTCGGGACTTAACCCGTTTTAGTAACTA * * * * 72818640 GCACAAATGCCTTCGGGAATTGACCCG-ATTAGTCACTTA 1 GCACAAATGCCTTCGGGACTTAACCCGTTTTAGTAAC-TA * * 72818679 GCACAAAAGCCTTC-GGACTTAGCCCG 1 GCACAAATGCCTTCGGGACTTAACCCG 72818705 GACACCATTC Statistics Matches: 122, Mismatches: 19, Indels: 7 0.82 0.13 0.05 Matches are distributed among these distances: 38 15 0.12 39 52 0.43 40 55 0.45 ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26 Consensus pattern (39 bp): GCACAAATGCCTTCGGGACTTAACCCGTTTTAGTAACTA Found at i:72826615 original size:40 final size:39 Alignment explanation
Indices: 72826571--72826786 Score: 208 Period size: 40 Copynumber: 5.5 Consensus size: 39 72826561 GCTCGATTGT * * * 72826571 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC 1 CTTCGGGAC-TTAGCCCGGTT-TAGTAACTCGCACAAATGC * * 72826611 CTTCGGGAATTAGCCCGGATTTAGTAACT--CACGAATGC 1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC * * 72826649 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC 1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC * * 72826689 CTTCGGGACTTAACCCGGTTTTGGTAACT-GCACAAATGC 1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC * * * * 72826728 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC 1 CTTCGGGACTTAG-CCCGG-TTTAGTAAC-TCGCACAAATGC 72826769 CTTCGGGACTTAGCCCGG 1 CTTCGGGACTTAGCCCGG 72826787 ACACCATTCG Statistics Matches: 151, Mismatches: 17, Indels: 15 0.83 0.09 0.08 Matches are distributed among these distances: 38 32 0.21 39 34 0.23 40 58 0.38 41 26 0.17 42 1 0.01 ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27 Consensus pattern (39 bp): CTTCGGGACTTAGCCCGGTTTAGTAACTCGCACAAATGC Found at i:72826666 original size:78 final size:77 Alignment explanation
Indices: 72826571--72826787 Score: 238 Period size: 78 Copynumber: 2.7 Consensus size: 77 72826561 GCTCGATTGT * * * * 72826571 CTTCGGGACATTGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGT 1 CTTCGGGAC-TTACCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT * 72826636 AACT-CACGAATGC 64 AACTGCACAAATGC * * * * * 72826649 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGT 1 CTTCGGGACTT-ACCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT 72826714 AACTGCACAAATGC 64 AACTGCACAAATGC * * * * 72826728 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA 1 CTTCGGGACTT-ACCCGG-TTTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCGGA 72826788 CACCATTCGA Statistics Matches: 115, Mismatches: 20, Indels: 6 0.82 0.14 0.04 Matches are distributed among these distances: 77 2 0.02 78 54 0.47 79 31 0.27 80 28 0.24 ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27 Consensus pattern (77 bp): CTTCGGGACTTACCCGGTTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAA CTGCACAAATGC Found at i:72826733 original size:39 final size:40 Alignment explanation
Indices: 72826601--72826787 Score: 218 Period size: 40 Copynumber: 4.7 Consensus size: 40 72826591 ATAGTGATTC * * * 72826601 GCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACT- 1 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTA * * * * 72826640 -CACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTC 1 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTA * * 72826679 GCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACT- 1 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTA * * * 72826718 GCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTA 1 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TA * * 72826759 GCACAAAAGCCTTCGGGACTTAGCCCGGA 1 GCACAAATGCCTTCGGGACTTAACCCGGA 72826788 CACCATTCGA Statistics Matches: 128, Mismatches: 16, Indels: 6 0.85 0.11 0.04 Matches are distributed among these distances: 38 32 0.25 39 33 0.26 40 38 0.30 41 25 0.20 ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26 Consensus pattern (40 bp): GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTA Found at i:72831578 original size:36 final size:36 Alignment explanation
Indices: 72831522--72831593 Score: 110 Period size: 36 Copynumber: 2.0 Consensus size: 36 72831512 GCCACGGAAG 72831522 AAAGTTCACCAGTTTAGCAGTAAAGGAAAACTAACT 1 AAAGTTCACCAGTTTAGCAGTAAAGGAAAACTAACT * * 72831558 AAAGTTCACC-GATTTGGCAGTAAAGGCAAACTAACT 1 AAAGTTCACCAG-TTTAGCAGTAAAGGAAAACTAACT 72831594 CTATGGTTTA Statistics Matches: 33, Mismatches: 2, Indels: 2 0.89 0.05 0.05 Matches are distributed among these distances: 35 1 0.03 36 32 0.97 ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22 Consensus pattern (36 bp): AAAGTTCACCAGTTTAGCAGTAAAGGAAAACTAACT Found at i:72838770 original size:39 final size:39 Alignment explanation
Indices: 72838686--72838838 Score: 225 Period size: 39 Copynumber: 3.9 Consensus size: 39 72838676 TATGGTAACC ** * * 72838686 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT 1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT * * 72838726 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT * 72838765 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT * 72838804 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC 72838839 TCGAACATTC Statistics Matches: 103, Mismatches: 10, Indels: 1 0.90 0.09 0.01 Matches are distributed among these distances: 39 88 0.85 40 15 0.15 ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25 Consensus pattern (39 bp): CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT Found at i:72838811 original size:78 final size:79 Alignment explanation
Indices: 72838655--72838837 Score: 278 Period size: 78 Copynumber: 2.3 Consensus size: 79 72838645 TCGTTCAAAC * * ** 72838655 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC 1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC 72838720 ACAATTTGCACAATT 65 ACAATTTGCACAATT * ** * 72838735 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA 1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA 72838799 CAATTTGCACAATT 66 CAATTTGCACAATT 72838813 GCCTTCGGGCTTAGCCCGGATATCA 1 GCCTTCGGGCTTAGCCCGGATATCA 72838838 CTCGAACATT Statistics Matches: 95, Mismatches: 8, Indels: 2 0.90 0.08 0.02 Matches are distributed among these distances: 78 54 0.57 79 32 0.34 80 9 0.09 ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25 Consensus pattern (79 bp): GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA CAATTTGCACAATT Found at i:72841013 original size:8 final size:8 Alignment explanation
Indices: 72841000--72841029 Score: 51 Period size: 8 Copynumber: 3.8 Consensus size: 8 72840990 TCAGAAAATC 72841000 CCGAAAAG 1 CCGAAAAG * 72841008 CCGAAATG 1 CCGAAAAG 72841016 CCGAAAAG 1 CCGAAAAG 72841024 CCGAAA 1 CCGAAA 72841030 GTTTGGCTAC Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 20 1.00 ACGTcount: A:0.47, C:0.27, G:0.23, T:0.03 Consensus pattern (8 bp): CCGAAAAG Found at i:72841019 original size:16 final size:16 Alignment explanation
Indices: 72840995--72841029 Score: 61 Period size: 16 Copynumber: 2.2 Consensus size: 16 72840985 GTAGATCAGA 72840995 AAATCCCGAAAAGCCG 1 AAATCCCGAAAAGCCG * 72841011 AAATGCCGAAAAGCCG 1 AAATCCCGAAAAGCCG 72841027 AAA 1 AAA 72841030 GTTTGGCTAC Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 16 18 1.00 ACGTcount: A:0.49, C:0.26, G:0.20, T:0.06 Consensus pattern (16 bp): AAATCCCGAAAAGCCG Found at i:72841276 original size:29 final size:29 Alignment explanation
Indices: 72841225--72841336 Score: 122 Period size: 28 Copynumber: 4.0 Consensus size: 29 72841215 CATGATTGTA * 72841225 AATGTGATTTGGGCCTAGT-GGCCATATG 1 AATGTGATTTGGGCCTAATGGGCCATATG * * * 72841253 AATGTGATTTTGGCCTAATGGGCCACATA 1 AATGTGATTTGGGCCTAATGGGCCATATG * 72841282 AATGTGA-ATGGGCCTAATGGGCCATATG 1 AATGTGATTTGGGCCTAATGGGCCATATG * * * * 72841310 AAAGAGA-TTGGGCCTAGTGGGCTATAT 1 AATGTGATTTGGGCCTAATGGGCCATAT 72841337 ATATATGTAT Statistics Matches: 70, Mismatches: 13, Indels: 2 0.82 0.15 0.02 Matches are distributed among these distances: 28 56 0.80 29 14 0.20 ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29 Consensus pattern (29 bp): AATGTGATTTGGGCCTAATGGGCCATATG Found at i:72841331 original size:56 final size:57 Alignment explanation
Indices: 72841223--72841331 Score: 141 Period size: 57 Copynumber: 1.9 Consensus size: 57 72841213 AGCATGATTG * * * * * 72841223 TAAATGTGATTTGGGCCTAGTGGCCATATGAATGTGATTTTGGCCTAATGGGCCACA 1 TAAATGTGATATGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA * 72841280 TAAATGTGA-ATGGGCCTAATGGGCCATATGAAAGAGA-TTGGGCCTAGTGGGC 1 TAAATGTGATATGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAATGGGC 72841332 TATATATATA Statistics Matches: 45, Mismatches: 6, Indels: 3 0.83 0.11 0.06 Matches are distributed among these distances: 56 22 0.49 57 23 0.51 ACGTcount: A:0.27, C:0.15, G:0.31, T:0.28 Consensus pattern (57 bp): TAAATGTGATATGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA Found at i:72841656 original size:27 final size:26 Alignment explanation
Indices: 72841621--72841673 Score: 70 Period size: 27 Copynumber: 2.0 Consensus size: 26 72841611 AACTCGTAAT * * * 72841621 AAAGGAAAATTACTGAAATGCCCCTA 1 AAAGGAAAATGACTAAAATACCCCTA 72841647 AAAGTGAAAATGACTAAAATACCCCTA 1 AAAG-GAAAATGACTAAAATACCCCTA 72841674 TGCGATGATT Statistics Matches: 23, Mismatches: 3, Indels: 1 0.85 0.11 0.04 Matches are distributed among these distances: 26 4 0.17 27 19 0.83 ACGTcount: A:0.49, C:0.19, G:0.13, T:0.19 Consensus pattern (26 bp): AAAGGAAAATGACTAAAATACCCCTA Found at i:72849153 original size:20 final size:20 Alignment explanation
Indices: 72849130--72849191 Score: 72 Period size: 20 Copynumber: 3.1 Consensus size: 20 72849120 GCAAATTATA * 72849130 CCCTGATTACACTTATGTGC 1 CCCTGATTGCACTTATGTGC * * 72849150 CCCTGTTTGTACTT-TGGTGC 1 CCCTGATTGCACTTAT-GTGC * 72849170 CCCTGATTGCACTTACGTGC 1 CCCTGATTGCACTTATGTGC 72849190 CC 1 CC 72849192 TTGTTTGTAC Statistics Matches: 34, Mismatches: 6, Indels: 4 0.77 0.14 0.09 Matches are distributed among these distances: 19 1 0.03 20 33 0.97 ACGTcount: A:0.13, C:0.32, G:0.19, T:0.35 Consensus pattern (20 bp): CCCTGATTGCACTTATGTGC Found at i:72849175 original size:40 final size:40 Alignment explanation
Indices: 72849130--72849207 Score: 129 Period size: 40 Copynumber: 1.9 Consensus size: 40 72849120 GCAAATTATA * 72849130 CCCTGATTACACTTATGTGCCCCTGTTTGTACTTTGGTGC 1 CCCTGATTACACTTACGTGCCCCTGTTTGTACTTTGGTGC * * 72849170 CCCTGATTGCACTTACGTGCCCTTGTTTGTACTTTGGT 1 CCCTGATTACACTTACGTGCCCCTGTTTGTACTTTGGT 72849208 ACTGCTAAAT Statistics Matches: 35, Mismatches: 3, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 40 35 1.00 ACGTcount: A:0.12, C:0.27, G:0.21, T:0.41 Consensus pattern (40 bp): CCCTGATTACACTTACGTGCCCCTGTTTGTACTTTGGTGC Found at i:72849203 original size:20 final size:20 Alignment explanation
Indices: 72849140--72849203 Score: 74 Period size: 20 Copynumber: 3.2 Consensus size: 20 72849130 CCCTGATTAC * 72849140 ACTTATGTGCCCCTGTTTGT 1 ACTTACGTGCCCCTGTTTGT ** * * 72849160 ACTTTGGTGCCCCTGATTGC 1 ACTTACGTGCCCCTGTTTGT * 72849180 ACTTACGTGCCCTTGTTTGT 1 ACTTACGTGCCCCTGTTTGT 72849200 ACTT 1 ACTT 72849204 TGGTACTGCT Statistics Matches: 35, Mismatches: 9, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 20 35 1.00 ACGTcount: A:0.11, C:0.27, G:0.20, T:0.42 Consensus pattern (20 bp): ACTTACGTGCCCCTGTTTGT Found at i:72849221 original size:40 final size:40 Alignment explanation
Indices: 72849139--72849221 Score: 103 Period size: 40 Copynumber: 2.1 Consensus size: 40 72849129 ACCCTGATTA * * * * 72849139 CACTTATGTGCCCCTGTTTGTACTTTGGTGCCCCTGATTG 1 CACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTAAATG * ** 72849179 CACTTACGTGCCCTTGTTTGTACTTTGGTACTGCTAAATG 1 CACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTAAATG 72849219 CAC 1 CAC 72849222 ATCGGCTCCC Statistics Matches: 36, Mismatches: 7, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 40 36 1.00 ACGTcount: A:0.14, C:0.27, G:0.20, T:0.39 Consensus pattern (40 bp): CACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTAAATG Found at i:72855583 original size:40 final size:40 Alignment explanation
Indices: 72855406--72855587 Score: 280 Period size: 40 Copynumber: 4.6 Consensus size: 40 72855396 AAACCAAGTA * * * 72855406 CCTTCGGGAATTAGCCGGA-TATAGCT-ACTCGCTCAAATG 1 CCTTCGGGACTTAGCCCGATTATAG-TAACTCGCACAAATG * 72855445 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGTACAAATG 1 CCTTCGGGACTTAGCCC-GATTATAGTAACTCGCACAAATG * 72855485 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG 72855525 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG 1 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG 72855565 CCTTCGGGACTTAGCCCGATTAT 1 CCTTCGGGACTTAGCCCGATTAT 72855588 CATCCGAATA Statistics Matches: 133, Mismatches: 7, Indels: 5 0.92 0.05 0.03 Matches are distributed among these distances: 39 17 0.13 40 116 0.87 ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26 Consensus pattern (40 bp): CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG Found at i:72859445 original size:40 final size:40 Alignment explanation
Indices: 72859390--72859557 Score: 187 Period size: 40 Copynumber: 4.2 Consensus size: 40 72859380 TGAATGATAC * * 72859390 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT * * 72859430 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT * * ** * 72859470 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT * * * * * 72859510 CCGGGTTAAGGCCCGAAGGCAATTGTGCTTGTGGTTATAT 1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT 72859550 CC-GGCTAA 1 CCGGGCTAA 72859558 ATTCTGAAGA Statistics Matches: 105, Mismatches: 21, Indels: 5 0.80 0.16 0.04 Matches are distributed among these distances: 39 6 0.06 40 97 0.92 41 2 0.02 ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26 Consensus pattern (40 bp): CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT Found at i:72861496 original size:26 final size:24 Alignment explanation
Indices: 72861440--72861496 Score: 62 Period size: 26 Copynumber: 2.2 Consensus size: 24 72861430 CAGGACACAT * 72861440 AGCATAATAACCAAAATGAACTTA 1 AGCATAATAAACAAAATGAACTTA 72861464 AGTCATAATCAAACAAAACTGAA-TTCA 1 AG-CATAAT-AAACAAAA-TGAACTT-A 72861491 AGCATA 1 AGCATA 72861497 GAAGTTAGGC Statistics Matches: 28, Mismatches: 1, Indels: 6 0.80 0.03 0.17 Matches are distributed among these distances: 24 2 0.07 25 6 0.21 26 13 0.46 27 7 0.25 ACGTcount: A:0.53, C:0.18, G:0.09, T:0.21 Consensus pattern (24 bp): AGCATAATAAACAAAATGAACTTA Found at i:72867679 original size:12 final size:14 Alignment explanation
Indices: 72867664--72867695 Score: 50 Period size: 14 Copynumber: 2.4 Consensus size: 14 72867654 GTGAGAACAC 72867664 ATGTGTA-G-TACT 1 ATGTGTAGGCTACT 72867676 ATGTGTAGGCTACT 1 ATGTGTAGGCTACT 72867690 ATGTGT 1 ATGTGT 72867696 TTAAGATGGT Statistics Matches: 18, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 12 7 0.39 13 1 0.06 14 10 0.56 ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41 Consensus pattern (14 bp): ATGTGTAGGCTACT Found at i:72867780 original size:50 final size:50 Alignment explanation
Indices: 72867661--72867956 Score: 294 Period size: 50 Copynumber: 5.9 Consensus size: 50 72867651 ATTGTGAGAA * * *** * 72867661 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTTTAGGT 1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG--TTAGGT * * * 72867713 CACGTGTGTAGTGCTAAGTGCAGCCTACTATGTGTACCAGATAGTTAGGT 1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT * ** * * * 72867763 TACATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCA-ACAACTTCA-AT 1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGA-TAGTT-AGGT * * * 72867814 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGT 1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT * * * * 72867864 CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACC-GA-AGTGTTGGT 1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGT-TAGGT * * 72867913 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG 1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG 72867957 CTTCAGTTAC Statistics Matches: 199, Mismatches: 37, Indels: 17 0.79 0.15 0.07 Matches are distributed among these distances: 48 2 0.01 49 40 0.20 50 79 0.40 51 42 0.21 52 36 0.18 ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31 Consensus pattern (50 bp): CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT Found at i:72867842 original size:101 final size:99 Alignment explanation
Indices: 72867712--72867956 Score: 301 Period size: 101 Copynumber: 2.5 Consensus size: 99 72867702 TGGTTTTAGG * * * 72867712 TCACGTGTGTAGTGCTAAGTGCAGCCTACTATGTGTACCAGATAGTTAGGTTACATGTGTAGTAC 1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACATGTGTAGTAC * * 72867777 TAAGTGCAGGCTACTATACGTACCCAACAACTTCAA 66 TAAGTACAGGCTACTACACGTACCCAA-AACTT-AA * * * 72867813 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC 1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACATGTGTAGTAC ** * *** ** 72867878 TAAGTACAGGCTACTACGTGTACCGAAGTGTTGG 66 TAAGTACAGGCTACTACACGTACCCAAAACTTAA * * * 72867912 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG 1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG 72867957 CTTCAGTTAC Statistics Matches: 123, Mismatches: 21, Indels: 2 0.84 0.14 0.01 Matches are distributed among these distances: 99 40 0.33 100 2 0.02 101 81 0.66 ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29 Consensus pattern (99 bp): TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACATGTGTAGTAC TAAGTACAGGCTACTACACGTACCCAAAACTTAA Found at i:72867988 original size:150 final size:152 Alignment explanation
Indices: 72867668--72867950 Score: 392 Period size: 150 Copynumber: 1.9 Consensus size: 152 72867658 GAACACATGT * * * * 72867668 GTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTGCTAAGTG 1 GTAGTACTATGTGCAGGCTACTATGTGTATAAGATGG-TTTAGGTCACGTGTGTAGTACTAAGTA * * 72867733 CAGCCTACTATGTGTACCAGATAGTTAGGTTACATGTGTAGTACTAAGTGCAGGCTACTATACGT 65 CAGCCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACGT ** * 72867798 ACCCAACAACTTCAATCACGTGT 130 ACCCAACAACTTCAATCACAAGG * * 72867821 GTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGG-TTAGGTCACGTGTGTAGTACTAAGTAC 1 GTAGTACTATGTGCAGGCTACTATGTGTATAAGATGGTTTAGGTCACGTGTGTAGTACTAAGTAC * * * * 72867885 AGGCTACTACGTGTACC-GA-AGTGTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT 66 AGCCTACTACGTGTACCAGATAGT-TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACGT 72867948 ACC 130 ACC 72867951 AGATAGCTTC Statistics Matches: 117, Mismatches: 12, Indels: 5 0.87 0.09 0.04 Matches are distributed among these distances: 149 3 0.03 150 41 0.35 151 40 0.34 153 33 0.28 ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31 Consensus pattern (152 bp): GTAGTACTATGTGCAGGCTACTATGTGTATAAGATGGTTTAGGTCACGTGTGTAGTACTAAGTAC AGCCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACGTA CCCAACAACTTCAATCACAAGG Found at i:72872476 original size:41 final size:40 Alignment explanation
Indices: 72872425--72872562 Score: 140 Period size: 41 Copynumber: 3.4 Consensus size: 40 72872415 TATTATAATC * * 72872425 TCGCACACTAAGTGCCTTTCATAGCCAAAGTTATCTCAACT 1 TCGCACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAA-T * 72872466 TCGCACACTAAGTACCATATAT-ATAGCCGAAGCTAT-TCAAT 1 TCGCACACTAAGTGCC-T-T-TCATAGCCGAAGCTATCTCAAT * * 72872507 TCGCACACTGAGTG-CTTTACATAGCCGAAGCTATCTCGAAA 1 TCGCACACTAAGTGCCTTT-CATAGCCGAAGCTATCTC-AAT * 72872548 T-GCACACAAAGTGCC 1 TCGCACACTAAGTGCC 72872563 ATACGTAGTC Statistics Matches: 81, Mismatches: 8, Indels: 16 0.77 0.08 0.15 Matches are distributed among these distances: 37 1 0.01 38 1 0.01 39 15 0.19 40 13 0.16 41 32 0.40 42 5 0.06 43 13 0.16 44 1 0.01 ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25 Consensus pattern (40 bp): TCGCACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAAT Found at i:72872536 original size:39 final size:39 Alignment explanation
Indices: 72872387--72872540 Score: 130 Period size: 41 Copynumber: 3.8 Consensus size: 39 72872377 TATATCTCGT ** * * * 72872387 ACACTAAGTGCTAAAGCTTAGCTGAAGCTATTATAATCTCGC 1 ACACTAAGTGCTTTA-CATAGCCGAAGCTATT-CAAT-TCGC * * 72872429 ACACTAAGTGCCTTT-CATAGCCAAAGTTATCTCAACTTCGC 1 ACACTAAGTG-CTTTACATAGCCGAAGCTAT-TCAA-TTCGC * * * 72872470 ACACTAAGTACCATATATATAGCCGAAGCTATTCAATTCGC 1 ACACTAAGT-GC-TTTACATAGCCGAAGCTATTCAATTCGC * 72872511 ACACTGAGTGCTTTACATAGCCGAAGCTAT 1 ACACTAAGTGCTTTACATAGCCGAAGCTAT 72872541 CTCGAAATGC Statistics Matches: 90, Mismatches: 16, Indels: 15 0.74 0.13 0.12 Matches are distributed among these distances: 39 17 0.19 40 1 0.01 41 40 0.44 42 18 0.20 43 14 0.16 ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28 Consensus pattern (39 bp): ACACTAAGTGCTTTACATAGCCGAAGCTATTCAATTCGC Found at i:72877211 original size:79 final size:80 Alignment explanation
Indices: 72877028--72877250 Score: 394 Period size: 79 Copynumber: 2.8 Consensus size: 80 72877018 ATATATGTGC * 72877028 AAGGCATTCGTGCGGGTTATTATAACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA 72877093 CCGGGTTAAGTCCCG 66 CCGGGTTAAGTCCCG 72877108 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGT-CGGGTTATTATAA 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA 72877172 CCGGGTTAAGTCCCG 66 CCGGGTTAAGTCCCG * * * * 72877187 AAGGCATTCCTGTGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATA 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATA 72877251 TCCGAGCCAA Statistics Matches: 137, Mismatches: 5, Indels: 2 0.95 0.03 0.01 Matches are distributed among these distances: 79 77 0.56 80 60 0.44 ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30 Consensus pattern (80 bp): AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA CCGGGTTAAGTCCCG Found at i:72877268 original size:40 final size:40 Alignment explanation
Indices: 72877028--72877250 Score: 394 Period size: 40 Copynumber: 5.6 Consensus size: 40 72877018 ATATATGTGC * 72877028 AAGGCATTCGTGCGGGTTATTATAACTGGGTTAAGTCCCG 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG 72877068 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG 72877108 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG 72877148 AAGGCATTCGT-CGGGTTATTATAACCGGGTTAAGTCCCG 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG * * 72877187 AAGGCATTCCTGTGGGTTATTATAACCGGGTTAAGTCCCG 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG * * 72877227 AAGGCATTCGTGCTGGTTGTTATA 1 AAGGCATTCGTGCGGGTTATTATA 72877251 TCCGAGCCAA Statistics Matches: 175, Mismatches: 7, Indels: 2 0.95 0.04 0.01 Matches are distributed among these distances: 39 38 0.22 40 137 0.78 ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30 Consensus pattern (40 bp): AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG Found at i:72877268 original size:119 final size:120 Alignment explanation
Indices: 72877028--72877268 Score: 376 Period size: 119 Copynumber: 2.0 Consensus size: 120 72877018 ATATATGTGC * * 72877028 AAGGCATTCGTGCGGGTTATTATAACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATAA * ** * 72877093 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG 66 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGAGCCAAATCCCG * 72877148 AAGGCATTCGT-CGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGTGGGTTATTATAA 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATAA * * * * 72877212 CCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATATCCGAGCCAAATTCCG 66 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGAGCCAAATCCCG 72877267 AA 1 AA 72877269 AGTATTTATG Statistics Matches: 110, Mismatches: 11, Indels: 1 0.90 0.09 0.01 Matches are distributed among these distances: 119 99 0.90 120 11 0.10 ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29 Consensus pattern (120 bp): AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATAA CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGAGCCAAATCCCG Found at i:72885436 original size:40 final size:40 Alignment explanation
Indices: 72885390--72885572 Score: 296 Period size: 40 Copynumber: 4.6 Consensus size: 40 72885380 ATATATGTGC 72885390 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG * 72885430 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCTCG 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG * ** 72885470 AAGGTATTCGTATGGGTTATTATAACCGGGTTAAGT-CCG 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG * 72885509 AAGGCATTCCTGCGGGTTATTATAACCGGGTTAAGTCCCG 1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG * * 72885549 AAGGCATTCGTGCTGGTTGTTATA 1 AAGGCATTCGTGCGGGTTATTATA 72885573 TCCGAGCCAA Statistics Matches: 130, Mismatches: 12, Indels: 2 0.90 0.08 0.01 Matches are distributed among these distances: 39 34 0.26 40 96 0.74 ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31 Consensus pattern (40 bp): AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG Found at i:72885572 original size:79 final size:80 Alignment explanation
Indices: 72885390--72885572 Score: 289 Period size: 79 Copynumber: 2.3 Consensus size: 80 72885380 ATATATGTGC * * 72885390 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA 1 AAGGCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATAA * 72885455 CCGGGTTAAGTCTCG 66 CCGGGTTAAGTCCCG * * 72885470 AAGGTATTCGT-ATGGGTTATTATAACCGGGTTAAGT-CCGAAGGCATTCCTGCGGGTTATTATA 1 AAGGCATTCGTGCT-GGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATA 72885533 ACCGGGTTAAGTCCCG 65 ACCGGGTTAAGTCCCG * 72885549 AAGGCATTCGTGCTGGTTGTTATA 1 AAGGCATTCGTGCTGGTTATTATA 72885573 TCCGAGCCAA Statistics Matches: 93, Mismatches: 8, Indels: 5 0.88 0.08 0.05 Matches are distributed among these distances: 79 60 0.65 80 33 0.35 ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31 Consensus pattern (80 bp): AAGGCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATAA CCGGGTTAAGTCCCG Found at i:72890317 original size:26 final size:26 Alignment explanation
Indices: 72890287--72890360 Score: 76 Period size: 26 Copynumber: 2.8 Consensus size: 26 72890277 GCCAACACAC * * 72890287 CAATATCGCAACAAAGCTGCCAGTAA 1 CAATAACGCAGCAAAGCTGCCAGTAA * * * * * 72890313 TAATACCACTGCAGAGCTGCCAGTAA 1 CAATAACGCAGCAAAGCTGCCAGTAA * 72890339 CAGTAACGCAGCAAAGCTGCCA 1 CAATAACGCAGCAAAGCTGCCA 72890361 ATATCAGTAT Statistics Matches: 36, Mismatches: 12, Indels: 0 0.75 0.25 0.00 Matches are distributed among these distances: 26 36 1.00 ACGTcount: A:0.38, C:0.28, G:0.19, T:0.15 Consensus pattern (26 bp): CAATAACGCAGCAAAGCTGCCAGTAA Found at i:72890550 original size:27 final size:28 Alignment explanation
Indices: 72890520--72890580 Score: 70 Period size: 27 Copynumber: 2.2 Consensus size: 28 72890510 TTTATCCTCG 72890520 AGGGGTAAAATAGTCATTTTACC-CTTT 1 AGGGGTAAAATAGTCATTTTACCACTTT *** * 72890547 AGGGGTATTTTAGTTATTTTACCTACTTT 1 AGGGGTAAAATAGTCATTTTACC-ACTTT 72890576 AGGGG 1 AGGGG 72890581 CTAGGTACTC Statistics Matches: 28, Mismatches: 4, Indels: 2 0.82 0.12 0.06 Matches are distributed among these distances: 27 19 0.68 29 9 0.32 ACGTcount: A:0.25, C:0.11, G:0.23, T:0.41 Consensus pattern (28 bp): AGGGGTAAAATAGTCATTTTACCACTTT Found at i:72895345 original size:40 final size:39 Alignment explanation
Indices: 72895300--72895429 Score: 136 Period size: 40 Copynumber: 3.3 Consensus size: 39 72895290 CGGAATATAA 72895300 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC * * * * 72895340 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC * * * * * 72895380 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC 72895420 CCGGATATAA 1 CCGGATATAA 72895430 TTCCAGCATA Statistics Matches: 72, Mismatches: 14, Indels: 8 0.77 0.15 0.09 Matches are distributed among these distances: 38 1 0.01 40 69 0.96 41 1 0.01 42 1 0.01 ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25 Consensus pattern (39 bp): CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC Found at i:72895462 original size:39 final size:39 Alignment explanation
Indices: 72895316--72895471 Score: 131 Period size: 40 Copynumber: 3.9 Consensus size: 39 72895306 ATAACCATGT * * * 72895316 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC- 1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAT-TC-CA * * ** 72895356 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGT-AGCCACTA 1 GCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATTC-C-A 72895396 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTCCA 1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTCCA * * * * 72895435 GCATAATTGTCTTCGGGAT-TTAGCCCGGATATCATTC 1 GCACAATTGCCTTCGGG-TCTTAACCCGGATATAATTC 72895472 AATTTCCCAT Statistics Matches: 97, Mismatches: 13, Indels: 13 0.79 0.11 0.11 Matches are distributed among these distances: 38 2 0.02 39 35 0.36 40 56 0.58 41 4 0.04 ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28 Consensus pattern (39 bp): GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTCCA Found at i:72903361 original size:39 final size:38 Alignment explanation
Indices: 72903317--72903445 Score: 132 Period size: 40 Copynumber: 3.3 Consensus size: 38 72903307 CGGAATATAA 72903317 CCGGATATAACATGTGCACAAATGCCTTCGGGTCTTAGC 1 CCGGATATAACAT-TGCACAAATGCCTTCGGGTCTTAGC * ** * 72903356 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAACAT-T-GCACAAATGCCTTCGGGTCTTAGC * * * * * 72903396 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC 1 CCGGATATA-ACA-TTGCACAAATGCCTTCGGGTCTTAGC 72903436 CCGGATATAA 1 CCGGATATAA 72903446 TTTCCAGCAT Statistics Matches: 71, Mismatches: 16, Indels: 6 0.76 0.17 0.06 Matches are distributed among these distances: 39 11 0.15 40 59 0.83 42 1 0.01 ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25 Consensus pattern (38 bp): CCGGATATAACATTGCACAAATGCCTTCGGGTCTTAGC Found at i:72903423 original size:40 final size:39 Alignment explanation
Indices: 72903332--72903482 Score: 128 Period size: 40 Copynumber: 3.8 Consensus size: 39 72903322 TATAACATGT * * 72903332 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA * 72903372 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA 1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA * * ** * 72903412 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA 1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA * * 72903452 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA 1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA 72903483 TCATTCAATT Statistics Matches: 92, Mismatches: 13, Indels: 12 0.79 0.11 0.10 Matches are distributed among these distances: 38 1 0.01 39 4 0.04 40 85 0.92 41 2 0.02 ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27 Consensus pattern (39 bp): GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA Found at i:72903466 original size:80 final size:80 Alignment explanation
Indices: 72903332--72903481 Score: 198 Period size: 80 Copynumber: 1.9 Consensus size: 80 72903322 TATAACATGT * 72903332 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC 72903396 CCGGATGTAGCCACTA 65 CCGGATGTAGCCACTA * * * * * 72903412 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG 1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG 72903475 CCCGGAT 64 CCCGGAT 72903482 ATCATTCAAT Statistics Matches: 61, Mismatches: 6, Indels: 6 0.84 0.08 0.08 Matches are distributed among these distances: 79 3 0.05 80 57 0.93 81 1 0.02 ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27 Consensus pattern (80 bp): GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC CGGATGTAGCCACTA Found at i:72905976 original size:88 final size:87 Alignment explanation
Indices: 72905824--72906010 Score: 279 Period size: 88 Copynumber: 2.1 Consensus size: 87 72905814 CAAGATTGGA * * * * * 72905824 ACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGT 1 ACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGT 72905889 GTGCGAGCTGAAAATATATAGC 66 GTGCGAGCTGAAAATATATAGC * 72905911 ACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTA 1 ACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTG---ATTATATAGCACTA 72905974 AGTGTGCGAGCTGAAAATATATAGC 63 AGTGTGCGAGCTGAAAATATATAGC 72905999 ACTAAGTGTGCG 1 ACTAAGTGTGCG 72906011 GATTCACTAT Statistics Matches: 91, Mismatches: 6, Indels: 5 0.89 0.06 0.05 Matches are distributed among these distances: 85 2 0.02 86 20 0.22 87 18 0.20 88 51 0.56 ACGTcount: A:0.34, C:0.13, G:0.25, T:0.27 Consensus pattern (87 bp): ACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGT GTGCGAGCTGAAAATATATAGC Found at i:72905991 original size:59 final size:59 Alignment explanation
Indices: 72905824--72906010 Score: 281 Period size: 59 Copynumber: 3.2 Consensus size: 59 72905814 CAAGATTGGA * * * * * * * 72905824 ACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG--ATTATATAGC 1 ACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAG-CTGAAAATATATAGC 72905882 ACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATATAGC 1 ACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGC 72905940 ACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGC 1 ACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGC 72905999 ACTAAGTGTGCG 1 ACTAAGTGTGCG 72906011 GATTCACTAT Statistics Matches: 119, Mismatches: 7, Indels: 5 0.91 0.05 0.04 Matches are distributed among these distances: 56 2 0.02 57 20 0.17 58 48 0.40 59 49 0.41 ACGTcount: A:0.34, C:0.13, G:0.25, T:0.27 Consensus pattern (59 bp): ACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGC Found at i:72906022 original size:29 final size:29 Alignment explanation
Indices: 72905824--72906010 Score: 270 Period size: 29 Copynumber: 6.4 Consensus size: 29 72905814 CAAGATTGGA * * * * * 72905824 ACTAAGTGTGCGGGTTTAAAATTGTACAGC 1 ACTAAGTGTGCGAGCTGAAAA-TATATAGC * * 72905854 ACTAAGTGTGCGAGTTTG--ATTATATAGC 1 ACTAAGTGTGCGAG-CTGAAAATATATAGC 72905882 ACTAAGTGTGCGAGCTGAAAATATATAGC 1 ACTAAGTGTGCGAGCTGAAAATATATAGC 72905911 ACTAAGTGTGCGAGCTGAAAATATATAGC 1 ACTAAGTGTGCGAGCTGAAAATATATAGC 72905940 ACTAAGTGTGCGAGCTGAAAATTATATAGC 1 ACTAAGTGTGCGAGCTGAAAA-TATATAGC 72905970 ACTAAGTGTGCGAGCTGAAAATATATAGC 1 ACTAAGTGTGCGAGCTGAAAATATATAGC 72905999 ACTAAGTGTGCG 1 ACTAAGTGTGCG 72906011 GATTCACTAT Statistics Matches: 146, Mismatches: 7, Indels: 9 0.90 0.04 0.06 Matches are distributed among these distances: 27 2 0.01 28 20 0.14 29 80 0.55 30 42 0.29 31 2 0.01 ACGTcount: A:0.34, C:0.13, G:0.25, T:0.27 Consensus pattern (29 bp): ACTAAGTGTGCGAGCTGAAAATATATAGC Found at i:72909067 original size:19 final size:19 Alignment explanation
Indices: 72909043--72909080 Score: 76 Period size: 19 Copynumber: 2.0 Consensus size: 19 72909033 AGCCCTAAAT 72909043 TGACCCTAGTCGGAAAGCG 1 TGACCCTAGTCGGAAAGCG 72909062 TGACCCTAGTCGGAAAGCG 1 TGACCCTAGTCGGAAAGCG 72909081 GTTTCGGGAC Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 19 19 1.00 ACGTcount: A:0.26, C:0.26, G:0.32, T:0.16 Consensus pattern (19 bp): TGACCCTAGTCGGAAAGCG Found at i:72911145 original size:40 final size:40 Alignment explanation
Indices: 72911090--72911311 Score: 367 Period size: 40 Copynumber: 5.6 Consensus size: 40 72911080 TATTCGAATG 72911090 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT 72911130 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT * 72911170 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT * * 72911210 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT * * 72911250 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT 1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT * 72911290 ATATCC-GGCTAAATCCCGAAGG 1 ATATCCGGGCTAAGTCCCGAAGG 72911312 TACTTGGGTT Statistics Matches: 171, Mismatches: 10, Indels: 3 0.93 0.05 0.02 Matches are distributed among these distances: 39 14 0.08 40 154 0.90 41 3 0.02 ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28 Consensus pattern (40 bp): ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT Found at i:72913610 original size:114 final size:114 Alignment explanation
Indices: 72913410--72913638 Score: 449 Period size: 114 Copynumber: 2.0 Consensus size: 114 72913400 GTTGAGTTGT 72913410 CTGTAGTCTATACATAACCTCATCGACCCATCTTTTTTTTTCACAAAAAGTACCAGCACCCACGG 1 CTGTAGTCTATACATAACCTCATCGACCCATCTTTTTTTTTCACAAAAAGTACCAGCACCCACGG 72913475 AGAATAGCTCGGTCTCGCAAAACCCTTATCCGTTATTCTTGTAGCTGAG 66 AGAATAGCTCGGTCTCGCAAAACCCTTATCCGTTATTCTTGTAGCTGAG * 72913524 CTGTAGTCTATACATAACCTCATCGACCCGTCTTTTTTTTTCACAAAAAGTACCAGCACCCACGG 1 CTGTAGTCTATACATAACCTCATCGACCCATCTTTTTTTTTCACAAAAAGTACCAGCACCCACGG 72913589 AGAATAGCTCGGTCTCGCAAAACCCTTATCCGTTATTCTTGTAGCTGAG 66 AGAATAGCTCGGTCTCGCAAAACCCTTATCCGTTATTCTTGTAGCTGAG 72913638 C 1 C 72913639 CTTCAACTCT Statistics Matches: 114, Mismatches: 1, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 114 114 1.00 ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30 Consensus pattern (114 bp): CTGTAGTCTATACATAACCTCATCGACCCATCTTTTTTTTTCACAAAAAGTACCAGCACCCACGG AGAATAGCTCGGTCTCGCAAAACCCTTATCCGTTATTCTTGTAGCTGAG Found at i:72918167 original size:26 final size:26 Alignment explanation
Indices: 72918138--72918190 Score: 63 Period size: 26 Copynumber: 2.0 Consensus size: 26 72918128 TCCAACATGC * 72918138 ATTTAGGTCAATTTA-CTCTTAGGGGT 1 ATTTAGGT-AATTTATCTCCTAGGGGT * * 72918164 ATTTCGGTACTTTATCTCCTAGGGGT 1 ATTTAGGTAATTTATCTCCTAGGGGT 72918190 A 1 A 72918191 AAACTGTAAA Statistics Matches: 23, Mismatches: 3, Indels: 2 0.82 0.11 0.07 Matches are distributed among these distances: 25 5 0.22 26 18 0.78 ACGTcount: A:0.21, C:0.15, G:0.23, T:0.42 Consensus pattern (26 bp): ATTTAGGTAATTTATCTCCTAGGGGT Found at i:72919478 original size:24 final size:24 Alignment explanation
Indices: 72919444--72919544 Score: 141 Period size: 24 Copynumber: 4.2 Consensus size: 24 72919434 CCAACTCCCG * 72919444 CTCCTTGATCAGCTCCTAAATCTT 1 CTCCTTTATCAGCTCCTAAATCTT * 72919468 CTCCTTTATCAGCTCCTATATAC-T 1 CTCCTTTATCAGCTCCTAAAT-CTT * * 72919492 CTCCCTTATCAGCTCCTAAATCCT 1 CTCCTTTATCAGCTCCTAAATCTT * 72919516 CTCCCTTATCAGCTCCTAAATCTT 1 CTCCTTTATCAGCTCCTAAATCTT 72919540 CTCCT 1 CTCCT 72919545 GACAGCCTTT Statistics Matches: 69, Mismatches: 6, Indels: 4 0.87 0.08 0.05 Matches are distributed among these distances: 23 1 0.01 24 67 0.97 25 1 0.01 ACGTcount: A:0.20, C:0.38, G:0.05, T:0.38 Consensus pattern (24 bp): CTCCTTTATCAGCTCCTAAATCTT Found at i:72920083 original size:48 final size:48 Alignment explanation
Indices: 72920031--72920301 Score: 224 Period size: 48 Copynumber: 5.6 Consensus size: 48 72920021 AGTAAATTGT * * * 72920031 CGATGCCATGTCCAAGATATGGTCTTATAATGGCTCACATGTAAAGGC 1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACATGTAAAGGC * * * * * ** 72920079 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATCTCAATAC 1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACATGTAAAGGC * ** 72920127 CGATGCCATGTCCCAA-ACATGGTCTTACACTGGCTCTCATG-ATGTGGC 1 CGATGCCATGT-CCAAGACATGGTCTTACACTGGCTCACATGTA-AAGGC * * * * * * *** 72920175 CGATGCCATGTCCTAGACATAGTCTTACACTAGCGCACATATCAACAT 1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACATGTAAAGGC * ** * ** * 72920223 CGATGCCATGTCCCAGACATGGTCTTACACTCACTCTCATG-ATGTGGT 1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACATGTA-AAGGC * 72920271 CGATGCCATGTCCCAGACATGGTCTTACACT 1 CGATGCCATGTCCAAGACATGGTCTTACACT 72920302 AGTACACATA Statistics Matches: 175, Mismatches: 43, Indels: 10 0.77 0.19 0.04 Matches are distributed among these distances: 47 3 0.02 48 169 0.97 49 3 0.02 ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27 Consensus pattern (48 bp): CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACATGTAAAGGC Found at i:72920200 original size:96 final size:96 Alignment explanation
Indices: 72920031--72920314 Score: 365 Period size: 96 Copynumber: 3.0 Consensus size: 96 72920021 AGTAAATTGT * * * * ** 72920031 CGATGCCATGT-CCAAGATATGGTCTTATAATGGCTCACATG-TAAAGGCCGATGCCATGTCCCA 1 CGATGCCATGTCCCAA-ACATGGTCTTACACTGGCTCTCATGAT-GTGGCCGATGCCATGTCCCA * * * * 72920094 GACATGGTCTTACACTAGCTCCCATCTCAATAC 64 GACATGGTCTTACACTAGCGCACATATCAACAC * 72920127 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTCCTAGA 1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTCCCAGA * * 72920192 CATAGTCTTACACTAGCGCACATATCAACAT 66 CATGGTCTTACACTAGCGCACATATCAACAC * ** * 72920223 CGATGCCATGTCCCAGACATGGTCTTACACTCACTCTCATGATGTGGTCGATGCCATGTCCCAGA 1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTCCCAGA ** 72920288 CATGGTCTTACACTAGTACACATATCA 66 CATGGTCTTACACTAGCGCACATATCA 72920315 CCCAAATGTC Statistics Matches: 165, Mismatches: 21, Indels: 4 0.87 0.11 0.02 Matches are distributed among these distances: 96 160 0.97 97 5 0.03 ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26 Consensus pattern (96 bp): CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTCCCAGA CATGGTCTTACACTAGCGCACATATCAACAC Found at i:72930411 original size:18 final size:18 Alignment explanation
Indices: 72930388--72930454 Score: 80 Period size: 18 Copynumber: 3.7 Consensus size: 18 72930378 GAACTATTAT * * 72930388 TTATTCACTAACAGTCAG 1 TTATTCAGTAACAATCAG * * 72930406 TTATTCGGTAACAATCAA 1 TTATTCAGTAACAATCAG * * 72930424 TTATTCAATAATAATCAG 1 TTATTCAGTAACAATCAG 72930442 TTATTCAGTAACA 1 TTATTCAGTAACA 72930455 GTCGATATTA Statistics Matches: 39, Mismatches: 10, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 18 39 1.00 ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36 Consensus pattern (18 bp): TTATTCAGTAACAATCAG Found at i:72930702 original size:45 final size:45 Alignment explanation
Indices: 72930600--72930712 Score: 138 Period size: 45 Copynumber: 2.5 Consensus size: 45 72930590 CAGAACAAAT ** 72930600 TCGA-AACAGTAACAGTAACAGTATTCAACACACAAAGTGTTGAA 1 TCGATAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAA ** * * * 72930644 TCGATAATGGTAACAGTATCAGTATTCGACACTCAAAGTGCCGAA 1 TCGATAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAA * * 72930689 TCGGTAACAGTAACGGTAACAGTA 1 TCGATAACAGTAACAGTAACAGTA 72930713 ACAGTAGTCG Statistics Matches: 56, Mismatches: 12, Indels: 1 0.81 0.17 0.01 Matches are distributed among these distances: 44 4 0.07 45 52 0.93 ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22 Consensus pattern (45 bp): TCGATAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAA Found at i:72930707 original size:12 final size:12 Alignment explanation
Indices: 72930690--72930714 Score: 50 Period size: 12 Copynumber: 2.1 Consensus size: 12 72930680 AGTGCCGAAT 72930690 CGGTAACAGTAA 1 CGGTAACAGTAA 72930702 CGGTAACAGTAA 1 CGGTAACAGTAA 72930714 C 1 C 72930715 AGTAGTCGGC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16 Consensus pattern (12 bp): CGGTAACAGTAA Found at i:72932457 original size:19 final size:19 Alignment explanation
Indices: 72932430--72932467 Score: 51 Period size: 19 Copynumber: 2.0 Consensus size: 19 72932420 TTTCATTCTG * 72932430 TTTCTTTTCTATCTT-TTTT 1 TTTCATTTCT-TCTTCTTTT 72932449 TTTCATTTCTTCTTCTTTT 1 TTTCATTTCTTCTTCTTTT 72932468 GTTTTACTTT Statistics Matches: 17, Mismatches: 1, Indels: 2 0.85 0.05 0.10 Matches are distributed among these distances: 18 4 0.24 19 13 0.76 ACGTcount: A:0.05, C:0.18, G:0.00, T:0.76 Consensus pattern (19 bp): TTTCATTTCTTCTTCTTTT Found at i:72932623 original size:31 final size:32 Alignment explanation
Indices: 72932567--72932629 Score: 85 Period size: 31 Copynumber: 2.0 Consensus size: 32 72932557 CACACTTGTC * 72932567 ATAATTTAATATATTTATTACATAAAAATCTT 1 ATAATATAATATATTTATTACATAAAAATCTT * 72932599 ATAATATAAT-TATTTAATTA-ATAAATATCTT 1 ATAATATAATATATTT-ATTACATAAAAATCTT 72932630 TTATAAATAA Statistics Matches: 28, Mismatches: 2, Indels: 3 0.85 0.06 0.09 Matches are distributed among these distances: 31 15 0.54 32 13 0.46 ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48 Consensus pattern (32 bp): ATAATATAATATATTTATTACATAAAAATCTT Found at i:72935774 original size:17 final size:17 Alignment explanation
Indices: 72935752--72935786 Score: 70 Period size: 17 Copynumber: 2.1 Consensus size: 17 72935742 TTGAGCAATC 72935752 ACTAAAATAATATTCAG 1 ACTAAAATAATATTCAG 72935769 ACTAAAATAATATTCAG 1 ACTAAAATAATATTCAG 72935786 A 1 A 72935787 AGAATCATAT Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 18 1.00 ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29 Consensus pattern (17 bp): ACTAAAATAATATTCAG Found at i:72938879 original size:40 final size:40 Alignment explanation
Indices: 72938824--72939039 Score: 351 Period size: 40 Copynumber: 5.4 Consensus size: 40 72938814 GGATGATAAA * * * 72938824 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTATATC 1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC * * 72938864 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC 1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC * * 72938904 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC 1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC * 72938944 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATC 1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC 72938984 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC 1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC * 72939024 CGGGCTATGTCCCGAA 1 CGGGCTAAGTCCCGAA 72939040 TGTGACAGCC Statistics Matches: 166, Mismatches: 10, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 40 166 1.00 ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26 Consensus pattern (40 bp): CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC Found at i:72940588 original size:24 final size:24 Alignment explanation
Indices: 72940556--72940618 Score: 126 Period size: 24 Copynumber: 2.6 Consensus size: 24 72940546 AATCTCAAAT 72940556 GCACTATGTGTGCGATTTACTATG 1 GCACTATGTGTGCGATTTACTATG 72940580 GCACTATGTGTGCGATTTACTATG 1 GCACTATGTGTGCGATTTACTATG 72940604 GCACTATGTGTGCGA 1 GCACTATGTGTGCGA 72940619 ACATAATAAG Statistics Matches: 39, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 24 39 1.00 ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35 Consensus pattern (24 bp): GCACTATGTGTGCGATTTACTATG Found at i:72949299 original size:2 final size:2 Alignment explanation
Indices: 72949292--72949325 Score: 68 Period size: 2 Copynumber: 17.0 Consensus size: 2 72949282 GCTCTTGCAC 72949292 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 72949326 GTTTGCACAT Statistics Matches: 32, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 32 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:72950084 original size:40 final size:40 Alignment explanation
Indices: 72950029--72950285 Score: 349 Period size: 40 Copynumber: 6.5 Consensus size: 40 72950019 CGGATGATAA * * * 72950029 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * * * 72950069 CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTATTACAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * * 72950109 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * 72950149 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * 72950189 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT * * * 72950229 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGATATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT * * 72950268 CC-GGTTAAATCCCGAAGG 1 CCGGGCTAAGTCCCGAAGG 72950286 TACTTGGCTT Statistics Matches: 197, Mismatches: 19, Indels: 4 0.90 0.09 0.02 Matches are distributed among these distances: 38 15 0.08 39 14 0.07 40 168 0.85 ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT Found at i:72952876 original size:40 final size:38 Alignment explanation
Indices: 72952817--72953009 Score: 224 Period size: 39 Copynumber: 4.9 Consensus size: 38 72952807 TCGTTCAAAC * * * * 72952817 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT 1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT * * 72952857 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT 1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT * * 72952896 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATT 1 -GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT * * * 72952935 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATTT 1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA-AT * * 72952974 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA 1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA 72953010 TTCATACACA Statistics Matches: 138, Mismatches: 13, Indels: 5 0.88 0.08 0.03 Matches are distributed among these distances: 38 33 0.24 39 66 0.48 40 39 0.28 ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24 Consensus pattern (38 bp): GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT Found at i:72952968 original size:77 final size:78 Alignment explanation
Indices: 72952816--72953011 Score: 252 Period size: 77 Copynumber: 2.5 Consensus size: 78 72952806 CTCGTTCAAA * * * * * * 72952816 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT 1 CGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCAC-ATTGCCTTCGGGACTTAACCCGGATAT 72952881 CACAACTCGCACAAT 64 CACAACTCGCACAAT * 72952896 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGG-CTTAGCCCGGATATCA 1 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGGACTTAACCCGGATATCA * * 72952960 CAATTCGCACATT 66 CAACTCGCACAAT * * 72952973 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT 1 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATT 72953012 CATACACATC Statistics Matches: 104, Mismatches: 11, Indels: 5 0.87 0.09 0.04 Matches are distributed among these distances: 77 60 0.58 78 13 0.12 79 21 0.20 80 10 0.10 ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24 Consensus pattern (78 bp): CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGGACTTAACCCGGATATCA CAACTCGCACAAT Found at i:72953010 original size:39 final size:39 Alignment explanation
Indices: 72952856--72953011 Score: 235 Period size: 39 Copynumber: 4.0 Consensus size: 39 72952846 CCCGCACAAA * * * 72952856 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT 1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACATT * * 72952896 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACA-T 1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT 72952934 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT 1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT 72952973 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT 1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT 72953012 CATACACATC Statistics Matches: 107, Mismatches: 6, Indels: 7 0.89 0.05 0.06 Matches are distributed among these distances: 38 34 0.32 39 64 0.60 40 9 0.08 ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26 Consensus pattern (39 bp): TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT Found at i:72955246 original size:18 final size:18 Alignment explanation
Indices: 72955223--72955306 Score: 105 Period size: 18 Copynumber: 4.6 Consensus size: 18 72955213 GAACGATTAT * 72955223 TTATTCAGTAACAATCAG 1 TTATTCAGTAACAATCAA * 72955241 TTATTCGGTAACAATCAA 1 TTATTCAGTAACAATCAA * * * 72955259 TTATTCAATAATAATCAG 1 TTATTCAGTAACAATCAA * 72955277 TTATTCAGTAACAATTAAA 1 TTATTCAGTAACAA-TCAA 72955296 TTATTCAGTAA 1 TTATTCAGTAA 72955307 TAGTTAATCT Statistics Matches: 55, Mismatches: 10, Indels: 1 0.83 0.15 0.02 Matches are distributed among these distances: 18 42 0.76 19 13 0.24 ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37 Consensus pattern (18 bp): TTATTCAGTAACAATCAA Found at i:72955556 original size:45 final size:45 Alignment explanation
Indices: 72955501--72955610 Score: 148 Period size: 45 Copynumber: 2.4 Consensus size: 45 72955491 GCTGAAACAG * * 72955501 TAACAGTAACAGTAGCAGTATTCAACACACAAAGTGCTGAATCGA 1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA * * * * * 72955546 TAACGGTAACAGTATCAGTATTCGACACACAAAGTGCCGAATTGG 1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA * 72955591 TAACAGTAACGGTAACAGTA 1 TAACAGTAACAGTAACAGTA 72955611 ACAGTAGTCA Statistics Matches: 56, Mismatches: 9, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 45 56 1.00 ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21 Consensus pattern (45 bp): TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA Found at i:72955601 original size:51 final size:48 Alignment explanation
Indices: 72955496--72955633 Score: 142 Period size: 45 Copynumber: 2.9 Consensus size: 48 72955486 TCGAAGCTGA * * * 72955496 AACAGTAACAGTAACAGTAGCAGTATTCAACACACAAAGTGCTGAATCG 1 AACAGTAACGGTAACAGTAACAGTATTC-ACACACAAAGTGCCGAATCG * * 72955545 ---A-TAACGGTAACAGTATCAGTATTCGACACACAAAGTGCCGAATTGG 1 AACAGTAACGGTAACAGTAACAGTATTC-ACACACAAAGTGCCGAA-TCG * 72955591 TAACAGTAACGGTAACAGTAACAGTAGTCA-ACACATAAGTGCC 1 -AACAGTAACGGTAACAGTAACAGTATTCACACACA-AAGTGCC 72955634 TGATCAGTAA Statistics Matches: 75, Mismatches: 7, Indels: 13 0.79 0.07 0.14 Matches are distributed among these distances: 45 37 0.49 46 3 0.04 49 5 0.07 50 9 0.12 51 21 0.28 ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20 Consensus pattern (48 bp): AACAGTAACGGTAACAGTAACAGTATTCACACACAAAGTGCCGAATCG Found at i:72957060 original size:27 final size:26 Alignment explanation
Indices: 72957004--72957060 Score: 60 Period size: 26 Copynumber: 2.2 Consensus size: 26 72956994 CAACCTTAAC * * * 72957004 CCTAGGGGTATATCAGTAATTTTGCT 1 CCTAGGGGTAAATCAGTAATTTTCCA ** 72957030 CCTAGGGGTAAATTTGTAAATTTTCCA 1 CCTAGGGGTAAATCAGT-AATTTTCCA 72957057 CCTA 1 CCTA 72957061 TAAAGGTATT Statistics Matches: 25, Mismatches: 5, Indels: 1 0.81 0.16 0.03 Matches are distributed among these distances: 26 14 0.56 27 11 0.44 ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37 Consensus pattern (26 bp): CCTAGGGGTAAATCAGTAATTTTCCA Found at i:72960394 original size:38 final size:39 Alignment explanation
Indices: 72960256--72960473 Score: 349 Period size: 39 Copynumber: 5.7 Consensus size: 39 72960246 TGTGTGAGAT * 72960256 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA 1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA 72960295 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA 1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA * 72960334 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA 1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA 72960373 TTATATCC-GGCTAAGTCCCGAAGGCATTCGTG-TGATA 1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA * * 72960410 TTATATCTGGGCTAAGT-CCGAA-GCATTCGTGCT-ATG 1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA * 72960446 TTATATCC-GGCTAAGTTCCGAAGGCATT 1 TTATATCCGGGCTAAGTCCCGAAGGCATT 72960474 TGGGTTGGAA Statistics Matches: 169, Mismatches: 6, Indels: 10 0.91 0.03 0.05 Matches are distributed among these distances: 35 8 0.05 36 23 0.14 37 22 0.13 38 32 0.19 39 84 0.50 ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30 Consensus pattern (39 bp): TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA Found at i:72965485 original size:46 final size:46 Alignment explanation
Indices: 72965432--72965607 Score: 198 Period size: 46 Copynumber: 3.8 Consensus size: 46 72965422 TATTTGGGCA 72965432 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG * * * 72965478 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTTG-GCA 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C--GAGCG * ** 72965525 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG * * * 72965571 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG 1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG 72965608 GCGGGTTGCA Statistics Matches: 110, Mismatches: 11, Indels: 18 0.79 0.08 0.13 Matches are distributed among these distances: 43 4 0.04 45 3 0.03 46 65 0.59 47 31 0.28 48 3 0.03 50 4 0.04 ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30 Consensus pattern (46 bp): TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG Found at i:72965587 original size:93 final size:93 Alignment explanation
Indices: 72965428--72965600 Score: 301 Period size: 93 Copynumber: 1.9 Consensus size: 93 72965418 GGGATATTTG * * 72965428 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG 72965493 TTGAGTCCGAGTTCGTGAGATGTAACTT 66 TTGAGTCCGAGTTCGTGAGATGTAACTT * * * 72965521 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG 1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG 72965586 TTGAGTCCGAGTTCG 66 TTGAGTCCGAGTTCG 72965601 CTTATGGGCG Statistics Matches: 75, Mismatches: 5, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 93 75 1.00 ACGTcount: A:0.19, C:0.21, G:0.31, T:0.28 Consensus pattern (93 bp): GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG TTGAGTCCGAGTTCGTGAGATGTAACTT Found at i:72969918 original size:2 final size:2 Alignment explanation
Indices: 72969906--72969937 Score: 55 Period size: 2 Copynumber: 15.5 Consensus size: 2 72969896 TGTACCTTAA 72969906 AT AT AT GAT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT A 72969938 CGTATTAAAT Statistics Matches: 29, Mismatches: 0, Indels: 2 0.94 0.00 0.06 Matches are distributed among these distances: 2 27 0.93 3 2 0.07 ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47 Consensus pattern (2 bp): AT Found at i:72970472 original size:39 final size:39 Alignment explanation
Indices: 72970427--72970650 Score: 333 Period size: 39 Copynumber: 5.7 Consensus size: 39 72970417 TATGTGAGAT * * 72970427 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTA 1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA * * 72970466 TTATATCTGGGCTAAGTCCCGAAGGCATTCATGCTGATA 1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA * 72970505 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTTG-TA 1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC-TGATA * * 72970544 TTATATCCAGGCTAAGTCTCGAAGGCATTCGTGCTGATA 1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA * * 72970583 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG 1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA * * 72970622 TTATATCCGGGCTAAGTTCTGAAGGCATT 1 TTATATCCGGGCTAAGTCCCGAAGGCATT 72970651 TGGGTTGGAA Statistics Matches: 166, Mismatches: 17, Indels: 4 0.89 0.09 0.02 Matches are distributed among these distances: 38 2 0.01 39 162 0.98 40 2 0.01 ACGTcount: A:0.24, C:0.21, G:0.25, T:0.31 Consensus pattern (39 bp): TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA Found at i:72970526 original size:78 final size:78 Alignment explanation
Indices: 72970395--72970650 Score: 338 Period size: 78 Copynumber: 3.3 Consensus size: 78 72970385 AGGATTTTAA * * * * 72970395 CCGGGCTAAGACCCGCAGGCCTT-ATG-TGAGATTTATATCC-AGGCTAAGTCCCGAAGGCATTC 1 CCGGGCTAAGTCCCGAAGGCATTCATGCTGATA-TTATATCCGA-GCTAAGTCCCGAAGGCATTC 72970457 GTGCTGGTATTATAT 64 GTGCTGGTATTATAT * 72970472 CTGGGCTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGT 1 CCGGGCTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGT * 72970537 GCTTGTATTATAT 66 GCTGGTATTATAT * * * * * 72970550 CCAGGCTAAGTCTCGAAGGCATTCGTGCTGATATTATATTCGGGCTAAGTCCCGAAGGCATTCGT 1 CCGGGCTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGT * * 72970615 GCTGATGTTATAT 66 GCTGGTATTATAT * * 72970628 CCGGGCTAAGTTCTGAAGGCATT 1 CCGGGCTAAGTCCCGAAGGCATT 72970651 TGGGTTGGAA Statistics Matches: 157, Mismatches: 19, Indels: 5 0.87 0.10 0.03 Matches are distributed among these distances: 77 19 0.12 78 133 0.85 79 5 0.03 ACGTcount: A:0.23, C:0.22, G:0.25, T:0.29 Consensus pattern (78 bp): CCGGGCTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGT GCTGGTATTATAT Found at i:72970636 original size:117 final size:117 Alignment explanation
Indices: 72970427--72970650 Score: 369 Period size: 117 Copynumber: 1.9 Consensus size: 117 72970417 TATGTGAGAT * 72970427 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCTGGGCTAAGTCCCGAAGGC 1 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCTGGGCTAAGTCCCGAAGGC 72970492 ATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTTGTA 66 ATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTTGTA * 72970544 TTATATCCAGGCTAAGTCTCGAAGGCATTCGTGCTGATATTATAT-TCGGGCTAAGTCCCGAAGG 1 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCT-GGGCTAAGTCCCGAAGG * * * * * 72970608 CATTCGTGCTGATGTTATATCCGGGCTAAGTTCTGAAGGCATT 65 CATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATT 72970651 TGGGTTGGAA Statistics Matches: 99, Mismatches: 7, Indels: 2 0.92 0.06 0.02 Matches are distributed among these distances: 116 1 0.01 117 98 0.99 ACGTcount: A:0.24, C:0.21, G:0.25, T:0.31 Consensus pattern (117 bp): TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCTGGGCTAAGTCCCGAAGGC ATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTTGTA Found at i:72984546 original size:40 final size:40 Alignment explanation
Indices: 72984492--72984715 Score: 265 Period size: 40 Copynumber: 5.6 Consensus size: 40 72984482 CTTGCACAAG * * * 72984492 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGAT 1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT * 72984532 GCCTTCGGGACTTAGCCCGGATATAGTCATTAGCACAAAT 1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT * * 72984572 GCCTTC-GGTCTTAGCCCGGATATAATCACTAGCACAAAT 1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT * * * * * 72984611 GCCTTTGAGTCTTAGCCCGGATATAG-CAACTCGCACGAAT 1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT * * * * 72984651 GCCTTC-GGATCTTAGTCTGGTTATAGTCACCTAGCACAAAA 1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT 72984692 GCCTTCGGGACTTAGCCCGGATAT 1 GCCTTCGGGACTTAGCCCGGATAT 72984716 CATTCGAATA Statistics Matches: 154, Mismatches: 24, Indels: 11 0.81 0.13 0.06 Matches are distributed among these distances: 39 37 0.24 40 88 0.57 41 26 0.17 42 3 0.02 ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26 Consensus pattern (40 bp): GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT Found at i:72984601 original size:79 final size:79 Alignment explanation
Indices: 72984456--72984715 Score: 292 Period size: 79 Copynumber: 3.3 Consensus size: 79 72984446 CTCAAGTAAT * * * * * * * 72984456 CTTCAGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGT 1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTC-GGTCTTAGCCCGGATATAGT * 72984519 CACTAGCACAGATGC 65 CACTAGCACAAATGC * * 72984534 CTTCGGGACTTAGCCCGGATATAGTC-ATTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAAT 1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAGT 72984598 CACTAGCACAAATGC 65 CACTAGCACAAATGC * * * * * * * * 72984613 CTTTGAGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCTGGTTATAGT 1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGG-TCTTAGCCCGGATATAGT * 72984678 CACCTAGCACAAAAGC 65 CA-CTAGCACAAATGC 72984694 CTTCGGGACTTAGCCCGGATAT 1 CTTCGGGACTTAGCCCGGATAT 72984716 CATTCGAATA Statistics Matches: 153, Mismatches: 23, Indels: 9 0.83 0.12 0.05 Matches are distributed among these distances: 78 12 0.08 79 85 0.56 80 25 0.16 81 31 0.20 ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26 Consensus pattern (79 bp): CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAGTC ACTAGCACAAATGC Found at i:72984679 original size:119 final size:120 Alignment explanation
Indices: 72984456--72984715 Score: 300 Period size: 119 Copynumber: 2.2 Consensus size: 120 72984446 CTCAAGTAAT * * * * * 72984456 CTTCAGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTC 1 CTTCGGGACTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGAGTCTTAGCCCGGATATAGTC * * 72984520 ACTAGCACAGATGCCTTCGGGACTTAGCCCGGATATAGTCA-TTAGCACAAATGC 66 ACTAGCACAGATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC * * * 72984574 CTTC-GGTCTTAGCCCGGATATAA-TCACTAGCACAAATGCCTTTGAGTCTTAGCCCGGATATAG 1 CTTCGGGACTTAGCCCGGATATAACT-ACTAGCAC-AAGGCCTTCGAGTCTTAGCCCGGATATAG * * * * 72984637 -CAACTCGCAC-GAATGCCTTC-GGATCTTAGTCTGGTTATAGTCACCTAGCACAAAAGC 64 TC-ACTAGCACAG-ATGCCTTCGGGA-CTTAGCCCGGATATAGTCACCTAGCACAAAAGC 72984694 CTTCGGGACTTAGCCCGGATAT 1 CTTCGGGACTTAGCCCGGATAT 72984716 CATTCGAATA Statistics Matches: 120, Mismatches: 14, Indels: 13 0.82 0.10 0.09 Matches are distributed among these distances: 117 7 0.06 118 26 0.22 119 56 0.47 120 15 0.12 121 16 0.13 ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26 Consensus pattern (120 bp): CTTCGGGACTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGAGTCTTAGCCCGGATATAGTC ACTAGCACAGATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC Found at i:72992895 original size:37 final size:36 Alignment explanation
Indices: 72992833--72992907 Score: 123 Period size: 37 Copynumber: 2.1 Consensus size: 36 72992823 CTTTAGCTCA * 72992833 GACAAATCTCCACACGAAGTTATCGGGTCTTACCCG 1 GACAAATCTCCACACGAAGTCATCGGGTCTTACCCG * 72992869 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG 1 GACA-AATCTCCACACGAAGTCATCGGGTCTTACCCG 72992906 GA 1 GA 72992908 ATACATTTCC Statistics Matches: 36, Mismatches: 2, Indels: 1 0.92 0.05 0.03 Matches are distributed among these distances: 36 4 0.11 37 32 0.89 ACGTcount: A:0.27, C:0.31, G:0.20, T:0.23 Consensus pattern (36 bp): GACAAATCTCCACACGAAGTCATCGGGTCTTACCCG Found at i:72993013 original size:48 final size:48 Alignment explanation
Indices: 72992952--72993528 Score: 906 Period size: 48 Copynumber: 12.0 Consensus size: 48 72992942 TGTTACAACA * * 72992952 TTCACATTAGCCATTTGGCTTTACCACATATACATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * * 72993000 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72993048 TTCACATTCA-CCATTCGGCTTTACCATATATACATATCTCATATATAT 1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * ** 72993096 TTCACATTAGCCATTTGGCTTTACCACATATACATATCACACGTATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72993144 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * 72993192 TTCACATTCGCTATTCGGC-TTACCACATATACATATCTCATATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72993239 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * * * 72993287 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72993335 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72993383 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * * * 72993431 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72993479 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATGTAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT 72993527 TT 1 TT 72993529 ATCTTGTACA Statistics Matches: 481, Mismatches: 45, Indels: 6 0.90 0.08 0.01 Matches are distributed among these distances: 47 45 0.09 48 436 0.91 ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37 Consensus pattern (48 bp): TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT Found at i:72997135 original size:40 final size:40 Alignment explanation
Indices: 72997103--72997453 Score: 533 Period size: 40 Copynumber: 8.8 Consensus size: 40 72997093 CCAGCATGAT * * * 72997103 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA 1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA * * 72997143 TGCTCTTCGGG-TTTAGCCCGGATACATCACTAGCACGAA 1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA * * 72997182 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA 1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA * * * 72997222 TGCTCTTCGGGACTTAGTCCGAATACATCACTAGCACGAA 1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA * 72997262 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA 1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA * * 72997302 TGCTCCTCGGGACTTAACCCGGATATATCACTAGCACGAA 1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA * * * * 72997342 TACTCCTCGGGACTTAACTCGGATATATCACTAGCACGAA 1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA 72997382 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA 1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA * 72997422 TGCTCTTCGGGACTTAGCCCAGATATATCACT 1 TGCTCTTCGGGACTTAGCCCGGATATATCACT 72997454 CTCAATTCTC Statistics Matches: 290, Mismatches: 20, Indels: 2 0.93 0.06 0.01 Matches are distributed among these distances: 39 34 0.12 40 256 0.88 ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24 Consensus pattern (40 bp): TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA Found at i:72998780 original size:37 final size:37 Alignment explanation
Indices: 72998721--72998829 Score: 182 Period size: 37 Copynumber: 2.9 Consensus size: 37 72998711 AGCTCAGACG * * * 72998721 AAATCTCCACACGAAGTTATCGGGTCTTACACGGACA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA 72998758 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA * 72998795 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA 1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA 72998830 ATACATTTCC Statistics Matches: 68, Mismatches: 4, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 37 68 1.00 ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23 Consensus pattern (37 bp): AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA Found at i:72998945 original size:48 final size:48 Alignment explanation
Indices: 72998874--72999595 Score: 1111 Period size: 48 Copynumber: 15.0 Consensus size: 48 72998864 TGTTACAACA * * * 72998874 TTCACATTAGCCATTTGGCTTTACCACATATAAATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * * * 72998922 TTCACATTCGTCATTCGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * 72998970 TTCACATTTGCCATTCAGCTTTACCACATATACATATCTCATATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * 72999018 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72999066 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * * * * 72999114 TTCACATTCGCCATTCGGCCTTACCACATATACATATCACACATACAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72999162 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * * * 72999210 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72999258 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72999306 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * * * 72999354 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72999402 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * 72999450 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * * * 72999498 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT * * * 72999546 TTCACATTAGCCATTCGGCTTTACGATATATACATATCTCATATGTAT 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT 72999594 TT 1 TT 72999596 ATCTTGTACA Statistics Matches: 611, Mismatches: 63, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 48 611 1.00 ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36 Consensus pattern (48 bp): TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT Found at i:72999066 original size:144 final size:144 Alignment explanation
Indices: 72998874--72999595 Score: 1246 Period size: 144 Copynumber: 5.0 Consensus size: 144 72998864 TGTTACAACA * * * * 72998874 TTCACATTAGCCATTTGGCTTTACCACATATAAATATCTCATACATATTTCACATTCGTCATTCG 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG * * 72998939 GCTTTACCACATATACATATCACACATATATTTCACATTTGCCATTCAGCTTTACCACATATACA 66 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA 72999004 TATCTCATATATAT 131 TATCTCATATATAT * * * * * 72999018 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG * * * * 72999083 GCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCCTTACCACATATACA 66 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA * * * 72999148 TATCACACATACAT 131 TATCTCATATATAT 72999162 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG 72999227 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA 66 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA 72999292 TATCTCATATATAT 131 TATCTCATATATAT 72999306 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG 72999371 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA 66 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA 72999436 TATCTCATATATAT 131 TATCTCATATATAT 72999450 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG 1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG * * * 72999515 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACGATATATACA 66 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA * 72999580 TATCTCATATGTAT 131 TATCTCATATATAT 72999594 TT 1 TT 72999596 ATCTTGTACA Statistics Matches: 546, Mismatches: 32, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 144 546 1.00 ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36 Consensus pattern (144 bp): TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA TATCTCATATATAT Found at i:73002888 original size:40 final size:40 Alignment explanation
Indices: 73002798--73003058 Score: 271 Period size: 40 Copynumber: 6.5 Consensus size: 40 73002788 CTCAAGTAAT * * * * 73002798 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC 1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC * * * 73002836 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGC 1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC * 73002876 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC 1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC * * * * * 73002916 CTTCGGGTCTTAGCCTGAATATAATCGCTAGCACAAATGC 1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC * * * 73002956 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC 1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC * * * 73002996 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC 1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC * 73003037 CTTCAGGACTTAGCCCGGATAT 1 CTTCGGGACTTAGCCCGGATAT 73003059 CATTCGAATA Statistics Matches: 186, Mismatches: 29, Indels: 13 0.82 0.13 0.06 Matches are distributed among these distances: 38 11 0.06 39 18 0.10 40 127 0.68 41 27 0.15 42 3 0.02 ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25 Consensus pattern (40 bp): CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC Found at i:73002929 original size:80 final size:80 Alignment explanation
Indices: 73002798--73003058 Score: 303 Period size: 80 Copynumber: 3.3 Consensus size: 80 73002788 CTCAAGTAAT * * * * * * 73002798 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGT 1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT * 73002861 CACTAGCACAGATGC 66 CACTAGCACAAATGC * * * * 73002876 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTCTTAGCCTGAATATAA 1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG * 73002940 TCGCTAGCACAAATGC 65 TCACTAGCACAAATGC * * * * * * 73002956 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT 1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT * 73003021 CACCTAGCACAAAAGC 66 CA-CTAGCACAAATGC * 73003037 CTTCAGGACTTAGCCCGGATAT 1 CTTCGGGACTTAGCCCGGATAT 73003059 CATTCGAATA Statistics Matches: 153, Mismatches: 25, Indels: 7 0.83 0.14 0.04 Matches are distributed among these distances: 78 12 0.08 79 16 0.10 80 93 0.61 81 32 0.21 ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25 Consensus pattern (80 bp): CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT CACTAGCACAAATGC Found at i:73012179 original size:13 final size:13 Alignment explanation
Indices: 73012116--73012179 Score: 65 Period size: 13 Copynumber: 4.9 Consensus size: 13 73012106 AACACTTAAA * 73012116 TTTTCCAAAGCAC 1 TTTTCAAAAGCAC * * 73012129 TTCTCAAAAGTAC 1 TTTTCAAAAGCAC * * 73012142 TTCTCAAAAGTAC 1 TTTTCAAAAGCAC * * 73012155 TTTTCCACAGCAC 1 TTTTCAAAAGCAC 73012168 TTTTCAAAAGCA 1 TTTTCAAAAGCA 73012180 ATGAAGAACT Statistics Matches: 42, Mismatches: 9, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 13 42 1.00 ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31 Consensus pattern (13 bp): TTTTCAAAAGCAC Found at i:73014309 original size:40 final size:39 Alignment explanation
Indices: 73014264--73014470 Score: 218 Period size: 40 Copynumber: 5.2 Consensus size: 39 73014254 CGGAATACAA * 73014264 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC * * * 73014304 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC 1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC * * * 73014344 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC *** * 73014384 CCGGATATGGTCACTAGCAC-AATGCCTTCGGGTCTTAAC 1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC ** * * * 73014423 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC 1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC 73014463 CCGGATAT 1 CCGGATAT 73014471 CATTCAATTG Statistics Matches: 142, Mismatches: 23, Indels: 4 0.84 0.14 0.02 Matches are distributed among these distances: 39 35 0.25 40 107 0.75 ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26 Consensus pattern (39 bp): CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC Found at i:73014461 original size:79 final size:81 Alignment explanation
Indices: 73014264--73014470 Score: 242 Period size: 79 Copynumber: 2.6 Consensus size: 81 73014254 CGGAATACAA * * * 73014264 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGCCCGGATA-GAACGACTTGCACAAA 1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGCCCGGATATGAACGACTAGCACAAA * 73014327 TGCCTTCGGGTATTAGC 65 TGCCTTCGGGTATTAAC * * * ** 73014344 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATGGTC-ACTAGCAC-AAT 1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGAACGACTAGCACAAAT * 73014407 GCCTTCGGGTCTTAAC 66 GCCTTCGGGTATTAAC ** * * * 73014423 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT 1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT 73014471 CATTCAATTG Statistics Matches: 109, Mismatches: 16, Indels: 5 0.84 0.12 0.04 Matches are distributed among these distances: 79 57 0.52 80 50 0.46 81 2 0.02 ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26 Consensus pattern (81 bp): CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGAACGACTAGCACAAAT GCCTTCGGGTATTAAC Found at i:73022330 original size:40 final size:39 Alignment explanation
Indices: 73022285--73022491 Score: 202 Period size: 40 Copynumber: 5.2 Consensus size: 39 73022275 CGGAATACAA * 73022285 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC * * * 73022325 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC 1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC * * * 73022365 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC 1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC * ** * 73022405 CCGGATGT-GTCACTAGCAC-AATGGCCTTCGGGTCTTAAC 1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC ** * * * 73022444 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC 1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC 73022484 CCGGATAT 1 CCGGATAT 73022492 CATTCAATTG Statistics Matches: 141, Mismatches: 22, Indels: 8 0.82 0.13 0.05 Matches are distributed among these distances: 38 4 0.03 39 28 0.20 40 106 0.75 41 3 0.02 ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26 Consensus pattern (39 bp): CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC Found at i:73022474 original size:79 final size:80 Alignment explanation
Indices: 73022285--73022490 Score: 222 Period size: 79 Copynumber: 2.6 Consensus size: 80 73022275 CGGAATACAA * * * 73022285 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT 1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAAT * 73022349 GCCTTCGGGTATTAGC 65 GCCTTCGGGTATTAAC * * * ** 73022365 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTGTC-ACTAGCAC-AAT 1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AACGACTAGCACAAAT * 73022427 GGCCTTCGGGTCTTAAC 65 -GCCTTCGGGTATTAAC ** * * * 73022444 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA 1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA 73022491 TCATTCAATT Statistics Matches: 106, Mismatches: 16, Indels: 8 0.82 0.12 0.06 Matches are distributed among these distances: 78 3 0.03 79 60 0.57 80 43 0.41 ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25 Consensus pattern (80 bp): CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG CCTTCGGGTATTAAC Found at i:73027812 original size:24 final size:24 Alignment explanation
Indices: 73027747--73027815 Score: 63 Period size: 24 Copynumber: 2.9 Consensus size: 24 73027737 GAGCTGATGG * * 73027747 ACAGTAAACTC-TATTGAGTTG-AA 1 ACAGTAAGCTCTTA-TGAGCTGAAA * * 73027770 ACAGCAAGCT-TTGACGAGCTGAAA 1 ACAGTAAGCTCTT-ATGAGCTGAAA 73027794 ACAGTAAGCTCTTATGAGCTGA 1 ACAGTAAGCTCTTATGAGCTGA 73027816 TATATCGGTA Statistics Matches: 36, Mismatches: 6, Indels: 7 0.73 0.12 0.14 Matches are distributed among these distances: 23 14 0.39 24 20 0.56 25 2 0.06 ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25 Consensus pattern (24 bp): ACAGTAAGCTCTTATGAGCTGAAA Found at i:73035923 original size:40 final size:40 Alignment explanation
Indices: 73035822--73036042 Score: 241 Period size: 40 Copynumber: 5.5 Consensus size: 40 73035812 TATTCGAATG * * * 73035822 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT * * * 73035863 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT * * * * 73035903 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT * * * * * 73035943 ATATCCGGGATAAGTCCCGAAGGCATTTATGCTAGTGACC 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT * ** 73035983 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT 73036022 ATATCC-GGCTAA-ATCCCGAAG 1 ATATCCGGGCTAAGA-CCCGAAG 73036043 ATACTTGGGT Statistics Matches: 151, Mismatches: 28, Indels: 5 0.82 0.15 0.03 Matches are distributed among these distances: 37 1 0.01 38 13 0.09 39 15 0.10 40 94 0.62 41 28 0.19 ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT Found at i:73043992 original size:40 final size:40 Alignment explanation
Indices: 73043891--73044111 Score: 250 Period size: 40 Copynumber: 5.5 Consensus size: 40 73043881 TATTCGAATG * * * 73043891 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT * * * 73043932 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT * * * * 73043972 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT * * * * 73044012 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT * ** 73044052 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT 1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT 73044091 ATATCC-GGCTAA-ATCCCGAAG 1 ATATCCGGGCTAAGA-CCCGAAG 73044112 ATACTTGGGT Statistics Matches: 153, Mismatches: 26, Indels: 5 0.83 0.14 0.03 Matches are distributed among these distances: 37 1 0.01 38 13 0.08 39 15 0.10 40 96 0.63 41 28 0.18 ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24 Consensus pattern (40 bp): ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT Found at i:73047922 original size:40 final size:39 Alignment explanation
Indices: 73047878--73048059 Score: 247 Period size: 39 Copynumber: 4.6 Consensus size: 39 73047868 GTTCAAAACA * * ** * * 73047878 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG 1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG * * 73047918 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG 1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG * 73047958 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG 1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG * * 73047997 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG 1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG 73048036 CCTTCGGGCTTAGCCCGGATATCA 1 CCTTCGGGCTTAGCCCGGATATCA 73048060 CTCGAACATT Statistics Matches: 128, Mismatches: 14, Indels: 1 0.90 0.10 0.01 Matches are distributed among these distances: 39 88 0.69 40 40 0.31 ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24 Consensus pattern (39 bp): CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG Found at i:73047989 original size:39 final size:39 Alignment explanation
Indices: 73047908--73048060 Score: 252 Period size: 39 Copynumber: 3.9 Consensus size: 39 73047898 TATGGTAACC * * 73047908 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT 1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT * * 73047948 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT * 73047987 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT 73048026 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC 73048061 TCGAACATTC Statistics Matches: 106, Mismatches: 7, Indels: 1 0.93 0.06 0.01 Matches are distributed among these distances: 39 89 0.84 40 17 0.16 ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24 Consensus pattern (39 bp): CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT Found at i:73055993 original size:40 final size:39 Alignment explanation
Indices: 73055935--73056116 Score: 247 Period size: 39 Copynumber: 4.6 Consensus size: 39 73055925 CGTTCAAACA * * ** * * 73055935 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG 1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG * * 73055975 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG 1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG * 73056015 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG 1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG * * 73056054 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG 1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG 73056093 CCTTCGGGCTTAGCCCGGATATCA 1 CCTTCGGGCTTAGCCCGGATATCA 73056117 CTCGAACATT Statistics Matches: 128, Mismatches: 14, Indels: 1 0.90 0.10 0.01 Matches are distributed among these distances: 39 88 0.69 40 40 0.31 ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24 Consensus pattern (39 bp): CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG Found at i:73056046 original size:39 final size:39 Alignment explanation
Indices: 73055965--73056117 Score: 252 Period size: 39 Copynumber: 3.9 Consensus size: 39 73055955 TATGGTAACC * * 73055965 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT 1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT * * 73056005 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT * 73056044 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT 73056083 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC 1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC 73056118 TCGAACATTC Statistics Matches: 106, Mismatches: 7, Indels: 1 0.93 0.06 0.01 Matches are distributed among these distances: 39 89 0.84 40 17 0.16 ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24 Consensus pattern (39 bp): CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT Found at i:73060213 original size:21 final size:20 Alignment explanation
Indices: 73060189--73060227 Score: 69 Period size: 21 Copynumber: 1.9 Consensus size: 20 73060179 GAGTATTTTG 73060189 ATGTTTGATGATAGATTATGA 1 ATGTTTGATGATAG-TTATGA 73060210 ATGTTTGATGATAGTTAT 1 ATGTTTGATGATAGTTAT 73060228 ACAAGTTTTC Statistics Matches: 18, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 20 4 0.22 21 14 0.78 ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46 Consensus pattern (20 bp): ATGTTTGATGATAGTTATGA Found at i:73060235 original size:20 final size:21 Alignment explanation
Indices: 73060191--73060235 Score: 58 Period size: 21 Copynumber: 2.2 Consensus size: 21 73060181 GTATTTTGAT * 73060191 GTTTGATGATAGATTATGAAT 1 GTTTGATGATAGATTATGAAA 73060212 GTTTGATGATAG-TTAT-ACAA 1 GTTTGATGATAGATTATGA-AA 73060232 GTTT 1 GTTT 73060236 TCTTAAGTGA Statistics Matches: 22, Mismatches: 1, Indels: 3 0.85 0.04 0.12 Matches are distributed among these distances: 19 1 0.05 20 9 0.41 21 12 0.55 ACGTcount: A:0.31, C:0.02, G:0.22, T:0.44 Consensus pattern (21 bp): GTTTGATGATAGATTATGAAA Done.