Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 239 of 425
Found at i:73064435 original size:28 final size:28
Alignment explanation
Indices: 73064403--73064488 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
73064393 GCAAACTCAG
73064403 TTTTTCTTTCCAGCCAAATCTCAACACC
1 TTTTTCTTTCCAGCCAAATCTCAACACC
** ** * *
73064431 TTTTTCCATGGAGACAGAA-CT---CA-G
1 TTTTTCTTTCCAGCCA-AATCTCAACACC
73064455 TTTTTCTTTCCAGCCAAATCTCAACACC
1 TTTTTCTTTCCAGCCAAATCTCAACACC
73064483 TTTTTC
1 TTTTTC
73064489 CATGGAGACA
Statistics
Matches: 40, Mismatches: 12, Indels: 12
0.62 0.19 0.19
Matches are distributed among these distances:
23 2 0.05
24 13 0.32
25 2 0.05
27 2 0.05
28 19 0.47
29 2 0.05
ACGTcount: A:0.24, C:0.30, G:0.08, T:0.37
Consensus pattern (28 bp):
TTTTTCTTTCCAGCCAAATCTCAACACC
Found at i:73064458 original size:52 final size:52
Alignment explanation
Indices: 73064396--73064499 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
73064386 ATAAATCGCA
73064396 AACTCAGTTTTTCTTTCCAGCCAAATCTCAACACCTTTTTCCATGGAGACAG
1 AACTCAGTTTTTCTTTCCAGCCAAATCTCAACACCTTTTTCCATGGAGACAG
73064448 AACTCAGTTTTTCTTTCCAGCCAAATCTCAACACCTTTTTCCATGGAGACAG
1 AACTCAGTTTTTCTTTCCAGCCAAATCTCAACACCTTTTTCCATGGAGACAG
73064500 TTTCAAGAAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (52 bp):
AACTCAGTTTTTCTTTCCAGCCAAATCTCAACACCTTTTTCCATGGAGACAG
Found at i:73068203 original size:40 final size:40
Alignment explanation
Indices: 73068128--73068333 Score: 317
Period size: 40 Copynumber: 5.2 Consensus size: 40
73068118 AACCCAAGTA
* * * *
73068128 CCTTCGGGATTTAG-CTGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
73068167 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
73068207 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
**
73068247 CCTTCAAGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
73068287 CCTTCGGGACTTAGCCCAGATATAGTAACT-AGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCA-CACAAATG
73068327 CCTTCGG
1 CCTTCGG
73068334 ATCTTAGTCC
Statistics
Matches: 154, Mismatches: 11, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 14 0.09
40 140 0.91
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:73071695 original size:40 final size:40
Alignment explanation
Indices: 73071618--73071799 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
73071608 AAACCAAGTA
* * *
73071618 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* **
73071657 CCTTCGGGACTTAGCCCAGTTATAGTAACTCGTGCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
73071697 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
73071737 CCTTCGGGACTTAGCCCGGATT-TAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATG
*
73071777 CCTTCTGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
73071800 CATCCGAATA
Statistics
Matches: 125, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
39 16 0.13
40 108 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:73080642 original size:21 final size:21
Alignment explanation
Indices: 73080605--73080645 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
73080595 GAAAAATGAA
73080605 AAAAATAAAATTAAGAATTTGG
1 AAAAATAAAA-TAAGAATTTGG
73080627 AAAAATAAAA-ACAGAATTT
1 AAAAATAAAATA-AGAATTT
73080646 AAAGTGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 7 0.39
22 10 0.56
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.24
Consensus pattern (21 bp):
AAAAATAAAATAAGAATTTGG
Found at i:73081456 original size:27 final size:26
Alignment explanation
Indices: 73081426--73081488 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
73081416 AGATAATTAA
73081426 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
73081453 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
73081480 AATATAAAT
1 AATA-AAAT
73081489 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:73081475 original size:15 final size:15
Alignment explanation
Indices: 73081455--73081484 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73081445 ATAATCCTAA
*
73081455 TAATTATCTTAATAT
1 TAATTATCCTAATAT
73081470 TAATTATCCTAATAT
1 TAATTATCCTAATAT
73081485 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:73093431 original size:39 final size:39
Alignment explanation
Indices: 73093387--73093616 Score: 388
Period size: 39 Copynumber: 5.9 Consensus size: 39
73093377 TACCAGTACA
* *
73093387 AAGCCTGCGGGACTTTAACCCGGATACATTTCCCGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
73093426 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
73093465 AAGCCTGCGGGACTTTAGCCCGAATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
73093504 AAGCCTGCGGGACTTTGGCCCTGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
73093543 AAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
73093582 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
73093617 TGTCTTGCAT
Statistics
Matches: 179, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 179 1.00
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:73097478 original size:27 final size:27
Alignment explanation
Indices: 73097444--73097581 Score: 213
Period size: 27 Copynumber: 5.1 Consensus size: 27
73097434 TGGATAAGTT
*
73097444 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
73097471 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
73097498 GCAGAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
73097525 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
73097552 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
73097579 GTA
1 GTA
73097582 AAACCATTTT
Statistics
Matches: 101, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:73098314 original size:2 final size:2
Alignment explanation
Indices: 73098307--73098348 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
73098297 GCTTCGCCAC
73098307 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
73098349 CTGTTCTGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73102753 original size:47 final size:47
Alignment explanation
Indices: 73102635--73102805 Score: 169
Period size: 45 Copynumber: 3.7 Consensus size: 47
73102625 GGATGGTTGA
* * *
73102635 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTGA-GGATGCAAAG
*
73102683 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTGAGGATGCAA--AG
* * *
73102728 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA-
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTGA-GGATGCAAAG
*
73102775 -C--CCTGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 GCATCC-GAACTCGTTGAGTTGAGTCCGAGTTCA
73102806 CTTAGGGGCG
Statistics
Matches: 106, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 30 0.28
46 30 0.28
47 29 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTGAGGATGCAAAG
Found at i:73103071 original size:19 final size:20
Alignment explanation
Indices: 73103034--73103071 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73103024 ATAAGGTGGT
73103034 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
73103054 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
73103072 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:73113959 original size:34 final size:34
Alignment explanation
Indices: 73113915--73113981 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
73113905 ATCCTACAAC
73113915 TGAAGAAGAACAAGTCAACTATATGGGTAACACT
1 TGAAGAAGAACAAGTCAACTATATGGGTAACACT
*
73113949 TGAAGGAGAACAAGTCAACTATATGGGTAACAC
1 TGAAGAAGAACAAGTCAACTATATGGGTAACAC
73113982 CTCCTCAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.43, C:0.15, G:0.22, T:0.19
Consensus pattern (34 bp):
TGAAGAAGAACAAGTCAACTATATGGGTAACACT
Found at i:73127033 original size:40 final size:40
Alignment explanation
Indices: 73126989--73127098 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
73126979 TTCACAATTT
* *
73126989 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
73127029 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
73127069 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
73127099 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:73129111 original size:49 final size:47
Alignment explanation
Indices: 73128997--73129119 Score: 131
Period size: 47 Copynumber: 2.6 Consensus size: 47
73128987 TAATGTCGAT
* * * * *
73128997 GCCATGTCCAAGACATGGTCTTACACTGGCTCATCCATCAAGTTGAT
1 GCCATGTCCAAGACATGGTCTTACACTGACTCATCAACCAAGCTGAC
* * *
73129044 GCCATGTCCCAGGCATGGTCTTACACTGACT-ATCGAAACCGAGACTGAC
1 GCCATGTCCAAGACATGGTCTTACACTGACTCATC--AACCAAG-CTGAC
*
73129093 GCCATGTCCTAGACATGGTCTTACACT
1 GCCATGTCCAAGACATGGTCTTACACT
73129120 AGCTCTCTGT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
46 3 0.05
47 28 0.44
48 4 0.06
49 28 0.44
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (47 bp):
GCCATGTCCAAGACATGGTCTTACACTGACTCATCAACCAAGCTGAC
Found at i:73130204 original size:19 final size:20
Alignment explanation
Indices: 73130180--73130217 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73130170 GGTACCACCA
73130180 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
73130199 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
73130218 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:73130605 original size:93 final size:93
Alignment explanation
Indices: 73130446--73130616 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
73130436 CGCCCTAAGT
* *
73130446 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
73130511 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
73130539 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
73130604 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73130617 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:73130613 original size:46 final size:46
Alignment explanation
Indices: 73130441--73130613 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
73130431 TAACCCGCCC
* * * *
73130441 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
73130487 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
73130535 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
73130580 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73130614 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:73146794 original size:40 final size:40
Alignment explanation
Indices: 73146727--73146947 Score: 277
Period size: 40 Copynumber: 5.6 Consensus size: 40
73146717 ATTCGGATTG
*
73146727 ATAATCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** * * *
73146766 ATATTCGGGCTAAGACCCGAAGGTATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73146806 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73146846 ATAACCGGGCTAAGTCCCGAATGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
73146886 ATAACCGAGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
73146926 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
73146948 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
39 28 0.17
40 132 0.82
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73149549 original size:19 final size:20
Alignment explanation
Indices: 73149525--73149562 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
73149515 GATACCACCA
73149525 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
73149544 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
73149563 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:73151248 original size:46 final size:44
Alignment explanation
Indices: 73151198--73151331 Score: 110
Period size: 46 Copynumber: 3.0 Consensus size: 44
73151188 ATTGCACTCT
* * *
73151198 CACATATCCGT-GCTGATGCCATGTTCCAGACATGGTCTTACACTGA
1 CACATAT-CGTAGCCGATG-CATGTCCCAAACAT-GTCTTACACTGA
* * *
73151244 CACATCTCGTAGCCGATGCATGTCCCAAACATGTCTTATACTGG
1 CACATATCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGA
* * * *
73151288 CTTACATCTTG-AGGCCGATGCATGTCCCAGACATGGCTTACACT
1 C--ACATATCGTA-GCCGATGCATGTCCCAAACATGTCTTACACT
73151332 AGCTCTCATC
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
44 11 0.15
45 16 0.22
46 47 0.64
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (44 bp):
CACATATCGTAGCCGATGCATGTCCCAAACATGTCTTACACTGA
Found at i:73151342 original size:46 final size:47
Alignment explanation
Indices: 73151212--73151387 Score: 186
Period size: 46 Copynumber: 3.8 Consensus size: 47
73151202 TATCCGTGCT
* * *
73151212 GATGCCATGTTCCAGACATGGTCTTACACT-G-ACACATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCG-AGCC
* * *
73151258 GATG-CATGTCCCAAACAT-GTCTTATACTGGCT-TACATCTTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTCGA-GCC
* *
73151304 GATG-CATGTCCCAGACATGG-CTTACACTAGCTCTCATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGA-GCC
*
73151350 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
73151388 AATAACTCGA
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
44 9 0.08
45 14 0.13
46 53 0.49
47 17 0.16
48 15 0.14
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCGAGCC
Found at i:73156055 original size:16 final size:16
Alignment explanation
Indices: 73156034--73156098 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 16
73156024 ATCTCATAAT
73156034 CATTTCTCATATTTTC
1 CATTTCTCATATTTTC
*
73156050 CATTTC-AATATTTTC
1 CATTTCTCATATTTTC
*
73156065 TCA--TCTCATA--CT-
1 -CATTTCTCATATTTTC
*
73156077 CATTTCTCATCTTTTC
1 CATTTCTCATATTTTC
73156093 CATTTC
1 CATTTC
73156099 AATATCAATC
Statistics
Matches: 37, Mismatches: 5, Indels: 14
0.66 0.09 0.25
Matches are distributed among these distances:
11 2 0.05
13 7 0.19
14 2 0.05
15 12 0.32
16 14 0.38
ACGTcount: A:0.20, C:0.28, G:0.00, T:0.52
Consensus pattern (16 bp):
CATTTCTCATATTTTC
Found at i:73156067 original size:43 final size:43
Alignment explanation
Indices: 73156018--73156103 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
73156008 TCATATTTCA
73156018 TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
* *
73156061 TTTCTCATCTCATACTCATTTCTCATCTTTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
73156104 CAATCACATG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
Found at i:73157373 original size:3 final size:3
Alignment explanation
Indices: 73157331--73157363 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
73157321 TTTAATGTAC
73157331 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
73157364 ACCTTATTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:73157436 original size:26 final size:24
Alignment explanation
Indices: 73157391--73157442 Score: 59
Period size: 26 Copynumber: 2.1 Consensus size: 24
73157381 ACATACATTT
**
73157391 TATACAATTTATTAGTATAACATA
1 TATACAATTTATTAACATAACATA
*
73157415 TATACATATTATATTAACATAATATA
1 TATACA-ATT-TATTAACATAACATA
73157441 TA
1 TA
73157443 ATATATATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 6 0.26
25 3 0.13
26 14 0.61
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (24 bp):
TATACAATTTATTAACATAACATA
Found at i:73164201 original size:16 final size:16
Alignment explanation
Indices: 73164182--73164221 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
73164172 GTACTTTGGA
73164182 TTCAGATTTATTCAAG
1 TTCAGATTTATTCAAG
* * *
73164198 TTCAAATTTTTTCAGG
1 TTCAGATTTATTCAAG
73164214 TTCAGATT
1 TTCAGATT
73164222 AGCTAAGGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (16 bp):
TTCAGATTTATTCAAG
Found at i:73165985 original size:131 final size:131
Alignment explanation
Indices: 73165763--73166006 Score: 425
Period size: 131 Copynumber: 1.9 Consensus size: 131
73165753 CTAGGTTCAA
* * *
73165763 CCAAGCTTCCTTTAGCGCATGTAAGTGTTTTCAAGCCTCGTTTTTAATGATTTCTATGTTTTTGA
1 CCAAGCTTCCATTAGCGCATGTAAGTGTTTTCAACCCCCGTTTTTAATGATTTCTATGTTTTTGA
* *
73165828 GGTCGTTTTAGCTTAATCTAGCTAGCCCGGGGGTCAATTTGTAAAACTGCTAAAGGCTAGGTTTG
66 GGTCGTTTTAGCTTAATCTAGCTAGCCCGAGAGTCAATTTGTAAAACTGCTAAAGGCTAGGTTTG
73165893 G
131 G
*
73165894 CCAAGCTTCCATTAGCGCATGTAATTGTTTTCAACCCCCGTTTTTAATGATTTCTATGTTTTTGA
1 CCAAGCTTCCATTAGCGCATGTAAGTGTTTTCAACCCCCGTTTTTAATGATTTCTATGTTTTTGA
*
73165959 GGTCGTTTTAGCTTAATTTAGCTAGCCCGAGAGTCAATTTGTAAAACT
66 GGTCGTTTTAGCTTAATCTAGCTAGCCCGAGAGTCAATTTGTAAAACT
73166007 ATTAAAGGTT
Statistics
Matches: 106, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 106 1.00
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (131 bp):
CCAAGCTTCCATTAGCGCATGTAAGTGTTTTCAACCCCCGTTTTTAATGATTTCTATGTTTTTGA
GGTCGTTTTAGCTTAATCTAGCTAGCCCGAGAGTCAATTTGTAAAACTGCTAAAGGCTAGGTTTG
G
Found at i:73167994 original size:70 final size:71
Alignment explanation
Indices: 73167910--73168072 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
73167900 CGATTTGTCT
73167910 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
73167974 CTTTCA
66 CTTTCA
73167980 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
73168045 CTTTCA
66 CTTTCA
73168051 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
73168073 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:73168110 original size:71 final size:70
Alignment explanation
Indices: 73167910--73168106 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
73167900 CGATTTGTCT
* * * *
73167910 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
73167974 CTTTCA
65 CTTTCA
* * * *
73167980 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
73168045 CTTTCA
65 CTTTCA
* *
73168051 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
73168107 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 53 0.45
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:73175570 original size:71 final size:71
Alignment explanation
Indices: 73175486--73175649 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73175476 CGATTTGTCT
73175486 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
73175551 CTTTCA
66 CTTTCA
73175557 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
73175622 CTTTCA
66 CTTTCA
73175628 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
73175650 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:73175687 original size:71 final size:70
Alignment explanation
Indices: 73175486--73175683 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
73175476 CGATTTGTCT
* * * *
73175486 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
73175551 CTTTCA
65 CTTTCA
* * * *
73175557 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
73175622 CTTTCA
65 CTTTCA
* *
73175628 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
73175684 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:73178157 original size:30 final size:30
Alignment explanation
Indices: 73178114--73178206 Score: 123
Period size: 30 Copynumber: 3.1 Consensus size: 30
73178104 ACAGCCTAAC
* *
73178114 ACACGGGCGTGTGGGGTAACTCAGAGAGTT
1 ACACAGGCGTGTGGGGCAACTCAGAGAGTT
* * *
73178144 ACACAGGCATGTGGGGCAGCTCGGAGAGTT
1 ACACAGGCGTGTGGGGCAACTCAGAGAGTT
* *
73178174 ACACAAGTGTGTGGGGCAACTCAGAGAGTT
1 ACACAGGCGTGTGGGGCAACTCAGAGAGTT
73178204 ACA
1 ACA
73178207 TGGCTTGGTA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.27, C:0.18, G:0.37, T:0.18
Consensus pattern (30 bp):
ACACAGGCGTGTGGGGCAACTCAGAGAGTT
Found at i:73178781 original size:61 final size:61
Alignment explanation
Indices: 73178658--73178888 Score: 182
Period size: 61 Copynumber: 3.8 Consensus size: 61
73178648 CCTTTATGGA
* * * * * *
73178658 AAAGCCTTTGTAGCGAGTACTAAATGTTAAGGAAT-ACTTTTATGGAAAAAATCT-AGATAGG
1 AAAGCCTTTGCAGTGAGTACTGAATGTTAAGGAATGAC-TTTATGGCAAAACTCTGA-ACAGG
* * *
73178719 AAAGCCTTTGCAGTGAGTACTGAATGTTAAGGAATGTCTTTGTGGCAAAACTTTGAACAGG
1 AAAGCCTTTGCAGTGAGTACTGAATGTTAAGGAATGACTTTATGGCAAAACTCTGAACAGG
* * * * * * * * *
73178780 AAAGCCTTT-CTGGTGAGTAGTGAATGTTAAGGAATGCCTTTCTAGCCAAACACTGGACATG
1 AAAGCCTTTGC-AGTGAGTACTGAATGTTAAGGAATGACTTTATGGCAAAACTCTGAACAGG
* ** * * *
73178841 AAAGCCTATGTGGTAAGTATTGAATGTTAAGGAA-CACCTTTATGGCAA
1 AAAGCCTTTGCAGTGAGTACTGAATGTTAAGGAATGA-CTTTATGGCAA
73178889 GACTTAGGGA
Statistics
Matches: 137, Mismatches: 28, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
60 1 0.01
61 134 0.98
62 2 0.01
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (61 bp):
AAAGCCTTTGCAGTGAGTACTGAATGTTAAGGAATGACTTTATGGCAAAACTCTGAACAGG
Found at i:73180824 original size:30 final size:30
Alignment explanation
Indices: 73180778--73180838 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
73180768 TTCTCGAGCC
*
73180778 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* * *
73180808 TAGGGGTAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
73180838 T
1 T
73180839 GTATTAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:73191774 original size:25 final size:25
Alignment explanation
Indices: 73191725--73191798 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 25
73191715 GCGGATACTC
* * **
73191725 CATAGCTCGTGAGAGCATATTGATT
1 CATAGATCGTAAGAGCATACCGATT
* * *
73191750 TATAGTTTGTAAGAGCATACCGATT
1 CATAGATCGTAAGAGCATACCGATT
*
73191775 CATAGATCGTGAGAGCATACCGAT
1 CATAGATCGTAAGAGCATACCGAT
73191799 CTACAACTCG
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (25 bp):
CATAGATCGTAAGAGCATACCGATT
Found at i:73193158 original size:77 final size:75
Alignment explanation
Indices: 73193017--73193160 Score: 168
Period size: 77 Copynumber: 1.9 Consensus size: 75
73193007 GGGGATACAT
* * * *
73193017 TGATTTGGCTTCGGGCCATGGTATAGTACTTCGGGTACGAGTTATACTGATTTGGCTTCGGGCCA
1 TGATTTGGCTTCGGGCCATGATATAGTACTTCGGATAC-AGTTAGACTGATTTGGCTTCAGGCCA
73193082 TGCATATCAGC
65 TGCATATCAGC
*
73193093 TGATTTGGCTTCGGGCCATGATATTAGTACTTCAGAGATA-AGTT-GCCTTGATTTGGCTAT-AG
1 TGATTTGGCTTCGGGCCATGATA-TAGTACTTC-G-GATACAGTTAGAC-TGATTTGGCT-TCAG
73193155 GCCATG
61 GCCATG
73193161 GTATAGGTAC
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
76 23 0.40
77 30 0.52
78 2 0.03
79 3 0.05
ACGTcount: A:0.20, C:0.18, G:0.28, T:0.34
Consensus pattern (75 bp):
TGATTTGGCTTCGGGCCATGATATAGTACTTCGGATACAGTTAGACTGATTTGGCTTCAGGCCAT
GCATATCAGC
Found at i:73195609 original size:40 final size:40
Alignment explanation
Indices: 73195565--73195749 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
73195555 GCTACTCATT
* *
73195565 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
73195605 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
73195645 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
73195684 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
73195725 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73195750 CATCATTCGA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 4 0.03
39 29 0.23
40 79 0.63
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:73195667 original size:79 final size:82
Alignment explanation
Indices: 73195565--73195749 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
73195555 GCTACTCATT
* **
73195565 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
73195628 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
73195645 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
73195708 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
73195725 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73195750 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 5 0.05
79 54 0.59
80 30 0.33
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:73201066 original size:48 final size:48
Alignment explanation
Indices: 73201014--73201195 Score: 204
Period size: 48 Copynumber: 3.8 Consensus size: 48
73201004 GGCAGTTATG
* * * *
73201014 TGAGATCCCATGTAAAACCATGTCTAGGACATGGCATTGGCATCGAGA
1 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATA
* * * *
73201062 TGAGATCCCGTATAAGACCATGTCTGGGACATGGCATCGGCGTTGATA
1 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATA
* * * *
73201110 TGTG-TGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATA
1 TGAGATCCCA-TGTAAGACCATGTCTGGGACATGGCATCGGCATCGATA
* ** *
73201158 TGTGATTTCGTGTAAGACCATGTCTGGGACATGGCATC
1 TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATC
73201196 ATTATGAGAC
Statistics
Matches: 112, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
47 2 0.02
48 109 0.97
49 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (48 bp):
TGAGATCCCATGTAAGACCATGTCTGGGACATGGCATCGGCATCGATA
Found at i:73208058 original size:30 final size:30
Alignment explanation
Indices: 73208017--73208093 Score: 127
Period size: 30 Copynumber: 2.6 Consensus size: 30
73208007 TGTGTCTCAG
* *
73208017 CCGTGTATGACACACGGCCAGGTCACATGA
1 CCGTGTGTGACACACGGCCAGGTCACACGA
*
73208047 CTGTGTGTGACACACGGCCAGGTCACACGA
1 CCGTGTGTGACACACGGCCAGGTCACACGA
73208077 CCGTGTGTGACACACGG
1 CCGTGTGTGACACACGG
73208094 TTTGTATATT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (30 bp):
CCGTGTGTGACACACGGCCAGGTCACACGA
Found at i:73213931 original size:28 final size:28
Alignment explanation
Indices: 73213899--73213954 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
73213889 AAAACTAGGA
73213899 AAGAAGTAATGGAAATATTAAAAAGATT
1 AAGAAGTAATGGAAATATTAAAAAGATT
*
73213927 AAGAAGTAATGGAAATTTTAAAAAGATT
1 AAGAAGTAATGGAAATATTAAAAAGATT
73213955 TAGTGAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.18, T:0.27
Consensus pattern (28 bp):
AAGAAGTAATGGAAATATTAAAAAGATT
Found at i:73214864 original size:30 final size:30
Alignment explanation
Indices: 73214828--73214889 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
73214818 AAGAAAAAAA
*
73214828 CTACCTTCACATGTCTTTTTGGTACTTACG
1 CTACCTTCACATGTCCTTTTGGTACTTACG
73214858 CTACCTTCACATGTCCTTTTGGTACTTACG
1 CTACCTTCACATGTCCTTTTGGTACTTACG
73214888 CT
1 CT
73214890 TTCAGACGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.16, C:0.29, G:0.13, T:0.42
Consensus pattern (30 bp):
CTACCTTCACATGTCCTTTTGGTACTTACG
Found at i:73218700 original size:7 final size:7
Alignment explanation
Indices: 73218688--73218787 Score: 164
Period size: 7 Copynumber: 14.1 Consensus size: 7
73218678 TAACACTCTC
73218688 GTTTAGG
1 GTTTAGG
73218695 GTTTAGG
1 GTTTAGG
*
73218702 ATTTAGG
1 GTTTAGG
73218709 GTTTAGG
1 GTTTAGG
73218716 GTTTTAGG
1 G-TTTAGG
73218724 GTTTAGG
1 GTTTAGG
73218731 GTTTAGG
1 GTTTAGG
*
73218738 GTTTAGA
1 GTTTAGG
73218745 GTTTAGG
1 GTTTAGG
*
73218752 GTTTAGA
1 GTTTAGG
73218759 GTTTAGG
1 GTTTAGG
73218766 GTTTAGG
1 GTTTAGG
73218773 GTTTAGG
1 GTTTAGG
73218780 GTTTAGG
1 GTTTAGG
73218787 G
1 G
73218788 GACTTGGGGA
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
7 79 0.92
8 7 0.08
ACGTcount: A:0.17, C:0.00, G:0.40, T:0.43
Consensus pattern (7 bp):
GTTTAGG
Found at i:73221430 original size:40 final size:39
Alignment explanation
Indices: 73221385--73221514 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 39
73221375 CGGAACATAA
73221385 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
73221425 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
73221465 CCGGATGTAGCCACTAGCACAATTGCCTTTGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
73221505 CCGGATATAA
1 CCGGATATAA
73221515 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 15, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
38 1 0.01
40 68 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73221535 original size:80 final size:80
Alignment explanation
Indices: 73221401--73221550 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
73221391 ATAACCATGT
*
73221401 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
73221465 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * * *
73221481 GCACAATTGCCTTTGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
73221544 CCCGGAT
64 CCCGGAT
73221551 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:73227841 original size:16 final size:16
Alignment explanation
Indices: 73227820--73227851 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
73227810 GTTGAGAGTC
73227820 CGCCGGCGCTGTCCCT
1 CGCCGGCGCTGTCCCT
73227836 CGCCGGCGCTGTCCCT
1 CGCCGGCGCTGTCCCT
73227852 TGCGCGGGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.50, G:0.31, T:0.19
Consensus pattern (16 bp):
CGCCGGCGCTGTCCCT
Found at i:73229440 original size:40 final size:39
Alignment explanation
Indices: 73229395--73229524 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 39
73229385 CGGAACATAA
73229395 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
73229435 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * * *
73229475 CCGGATGTAGCCACTAGCACAATTGCCTTTGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
73229515 CCGGATATAA
1 CCGGATATAA
73229525 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 15, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
38 1 0.01
40 68 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73229545 original size:80 final size:80
Alignment explanation
Indices: 73229411--73229560 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
73229401 ATAACCATGT
*
73229411 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
73229475 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * * *
73229491 GCACAATTGCCTTTGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
73229554 CCCGGAT
64 CCCGGAT
73229561 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 3 0.05
80 56 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:73231290 original size:27 final size:27
Alignment explanation
Indices: 73231251--73231304 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
73231241 GCTGTCACAA
*
73231251 TACCCCTATAGGGTAAAATGACT-ATTT
1 TACCCCTAGAGGGT-AAATGACTGATTT
*
73231278 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
73231305 GTGCTATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAATGACTGATTT
Found at i:73231520 original size:20 final size:20
Alignment explanation
Indices: 73231497--73231732 Score: 247
Period size: 20 Copynumber: 11.8 Consensus size: 20
73231487 GTGGATCTAC
**
73231497 TGATGGCTTTGTGCTGCTAT
1 TGATGGCTTTGTGCCACTAT
*
73231517 TGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCACTAT
* * *
73231537 TGATGGTTTTTTTCCACTAT
1 TGATGGCTTTGTGCCACTAT
* *
73231557 TGACGTCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
* * *
73231577 TAATGGCTTTGTGCTACTAC
1 TGATGGCTTTGTGCCACTAT
*
73231597 TGATGGCTTTGTGCCGCTAT
1 TGATGGCTTTGTGCCACTAT
* *
73231617 TGACGGCTTTATGCCACTAT
1 TGATGGCTTTGTGCCACTAT
* * ** *
73231637 TAATAGCTTTGTGCTGCTAC
1 TGATGGCTTTGTGCCACTAT
* *
73231657 TGATGGCTTTCTGCCCCTAT
1 TGATGGCTTTGTGCCACTAT
73231677 TGATGGCTTTGTGCCACTAT
1 TGATGGCTTTGTGCCACTAT
* * *
73231697 TGATGGCTTCGTGCTACTAC
1 TGATGGCTTTGTGCCACTAT
*
73231717 TCATGGCTTTGTGCCA
1 TGATGGCTTTGTGCCA
73231733 TATACTGATA
Statistics
Matches: 173, Mismatches: 43, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 173 1.00
ACGTcount: A:0.14, C:0.22, G:0.23, T:0.41
Consensus pattern (20 bp):
TGATGGCTTTGTGCCACTAT
Found at i:73231601 original size:60 final size:60
Alignment explanation
Indices: 73231501--73231732 Score: 275
Period size: 60 Copynumber: 3.9 Consensus size: 60
73231491 ATCTACTGAT
** * ** * * * *
73231501 GGCTTTGTGCTGCTATTGATGGCTTTGTGCCGCTATTGATGGTTTTTTTCCACTATTGAC
1 GGCTTTGTGCCACTATTAATGGCTTTGTGCTACTACTGATGGCTTTCTGCCACTATTGAC
* * *
73231561 GTCTTTGTGCCACTATTAATGGCTTTGTGCTACTACTGATGGCTTTGTGCCGCTATTGAC
1 GGCTTTGTGCCACTATTAATGGCTTTGTGCTACTACTGATGGCTTTCTGCCACTATTGAC
* * * * *
73231621 GGCTTTATGCCACTATTAATAGCTTTGTGCTGCTACTGATGGCTTTCTGCCCCTATTGAT
1 GGCTTTGTGCCACTATTAATGGCTTTGTGCTACTACTGATGGCTTTCTGCCACTATTGAC
* * * *
73231681 GGCTTTGTGCCACTATTGATGGCTTCGTGCTACTACTCATGGCTTTGTGCCA
1 GGCTTTGTGCCACTATTAATGGCTTTGTGCTACTACTGATGGCTTTCTGCCA
73231733 TATACTGATA
Statistics
Matches: 146, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
60 146 1.00
ACGTcount: A:0.14, C:0.22, G:0.23, T:0.41
Consensus pattern (60 bp):
GGCTTTGTGCCACTATTAATGGCTTTGTGCTACTACTGATGGCTTTCTGCCACTATTGAC
Found at i:73231795 original size:26 final size:26
Alignment explanation
Indices: 73231741--73231808 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
73231731 CATATACTGA
* * *
73231741 TACTGGCAGCTTTACTGCGTTACTGT
1 TACTGGCAGCTTTGCTGCGATACTAT
* *
73231767 TACTGGCAGCTTTGCTGTGATATTAT
1 TACTGGCAGCTTTGCTGCGATACTAT
* *
73231793 TACTGCCAGCTATGCT
1 TACTGGCAGCTTTGCT
73231809 ATAATACTGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTGCGATACTAT
Found at i:73236821 original size:29 final size:29
Alignment explanation
Indices: 73236788--73236861 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
73236778 GTGACGAGAT
73236788 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
73236817 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
73236846 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73236862 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:73236877 original size:29 final size:29
Alignment explanation
Indices: 73236845--73236920 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
73236835 CTGGAAATAT
* *
73236845 ATGGCACTAAGTGTGCGAGCTCGAAGGGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
** * * *
73236874 ATGGCACTGTGTGTGCGGGCTTAAATCGC
1 ATGGCACTAAGTGTGCGAGCTCAAAGCGC
73236903 ATGGCACTAAGTGTGCGA
1 ATGGCACTAAGTGTGCGA
73236921 AATCGAGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.36, T:0.22
Consensus pattern (29 bp):
ATGGCACTAAGTGTGCGAGCTCAAAGCGC
Found at i:73236888 original size:58 final size:58
Alignment explanation
Indices: 73236788--73236920 Score: 133
Period size: 58 Copynumber: 2.3 Consensus size: 58
73236778 GTGACGAGAT
* * * * * *
73236788 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAAAT-ATA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCT-GAAATCACA
* * ** * * *
73236846 TGGCACTAAGTGTGCGAGCTCGAAGGGCATGGCACTGTGTGTGCGGGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
73236904 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
73236921 AATCGAGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
57 4 0.07
58 57 0.93
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTCGAAAGACATGGCACTAAGTGTGCAGGCTGAAATCACA
Found at i:73244687 original size:29 final size:29
Alignment explanation
Indices: 73244654--73244785 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
73244644 GTGACGAGAT
*
73244654 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
73244683 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
73244712 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
73244741 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
73244770 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73244786 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:73249788 original size:40 final size:40
Alignment explanation
Indices: 73249733--73249907 Score: 255
Period size: 40 Copynumber: 4.4 Consensus size: 40
73249723 ATGATAACCA
*
73249733 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
73249773 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
73249813 GGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAACCA
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* * *
73249853 AGCTAAGTCCCAAAGGCATTTGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
*
73249892 GGCTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
73249908 TACTTGGTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 15 0.12
40 108 0.88
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:73257799 original size:40 final size:40
Alignment explanation
Indices: 73257744--73257881 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 40
73257734 CGAATGATAA
*
73257744 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
* *
73257784 CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
**
73257824 CCAAGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTATAT
*
73257864 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
73257882 TACTTGGTTT
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.18
40 73 0.82
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
Found at i:73261888 original size:46 final size:46
Alignment explanation
Indices: 73261836--73262059 Score: 256
Period size: 46 Copynumber: 4.8 Consensus size: 46
73261826 GATATTTGGC
73261836 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
73261882 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * * * * * * *
73261928 TGTCCGAACTCGTTCAGTTGAGTCCGAGTTC-GTGGAATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
* *
73261975 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * *
73262021 C-GCCTGAGCTCGTTGAGTTGAGTCCGAGTACGCTTATGG
1 CATCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73262060 GCAGGTTACA
Statistics
Matches: 148, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
45 3 0.02
46 111 0.75
47 33 0.22
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:73265430 original size:68 final size:67
Alignment explanation
Indices: 73265358--73265507 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
73265348 CATCATGTGT
* * * *
73265358 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
73265420 ATGTAG
62 ATGTAG
** * *
73265426 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
73265491 AG
66 AG
73265493 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
73265508 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:73265463 original size:64 final size:64
Alignment explanation
Indices: 73265382--73265565 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
73265372 AGACATTATG
* *
73265382 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
73265446 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
73265511 AA
63 AA
* * * *
73265513 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
73265566 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73266884 original size:26 final size:24
Alignment explanation
Indices: 73266844--73266903 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
73266834 TTATTTCATT
* * *
73266844 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
73266868 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
73266894 AAATAAATAT
1 AAATAAATAT
73266904 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:73266915 original size:22 final size:22
Alignment explanation
Indices: 73266874--73266932 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
73266864 ATAATAAATC
* *
73266874 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
73266894 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
73266916 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
73266933 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:73271647 original size:40 final size:40
Alignment explanation
Indices: 73271520--73271649 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
73271510 ATGCTGGAAA
* *
73271520 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
73271560 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73271600 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73271640 TTATATCCGG
1 TTATATCCGG
73271650 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73279110 original size:40 final size:40
Alignment explanation
Indices: 73278984--73279112 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
73278974 ATGCTGGAAA
* *
73278984 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAG-GG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
73279023 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73279063 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73279103 TTATATCCGG
1 TTATATCCGG
73279113 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
38 3 0.04
39 30 0.39
40 44 0.57
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73282908 original size:40 final size:40
Alignment explanation
Indices: 73282781--73282910 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
73282771 ATGCTGGAAA
* *
73282781 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
73282821 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73282861 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73282901 TTATATCCGG
1 TTATATCCGG
73282911 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73285680 original size:45 final size:46
Alignment explanation
Indices: 73285588--73285803 Score: 167
Period size: 46 Copynumber: 4.8 Consensus size: 46
73285578 TTTGGCCATC
* * * *
73285588 CGAACTCATTGAGTTAAGT-CGAGTTCA-TTATGGATGCCAACATT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAAT
*
73285632 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-GT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAAT
* ** * * ** *
73285677 CGAACTTGTTGAGTTGAGTCCGAGTT-TGTGAAATGTAATTAG-GC-AT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GATGCGAACAAT
* * * *
73285723 CCGAACTCG-TGAGTTGAGCCCGAGTTCACTTATGGATACAAACACT
1 -CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAAT
* * *
73285769 CAAACTCGTTGAGTTGAGTCCTAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73285804 GCGGGTTACA
Statistics
Matches: 134, Mismatches: 28, Indels: 18
0.74 0.16 0.10
Matches are distributed among these distances:
44 20 0.15
45 45 0.34
46 58 0.43
47 11 0.08
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACAAT
Found at i:73287199 original size:40 final size:40
Alignment explanation
Indices: 73287058--73287222 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
73287048 CGGAATATAA
* ** *
73287058 CCGGATATAATCACGTGCACAAATGCCTTC-GGTCTTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
*
73287097 CCGGATAGAATCT-C-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCTCCAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * * *
73287135 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
* * *
73287175 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCTCCAGCACAATTGCCTTCGGG-TCTTAGC
73287215 CCGGATAT
1 CCGGATAT
73287223 CATTCAATTT
Statistics
Matches: 101, Mismatches: 19, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
37 11 0.11
38 19 0.19
39 13 0.13
40 57 0.56
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCTCCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:73291435 original size:71 final size:71
Alignment explanation
Indices: 73291351--73291514 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73291341 CGATTTGTCT
73291351 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
73291416 CTTTCA
66 CTTTCA
73291422 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
73291487 CTTTCA
66 CTTTCA
73291493 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
73291515 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:73291552 original size:71 final size:70
Alignment explanation
Indices: 73291351--73291548 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
73291341 CGATTTGTCT
* * * *
73291351 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
73291416 CTTTCA
65 CTTTCA
* * * *
73291422 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
73291487 CTTTCA
65 CTTTCA
* *
73291493 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
73291549 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:73297871 original size:40 final size:39
Alignment explanation
Indices: 73297826--73297955 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
73297816 CGGAATATAA
73297826 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
73297866 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73297906 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
73297946 CCGGATATAA
1 CCGGATATAA
73297956 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73297970 original size:40 final size:40
Alignment explanation
Indices: 73297842--73297993 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
73297832 ATAACCATGT
* * *
73297842 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
73297882 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
73297922 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
73297962 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
73297994 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:73297976 original size:80 final size:80
Alignment explanation
Indices: 73297842--73297991 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
73297832 ATAACCATGT
*
73297842 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
73297906 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
73297922 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
73297985 CCCGGAT
64 CCCGGAT
73297992 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:73307310 original size:17 final size:18
Alignment explanation
Indices: 73307275--73307313 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
73307265 TTTGTTGGAA
73307275 TTATGTTAGAATATAAGT
1 TTATGTTAGAATATAAGT
73307293 TTATGTTA-AA-AGTAAGT
1 TTATGTTAGAATA-TAAGT
73307310 TTAT
1 TTAT
73307314 ATCCTTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 1 0.05
17 11 0.55
18 8 0.40
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (18 bp):
TTATGTTAGAATATAAGT
Found at i:73312950 original size:5 final size:5
Alignment explanation
Indices: 73312940--73312967 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
73312930 CTAAAAATAA
73312940 TATTT TATTT TATTT TATTT TATTT TAT
1 TATTT TATTT TATTT TATTT TATTT TAT
73312968 GGTTGTATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:73317391 original size:47 final size:47
Alignment explanation
Indices: 73317323--73317539 Score: 160
Period size: 46 Copynumber: 4.7 Consensus size: 47
73317313 GATATGTGCA
* * *
73317323 CCAGTGTTAGACATGTTTGGGACATGCATCGGCCACAT-A-ATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCA-ATGAGACGAGAG
* * *
73317369 CCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTGAGACGAGTG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAATGAGACGAGAG
* * ****
73317417 CTAGTGTAAGACATGTCTGGGACATGCATCGGCC-TTGAGATTTTAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCAATGAGACGAGAG
* * * * * * *
73317463 CCAGTCTCAGACATGTCTGGGACATGCGTCGGCTACT-AGA--TGTG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCAATGAGACGAGAG
* * *
73317507 CTAGTGTAAGATATGTTTGGGACATGCATCGGC
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGC
73317540 ATGGTTACAT
Statistics
Matches: 138, Mismatches: 27, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
44 29 0.21
46 57 0.41
47 30 0.22
48 22 0.16
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.26
Consensus pattern (47 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCCAATGAGACGAGAG
Found at i:73317429 original size:94 final size:91
Alignment explanation
Indices: 73317325--73317539 Score: 240
Period size: 94 Copynumber: 2.3 Consensus size: 91
73317315 TATGTGCACC
* *
73317325 AGTGTTAGACATGTTTGGGACATGCATCGGCCACAT-A-ATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTTTGGGACATGCATCGGCC-CATGAGATGAGAGCCAGTCTAAGA-CATGTCT
*
73317388 GGGACATGGCATCGG-TATTGAGACGAGTGCT
64 GGGACAT-GCATCGGCTACT-AGA--AGTGCT
* * *** *
73317419 AGTGTAAGACATGTCTGGGACATGCATCGG-CCTTGAGATTTTAGCCAGTCTCAGACATGTCTGG
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCCATGAGATGAGAGCCAGTCTAAGACATGTCTGG
* *
73317483 GACATGCGTCGGCTACTAGATGTGCT
66 GACATGCATCGGCTACTAGAAGTGCT
*
73317509 AGTGTAAGATATGTTTGGGACATGCATCGGC
1 AGTGTAAGACATGTTTGGGACATGCATCGGC
73317540 ATGGTTACAT
Statistics
Matches: 104, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
90 33 0.32
92 11 0.11
93 19 0.18
94 41 0.39
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.27
Consensus pattern (91 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCCCATGAGATGAGAGCCAGTCTAAGACATGTCTGG
GACATGCATCGGCTACTAGAAGTGCT
Found at i:73317574 original size:90 final size:92
Alignment explanation
Indices: 73317325--73317583 Score: 219
Period size: 90 Copynumber: 2.8 Consensus size: 92
73317315 TATGTGCACC
* * * *
73317325 AGTGTTAGACATGTTTGGGACATGCATCGGC---CACATAATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGACAT--TG-TAGCCAGTGTAAGACC-TGTC
*
73317387 TGGGACATGGCATCGGTATTGAGACGAGTGCT
62 TGGGACATGGCATCGGTACTGAGAC-AGTGCT
* * * * * *
73317419 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATTTTAGCCAGTCTCAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGACATTGTAGCCAGTGTAAGACCTGTCTGGG
* *
73317484 ACAT-GCGTCGGCTACT-AGA-TGTGCT
66 ACATGGCATCGG-TACTGAGACAGTGCT
* * * * *
73317509 AGTGTAAGATATGTTTGGGACATGCATCGGCATGGTTACA-TGT-GTCAGTGTAAGACCTGTTTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT--TGACATTGTAGCCAGTGTAAGACCTGTCTG
*
73317572 GGACACGGCATC
64 GGACATGGCATC
73317584 AACATAAATG
Statistics
Matches: 133, Mismatches: 25, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
90 55 0.41
91 6 0.05
92 12 0.09
93 15 0.11
94 41 0.31
95 1 0.01
97 3 0.02
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGACATTGTAGCCAGTGTAAGACCTGTCTGGG
ACATGGCATCGGTACTGAGACAGTGCT
Found at i:73320164 original size:40 final size:40
Alignment explanation
Indices: 73320136--73320318 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
73320126 TACTCGTTCG
*
73320136 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGAACA
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGAACA
* * *
73320176 AATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGAACA
* *
73320216 AATGCCTTCGGG-CTTAGCCCGAGAT-TAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCG-GTTATAGTAACTCGAACA
* * *
73320255 AATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAAC-TCGAACA
73320296 AA-GCCTTCGGGACTTAGCCCGGT
1 AATGCCTTCGGGACTTAGCCCGGT
73320319 CATCATTCGA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 77 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGAACA
Found at i:73320245 original size:79 final size:80
Alignment explanation
Indices: 73320136--73320317 Score: 246
Period size: 79 Copynumber: 2.3 Consensus size: 80
73320126 TACTCGTTCG
* *
73320136 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGAACAAATGCCTTCGGGA-CTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGAACAAATGCCTTC-GGATCTTAACCCGGA
*
73320200 TTTAGTAAC-TCGCACC
65 TTTAGTAACTTAGCA-C
* **
73320216 AATGCCTTCGGG-CTTAGCCCGAGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCG-GATATAGTAACTCGAACAAATGCCTTCGGATCTTAACCCGGA
73320279 TTTAGTAACTTAGCAC
65 TTTAGTAACTTAGCAC
*
73320295 AAAGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
73320318 TCATCATTCG
Statistics
Matches: 91, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.67
80 27 0.30
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGAACAAATGCCTTCGGATCTTAACCCGGAT
TTAGTAACTTAGCAC
Found at i:73325813 original size:27 final size:28
Alignment explanation
Indices: 73325756--73325825 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
73325746 AAATTTGTAC
**
73325756 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
73325784 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
73325811 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73325826 GATTCACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:73332782 original size:27 final size:28
Alignment explanation
Indices: 73332725--73332794 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
73332715 AAATTTGTAC
**
73332725 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
* *
73332753 AGCACTATGTGTGCG-AGCTGATTTTAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
73332780 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73332795 GATTCAATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.62
28 14 0.38
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:73338281 original size:40 final size:39
Alignment explanation
Indices: 73338246--73338425 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 39
73338236 TACTCGTTCG
*
73338246 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCACA
* * *
73338286 AATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCG-GTTTAGTAACTCGCACA
* *
73338326 AATGCCTTCGGG-CTTAGCCCGGATTAGTAACTCACACA
1 AATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCACA
* *
73338364 AATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCACA
*
73338405 AA-GCCTTCGGGACTTACCCCG
1 AATGCCTTCGGGACTTAGCCCG
73338426 ATCATCATTC
Statistics
Matches: 119, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
37 2 0.02
38 22 0.18
39 17 0.14
40 66 0.55
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCACA
Found at i:73338371 original size:78 final size:80
Alignment explanation
Indices: 73338246--73338425 Score: 233
Period size: 78 Copynumber: 2.3 Consensus size: 80
73338236 TACTCGTTCG
* * *
73338246 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGAA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGAA
*
73338310 TTTAGTAAC-TCGCACC
65 TTTAGTAACTTAGCA-C
** *
73338326 AATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGAAT
73338389 TTAGTAACTTAGCAC
66 TTAGTAACTTAGCAC
* *
73338404 AAAGCCTTCGGGACTTACCCCG
1 AATGCCTTCGGGACTTAGCCCG
73338426 ATCATCATTC
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 51 0.58
79 22 0.25
80 12 0.14
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGAAT
TTAGTAACTTAGCAC
Found at i:73346305 original size:30 final size:30
Alignment explanation
Indices: 73346271--73346331 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
73346261 TTCTCGAGCC
73346271 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * *
73346301 TAGGGGAAAAATTGTAATTTTGCAAACGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
73346331 T
1 T
73346332 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:73348482 original size:46 final size:46
Alignment explanation
Indices: 73348432--73348603 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
73348422 TGAGCATCCG
* *
73348432 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCCA
* * * * *
73348478 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAA--A--CGTCCA
* * *
73348525 AACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACGCCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCCA
* * *
73348571 AGCTCGTTGATTTGAGTCTGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73348604 GCCGGTTACA
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 56 0.55
47 27 0.27
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACGTCCA
Found at i:73348586 original size:93 final size:93
Alignment explanation
Indices: 73348425--73348595 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
73348415 GGATGGTTGA
* * *
73348425 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCAAACTCGTTGAGT
73348490 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
** * *
73348518 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGTGAACGCCCAAGCTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCAAACTCGTTGAGT
73348583 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
73348596 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCAAACTCGTTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:73352777 original size:40 final size:39
Alignment explanation
Indices: 73352719--73352900 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
73352709 CGTTCAAACA
* * ** * *
73352719 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73352759 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73352799 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73352838 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73352877 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
73352901 CTTGAACATT
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73352830 original size:39 final size:39
Alignment explanation
Indices: 73352749--73352901 Score: 252
Period size: 39 Copynumber: 3.9 Consensus size: 39
73352739 TATGGTAACC
* *
73352749 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73352789 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73352828 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73352867 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
73352902 TTGAACATTC
Statistics
Matches: 106, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73360847 original size:40 final size:39
Alignment explanation
Indices: 73360789--73360970 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
73360779 CTCGTTCAAA
* * ** * *
73360789 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73360829 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
73360869 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
73360908 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73360947 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
73360971 CAATTCGAAC
Statistics
Matches: 128, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
39 88 0.69
40 40 0.31
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73360977 original size:39 final size:39
Alignment explanation
Indices: 73360819--73360973 Score: 256
Period size: 39 Copynumber: 3.9 Consensus size: 39
73360809 TATGGTAACC
* *
73360819 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
73360859 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
73360898 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
73360937 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
73360974 TTCGAACATT
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 91 0.84
40 17 0.16
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:73362510 original size:40 final size:40
Alignment explanation
Indices: 73362383--73362512 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
73362373 TTGCTGGAAA
* * *
73362383 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
73362423 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
73362463 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
73362503 TTATATCCGG
1 TTATATCCGG
73362513 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:73366262 original size:40 final size:39
Alignment explanation
Indices: 73366217--73366346 Score: 181
Period size: 40 Copynumber: 3.3 Consensus size: 39
73366207 ATGCTGGAAA
*
73366217 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* *
73366257 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
73366297 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
73366337 TTATATCCGG
1 TTATATCCGG
73366347 TTGTATTCCG
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 4 0.05
40 76 0.95
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:73369129 original size:46 final size:46
Alignment explanation
Indices: 73369055--73369278 Score: 215
Period size: 46 Copynumber: 4.8 Consensus size: 46
73369045 AATATTTGGC
* * * *
73369055 CATCCGAACTCATTGAGTTAAGTTCGAGTTCACTTATGGATGCCAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* *
73369101 CATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * * * *
73369147 CGTCCGAACTTGTTGAGTTGAGTCCGAG-T---TTGTGAAATGTAATTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A
* *
73369192 GGCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATACAAA
1 --CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * *
73369240 CA-CTCAAACTCGTTGAGTTGAGTCCTAGTTCGCTTATGG
1 CATC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73369279 GCGGGTTACA
Statistics
Matches: 145, Mismatches: 23, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
42 4 0.03
43 4 0.03
45 3 0.02
46 99 0.68
47 25 0.17
48 2 0.01
50 4 0.03
51 4 0.03
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
Found at i:73371251 original size:96 final size:96
Alignment explanation
Indices: 73371087--73371261 Score: 278
Period size: 96 Copynumber: 1.8 Consensus size: 96
73371077 AGGGTAAATT
* * * * *
73371087 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCTCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCA
*
73371152 GACATGGTCTTACATTGGCTCTCATGATGTG
66 GACATGGTCGTACATTGGCTCTCATGATGTG
* *
73371183 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCA
73371248 GACATGGTCGTACA
66 GACATGGTCGTACA
73371262 CTATCACACA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 71 1.00
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCA
GACATGGTCGTACATTGGCTCTCATGATGTG
Found at i:73371272 original size:48 final size:48
Alignment explanation
Indices: 73371086--73371276 Score: 224
Period size: 48 Copynumber: 4.0 Consensus size: 48
73371076 GAGGGTAAAT
* * * *
73371086 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
* * * * *
73371134 TGCCGATGCCATGTCTCAGACATGGTCTTACATTGGCTCTCATGAT--G
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCAA
* *
73371181 TGGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCGCACATATCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
* * *
73371230 TGCCGATGCCATGTCCCAGACATGGTCGTACACTATCACACATATCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
73371277 CCCAAATGTC
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
47 3 0.02
48 116 0.96
49 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA
Found at i:73373980 original size:43 final size:42
Alignment explanation
Indices: 73373874--73373986 Score: 104
Period size: 43 Copynumber: 2.7 Consensus size: 42
73373864 GTGTTATCGT
* ****
73373874 GACCACGTCTGGGATGTTGGCATCGTACTTGATTTTGTGTAA
1 GACCACGTCTGGGAAGTTGGCATCGTACTTGATTACAAGTAA
* *
73373916 GACC-CTGTCTAGGATAG-TGGCATCGATATTTGATTACAAGTAA
1 GACCAC-GTCTGGGA-AGTTGGCATCG-TACTTGATTACAAGTAA
* *
73373959 GACCACGTCTGGGACGTTGGCATTGTAC
1 GACCACGTCTGGGAAGTTGGCATCGTAC
73373987 GAGCTTTTCG
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
41 1 0.02
42 22 0.40
43 31 0.56
44 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (42 bp):
GACCACGTCTGGGAAGTTGGCATCGTACTTGATTACAAGTAA
Found at i:73375554 original size:40 final size:40
Alignment explanation
Indices: 73375484--73375691 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
73375474 CGGGATTTAA
** * *
73375484 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
73375523 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73375563 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73375603 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73375643 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
73375684 CCGGATAT
1 CCGGATAT
73375692 CATTCGAATA
Statistics
Matches: 138, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
39 15 0.11
40 95 0.69
41 28 0.20
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73383696 original size:40 final size:40
Alignment explanation
Indices: 73383626--73383833 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
73383616 CGGGATTTAA
** * *
73383626 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
73383665 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73383705 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73383745 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
73383785 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
73383826 CCGGATAT
1 CCGGATAT
73383834 CATTCGAATA
Statistics
Matches: 138, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
39 15 0.11
40 95 0.69
41 28 0.20
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73387861 original size:17 final size:19
Alignment explanation
Indices: 73387839--73387875 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
73387829 TTGAGATTAA
73387839 TGGG-CCACACGGG-CGTG
1 TGGGCCCACACGGGTCGTG
*
73387856 TGGGCCCACATGGGTCGTG
1 TGGGCCCACACGGGTCGTG
73387875 T
1 T
73387876 TATGGGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 8 0.47
19 5 0.29
ACGTcount: A:0.11, C:0.27, G:0.43, T:0.19
Consensus pattern (19 bp):
TGGGCCCACACGGGTCGTG
Found at i:73402223 original size:2 final size:2
Alignment explanation
Indices: 73402216--73402246 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
73402206 TTTGGCCACA
73402216 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
73402247 CATCTCATAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:73402315 original size:46 final size:46
Alignment explanation
Indices: 73402248--73402337 Score: 126
Period size: 46 Copynumber: 2.0 Consensus size: 46
73402238 ATATATATAC
* * * *
73402248 ATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGACCTTACCACATATCT
* *
73402294 ATCTCATACACATTTCGCATTAGCCATTCGACCTTACCACATAT
1 ATCTCATACACATCTCACATTAGCCATTCGACCTTACCACATAT
73402338 ATACATGTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.34
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGACCTTACCACATATCT
Found at i:73402376 original size:47 final size:47
Alignment explanation
Indices: 73402311--73402573 Score: 463
Period size: 47 Copynumber: 5.6 Consensus size: 47
73402301 ACACATTTCG
* * * * **
73402311 CATTAGCCATTCGACCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
73402358 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
73402405 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
73402452 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
73402499 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
73402546 CATTGGCCATTCGGCCTTATCACGCATA
1 CATTGGCCATTCGGCCTTATCACACATA
73402574 TATATACAGG
Statistics
Matches: 209, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 209 1.00
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:73402636 original size:141 final size:138
Alignment explanation
Indices: 73402342--73402628 Score: 357
Period size: 141 Copynumber: 2.1 Consensus size: 138
73402332 ACATATATAC
73402342 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACA
1 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACA
* * ** * *
73402407 TTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
66 TTGGCCATTCGGCCTTATCACACATACACAGGTTCACATTCATCACATT-GAAAAT--GCCTAAT
* **
73402472 CACACATACGC
128 CACAAATACAA
73402483 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACA
1 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACA
* *
73402548 TTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACA-T-AAAAT-CCTAA
66 TTGGCCATTCGGCCTTATCA--C--ACATACACAGGTTCACATTCATCACATTGAAAATGCCT-A
*
73402610 ATCA-AAATATAA
126 ATCACAAATACAA
*
73402622 ATTTTCA
1 ATGTTCA
73402629 TGTATTCACA
Statistics
Matches: 128, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
139 13 0.10
140 4 0.03
141 85 0.66
142 2 0.02
143 1 0.01
144 1 0.01
145 22 0.17
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (138 bp):
ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACA
TTGGCCATTCGGCCTTATCACACATACACAGGTTCACATTCATCACATTGAAAATGCCTAATCAC
AAATACAA
Found at i:73408174 original size:40 final size:40
Alignment explanation
Indices: 73408119--73408340 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
73408109 TATTCGAATG
73408119 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
73408159 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
73408199 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
73408239 ATATACGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
73408279 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
73408319 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
73408341 TATTGGGTTT
Statistics
Matches: 169, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 152 0.90
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:73415215 original size:40 final size:39
Alignment explanation
Indices: 73415170--73415299 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
73415160 CGGAATATAA
73415170 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
73415210 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
73415250 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
73415290 CCGGATATAA
1 CCGGATATAA
73415300 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:73415314 original size:40 final size:40
Alignment explanation
Indices: 73415186--73415337 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
73415176 ATAACCATGT
* * *
73415186 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
73415226 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
73415266 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
73415306 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
73415338 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:73415320 original size:80 final size:80
Alignment explanation
Indices: 73415186--73415335 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
73415176 ATAACCATGT
*
73415186 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
73415250 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
73415266 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
73415329 CCCGGAT
64 CCCGGAT
73415336 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:73422373 original size:40 final size:39
Alignment explanation
Indices: 73422328--73422455 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 39
73422318 CGGAATATAA
*
73422328 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAATTGCCTTCGGGTCTTAGC
** *
73422368 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAATTGCCTTCGGGTCTTAGC
* * * *
73422408 CCGGATATAATTTC-CAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAA--TCACTGCACAATTGCCTTCGGGTCTTAGC
73422448 CCGGATAT
1 CCGGATAT
73422456 CATTCAATTT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 71 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAATTGCCTTCGGGTCTTAGC
Found at i:73430298 original size:40 final size:40
Alignment explanation
Indices: 73430253--73430419 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
73430243 CGGAATATAA
73430253 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73430293 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
73430333 CCGGATATAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
73430372 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
73430412 CCGGATAT
1 CCGGATAT
73430420 CATTCAATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 32 0.30
40 73 0.70
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73433517 original size:42 final size:42
Alignment explanation
Indices: 73433466--73433554 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
73433456 CTCGAACAAT
* * *
73433466 TCAATGAGCTCGGATGCCACATATATCATGAACCTGAACCAC
1 TCAACGAGCTCGGATGCCACATATATCACGAACCCGAACCAC
*
73433508 TCAACGAGCTCGGATGCCACATATATCACGAACCCGGACCAC
1 TCAACGAGCTCGGATGCCACATATATCACGAACCCGAACCAC
73433550 TCAAC
1 TCAAC
73433555 AAGTTTGGAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.18
Consensus pattern (42 bp):
TCAACGAGCTCGGATGCCACATATATCACGAACCCGAACCAC
Found at i:73436576 original size:12 final size:12
Alignment explanation
Indices: 73436559--73436590 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
73436549 CTTGTGCGCC
*
73436559 AGGCCGTGTGCT
1 AGGCCGTGTACT
73436571 AGGCCGTGTACT
1 AGGCCGTGTACT
73436583 AGGCCGTG
1 AGGCCGTG
73436591 CATAACATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.25, G:0.41, T:0.22
Consensus pattern (12 bp):
AGGCCGTGTACT
Found at i:73438491 original size:42 final size:43
Alignment explanation
Indices: 73438444--73438599 Score: 174
Period size: 42 Copynumber: 3.7 Consensus size: 43
73438434 TACCATACCA
* * * *
73438444 ATGCCATATCCCAAATATAGTCTTATACAGGA-TCTCGTATCG
1 ATGCCATATCCCAAATATGGTCTTACACAGAAGTCTCGTATAG
* * * *
73438486 ATGCCAATAGCCCAACTATGGTCTTACA-AAAAGTCTCGTATTG
1 ATGCC-ATATCCCAAATATGGTCTTACACAGAAGTCTCGTATAG
* * *
73438529 ATGCCATATCCCAGATATGGTCTTACAC-GAAGCCTCATATAG
1 ATGCCATATCCCAAATATGGTCTTACACAGAAGTCTCGTATAG
*
73438571 ATGCCATATCCCAGATATGGTCTTACACA
1 ATGCCATATCCCAAATATGGTCTTACACA
73438600 TAGTCTTAGT
Statistics
Matches: 96, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
42 64 0.67
43 32 0.33
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCATATCCCAAATATGGTCTTACACAGAAGTCTCGTATAG
Found at i:73438878 original size:14 final size:14
Alignment explanation
Indices: 73438859--73438901 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
73438849 CGTTTCTCTT
73438859 AATTTATAATAGTA
1 AATTTATAATAGTA
73438873 AA-TT-TAAT--T-
1 AATTTATAATAGTA
73438882 AATTTATAATAGTA
1 AATTTATAATAGTA
73438896 AATTTA
1 AATTTA
73438902 ACTCATTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 10
0.71 0.00 0.29
Matches are distributed among these distances:
9 2 0.08
10 3 0.12
11 4 0.17
12 4 0.17
13 3 0.12
14 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (14 bp):
AATTTATAATAGTA
Found at i:73438887 original size:23 final size:23
Alignment explanation
Indices: 73438857--73438902 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
73438847 CTCGTTTCTC
73438857 TTAATTTATAATAGTAAATTTAA
1 TTAATTTATAATAGTAAATTTAA
73438880 TTAATTTATAATAGTAAATTTAA
1 TTAATTTATAATAGTAAATTTAA
73438903 CTCATTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (23 bp):
TTAATTTATAATAGTAAATTTAA
Found at i:73440660 original size:27 final size:27
Alignment explanation
Indices: 73440622--73440676 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
73440612 TACTAAAGTT
*
73440622 CAACTTTGTACCTAGAGCCTCTTATAA
1 CAACTTTGTACCCAGAGCCTCTTATAA
73440649 CAACTTTGTACCCAGAGCCTCTTATAA
1 CAACTTTGTACCCAGAGCCTCTTATAA
73440676 C
1 C
73440677 TTCTTCCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (27 bp):
CAACTTTGTACCCAGAGCCTCTTATAA
Found at i:73444502 original size:50 final size:50
Alignment explanation
Indices: 73444446--73444605 Score: 125
Period size: 50 Copynumber: 3.1 Consensus size: 50
73444436 ACACTCTAAT
73444446 CACAAACTCAATAAACTCAATAGGCAAGCTCTTACTACTTACCAATTTCA
1 CACAAACTCAATAAACTCAATAGGCAAGCTCTTACTACTTACCAATTTCA
* ** ** * * *
73444496 CACAAACAT-AAGAATGGGTCAATCTAGGATCAA--T-TTA-GGCTTGA-CACTCTAA
1 CACAAAC-TCAATAA--ACTCAA--TAGG--CAAGCTCTTACTACTT-ACCAATTTCA
73444548 TCACAAACTCAATAAACTCAATAGGCAAGCTCTTACTACTTACCAATTTCA
1 -CACAAACTCAATAAACTCAATAGGCAAGCTCTTACTACTTACCAATTTCA
73444599 CACAAAC
1 CACAAAC
73444606 ATAAGAATGG
Statistics
Matches: 79, Mismatches: 16, Indels: 30
0.63 0.13 0.24
Matches are distributed among these distances:
47 3 0.04
49 5 0.06
50 22 0.28
51 13 0.16
52 13 0.16
53 15 0.19
54 5 0.06
56 3 0.04
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.25
Consensus pattern (50 bp):
CACAAACTCAATAAACTCAATAGGCAAGCTCTTACTACTTACCAATTTCA
Found at i:73444612 original size:103 final size:103
Alignment explanation
Indices: 73444433--73444632 Score: 400
Period size: 103 Copynumber: 1.9 Consensus size: 103
73444423 CCTAAAGGGT
73444433 TTGACACTCTAATCACAAACTCAATAAACTCAATAGGCAAGCTCTTACTACTTACCAATTTCACA
1 TTGACACTCTAATCACAAACTCAATAAACTCAATAGGCAAGCTCTTACTACTTACCAATTTCACA
73444498 CAAACATAAGAATGGGTCAATCTAGGATCAATTTAGGC
66 CAAACATAAGAATGGGTCAATCTAGGATCAATTTAGGC
73444536 TTGACACTCTAATCACAAACTCAATAAACTCAATAGGCAAGCTCTTACTACTTACCAATTTCACA
1 TTGACACTCTAATCACAAACTCAATAAACTCAATAGGCAAGCTCTTACTACTTACCAATTTCACA
73444601 CAAACATAAGAATGGGTCAATCTAGGATCAAT
66 CAAACATAAGAATGGGTCAATCTAGGATCAAT
73444633 CAATGCAACT
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
103 97 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (103 bp):
TTGACACTCTAATCACAAACTCAATAAACTCAATAGGCAAGCTCTTACTACTTACCAATTTCACA
CAAACATAAGAATGGGTCAATCTAGGATCAATTTAGGC
Found at i:73448284 original size:43 final size:43
Alignment explanation
Indices: 73448219--73448301 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
73448209 CCCAGATGTT
* * * *
73448219 ATCACATATCGATGCCACTGTCCCAGACAGGGTTTTATACGGA
1 ATCACATAACGATGCCAATGTCCAAGACAGGGTCTTATACGGA
* *
73448262 ATCATATAACGATGCCAATGTCCAAGACATGGTCTTATAC
1 ATCACATAACGATGCCAATGTCCAAGACAGGGTCTTATAC
73448302 TATTCCTAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
ATCACATAACGATGCCAATGTCCAAGACAGGGTCTTATACGGA
Done.