Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 238 of 425
Found at i:72750333 original size:9 final size:9
Alignment explanation
Indices: 72750321--72750397 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
72750311 TTTGATAAAC
72750321 ATGATATGT
1 ATGATATGT
*
72750330 ATGATATGCAC
1 ATGATATG--T
72750341 ATGATATGT
1 ATGATATGT
*
72750350 ATGATATGCAC
1 ATGATATG--T
*
72750361 ATGACATGT
1 ATGATATGT
*
72750370 ATGATATGCAC
1 ATGATATG--T
72750381 ATGATATGT
1 ATGATATGT
72750390 ATGATATG
1 ATGATATG
72750398 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:72750346 original size:11 final size:11
Alignment explanation
Indices: 72750330--72750401 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
72750320 CATGATATGT
72750330 ATGATATGCAC
1 ATGATATGCAC
*
72750341 ATGATATG--T
1 ATGATATGCAC
72750350 ATGATATGCAC
1 ATGATATGCAC
* *
72750361 ATGACATG--T
1 ATGATATGCAC
72750370 ATGATATGCAC
1 ATGATATGCAC
*
72750381 ATGATATG--T
1 ATGATATGCAC
72750390 ATGATATGCAC
1 ATGATATGCAC
72750401 A
1 A
72750402 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:72750409 original size:20 final size:20
Alignment explanation
Indices: 72750319--72750401 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
72750309 ATTTTGATAA
72750319 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
72750339 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
72750359 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
72750379 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
72750399 ACA
1 ACA
72750402 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:72750512 original size:24 final size:24
Alignment explanation
Indices: 72750456--72750645 Score: 269
Period size: 24 Copynumber: 8.0 Consensus size: 24
72750446 GAGGAAGTGA
*
72750456 AAAAGGGCTTATGCCCTAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
72750479 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72750503 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
72750527 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
72750551 AAAAGGGCTTACGCCCCAATTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
72750574 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
*
72750598 AAAAGGGCTTTTGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
*
72750622 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72750646 ATGATAAAGT
Statistics
Matches: 150, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
23 41 0.27
24 98 0.65
25 11 0.07
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:72750525 original size:47 final size:47
Alignment explanation
Indices: 72750456--72750620 Score: 267
Period size: 47 Copynumber: 3.5 Consensus size: 47
72750446 GAGGAAGTGA
*
72750456 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
72750503 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* * *
72750551 AAAAGGGCTTACGCCCCAATTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
72750598 AAAAGGGCTTTTGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
72750621 CAAAAGAGGC
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
47 64 0.59
48 44 0.41
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:72750579 original size:71 final size:72
Alignment explanation
Indices: 72750455--72750631 Score: 268
Period size: 71 Copynumber: 2.5 Consensus size: 72
72750445 GGAGGAAGTG
* * * *
72750455 AAAAAGGGCTTATGCCCTAGTTAT-TAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCC
72750519 CAGTTAT
66 CAGTTAT
* *
72750526 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAATTAT-TAAAGGGCTTATGCCC
1 AAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCC
72750590 CAGTTAT
66 CAGTTAT
*
72750597 AAAAAGGGCTTTTGCCCCAGTTATCAAAAGAGGCT
1 AAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCT
72750632 AGGCCTCCAG
Statistics
Matches: 96, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 72 0.75
72 24 0.25
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (72 bp):
AAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAATTATCAAAAGGGCTTATGCCC
CAGTTAT
Found at i:72750877 original size:31 final size:31
Alignment explanation
Indices: 72750842--72750902 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
72750832 TTACCGTAAA
*
72750842 GGCTTCGGCCCAGTAATATGAAATTTGAAAG
1 GGCTTCGGCCCAGTAATATGAAATATGAAAG
**
72750873 GGCTTCGGCCCAGTGTTATGAAATATGAAA
1 GGCTTCGGCCCAGTAATATGAAATATGAAA
72750903 TATGAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (31 bp):
GGCTTCGGCCCAGTAATATGAAATATGAAAG
Found at i:72750901 original size:7 final size:7
Alignment explanation
Indices: 72750889--72750916 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
72750879 GGCCCAGTGT
72750889 TATGAAA
1 TATGAAA
72750896 TATGAAA
1 TATGAAA
72750903 TATGAAA
1 TATGAAA
72750910 TATGAAA
1 TATGAAA
72750917 AGGGCTATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:72754720 original size:22 final size:22
Alignment explanation
Indices: 72754694--72754738 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
72754684 TATGCTAGAT
72754694 TATAATATATGCCTCCTAGACA
1 TATAATATATGCCTCCTAGACA
* *
72754716 TATAATATATTCCTTCTAGACA
1 TATAATATATGCCTCCTAGACA
72754738 T
1 T
72754739 GTTAATGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.38
Consensus pattern (22 bp):
TATAATATATGCCTCCTAGACA
Found at i:72760160 original size:46 final size:47
Alignment explanation
Indices: 72760054--72760169 Score: 135
Period size: 50 Copynumber: 2.4 Consensus size: 47
72760044 TGTCTTCGAC
** * *
72760054 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATATAAT
* * *
72760104 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
72760150 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
72760170 TCTATCCTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 28 0.48
50 30 0.52
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:72764941 original size:40 final size:40
Alignment explanation
Indices: 72764882--72765088 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 40
72764872 CAATTGAATG
* * * *
72764882 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
72764922 ATATCCGGGTTAAGACCCGAAGGCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72764961 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72765001 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
72765041 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
72765081 ATATCCGG
1 ATATCCGG
72765089 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
39 33 0.24
40 107 0.76
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:72765061 original size:80 final size:79
Alignment explanation
Indices: 72764882--72765088 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 79
72764872 CAATTGAATG
* * ** * * *
72764882 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
*
72764947 TTGTGCTAGTGACC
66 TTGTGCAAGTGACC
* * * *
72764961 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
**
72765026 TTTGTGCAAGTCGTTC
66 -TTGTGCAAGT-GACC
* *
72765042 -TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
72765089 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
79 54 0.50
80 52 0.48
81 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCA
TTGTGCAAGTGACC
Found at i:72772947 original size:40 final size:40
Alignment explanation
Indices: 72772888--72773094 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
72772878 CAATTGAATG
* * * *
72772888 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
72772928 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGA-C
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
72772967 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
72773007 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
72773047 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
72773087 ATATCCGG
1 ATATCCGG
72773095 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
38 2 0.01
39 29 0.21
40 107 0.76
41 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:72773025 original size:79 final size:80
Alignment explanation
Indices: 72772890--72773094 Score: 236
Period size: 79 Copynumber: 2.6 Consensus size: 80
72772880 ATTGAATGAT
* * ** * * *
72772890 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
72772954 TTGTGCTAGT-G-ACAC
65 TTGTGCAAGTCGTAC-C
* * *
72772969 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
* *
72773034 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGTACC
* *
72773049 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
72773095 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
78 2 0.02
79 60 0.56
80 44 0.41
81 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGTACC
Found at i:72782294 original size:78 final size:82
Alignment explanation
Indices: 72782159--72782342 Score: 256
Period size: 78 Copynumber: 2.3 Consensus size: 82
72782149 TCGAATGATG
*
72782159 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
72782223 TGTGCGAGTTACTA-AA
66 TGTGCGAGTTACTATAA
* * **
72782239 TCCGGG-TAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
72782300 TTGTGCGAGTTACTATAA
65 TTGTGCGAGTTACTATAA
*
72782318 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72782343 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
77 1 0.01
78 55 0.59
79 18 0.19
80 19 0.20
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATAA
Found at i:72782349 original size:40 final size:40
Alignment explanation
Indices: 72782159--72782342 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
72782149 TCGAATGATG
* * *
72782159 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
72782199 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
72782239 TCCGGG-TAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72782277 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72782318 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72782343 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 7, Indels: 10
0.89 0.05 0.07
Matches are distributed among these distances:
38 34 0.26
39 9 0.07
40 79 0.60
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72789392 original size:47 final size:47
Alignment explanation
Indices: 72789339--72789821 Score: 777
Period size: 47 Copynumber: 10.3 Consensus size: 47
72789329 ACAAGATATG
* * *
72789339 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72789386 TATATGTGATAAGGCAGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
72789433 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
72789480 TATATGTGATAAGGCAGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
72789527 TATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72789574 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
72789621 TATATGTGATAGGGTCGAGTGGCCAACGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72789668 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * **
72789715 TATATGTGATAGGGTCGAGCGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72789762 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
72789809 TAAATGTGATAAG
1 TATATGTGATAAG
72789822 TCCCGAAGGG
Statistics
Matches: 399, Mismatches: 37, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 399 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:72789415 original size:22 final size:22
Alignment explanation
Indices: 72789389--72789511 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
72789379 AAGTGTATAT
72789389 ATGTGATAAGGCAGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
***
72789411 ATGTGATGAATGTG-A-AAGTGTATA
1 ATGTGAT-AA-G-GCAGAA-TGGCCA
*
72789435 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
***
72789458 ATGTGATGAATGTG-A-AAGTGTATA
1 ATGTGAT-AA-G-GCAGAA-TGGCCA
72789482 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
72789505 ATGTGAT
1 ATGTGAT
72789512 GAATGTGAAA
Statistics
Matches: 73, Mismatches: 14, Indels: 28
0.63 0.12 0.24
Matches are distributed among these distances:
22 23 0.32
23 17 0.23
24 17 0.23
25 16 0.22
ACGTcount: A:0.35, C:0.08, G:0.30, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:72791725 original size:27 final size:28
Alignment explanation
Indices: 72791668--72791737 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
72791658 AAATTTGTAC
**
72791668 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
72791696 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
72791723 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72791738 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:72791746 original size:27 final size:27
Alignment explanation
Indices: 72791668--72791749 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
72791658 AAATTTGTAC
* *
72791668 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
72791696 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
72791723 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
72791750 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:72798874 original size:27 final size:28
Alignment explanation
Indices: 72798817--72798886 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
72798807 AAATTTGTAC
**
72798817 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
72798845 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
72798872 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72798887 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:72798895 original size:27 final size:27
Alignment explanation
Indices: 72798817--72798898 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
72798807 AAATTTGTAC
* *
72798817 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
72798845 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
72798872 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
72798899 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:72804726 original size:40 final size:40
Alignment explanation
Indices: 72804487--72804712 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
72804477 TCGAATGATG
* * ** *
72804487 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
72804527 TCCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
**
72804567 TCTAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
72804607 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
72804647 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
72804688 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
72804713 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 156 0.93
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72816045 original size:24 final size:24
Alignment explanation
Indices: 72816009--72816068 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
72815999 TTTTTTGAAA
*
72816009 GTTTCGACAATGCTCCGAAACCCT
1 GTTTCGACGATGCTCCGAAACCCT
*
72816033 GTTTCGACGATGCTCTGAAACCCT
1 GTTTCGACGATGCTCCGAAACCCT
72816057 GTTTCGACGATG
1 GTTTCGACGATG
72816069 GATATGGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (24 bp):
GTTTCGACGATGCTCCGAAACCCT
Found at i:72818644 original size:39 final size:39
Alignment explanation
Indices: 72818521--72818704 Score: 185
Period size: 40 Copynumber: 4.7 Consensus size: 39
72818511 ATAGTGATTC
* * * *
72818521 GCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCA
1 GCACAAATGCCTTCGGGACTTAACCC-GTTTTAGTAACT-A
* * *
72818562 -CACGAATGCCTTCGGGACTTAACCCAGTTTTGGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCC-GTTTTAGTAACTA
*
72818601 GCACAAATGCCTTCGGGACTTAACCCGTTTTGGTAACTA
1 GCACAAATGCCTTCGGGACTTAACCCGTTTTAGTAACTA
* * * *
72818640 GCACAAATGCCTTCGGGAATTGACCCG-ATTAGTCACTTA
1 GCACAAATGCCTTCGGGACTTAACCCGTTTTAGTAAC-TA
* *
72818679 GCACAAAAGCCTTC-GGACTTAGCCCG
1 GCACAAATGCCTTCGGGACTTAACCCG
72818705 GACACCATTC
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 15 0.12
39 52 0.43
40 55 0.45
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
GCACAAATGCCTTCGGGACTTAACCCGTTTTAGTAACTA
Found at i:72826615 original size:40 final size:39
Alignment explanation
Indices: 72826571--72826786 Score: 208
Period size: 40 Copynumber: 5.5 Consensus size: 39
72826561 GCTCGATTGT
* * *
72826571 CTTCGGGACATT-GCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAGCCCGGTT-TAGTAACTCGCACAAATGC
* *
72826611 CTTCGGGAATTAGCCCGGATTTAGTAACT--CACGAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* *
72826649 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* *
72826689 CTTCGGGACTTAACCCGGTTTTGGTAACT-GCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
72826728 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
72826769 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
72826787 ACACCATTCG
Statistics
Matches: 151, Mismatches: 17, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
38 32 0.21
39 34 0.23
40 58 0.38
41 26 0.17
42 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:72826666 original size:78 final size:77
Alignment explanation
Indices: 72826571--72826787 Score: 238
Period size: 78 Copynumber: 2.7 Consensus size: 77
72826561 GCTCGATTGT
* * * *
72826571 CTTCGGGACATTGCCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGCCCGGATTTAGT
1 CTTCGGGAC-TTACCCGGTT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
*
72826636 AACT-CACGAATGC
64 AACTGCACAAATGC
* * * * *
72826649 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGT
1 CTTCGGGACTT-ACCCGG-TTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
72826714 AACTGCACAAATGC
64 AACTGCACAAATGC
* * * *
72826728 CTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CTTCGGGACTT-ACCCGG-TTTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCGGA
72826788 CACCATTCGA
Statistics
Matches: 115, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
77 2 0.02
78 54 0.47
79 31 0.27
80 28 0.24
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.27
Consensus pattern (77 bp):
CTTCGGGACTTACCCGGTTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAA
CTGCACAAATGC
Found at i:72826733 original size:39 final size:40
Alignment explanation
Indices: 72826601--72826787 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
72826591 ATAGTGATTC
* * *
72826601 GCACAATTGCCTTCGGGAATTAGCCCGGATTTAGTAACT-
1 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTA
* * * *
72826640 -CACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTC
1 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTA
* *
72826679 GCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACT-
1 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTA
* * *
72826718 GCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTA
1 GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TA
* *
72826759 GCACAAAAGCCTTCGGGACTTAGCCCGGA
1 GCACAAATGCCTTCGGGACTTAACCCGGA
72826788 CACCATTCGA
Statistics
Matches: 128, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
38 32 0.25
39 33 0.26
40 38 0.30
41 25 0.20
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTA
Found at i:72831578 original size:36 final size:36
Alignment explanation
Indices: 72831522--72831593 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
72831512 GCCACGGAAG
72831522 AAAGTTCACCAGTTTAGCAGTAAAGGAAAACTAACT
1 AAAGTTCACCAGTTTAGCAGTAAAGGAAAACTAACT
* *
72831558 AAAGTTCACC-GATTTGGCAGTAAAGGCAAACTAACT
1 AAAGTTCACCAG-TTTAGCAGTAAAGGAAAACTAACT
72831594 CTATGGTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 1 0.03
36 32 0.97
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (36 bp):
AAAGTTCACCAGTTTAGCAGTAAAGGAAAACTAACT
Found at i:72838770 original size:39 final size:39
Alignment explanation
Indices: 72838686--72838838 Score: 225
Period size: 39 Copynumber: 3.9 Consensus size: 39
72838676 TATGGTAACC
** * *
72838686 CGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
72838726 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72838765 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
72838804 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
72838839 TCGAACATTC
Statistics
Matches: 103, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 88 0.85
40 15 0.15
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:72838811 original size:78 final size:79
Alignment explanation
Indices: 72838655--72838837 Score: 278
Period size: 78 Copynumber: 2.3 Consensus size: 79
72838645 TCGTTCAAAC
* * **
72838655 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
1 GCCTTCGGG-CTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATC
72838720 ACAATTTGCACAATT
65 ACAATTTGCACAATT
* ** *
72838735 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
72838799 CAATTTGCACAATT
66 CAATTTGCACAATT
72838813 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
72838838 CTCGAACATT
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 54 0.57
79 32 0.34
80 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCA
CAATTTGCACAATT
Found at i:72841013 original size:8 final size:8
Alignment explanation
Indices: 72841000--72841029 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
72840990 TCAGAAAATC
72841000 CCGAAAAG
1 CCGAAAAG
*
72841008 CCGAAATG
1 CCGAAAAG
72841016 CCGAAAAG
1 CCGAAAAG
72841024 CCGAAA
1 CCGAAA
72841030 GTTTGGCTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.47, C:0.27, G:0.23, T:0.03
Consensus pattern (8 bp):
CCGAAAAG
Found at i:72841019 original size:16 final size:16
Alignment explanation
Indices: 72840995--72841029 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
72840985 GTAGATCAGA
72840995 AAATCCCGAAAAGCCG
1 AAATCCCGAAAAGCCG
*
72841011 AAATGCCGAAAAGCCG
1 AAATCCCGAAAAGCCG
72841027 AAA
1 AAA
72841030 GTTTGGCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.26, G:0.20, T:0.06
Consensus pattern (16 bp):
AAATCCCGAAAAGCCG
Found at i:72841276 original size:29 final size:29
Alignment explanation
Indices: 72841225--72841336 Score: 122
Period size: 28 Copynumber: 4.0 Consensus size: 29
72841215 CATGATTGTA
*
72841225 AATGTGATTTGGGCCTAGT-GGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * *
72841253 AATGTGATTTTGGCCTAATGGGCCACATA
1 AATGTGATTTGGGCCTAATGGGCCATATG
*
72841282 AATGTGA-ATGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATG
* * * *
72841310 AAAGAGA-TTGGGCCTAGTGGGCTATAT
1 AATGTGATTTGGGCCTAATGGGCCATAT
72841337 ATATATGTAT
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
28 56 0.80
29 14 0.20
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATG
Found at i:72841331 original size:56 final size:57
Alignment explanation
Indices: 72841223--72841331 Score: 141
Period size: 57 Copynumber: 1.9 Consensus size: 57
72841213 AGCATGATTG
* * * * *
72841223 TAAATGTGATTTGGGCCTAGTGGCCATATGAATGTGATTTTGGCCTAATGGGCCACA
1 TAAATGTGATATGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
*
72841280 TAAATGTGA-ATGGGCCTAATGGGCCATATGAAAGAGA-TTGGGCCTAGTGGGC
1 TAAATGTGATATGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAATGGGC
72841332 TATATATATA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
56 22 0.49
57 23 0.51
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.28
Consensus pattern (57 bp):
TAAATGTGATATGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
Found at i:72841656 original size:27 final size:26
Alignment explanation
Indices: 72841621--72841673 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
72841611 AACTCGTAAT
* * *
72841621 AAAGGAAAATTACTGAAATGCCCCTA
1 AAAGGAAAATGACTAAAATACCCCTA
72841647 AAAGTGAAAATGACTAAAATACCCCTA
1 AAAG-GAAAATGACTAAAATACCCCTA
72841674 TGCGATGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.49, C:0.19, G:0.13, T:0.19
Consensus pattern (26 bp):
AAAGGAAAATGACTAAAATACCCCTA
Found at i:72849153 original size:20 final size:20
Alignment explanation
Indices: 72849130--72849191 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
72849120 GCAAATTATA
*
72849130 CCCTGATTACACTTATGTGC
1 CCCTGATTGCACTTATGTGC
* *
72849150 CCCTGTTTGTACTT-TGGTGC
1 CCCTGATTGCACTTAT-GTGC
*
72849170 CCCTGATTGCACTTACGTGC
1 CCCTGATTGCACTTATGTGC
72849190 CC
1 CC
72849192 TTGTTTGTAC
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
19 1 0.03
20 33 0.97
ACGTcount: A:0.13, C:0.32, G:0.19, T:0.35
Consensus pattern (20 bp):
CCCTGATTGCACTTATGTGC
Found at i:72849175 original size:40 final size:40
Alignment explanation
Indices: 72849130--72849207 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
72849120 GCAAATTATA
*
72849130 CCCTGATTACACTTATGTGCCCCTGTTTGTACTTTGGTGC
1 CCCTGATTACACTTACGTGCCCCTGTTTGTACTTTGGTGC
* *
72849170 CCCTGATTGCACTTACGTGCCCTTGTTTGTACTTTGGT
1 CCCTGATTACACTTACGTGCCCCTGTTTGTACTTTGGT
72849208 ACTGCTAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.12, C:0.27, G:0.21, T:0.41
Consensus pattern (40 bp):
CCCTGATTACACTTACGTGCCCCTGTTTGTACTTTGGTGC
Found at i:72849203 original size:20 final size:20
Alignment explanation
Indices: 72849140--72849203 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 20
72849130 CCCTGATTAC
*
72849140 ACTTATGTGCCCCTGTTTGT
1 ACTTACGTGCCCCTGTTTGT
** * *
72849160 ACTTTGGTGCCCCTGATTGC
1 ACTTACGTGCCCCTGTTTGT
*
72849180 ACTTACGTGCCCTTGTTTGT
1 ACTTACGTGCCCCTGTTTGT
72849200 ACTT
1 ACTT
72849204 TGGTACTGCT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.11, C:0.27, G:0.20, T:0.42
Consensus pattern (20 bp):
ACTTACGTGCCCCTGTTTGT
Found at i:72849221 original size:40 final size:40
Alignment explanation
Indices: 72849139--72849221 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 40
72849129 ACCCTGATTA
* * * *
72849139 CACTTATGTGCCCCTGTTTGTACTTTGGTGCCCCTGATTG
1 CACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTAAATG
* **
72849179 CACTTACGTGCCCTTGTTTGTACTTTGGTACTGCTAAATG
1 CACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTAAATG
72849219 CAC
1 CAC
72849222 ATCGGCTCCC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.39
Consensus pattern (40 bp):
CACTTACGTGCCCCTGTTTGTACTTTGGTACCCCTAAATG
Found at i:72855583 original size:40 final size:40
Alignment explanation
Indices: 72855406--72855587 Score: 280
Period size: 40 Copynumber: 4.6 Consensus size: 40
72855396 AAACCAAGTA
* * *
72855406 CCTTCGGGAATTAGCCGGA-TATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGATTATAG-TAACTCGCACAAATG
*
72855445 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCC-GATTATAGTAACTCGCACAAATG
*
72855485 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
72855525 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
72855565 CCTTCGGGACTTAGCCCGATTAT
1 CCTTCGGGACTTAGCCCGATTAT
72855588 CATCCGAATA
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 17 0.13
40 116 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
Found at i:72859445 original size:40 final size:40
Alignment explanation
Indices: 72859390--72859557 Score: 187
Period size: 40 Copynumber: 4.2 Consensus size: 40
72859380 TGAATGATAC
* *
72859390 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
72859430 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
72859470 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
72859510 CCGGGTTAAGGCCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
72859550 CC-GGCTAA
1 CCGGGCTAA
72859558 ATTCTGAAGA
Statistics
Matches: 105, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
39 6 0.06
40 97 0.92
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:72861496 original size:26 final size:24
Alignment explanation
Indices: 72861440--72861496 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 24
72861430 CAGGACACAT
*
72861440 AGCATAATAACCAAAATGAACTTA
1 AGCATAATAAACAAAATGAACTTA
72861464 AGTCATAATCAAACAAAACTGAA-TTCA
1 AG-CATAAT-AAACAAAA-TGAACTT-A
72861491 AGCATA
1 AGCATA
72861497 GAAGTTAGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
24 2 0.07
25 6 0.21
26 13 0.46
27 7 0.25
ACGTcount: A:0.53, C:0.18, G:0.09, T:0.21
Consensus pattern (24 bp):
AGCATAATAAACAAAATGAACTTA
Found at i:72867679 original size:12 final size:14
Alignment explanation
Indices: 72867664--72867695 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
72867654 GTGAGAACAC
72867664 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
72867676 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
72867690 ATGTGT
1 ATGTGT
72867696 TTAAGATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:72867780 original size:50 final size:50
Alignment explanation
Indices: 72867661--72867956 Score: 294
Period size: 50 Copynumber: 5.9 Consensus size: 50
72867651 ATTGTGAGAA
* * *** *
72867661 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG--TTAGGT
* * *
72867713 CACGTGTGTAGTGCTAAGTGCAGCCTACTATGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* ** * * *
72867763 TACATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCA-ACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGA-TAGTT-AGGT
* * *
72867814 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * * *
72867864 CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACC-GA-AGTGTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGT-TAGGT
* *
72867913 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
72867957 CTTCAGTTAC
Statistics
Matches: 199, Mismatches: 37, Indels: 17
0.79 0.15 0.07
Matches are distributed among these distances:
48 2 0.01
49 40 0.20
50 79 0.40
51 42 0.21
52 36 0.18
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
Found at i:72867842 original size:101 final size:99
Alignment explanation
Indices: 72867712--72867956 Score: 301
Period size: 101 Copynumber: 2.5 Consensus size: 99
72867702 TGGTTTTAGG
* * *
72867712 TCACGTGTGTAGTGCTAAGTGCAGCCTACTATGTGTACCAGATAGTTAGGTTACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
* *
72867777 TAAGTGCAGGCTACTATACGTACCCAACAACTTCAA
66 TAAGTACAGGCTACTACACGTACCCAA-AACTT-AA
* * *
72867813 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
** * *** **
72867878 TAAGTACAGGCTACTACGTGTACCGAAGTGTTGG
66 TAAGTACAGGCTACTACACGTACCCAAAACTTAA
* * *
72867912 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
72867957 CTTCAGTTAC
Statistics
Matches: 123, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
99 40 0.33
100 2 0.02
101 81 0.66
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (99 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
TAAGTACAGGCTACTACACGTACCCAAAACTTAA
Found at i:72867988 original size:150 final size:152
Alignment explanation
Indices: 72867668--72867950 Score: 392
Period size: 150 Copynumber: 1.9 Consensus size: 152
72867658 GAACACATGT
* * * *
72867668 GTAGTACTATGTGTAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTGCTAAGTG
1 GTAGTACTATGTGCAGGCTACTATGTGTATAAGATGG-TTTAGGTCACGTGTGTAGTACTAAGTA
* *
72867733 CAGCCTACTATGTGTACCAGATAGTTAGGTTACATGTGTAGTACTAAGTGCAGGCTACTATACGT
65 CAGCCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACGT
** *
72867798 ACCCAACAACTTCAATCACGTGT
130 ACCCAACAACTTCAATCACAAGG
* *
72867821 GTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGG-TTAGGTCACGTGTGTAGTACTAAGTAC
1 GTAGTACTATGTGCAGGCTACTATGTGTATAAGATGGTTTAGGTCACGTGTGTAGTACTAAGTAC
* * * *
72867885 AGGCTACTACGTGTACC-GA-AGTGTTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGT
66 AGCCTACTACGTGTACCAGATAGT-TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACGT
72867948 ACC
130 ACC
72867951 AGATAGCTTC
Statistics
Matches: 117, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
149 3 0.03
150 41 0.35
151 40 0.34
153 33 0.28
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (152 bp):
GTAGTACTATGTGCAGGCTACTATGTGTATAAGATGGTTTAGGTCACGTGTGTAGTACTAAGTAC
AGCCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATACGTA
CCCAACAACTTCAATCACAAGG
Found at i:72872476 original size:41 final size:40
Alignment explanation
Indices: 72872425--72872562 Score: 140
Period size: 41 Copynumber: 3.4 Consensus size: 40
72872415 TATTATAATC
* *
72872425 TCGCACACTAAGTGCCTTTCATAGCCAAAGTTATCTCAACT
1 TCGCACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAA-T
*
72872466 TCGCACACTAAGTACCATATAT-ATAGCCGAAGCTAT-TCAAT
1 TCGCACACTAAGTGCC-T-T-TCATAGCCGAAGCTATCTCAAT
* *
72872507 TCGCACACTGAGTG-CTTTACATAGCCGAAGCTATCTCGAAA
1 TCGCACACTAAGTGCCTTT-CATAGCCGAAGCTATCTC-AAT
*
72872548 T-GCACACAAAGTGCC
1 TCGCACACTAAGTGCC
72872563 ATACGTAGTC
Statistics
Matches: 81, Mismatches: 8, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 15 0.19
40 13 0.16
41 32 0.40
42 5 0.06
43 13 0.16
44 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (40 bp):
TCGCACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAAT
Found at i:72872536 original size:39 final size:39
Alignment explanation
Indices: 72872387--72872540 Score: 130
Period size: 41 Copynumber: 3.8 Consensus size: 39
72872377 TATATCTCGT
** * * *
72872387 ACACTAAGTGCTAAAGCTTAGCTGAAGCTATTATAATCTCGC
1 ACACTAAGTGCTTTA-CATAGCCGAAGCTATT-CAAT-TCGC
* *
72872429 ACACTAAGTGCCTTT-CATAGCCAAAGTTATCTCAACTTCGC
1 ACACTAAGTG-CTTTACATAGCCGAAGCTAT-TCAA-TTCGC
* * *
72872470 ACACTAAGTACCATATATATAGCCGAAGCTATTCAATTCGC
1 ACACTAAGT-GC-TTTACATAGCCGAAGCTATTCAATTCGC
*
72872511 ACACTGAGTGCTTTACATAGCCGAAGCTAT
1 ACACTAAGTGCTTTACATAGCCGAAGCTAT
72872541 CTCGAAATGC
Statistics
Matches: 90, Mismatches: 16, Indels: 15
0.74 0.13 0.12
Matches are distributed among these distances:
39 17 0.19
40 1 0.01
41 40 0.44
42 18 0.20
43 14 0.16
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (39 bp):
ACACTAAGTGCTTTACATAGCCGAAGCTATTCAATTCGC
Found at i:72877211 original size:79 final size:80
Alignment explanation
Indices: 72877028--72877250 Score: 394
Period size: 79 Copynumber: 2.8 Consensus size: 80
72877018 ATATATGTGC
*
72877028 AAGGCATTCGTGCGGGTTATTATAACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
72877093 CCGGGTTAAGTCCCG
66 CCGGGTTAAGTCCCG
72877108 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGT-CGGGTTATTATAA
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
72877172 CCGGGTTAAGTCCCG
66 CCGGGTTAAGTCCCG
* * * *
72877187 AAGGCATTCCTGTGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATA
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATA
72877251 TCCGAGCCAA
Statistics
Matches: 137, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
79 77 0.56
80 60 0.44
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (80 bp):
AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
CCGGGTTAAGTCCCG
Found at i:72877268 original size:40 final size:40
Alignment explanation
Indices: 72877028--72877250 Score: 394
Period size: 40 Copynumber: 5.6 Consensus size: 40
72877018 ATATATGTGC
*
72877028 AAGGCATTCGTGCGGGTTATTATAACTGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
72877068 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
72877108 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
72877148 AAGGCATTCGT-CGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
* *
72877187 AAGGCATTCCTGTGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
* *
72877227 AAGGCATTCGTGCTGGTTGTTATA
1 AAGGCATTCGTGCGGGTTATTATA
72877251 TCCGAGCCAA
Statistics
Matches: 175, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 38 0.22
40 137 0.78
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (40 bp):
AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
Found at i:72877268 original size:119 final size:120
Alignment explanation
Indices: 72877028--72877268 Score: 376
Period size: 119 Copynumber: 2.0 Consensus size: 120
72877018 ATATATGTGC
* *
72877028 AAGGCATTCGTGCGGGTTATTATAACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATAA
* ** *
72877093 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
66 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGAGCCAAATCCCG
*
72877148 AAGGCATTCGT-CGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGTGGGTTATTATAA
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATAA
* * * *
72877212 CCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTGTTATATCCGAGCCAAATTCCG
66 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGAGCCAAATCCCG
72877267 AA
1 AA
72877269 AGTATTTATG
Statistics
Matches: 110, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
119 99 0.90
120 11 0.10
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (120 bp):
AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATAA
CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGAGCCAAATCCCG
Found at i:72885436 original size:40 final size:40
Alignment explanation
Indices: 72885390--72885572 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
72885380 ATATATGTGC
72885390 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
*
72885430 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCTCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
* **
72885470 AAGGTATTCGTATGGGTTATTATAACCGGGTTAAGT-CCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
*
72885509 AAGGCATTCCTGCGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
* *
72885549 AAGGCATTCGTGCTGGTTGTTATA
1 AAGGCATTCGTGCGGGTTATTATA
72885573 TCCGAGCCAA
Statistics
Matches: 130, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 34 0.26
40 96 0.74
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (40 bp):
AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCG
Found at i:72885572 original size:79 final size:80
Alignment explanation
Indices: 72885390--72885572 Score: 289
Period size: 79 Copynumber: 2.3 Consensus size: 80
72885380 ATATATGTGC
* *
72885390 AAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
1 AAGGCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATAA
*
72885455 CCGGGTTAAGTCTCG
66 CCGGGTTAAGTCCCG
* *
72885470 AAGGTATTCGT-ATGGGTTATTATAACCGGGTTAAGT-CCGAAGGCATTCCTGCGGGTTATTATA
1 AAGGCATTCGTGCT-GGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATA
72885533 ACCGGGTTAAGTCCCG
65 ACCGGGTTAAGTCCCG
*
72885549 AAGGCATTCGTGCTGGTTGTTATA
1 AAGGCATTCGTGCTGGTTATTATA
72885573 TCCGAGCCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
79 60 0.65
80 33 0.35
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (80 bp):
AAGGCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCCTGCGGGTTATTATAA
CCGGGTTAAGTCCCG
Found at i:72890317 original size:26 final size:26
Alignment explanation
Indices: 72890287--72890360 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
72890277 GCCAACACAC
* *
72890287 CAATATCGCAACAAAGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
* * * * *
72890313 TAATACCACTGCAGAGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
*
72890339 CAGTAACGCAGCAAAGCTGCCA
1 CAATAACGCAGCAAAGCTGCCA
72890361 ATATCAGTAT
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.15
Consensus pattern (26 bp):
CAATAACGCAGCAAAGCTGCCAGTAA
Found at i:72890550 original size:27 final size:28
Alignment explanation
Indices: 72890520--72890580 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
72890510 TTTATCCTCG
72890520 AGGGGTAAAATAGTCATTTTACC-CTTT
1 AGGGGTAAAATAGTCATTTTACCACTTT
*** *
72890547 AGGGGTATTTTAGTTATTTTACCTACTTT
1 AGGGGTAAAATAGTCATTTTACC-ACTTT
72890576 AGGGG
1 AGGGG
72890581 CTAGGTACTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 19 0.68
29 9 0.32
ACGTcount: A:0.25, C:0.11, G:0.23, T:0.41
Consensus pattern (28 bp):
AGGGGTAAAATAGTCATTTTACCACTTT
Found at i:72895345 original size:40 final size:39
Alignment explanation
Indices: 72895300--72895429 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
72895290 CGGAATATAA
72895300 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
72895340 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72895380 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
72895420 CCGGATATAA
1 CCGGATATAA
72895430 TTCCAGCATA
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72895462 original size:39 final size:39
Alignment explanation
Indices: 72895316--72895471 Score: 131
Period size: 40 Copynumber: 3.9 Consensus size: 39
72895306 ATAACCATGT
* * *
72895316 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAAT-TC-CA
* * **
72895356 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGT-AGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATTC-C-A
72895396 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTCCA
1 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTCCA
* * * *
72895435 GCATAATTGTCTTCGGGAT-TTAGCCCGGATATCATTC
1 GCACAATTGCCTTCGGG-TCTTAACCCGGATATAATTC
72895472 AATTTCCCAT
Statistics
Matches: 97, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 35 0.36
40 56 0.58
41 4 0.04
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTCCA
Found at i:72903361 original size:39 final size:38
Alignment explanation
Indices: 72903317--72903445 Score: 132
Period size: 40 Copynumber: 3.3 Consensus size: 38
72903307 CGGAATATAA
72903317 CCGGATATAACATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAT-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
72903356 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAT-T-GCACAAATGCCTTCGGGTCTTAGC
* * * * *
72903396 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACA-TTGCACAAATGCCTTCGGGTCTTAGC
72903436 CCGGATATAA
1 CCGGATATAA
72903446 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 16, Indels: 6
0.76 0.17 0.06
Matches are distributed among these distances:
39 11 0.15
40 59 0.83
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (38 bp):
CCGGATATAACATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72903423 original size:40 final size:39
Alignment explanation
Indices: 72903332--72903482 Score: 128
Period size: 40 Copynumber: 3.8 Consensus size: 39
72903322 TATAACATGT
* *
72903332 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
72903372 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
72903412 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
72903452 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAA-TGCCTTCGGG-TCTTAGCCCGGATA
72903483 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 85 0.92
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:72903466 original size:80 final size:80
Alignment explanation
Indices: 72903332--72903481 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
72903322 TATAACATGT
*
72903332 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
72903396 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
72903412 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
72903475 CCCGGAT
64 CCCGGAT
72903482 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:72905976 original size:88 final size:87
Alignment explanation
Indices: 72905824--72906010 Score: 279
Period size: 88 Copynumber: 2.1 Consensus size: 87
72905814 CAAGATTGGA
* * * * *
72905824 ACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGT
1 ACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGT
72905889 GTGCGAGCTGAAAATATATAGC
66 GTGCGAGCTGAAAATATATAGC
*
72905911 ACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTA
1 ACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTG---ATTATATAGCACTA
72905974 AGTGTGCGAGCTGAAAATATATAGC
63 AGTGTGCGAGCTGAAAATATATAGC
72905999 ACTAAGTGTGCG
1 ACTAAGTGTGCG
72906011 GATTCACTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
85 2 0.02
86 20 0.22
87 18 0.20
88 51 0.56
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.27
Consensus pattern (87 bp):
ACTAAGTGTGCGAGCTGAAAATTATACAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGT
GTGCGAGCTGAAAATATATAGC
Found at i:72905991 original size:59 final size:59
Alignment explanation
Indices: 72905824--72906010 Score: 281
Period size: 59 Copynumber: 3.2 Consensus size: 59
72905814 CAAGATTGGA
* * * * * * *
72905824 ACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTG--ATTATATAGC
1 ACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAG-CTGAAAATATATAGC
72905882 ACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATATAGC
1 ACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGC
72905940 ACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGC
1 ACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGC
72905999 ACTAAGTGTGCG
1 ACTAAGTGTGCG
72906011 GATTCACTAT
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
56 2 0.02
57 20 0.17
58 48 0.40
59 49 0.41
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.27
Consensus pattern (59 bp):
ACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGC
Found at i:72906022 original size:29 final size:29
Alignment explanation
Indices: 72905824--72906010 Score: 270
Period size: 29 Copynumber: 6.4 Consensus size: 29
72905814 CAAGATTGGA
* * * * *
72905824 ACTAAGTGTGCGGGTTTAAAATTGTACAGC
1 ACTAAGTGTGCGAGCTGAAAA-TATATAGC
* *
72905854 ACTAAGTGTGCGAGTTTG--ATTATATAGC
1 ACTAAGTGTGCGAG-CTGAAAATATATAGC
72905882 ACTAAGTGTGCGAGCTGAAAATATATAGC
1 ACTAAGTGTGCGAGCTGAAAATATATAGC
72905911 ACTAAGTGTGCGAGCTGAAAATATATAGC
1 ACTAAGTGTGCGAGCTGAAAATATATAGC
72905940 ACTAAGTGTGCGAGCTGAAAATTATATAGC
1 ACTAAGTGTGCGAGCTGAAAA-TATATAGC
72905970 ACTAAGTGTGCGAGCTGAAAATATATAGC
1 ACTAAGTGTGCGAGCTGAAAATATATAGC
72905999 ACTAAGTGTGCG
1 ACTAAGTGTGCG
72906011 GATTCACTAT
Statistics
Matches: 146, Mismatches: 7, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
27 2 0.01
28 20 0.14
29 80 0.55
30 42 0.29
31 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.27
Consensus pattern (29 bp):
ACTAAGTGTGCGAGCTGAAAATATATAGC
Found at i:72909067 original size:19 final size:19
Alignment explanation
Indices: 72909043--72909080 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
72909033 AGCCCTAAAT
72909043 TGACCCTAGTCGGAAAGCG
1 TGACCCTAGTCGGAAAGCG
72909062 TGACCCTAGTCGGAAAGCG
1 TGACCCTAGTCGGAAAGCG
72909081 GTTTCGGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.32, T:0.16
Consensus pattern (19 bp):
TGACCCTAGTCGGAAAGCG
Found at i:72911145 original size:40 final size:40
Alignment explanation
Indices: 72911090--72911311 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
72911080 TATTCGAATG
72911090 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
72911130 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
72911170 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
72911210 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
72911250 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
72911290 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
72911312 TACTTGGGTT
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.08
40 154 0.90
41 3 0.02
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:72913610 original size:114 final size:114
Alignment explanation
Indices: 72913410--72913638 Score: 449
Period size: 114 Copynumber: 2.0 Consensus size: 114
72913400 GTTGAGTTGT
72913410 CTGTAGTCTATACATAACCTCATCGACCCATCTTTTTTTTTCACAAAAAGTACCAGCACCCACGG
1 CTGTAGTCTATACATAACCTCATCGACCCATCTTTTTTTTTCACAAAAAGTACCAGCACCCACGG
72913475 AGAATAGCTCGGTCTCGCAAAACCCTTATCCGTTATTCTTGTAGCTGAG
66 AGAATAGCTCGGTCTCGCAAAACCCTTATCCGTTATTCTTGTAGCTGAG
*
72913524 CTGTAGTCTATACATAACCTCATCGACCCGTCTTTTTTTTTCACAAAAAGTACCAGCACCCACGG
1 CTGTAGTCTATACATAACCTCATCGACCCATCTTTTTTTTTCACAAAAAGTACCAGCACCCACGG
72913589 AGAATAGCTCGGTCTCGCAAAACCCTTATCCGTTATTCTTGTAGCTGAG
66 AGAATAGCTCGGTCTCGCAAAACCCTTATCCGTTATTCTTGTAGCTGAG
72913638 C
1 C
72913639 CTTCAACTCT
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (114 bp):
CTGTAGTCTATACATAACCTCATCGACCCATCTTTTTTTTTCACAAAAAGTACCAGCACCCACGG
AGAATAGCTCGGTCTCGCAAAACCCTTATCCGTTATTCTTGTAGCTGAG
Found at i:72918167 original size:26 final size:26
Alignment explanation
Indices: 72918138--72918190 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
72918128 TCCAACATGC
*
72918138 ATTTAGGTCAATTTA-CTCTTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
72918164 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
72918190 A
1 A
72918191 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:72919478 original size:24 final size:24
Alignment explanation
Indices: 72919444--72919544 Score: 141
Period size: 24 Copynumber: 4.2 Consensus size: 24
72919434 CCAACTCCCG
*
72919444 CTCCTTGATCAGCTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
*
72919468 CTCCTTTATCAGCTCCTATATAC-T
1 CTCCTTTATCAGCTCCTAAAT-CTT
* *
72919492 CTCCCTTATCAGCTCCTAAATCCT
1 CTCCTTTATCAGCTCCTAAATCTT
*
72919516 CTCCCTTATCAGCTCCTAAATCTT
1 CTCCTTTATCAGCTCCTAAATCTT
72919540 CTCCT
1 CTCCT
72919545 GACAGCCTTT
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
23 1 0.01
24 67 0.97
25 1 0.01
ACGTcount: A:0.20, C:0.38, G:0.05, T:0.38
Consensus pattern (24 bp):
CTCCTTTATCAGCTCCTAAATCTT
Found at i:72920083 original size:48 final size:48
Alignment explanation
Indices: 72920031--72920301 Score: 224
Period size: 48 Copynumber: 5.6 Consensus size: 48
72920021 AGTAAATTGT
* * *
72920031 CGATGCCATGTCCAAGATATGGTCTTATAATGGCTCACATGTAAAGGC
1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACATGTAAAGGC
* * * * * **
72920079 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCCCATCTCAATAC
1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACATGTAAAGGC
* **
72920127 CGATGCCATGTCCCAA-ACATGGTCTTACACTGGCTCTCATG-ATGTGGC
1 CGATGCCATGT-CCAAGACATGGTCTTACACTGGCTCACATGTA-AAGGC
* * * * * * ***
72920175 CGATGCCATGTCCTAGACATAGTCTTACACTAGCGCACATATCAACAT
1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACATGTAAAGGC
* ** * ** *
72920223 CGATGCCATGTCCCAGACATGGTCTTACACTCACTCTCATG-ATGTGGT
1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACATGTA-AAGGC
*
72920271 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCAAGACATGGTCTTACACT
72920302 AGTACACATA
Statistics
Matches: 175, Mismatches: 43, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
47 3 0.02
48 169 0.97
49 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCACATGTAAAGGC
Found at i:72920200 original size:96 final size:96
Alignment explanation
Indices: 72920031--72920314 Score: 365
Period size: 96 Copynumber: 3.0 Consensus size: 96
72920021 AGTAAATTGT
* * * * **
72920031 CGATGCCATGT-CCAAGATATGGTCTTATAATGGCTCACATG-TAAAGGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAA-ACATGGTCTTACACTGGCTCTCATGAT-GTGGCCGATGCCATGTCCCA
* * * *
72920094 GACATGGTCTTACACTAGCTCCCATCTCAATAC
64 GACATGGTCTTACACTAGCGCACATATCAACAC
*
72920127 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTCCTAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTCCCAGA
* *
72920192 CATAGTCTTACACTAGCGCACATATCAACAT
66 CATGGTCTTACACTAGCGCACATATCAACAC
* ** *
72920223 CGATGCCATGTCCCAGACATGGTCTTACACTCACTCTCATGATGTGGTCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTCCCAGA
**
72920288 CATGGTCTTACACTAGTACACATATCA
66 CATGGTCTTACACTAGCGCACATATCA
72920315 CCCAAATGTC
Statistics
Matches: 165, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
96 160 0.97
97 5 0.03
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGATGTGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCGCACATATCAACAC
Found at i:72930411 original size:18 final size:18
Alignment explanation
Indices: 72930388--72930454 Score: 80
Period size: 18 Copynumber: 3.7 Consensus size: 18
72930378 GAACTATTAT
* *
72930388 TTATTCACTAACAGTCAG
1 TTATTCAGTAACAATCAG
* *
72930406 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAG
* *
72930424 TTATTCAATAATAATCAG
1 TTATTCAGTAACAATCAG
72930442 TTATTCAGTAACA
1 TTATTCAGTAACA
72930455 GTCGATATTA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAATCAG
Found at i:72930702 original size:45 final size:45
Alignment explanation
Indices: 72930600--72930712 Score: 138
Period size: 45 Copynumber: 2.5 Consensus size: 45
72930590 CAGAACAAAT
**
72930600 TCGA-AACAGTAACAGTAACAGTATTCAACACACAAAGTGTTGAA
1 TCGATAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAA
** * * *
72930644 TCGATAATGGTAACAGTATCAGTATTCGACACTCAAAGTGCCGAA
1 TCGATAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAA
* *
72930689 TCGGTAACAGTAACGGTAACAGTA
1 TCGATAACAGTAACAGTAACAGTA
72930713 ACAGTAGTCG
Statistics
Matches: 56, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
44 4 0.07
45 52 0.93
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (45 bp):
TCGATAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAA
Found at i:72930707 original size:12 final size:12
Alignment explanation
Indices: 72930690--72930714 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72930680 AGTGCCGAAT
72930690 CGGTAACAGTAA
1 CGGTAACAGTAA
72930702 CGGTAACAGTAA
1 CGGTAACAGTAA
72930714 C
1 C
72930715 AGTAGTCGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:72932457 original size:19 final size:19
Alignment explanation
Indices: 72932430--72932467 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
72932420 TTTCATTCTG
*
72932430 TTTCTTTTCTATCTT-TTTT
1 TTTCATTTCT-TCTTCTTTT
72932449 TTTCATTTCTTCTTCTTTT
1 TTTCATTTCTTCTTCTTTT
72932468 GTTTTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTCATTTCTTCTTCTTTT
Found at i:72932623 original size:31 final size:32
Alignment explanation
Indices: 72932567--72932629 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
72932557 CACACTTGTC
*
72932567 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
72932599 ATAATATAAT-TATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
72932630 TTATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 15 0.54
32 13 0.46
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:72935774 original size:17 final size:17
Alignment explanation
Indices: 72935752--72935786 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
72935742 TTGAGCAATC
72935752 ACTAAAATAATATTCAG
1 ACTAAAATAATATTCAG
72935769 ACTAAAATAATATTCAG
1 ACTAAAATAATATTCAG
72935786 A
1 A
72935787 AGAATCATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (17 bp):
ACTAAAATAATATTCAG
Found at i:72938879 original size:40 final size:40
Alignment explanation
Indices: 72938824--72939039 Score: 351
Period size: 40 Copynumber: 5.4 Consensus size: 40
72938814 GGATGATAAA
* * *
72938824 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
72938864 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
72938904 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
72938944 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
72938984 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
72939024 CGGGCTATGTCCCGAA
1 CGGGCTAAGTCCCGAA
72939040 TGTGACAGCC
Statistics
Matches: 166, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 166 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:72940588 original size:24 final size:24
Alignment explanation
Indices: 72940556--72940618 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
72940546 AATCTCAAAT
72940556 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
72940580 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
72940604 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
72940619 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:72949299 original size:2 final size:2
Alignment explanation
Indices: 72949292--72949325 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
72949282 GCTCTTGCAC
72949292 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72949326 GTTTGCACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72950084 original size:40 final size:40
Alignment explanation
Indices: 72950029--72950285 Score: 349
Period size: 40 Copynumber: 6.5 Consensus size: 40
72950019 CGGATGATAA
* * *
72950029 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
72950069 CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
72950109 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72950149 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72950189 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
72950229 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGATATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
72950268 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72950286 TACTTGGCTT
Statistics
Matches: 197, Mismatches: 19, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
38 15 0.08
39 14 0.07
40 168 0.85
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72952876 original size:40 final size:38
Alignment explanation
Indices: 72952817--72953009 Score: 224
Period size: 39 Copynumber: 4.9 Consensus size: 38
72952807 TCGTTCAAAC
* * * *
72952817 GCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCAC-AAT
* *
72952857 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAAT
* *
72952896 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATT
1 -GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
* * *
72952935 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATTT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA-AT
* *
72952974 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
72953010 TTCATACACA
Statistics
Matches: 138, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
38 33 0.24
39 66 0.48
40 39 0.28
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.24
Consensus pattern (38 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAAT
Found at i:72952968 original size:77 final size:78
Alignment explanation
Indices: 72952816--72953011 Score: 252
Period size: 77 Copynumber: 2.5 Consensus size: 78
72952806 CTCGTTCAAA
* * * * * *
72952816 CGCCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATGCCTTCGGGACTTAACCCGGATAT
1 CGCCTTCGGG-CTTAGCCCGGATATCATATCTCGCAC-ATTGCCTTCGGGACTTAACCCGGATAT
72952881 CACAACTCGCACAAT
64 CACAACTCGCACAAT
*
72952896 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGG-CTTAGCCCGGATATCA
1 CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGGACTTAACCCGGATATCA
* *
72952960 CAATTCGCACATT
66 CAACTCGCACAAT
* *
72952973 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
1 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACATT
72953012 CATACACATC
Statistics
Matches: 104, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
77 60 0.58
78 13 0.12
79 21 0.20
80 10 0.10
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (78 bp):
CGCCTTCGGGCTTAGCCCGGATATCATATCTCGCACATTGCCTTCGGGACTTAACCCGGATATCA
CAACTCGCACAAT
Found at i:72953010 original size:39 final size:39
Alignment explanation
Indices: 72952856--72953011 Score: 235
Period size: 39 Copynumber: 4.0 Consensus size: 39
72952846 CCCGCACAAA
* * *
72952856 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACATT
* *
72952896 CGCCTTCGGGCTTAGCCCGGATATCA-TATCTCGCACA-T
1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACATT
72952934 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
72952973 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
72953012 CATACACATC
Statistics
Matches: 107, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
38 34 0.32
39 64 0.60
40 9 0.08
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACATT
Found at i:72955246 original size:18 final size:18
Alignment explanation
Indices: 72955223--72955306 Score: 105
Period size: 18 Copynumber: 4.6 Consensus size: 18
72955213 GAACGATTAT
*
72955223 TTATTCAGTAACAATCAG
1 TTATTCAGTAACAATCAA
*
72955241 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * *
72955259 TTATTCAATAATAATCAG
1 TTATTCAGTAACAATCAA
*
72955277 TTATTCAGTAACAATTAAA
1 TTATTCAGTAACAA-TCAA
72955296 TTATTCAGTAA
1 TTATTCAGTAA
72955307 TAGTTAATCT
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
18 42 0.76
19 13 0.24
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.37
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:72955556 original size:45 final size:45
Alignment explanation
Indices: 72955501--72955610 Score: 148
Period size: 45 Copynumber: 2.4 Consensus size: 45
72955491 GCTGAAACAG
* *
72955501 TAACAGTAACAGTAGCAGTATTCAACACACAAAGTGCTGAATCGA
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA
* * * * *
72955546 TAACGGTAACAGTATCAGTATTCGACACACAAAGTGCCGAATTGG
1 TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA
*
72955591 TAACAGTAACGGTAACAGTA
1 TAACAGTAACAGTAACAGTA
72955611 ACAGTAGTCA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (45 bp):
TAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATCGA
Found at i:72955601 original size:51 final size:48
Alignment explanation
Indices: 72955496--72955633 Score: 142
Period size: 45 Copynumber: 2.9 Consensus size: 48
72955486 TCGAAGCTGA
* * *
72955496 AACAGTAACAGTAACAGTAGCAGTATTCAACACACAAAGTGCTGAATCG
1 AACAGTAACGGTAACAGTAACAGTATTC-ACACACAAAGTGCCGAATCG
* *
72955545 ---A-TAACGGTAACAGTATCAGTATTCGACACACAAAGTGCCGAATTGG
1 AACAGTAACGGTAACAGTAACAGTATTC-ACACACAAAGTGCCGAA-TCG
*
72955591 TAACAGTAACGGTAACAGTAACAGTAGTCA-ACACATAAGTGCC
1 -AACAGTAACGGTAACAGTAACAGTATTCACACACA-AAGTGCC
72955634 TGATCAGTAA
Statistics
Matches: 75, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
45 37 0.49
46 3 0.04
49 5 0.07
50 9 0.12
51 21 0.28
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (48 bp):
AACAGTAACGGTAACAGTAACAGTATTCACACACAAAGTGCCGAATCG
Found at i:72957060 original size:27 final size:26
Alignment explanation
Indices: 72957004--72957060 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
72956994 CAACCTTAAC
* * *
72957004 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
**
72957030 CCTAGGGGTAAATTTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
72957057 CCTA
1 CCTA
72957061 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:72960394 original size:38 final size:39
Alignment explanation
Indices: 72960256--72960473 Score: 349
Period size: 39 Copynumber: 5.7 Consensus size: 39
72960246 TGTGTGAGAT
*
72960256 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
72960295 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
*
72960334 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
72960373 TTATATCC-GGCTAAGTCCCGAAGGCATTCGTG-TGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* *
72960410 TTATATCTGGGCTAAGT-CCGAA-GCATTCGTGCT-ATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
*
72960446 TTATATCC-GGCTAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
72960474 TGGGTTGGAA
Statistics
Matches: 169, Mismatches: 6, Indels: 10
0.91 0.03 0.05
Matches are distributed among these distances:
35 8 0.05
36 23 0.14
37 22 0.13
38 32 0.19
39 84 0.50
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
Found at i:72965485 original size:46 final size:46
Alignment explanation
Indices: 72965432--72965607 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
72965422 TATTTGGGCA
72965432 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
72965478 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTTG-GCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C--GAGCG
* **
72965525 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
72965571 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72965608 GCGGGTTGCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 4 0.04
45 3 0.03
46 65 0.59
47 31 0.28
48 3 0.03
50 4 0.04
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:72965587 original size:93 final size:93
Alignment explanation
Indices: 72965428--72965600 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
72965418 GGGATATTTG
* *
72965428 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72965493 TTGAGTCCGAGTTCGTGAGATGTAACTT
66 TTGAGTCCGAGTTCGTGAGATGTAACTT
* * *
72965521 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
72965586 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
72965601 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTT
Found at i:72969918 original size:2 final size:2
Alignment explanation
Indices: 72969906--72969937 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
72969896 TGTACCTTAA
72969906 AT AT AT GAT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT A
72969938 CGTATTAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:72970472 original size:39 final size:39
Alignment explanation
Indices: 72970427--72970650 Score: 333
Period size: 39 Copynumber: 5.7 Consensus size: 39
72970417 TATGTGAGAT
* *
72970427 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* *
72970466 TTATATCTGGGCTAAGTCCCGAAGGCATTCATGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
*
72970505 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTTG-TA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC-TGATA
* *
72970544 TTATATCCAGGCTAAGTCTCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* *
72970583 TTATATTCGGGCTAAGTCCCGAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* *
72970622 TTATATCCGGGCTAAGTTCTGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
72970651 TGGGTTGGAA
Statistics
Matches: 166, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 2 0.01
39 162 0.98
40 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
Found at i:72970526 original size:78 final size:78
Alignment explanation
Indices: 72970395--72970650 Score: 338
Period size: 78 Copynumber: 3.3 Consensus size: 78
72970385 AGGATTTTAA
* * * *
72970395 CCGGGCTAAGACCCGCAGGCCTT-ATG-TGAGATTTATATCC-AGGCTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCATGCTGATA-TTATATCCGA-GCTAAGTCCCGAAGGCATTC
72970457 GTGCTGGTATTATAT
64 GTGCTGGTATTATAT
*
72970472 CTGGGCTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGT
*
72970537 GCTTGTATTATAT
66 GCTGGTATTATAT
* * * * *
72970550 CCAGGCTAAGTCTCGAAGGCATTCGTGCTGATATTATATTCGGGCTAAGTCCCGAAGGCATTCGT
1 CCGGGCTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGT
* *
72970615 GCTGATGTTATAT
66 GCTGGTATTATAT
* *
72970628 CCGGGCTAAGTTCTGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
72970651 TGGGTTGGAA
Statistics
Matches: 157, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
77 19 0.12
78 133 0.85
79 5 0.03
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.29
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGT
GCTGGTATTATAT
Found at i:72970636 original size:117 final size:117
Alignment explanation
Indices: 72970427--72970650 Score: 369
Period size: 117 Copynumber: 1.9 Consensus size: 117
72970417 TATGTGAGAT
*
72970427 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCTGGGCTAAGTCCCGAAGGC
1 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCTGGGCTAAGTCCCGAAGGC
72970492 ATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTTGTA
66 ATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTTGTA
*
72970544 TTATATCCAGGCTAAGTCTCGAAGGCATTCGTGCTGATATTATAT-TCGGGCTAAGTCCCGAAGG
1 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCT-GGGCTAAGTCCCGAAGG
* * * * *
72970608 CATTCGTGCTGATGTTATATCCGGGCTAAGTTCTGAAGGCATT
65 CATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATT
72970651 TGGGTTGGAA
Statistics
Matches: 99, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
116 1 0.01
117 98 0.99
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.31
Consensus pattern (117 bp):
TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCTGGGCTAAGTCCCGAAGGC
ATTCATGCTGATATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTTGTA
Found at i:72984546 original size:40 final size:40
Alignment explanation
Indices: 72984492--72984715 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 40
72984482 CTTGCACAAG
* * *
72984492 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
72984532 GCCTTCGGGACTTAGCCCGGATATAGTCATTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* *
72984572 GCCTTC-GGTCTTAGCCCGGATATAATCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * * * *
72984611 GCCTTTGAGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
72984651 GCCTTC-GGATCTTAGTCTGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
72984692 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
72984716 CATTCGAATA
Statistics
Matches: 154, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
39 37 0.24
40 88 0.57
41 26 0.17
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:72984601 original size:79 final size:79
Alignment explanation
Indices: 72984456--72984715 Score: 292
Period size: 79 Copynumber: 3.3 Consensus size: 79
72984446 CTCAAGTAAT
* * * * * * *
72984456 CTTCAGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTC-GGTCTTAGCCCGGATATAGT
*
72984519 CACTAGCACAGATGC
65 CACTAGCACAAATGC
* *
72984534 CTTCGGGACTTAGCCCGGATATAGTC-ATTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAAT
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAGT
72984598 CACTAGCACAAATGC
65 CACTAGCACAAATGC
* * * * * * * *
72984613 CTTTGAGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCTGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGG-TCTTAGCCCGGATATAGT
*
72984678 CACCTAGCACAAAAGC
65 CA-CTAGCACAAATGC
72984694 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
72984716 CATTCGAATA
Statistics
Matches: 153, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
78 12 0.08
79 85 0.56
80 25 0.16
81 31 0.20
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGTCTTAGCCCGGATATAGTC
ACTAGCACAAATGC
Found at i:72984679 original size:119 final size:120
Alignment explanation
Indices: 72984456--72984715 Score: 300
Period size: 119 Copynumber: 2.2 Consensus size: 120
72984446 CTCAAGTAAT
* * * * *
72984456 CTTCAGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGAGTCTTAGCCCGGATATAGTC
* *
72984520 ACTAGCACAGATGCCTTCGGGACTTAGCCCGGATATAGTCA-TTAGCACAAATGC
66 ACTAGCACAGATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* * *
72984574 CTTC-GGTCTTAGCCCGGATATAA-TCACTAGCACAAATGCCTTTGAGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAACT-ACTAGCAC-AAGGCCTTCGAGTCTTAGCCCGGATATAG
* * * *
72984637 -CAACTCGCAC-GAATGCCTTC-GGATCTTAGTCTGGTTATAGTCACCTAGCACAAAAGC
64 TC-ACTAGCACAG-ATGCCTTCGGGA-CTTAGCCCGGATATAGTCACCTAGCACAAAAGC
72984694 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
72984716 CATTCGAATA
Statistics
Matches: 120, Mismatches: 14, Indels: 13
0.82 0.10 0.09
Matches are distributed among these distances:
117 7 0.06
118 26 0.22
119 56 0.47
120 15 0.12
121 16 0.13
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGAGTCTTAGCCCGGATATAGTC
ACTAGCACAGATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
Found at i:72992895 original size:37 final size:36
Alignment explanation
Indices: 72992833--72992907 Score: 123
Period size: 37 Copynumber: 2.1 Consensus size: 36
72992823 CTTTAGCTCA
*
72992833 GACAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAATCTCCACACGAAGTCATCGGGTCTTACCCG
*
72992869 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACA-AATCTCCACACGAAGTCATCGGGTCTTACCCG
72992906 GA
1 GA
72992908 ATACATTTCC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
36 4 0.11
37 32 0.89
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.23
Consensus pattern (36 bp):
GACAAATCTCCACACGAAGTCATCGGGTCTTACCCG
Found at i:72993013 original size:48 final size:48
Alignment explanation
Indices: 72992952--72993528 Score: 906
Period size: 48 Copynumber: 12.0 Consensus size: 48
72992942 TGTTACAACA
* *
72992952 TTCACATTAGCCATTTGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
72993000 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72993048 TTCACATTCA-CCATTCGGCTTTACCATATATACATATCTCATATATAT
1 TTCACATT-AGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * **
72993096 TTCACATTAGCCATTTGGCTTTACCACATATACATATCACACGTATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72993144 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
72993192 TTCACATTCGCTATTCGGC-TTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72993239 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
72993287 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72993335 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72993383 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
72993431 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72993479 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
72993527 TT
1 TT
72993529 ATCTTGTACA
Statistics
Matches: 481, Mismatches: 45, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
47 45 0.09
48 436 0.91
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:72997135 original size:40 final size:40
Alignment explanation
Indices: 72997103--72997453 Score: 533
Period size: 40 Copynumber: 8.8 Consensus size: 40
72997093 CCAGCATGAT
* * *
72997103 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
72997143 TGCTCTTCGGG-TTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
72997182 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
72997222 TGCTCTTCGGGACTTAGTCCGAATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
72997262 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
72997302 TGCTCCTCGGGACTTAACCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
72997342 TACTCCTCGGGACTTAACTCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
72997382 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
72997422 TGCTCTTCGGGACTTAGCCCAGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
72997454 CTCAATTCTC
Statistics
Matches: 290, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 34 0.12
40 256 0.88
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:72998780 original size:37 final size:37
Alignment explanation
Indices: 72998721--72998829 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
72998711 AGCTCAGACG
* * *
72998721 AAATCTCCACACGAAGTTATCGGGTCTTACACGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
72998758 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
72998795 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
72998830 ATACATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:72998945 original size:48 final size:48
Alignment explanation
Indices: 72998874--72999595 Score: 1111
Period size: 48 Copynumber: 15.0 Consensus size: 48
72998864 TGTTACAACA
* * *
72998874 TTCACATTAGCCATTTGGCTTTACCACATATAAATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
72998922 TTCACATTCGTCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
72998970 TTCACATTTGCCATTCAGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
72999018 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72999066 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
72999114 TTCACATTCGCCATTCGGCCTTACCACATATACATATCACACATACAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72999162 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
72999210 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72999258 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72999306 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
72999354 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72999402 TTCACATTCGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
*
72999450 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
72999498 TTCACATTCGCCATTTGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * *
72999546 TTCACATTAGCCATTCGGCTTTACGATATATACATATCTCATATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
72999594 TT
1 TT
72999596 ATCTTGTACA
Statistics
Matches: 611, Mismatches: 63, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 611 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:72999066 original size:144 final size:144
Alignment explanation
Indices: 72998874--72999595 Score: 1246
Period size: 144 Copynumber: 5.0 Consensus size: 144
72998864 TGTTACAACA
* * * *
72998874 TTCACATTAGCCATTTGGCTTTACCACATATAAATATCTCATACATATTTCACATTCGTCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG
* *
72998939 GCTTTACCACATATACATATCACACATATATTTCACATTTGCCATTCAGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
72999004 TATCTCATATATAT
131 TATCTCATATATAT
* * * * *
72999018 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG
* * * *
72999083 GCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCGGCCTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
* * *
72999148 TATCACACATACAT
131 TATCTCATATATAT
72999162 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG
72999227 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
72999292 TATCTCATATATAT
131 TATCTCATATATAT
72999306 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG
72999371 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
72999436 TATCTCATATATAT
131 TATCTCATATATAT
72999450 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG
* * *
72999515 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACGATATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
*
72999580 TATCTCATATGTAT
131 TATCTCATATATAT
72999594 TT
1 TT
72999596 ATCTTGTACA
Statistics
Matches: 546, Mismatches: 32, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
144 546 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (144 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTTG
GCTTTACCACATATACATATCACACATATATTTCACATTCGCCATTCGGCTTTACCACATATACA
TATCTCATATATAT
Found at i:73002888 original size:40 final size:40
Alignment explanation
Indices: 73002798--73003058 Score: 271
Period size: 40 Copynumber: 6.5 Consensus size: 40
73002788 CTCAAGTAAT
* * * *
73002798 CTTCGGGATTTAG-CCGGATATA-ACTACTTGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
73002836 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
73002876 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * * *
73002916 CTTCGGGTCTTAGCCTGAATATAATCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
73002956 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
73002996 CTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAATGC
*
73003037 CTTCAGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
73003059 CATTCGAATA
Statistics
Matches: 186, Mismatches: 29, Indels: 13
0.82 0.13 0.06
Matches are distributed among these distances:
38 11 0.06
39 18 0.10
40 127 0.68
41 27 0.15
42 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:73002929 original size:80 final size:80
Alignment explanation
Indices: 73002798--73003058 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
73002788 CTCAAGTAAT
* * * * * *
73002798 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
73002861 CACTAGCACAGATGC
66 CACTAGCACAAATGC
* * * *
73002876 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTCTTAGCCTGAATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
73002940 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
73002956 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
73003021 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
*
73003037 CTTCAGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
73003059 CATTCGAATA
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 93 0.61
81 32 0.21
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:73012179 original size:13 final size:13
Alignment explanation
Indices: 73012116--73012179 Score: 65
Period size: 13 Copynumber: 4.9 Consensus size: 13
73012106 AACACTTAAA
*
73012116 TTTTCCAAAGCAC
1 TTTTCAAAAGCAC
* *
73012129 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
73012142 TTCTCAAAAGTAC
1 TTTTCAAAAGCAC
* *
73012155 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
73012168 TTTTCAAAAGCA
1 TTTTCAAAAGCA
73012180 ATGAAGAACT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:73014309 original size:40 final size:39
Alignment explanation
Indices: 73014264--73014470 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
73014254 CGGAATACAA
*
73014264 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73014304 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73014344 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
*** *
73014384 CCGGATATGGTCACTAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
73014423 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
73014463 CCGGATAT
1 CCGGATAT
73014471 CATTCAATTG
Statistics
Matches: 142, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 35 0.25
40 107 0.75
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73014461 original size:79 final size:81
Alignment explanation
Indices: 73014264--73014470 Score: 242
Period size: 79 Copynumber: 2.6 Consensus size: 81
73014254 CGGAATACAA
* * *
73014264 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGCCCGGATA-GAACGACTTGCACAAA
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGCCCGGATATGAACGACTAGCACAAA
*
73014327 TGCCTTCGGGTATTAGC
65 TGCCTTCGGGTATTAAC
* * * **
73014344 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATGGTC-ACTAGCAC-AAT
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGAACGACTAGCACAAAT
*
73014407 GCCTTCGGGTCTTAAC
66 GCCTTCGGGTATTAAC
** * * *
73014423 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
73014471 CATTCAATTG
Statistics
Matches: 109, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 57 0.52
80 50 0.46
81 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (81 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:73022330 original size:40 final size:39
Alignment explanation
Indices: 73022285--73022491 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
73022275 CGGAATACAA
*
73022285 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73022325 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
73022365 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
73022405 CCGGATGT-GTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
73022444 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
73022484 CCGGATAT
1 CCGGATAT
73022492 CATTCAATTG
Statistics
Matches: 141, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
38 4 0.03
39 28 0.20
40 106 0.75
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73022474 original size:79 final size:80
Alignment explanation
Indices: 73022285--73022490 Score: 222
Period size: 79 Copynumber: 2.6 Consensus size: 80
73022275 CGGAATACAA
* * *
73022285 CCGGATATAACCAC-ATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT
1 CCGGATATAACAACTA-GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAAT
*
73022349 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * * **
73022365 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTGTC-ACTAGCAC-AAT
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAG-AACGACTAGCACAAAT
*
73022427 GGCCTTCGGGTCTTAAC
65 -GCCTTCGGGTATTAAC
** * * *
73022444 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
73022491 TCATTCAATT
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 3 0.03
79 60 0.57
80 43 0.41
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:73027812 original size:24 final size:24
Alignment explanation
Indices: 73027747--73027815 Score: 63
Period size: 24 Copynumber: 2.9 Consensus size: 24
73027737 GAGCTGATGG
* *
73027747 ACAGTAAACTC-TATTGAGTTG-AA
1 ACAGTAAGCTCTTA-TGAGCTGAAA
* *
73027770 ACAGCAAGCT-TTGACGAGCTGAAA
1 ACAGTAAGCTCTT-ATGAGCTGAAA
73027794 ACAGTAAGCTCTTATGAGCTGA
1 ACAGTAAGCTCTTATGAGCTGA
73027816 TATATCGGTA
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
23 14 0.39
24 20 0.56
25 2 0.06
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (24 bp):
ACAGTAAGCTCTTATGAGCTGAAA
Found at i:73035923 original size:40 final size:40
Alignment explanation
Indices: 73035822--73036042 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
73035812 TATTCGAATG
* * *
73035822 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
73035863 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
73035903 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
73035943 ATATCCGGGATAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
73035983 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
73036022 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
73036043 ATACTTGGGT
Statistics
Matches: 151, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 15 0.10
40 94 0.62
41 28 0.19
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:73043992 original size:40 final size:40
Alignment explanation
Indices: 73043891--73044111 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
73043881 TATTCGAATG
* * *
73043891 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
73043932 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
73043972 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
73044012 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
73044052 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
73044091 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
73044112 ATACTTGGGT
Statistics
Matches: 153, Mismatches: 26, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.08
39 15 0.10
40 96 0.63
41 28 0.18
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:73047922 original size:40 final size:39
Alignment explanation
Indices: 73047878--73048059 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
73047868 GTTCAAAACA
* * ** * *
73047878 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73047918 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73047958 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73047997 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73048036 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
73048060 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73047989 original size:39 final size:39
Alignment explanation
Indices: 73047908--73048060 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
73047898 TATGGTAACC
* *
73047908 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73047948 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73047987 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73048026 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
73048061 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73055993 original size:40 final size:39
Alignment explanation
Indices: 73055935--73056116 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
73055925 CGTTCAAACA
* * ** * *
73055935 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73055975 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73056015 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73056054 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73056093 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
73056117 CTCGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73056046 original size:39 final size:39
Alignment explanation
Indices: 73055965--73056117 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
73055955 TATGGTAACC
* *
73055965 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73056005 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73056044 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73056083 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
73056118 TCGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73060213 original size:21 final size:20
Alignment explanation
Indices: 73060189--73060227 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
73060179 GAGTATTTTG
73060189 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAG-TTATGA
73060210 ATGTTTGATGATAGTTAT
1 ATGTTTGATGATAGTTAT
73060228 ACAAGTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
ATGTTTGATGATAGTTATGA
Found at i:73060235 original size:20 final size:21
Alignment explanation
Indices: 73060191--73060235 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
73060181 GTATTTTGAT
*
73060191 GTTTGATGATAGATTATGAAT
1 GTTTGATGATAGATTATGAAA
73060212 GTTTGATGATAG-TTAT-ACAA
1 GTTTGATGATAGATTATGA-AA
73060232 GTTT
1 GTTT
73060236 TCTTAAGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.41
21 12 0.55
ACGTcount: A:0.31, C:0.02, G:0.22, T:0.44
Consensus pattern (21 bp):
GTTTGATGATAGATTATGAAA
Done.