Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr08 129432109
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129432109
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 350 characters in sequence are not A, C, G, or T
File 242 of 425
Found at i:74149970 original size:31 final size:32
Alignment explanation
Indices: 74149914--74149975 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
74149904 TTATTTAAAG
*
74149914 TTTTATTACTTTTATTTGTTTATTTACTTATT
1 TTTTATTACTTGTATTTGTTTATTTACTTATT
*
74149946 TTTTATTATCTTGT-TTT-TTTATTTATTTAT
1 TTTTATTA-CTTGTATTTGTTTATTTACTTAT
74149976 CTTATTGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 12 0.44
32 11 0.41
33 4 0.15
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (32 bp):
TTTTATTACTTGTATTTGTTTATTTACTTATT
Found at i:74149987 original size:20 final size:19
Alignment explanation
Indices: 74149925--74150018 Score: 61
Period size: 20 Copynumber: 4.9 Consensus size: 19
74149915 TTTATTACTT
*
74149925 TTATTTGTTTAT-TTACTTA
1 TTATTTATTTATCTTA-TTA
* * *
74149944 TTTTTTA-TTATCTTGTTTTT
1 TTATTTATTTATC-T-TATTA
74149964 TTATTTATTTATCTTATTGA
1 TTATTTATTTATCTTATT-A
74149984 TTATTT-TTTACTCTTATTA
1 TTATTTATTTA-TCTTATTA
* *
74150003 TT-GTTATTTATATTAT
1 TTATTTATTTATCTTAT
74150019 CGCATTTATT
Statistics
Matches: 59, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
18 11 0.19
19 19 0.32
20 23 0.39
21 6 0.10
ACGTcount: A:0.20, C:0.05, G:0.04, T:0.70
Consensus pattern (19 bp):
TTATTTATTTATCTTATTA
Found at i:74156917 original size:19 final size:19
Alignment explanation
Indices: 74156893--74156939 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
74156883 AATGCCTCTT
*
74156893 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTGCAT-CA
74156912 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
74156931 TATGCATTA
1 TTTGCATTA
74156940 AACTTCACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:74167342 original size:40 final size:40
Alignment explanation
Indices: 74167249--74167466 Score: 266
Period size: 40 Copynumber: 5.5 Consensus size: 40
74167239 AAGCCAAGTA
* * *
74167249 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
74167287 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
74167327 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
74167367 CCTTCGGGACTTAGCCTGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
74167407 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
74167448 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
74167467 TTATCATCCA
Statistics
Matches: 157, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 12 0.08
39 19 0.12
40 99 0.63
41 22 0.14
42 5 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:74169352 original size:40 final size:40
Alignment explanation
Indices: 74169225--74169354 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
74169215 ATGCTGGAAA
* *
74169225 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
74169265 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
74169305 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
74169345 TTATATCCGG
1 TTATATCCGG
74169355 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:74172968 original size:46 final size:45
Alignment explanation
Indices: 74172816--74173228 Score: 214
Period size: 47 Copynumber: 8.8 Consensus size: 45
74172806 TTATTTGTGT
* *
74172816 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCA-GATGAGA
* * * * *
74172862 GCCAATGTAAGATCATGTCTGGGACATGGCACCGGCATTAAGATGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CTCAGATGAGA
* *
74172910 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCGAGATGTA-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTC-AGATG-AGA
* ** *
74172956 GCCAGTGTAAGACATGCCTGGGACATGCATC-GGTTACA-A-GATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCT-CAGATGA-GA
** * * ** *
74173000 GTTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACAAATATGTGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CTCAGA--TGAGA
* * * * *
74173050 GCTAGTGTAAAACCATGTCTGGGACATGGCGTCGGCCTC-GATTTCGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAGA--T-GAGA
* * * *
74173099 GTCAGTGTAAGACCATGTCTGGGACATGGCATCA-ACT-TGATGGACAA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAGAT-GA-GA
* * *
74173146 GCCAGTGTAAGACCATGTTTGGGACATGGCATC-GACT-TGATGGACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCAGAT-GA-GA
*
74173193 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGC
74173229 ATTATACCCT
Statistics
Matches: 294, Mismatches: 52, Indels: 40
0.76 0.13 0.10
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 11 0.04
45 16 0.05
46 59 0.20
47 106 0.36
48 31 0.11
49 34 0.12
50 33 0.11
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAGATGAGA
Found at i:74173169 original size:47 final size:47
Alignment explanation
Indices: 74173101--74173226 Score: 216
Period size: 47 Copynumber: 2.7 Consensus size: 47
74173091 TTTCGATAGT
74173101 CAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATGGACAAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATGGACAAGC
* * *
74173148 CAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGATGGACGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATGGACAAGC
*
74173195 TAGTGTAAGACCATGTCTGGGACATGGCATCA
1 CAGTGTAAGACCATGTCTGGGACATGGCATCA
74173227 GCATTATACC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATGGACAAGC
Found at i:74174296 original size:20 final size:21
Alignment explanation
Indices: 74174258--74174296 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74174248 TTATAATGAA
74174258 CACACGGGCGTGTTACCCTTT
1 CACACGGGCGTGTTACCCTTT
*
74174279 CACACGGGCTTG-TACCCT
1 CACACGGGCGTGTTACCCT
74174297 ATTTCCAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.36, G:0.23, T:0.26
Consensus pattern (21 bp):
CACACGGGCGTGTTACCCTTT
Found at i:74175051 original size:46 final size:46
Alignment explanation
Indices: 74174996--74175257 Score: 224
Period size: 46 Copynumber: 5.6 Consensus size: 46
74174986 AGCAGTAAAC
*
74174996 CTTATCTCCCTGAAGTTGCAATGGAGCAGGTTAAAAATAAACAAAT
1 CTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATAAACAAAT
* * * *
74175042 CTTATCTCCCTGAAATTACAATGGAGCAGATTAAAAATAGGCTACGAAT
1 CTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATA---AACAAAT
* ****
74175091 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCTACAAAT
1 CTTATCTCCCTGAAGTTGCAATGGAGCAGATT-AA-A-AATAAACAAAT
* ** ** * *** *
74175140 ATTATCTCTTTGAAGTTTTAGTGGAGCAGATT--AAAGCCACAAAC
1 CTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATAAACAAAT
* * *
74175184 CTTATCTCTCTGAAGTTGCAGTGGAGCA-AGTTAAAATTAAACAAAT
1 CTTATCTCCCTGAAGTTGCAATGGAGCAGA-TTAAAAATAAACAAAT
*
74175230 CTTATCTCTCTGAAGTTGCAATGGAGCA
1 CTTATCTCCCTGAAGTTGCAATGGAGCA
74175258 TATTGAAGAC
Statistics
Matches: 177, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
43 1 0.01
44 34 0.19
45 1 0.01
46 70 0.40
49 67 0.38
50 2 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (46 bp):
CTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATAAACAAAT
Found at i:74175116 original size:49 final size:48
Alignment explanation
Indices: 74174946--74175257 Score: 236
Period size: 49 Copynumber: 6.7 Consensus size: 48
74174936 GCTACAGGTT
* * * * *
74174946 ACAAATCTTATCTCCCTAAAATTGCAGTGGAACAAATT---AA-AGCA
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATAGCA
** * *
74174990 GTAAACCTTATCTCCCTGAAGTTGCAATGGAGCAGGTTAAAAATA--A
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATAGCA
* * *
74175036 ACAAATCTTATCTCCCTGAAATTACAATGGAGCAGATTAAAAATAGGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATA-GCA
* * * * * *
74175085 ACGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGACAGGCT
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATA-GCA
* ** ** * *
74175134 ACAAATATTATCTCTTTGAAGTTTTAGTGGAGCAGATT---AA-AGCC
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATAGCA
* * * *
74175178 ACAAACCTTATCTCTCTGAAGTTGCAGTGGAGCA-AGTTAAAATTA--A
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGA-TTAAAAATAGCA
*
74175224 ACAAATCTTATCTCTCTGAAGTTGCAATGGAGCA
1 ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCA
74175258 TATTGAAGAC
Statistics
Matches: 216, Mismatches: 40, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
43 1 0.00
44 62 0.29
45 1 0.00
46 73 0.34
47 3 0.01
48 2 0.01
49 74 0.34
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (48 bp):
ACAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAAATAGCA
Found at i:74177307 original size:47 final size:47
Alignment explanation
Indices: 74177150--74177373 Score: 196
Period size: 47 Copynumber: 4.8 Consensus size: 47
74177140 GTTATTGTGG
* *
74177150 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAT-A-TTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCATGAGATAT-A-A
* * * * * *
74177196 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCA-AAACGAGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAGATA-TA-A
74177244 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGAT-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATGAGAT-ATAA
* * * *
74177290 GTTGAG-GTAAGACCATGTGTGAGACATGGCATCGACATGAGATATAA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAGATATAA
*
74177337 GCTAGTGTAAGACCGTGTCTGGGACATGGCATCGGCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
74177374 CTTTACCCAC
Statistics
Matches: 144, Mismatches: 22, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
46 30 0.21
47 86 0.60
48 27 0.19
49 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAGATATAA
Found at i:74177316 original size:94 final size:94
Alignment explanation
Indices: 74177150--74177321 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 94
74177140 GTTATTGTGG
*
74177150 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATGATGAGAGCCAGTGTAAGACCATGTC
*
74177215 TGGGACATGGCATTGGCATCAAAACGAGT
66 TGAGACATGGCATTGGCATCAAAACGAGT
* * * **
74177244 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGA-GATGATAGTTGAG-GTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT-ATGATGAGAG-CCAGTGTAAGACCATG
*
74177307 TGTGAGACATGGCAT
64 TCTGAGACATGGCAT
74177322 CGACATGAGA
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
94 65 0.96
95 3 0.04
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATGATGAGAGCCAGTGTAAGACCATGTC
TGAGACATGGCATTGGCATCAAAACGAGT
Found at i:74178220 original size:47 final size:47
Alignment explanation
Indices: 74178063--74178286 Score: 221
Period size: 47 Copynumber: 4.8 Consensus size: 47
74178053 GTTATTGTGG
* * *
74178063 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAT-ATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCATGA-GATGATA
* * * *
74178109 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAAACGAGT-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-GAGATGA-TA
74178157 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATGAGATGATA
* * *
74178203 GTTGAG-GTAAGACCATGTGTGGGACATGGCATCGACATGAGAT-ATAA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAGATGAT-A
* *
74178250 GCTAGTGTAAGACCGTGCCTGGGACATGGCATCGGCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
74178287 CTTTACCCAC
Statistics
Matches: 149, Mismatches: 17, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
45 1 0.01
46 35 0.23
47 86 0.58
48 26 0.17
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAGATGATA
Found at i:74178226 original size:94 final size:94
Alignment explanation
Indices: 74178063--74178236 Score: 253
Period size: 94 Copynumber: 1.9 Consensus size: 94
74178053 GTTATTGTGG
*
74178063 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATGATGAGAGCCAGTGTAAGACCATGTC
74178128 TGGGACATGGCATCGGCATCAAAACGAGT
66 TGGGACATGGCATCGGCATCAAAACGAGT
* * * **
74178157 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGA-GATGATAGTTGAG-GTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT-ATGATGAGAG-CCAGTGTAAGACCATG
*
74178220 TGTGGGACATGGCATCG
64 TCTGGGACATGGCATCG
74178237 ACATGAGATA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
94 68 0.96
95 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATATGATGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCATCAAAACGAGT
Found at i:74178291 original size:913 final size:913
Alignment explanation
Indices: 74176524--74178346 Score: 3574
Period size: 913 Copynumber: 2.0 Consensus size: 913
74176514 CCATGAGAGT
74176524 ATTTAGAGTGTTTTCTAAAATTTTATGGAAGAAAATGAGTCTTGGGTGTCTTATAAACAACTTTT
1 ATTTAGAGTGTTTTCTAAAATTTTATGGAAGAAAATGAGTCTTGGGTGTCTTATAAACAACTTTT
*
74176589 GTGAAAGGTGTTAGCATGAAAACACCTAATAGGACTAATGTGCATAGTTTGTAAAATAGATAATA
66 GTGAAAGATGTTAGCATGAAAACACCTAATAGGACTAATGTGCATAGTTTGTAAAATAGATAATA
74176654 AATGTGTGAAATAGTGGGAATTTGGAGTTTCTATAAGAGTCAAATAGATTTGGCTAGTCTTGAGA
131 AATGTGTGAAATAGTGGGAATTTGGAGTTTCTATAAGAGTCAAATAGATTTGGCTAGTCTTGAGA
74176719 AATAAAGAAATTTGATAAAAAAAATCGATTTTCGGGCCGAGGGGTAAAATGGTCATTTTGCAAAA
196 AATAAAGAAATTTGATAAAAAAAATCGATTTTCGGGCCGAGGGGTAAAATGGTCATTTTGCAAAA
74176784 GTCTAGGGGCAAAATGGTCATTTAGTCCAATTGTGAAGGTTGAGTGCTTATGTTGATAAAGTGAC
261 GTCTAGGGGCAAAATGGTCATTTAGTCCAATTGTGAAGGTTGAGTGCTTATGTTGATAAAGTGAC
*
74176849 TTAATAAGTGCATTTTGTTATTACAGATCAAGAAATACCGAGTCTAAACCTAGATCGGGGGAAAG
326 TTAATAAGTGCATTTTGTTATTACAGATCAAGAAATACCGAGTCTAAACCTAGATCGGAGGAAAG
74176914 CCAAGCAAACCGATTAAATCGGCTAGTCGCCACATTTTGTAAACCGAGGTAAGTTGTGTGTAAAT
391 CCAAGCAAACCGATTAAATCGGCTAGTCGCCACATTTTGTAAACCGAGGTAAGTTGTGTGTAAAT
74176979 AGTACAACTACATCACTAATGTATATGTGTTGAATTGCATTTGAATTAACATAGCATGAATTTCT
456 AGTACAACTACATCACTAATGTATATGTGTTGAATTGCATTTGAATTAACATAGCATGAATTTCT
*
74177044 TGATTTTGAAGTTGAGAAAGTATGATGATAATAGAGATAGTAGAGTTCCCGTTTGAACCTAGGAA
521 TAATTTTGAAGTTGAGAAAGTATGATGATAATAGAGATAGTAGAGTTCCCGTTTGAACCTAGGAA
74177109 ATATATTTGATATTCATGCGATGACATATGGGTTATTGTGGGCTAGTGTAAGACATGTCTGGGAC
586 ATATATTTGATATTCATGCGATGACATATGGGTTATTGTGGGCTAGTGTAAGACATGTCTGGGAC
*
74177174 ATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCAAAA
651 ATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAAA
74177239 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGATAGTTGAGGTAAGACC
716 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGATAGTTGAGGTAAGACC
*
74177304 ATGTGTGAGACATGGCATCGACATGAGATATAAGCTAGTGTAAGACCGTGTCTGGGACATGGCAT
781 ATGTGTGAGACATGGCATCGACATGAGATATAAGCTAGTGTAAGACCGTGCCTGGGACATGGCAT
74177369 CGGCACTTTACCCACATTTGAGGTTTAATGAATATCCGATAGTATTTTGAATGGTTCAACAGTGA
846 CGGCACTTTACCCACATTTGAGGTTTAATGAATATCCGATAGTATTTTGAATGGTTCAACAGTGA
74177434 TGA
911 TGA
74177437 ATTTAGAGTGTTTTCTAAAATTTTATGGAAGAAAATGAGTCTTGGGTGTCTTATAAACAACTTTT
1 ATTTAGAGTGTTTTCTAAAATTTTATGGAAGAAAATGAGTCTTGGGTGTCTTATAAACAACTTTT
74177502 GTGAAAGATGTTAGCATGAAAACACCTAATAGGACTAATGTGCATAGTTTGTAAAATAGATAATA
66 GTGAAAGATGTTAGCATGAAAACACCTAATAGGACTAATGTGCATAGTTTGTAAAATAGATAATA
74177567 AATGTGTGAAATAGTGGGAATTTGGAGTTTCTATAAGAGTCAAATAGATTTGGCTAGTCTTGAGA
131 AATGTGTGAAATAGTGGGAATTTGGAGTTTCTATAAGAGTCAAATAGATTTGGCTAGTCTTGAGA
*
74177632 AATAAAGAAATTTGATAAAAAAAATCGATTTTCGGGTCGAGGGGTAAAATGGTCATTTTGCAAAA
196 AATAAAGAAATTTGATAAAAAAAATCGATTTTCGGGCCGAGGGGTAAAATGGTCATTTTGCAAAA
74177697 GTCTAGGGGCAAAATGGTCATTTAGTCCAATTGTGAAGGTTGAGTGCTTATGTTGATAAAGTGAC
261 GTCTAGGGGCAAAATGGTCATTTAGTCCAATTGTGAAGGTTGAGTGCTTATGTTGATAAAGTGAC
74177762 TTAATAAGTGCATTTTGTTATTACAGATCAAGAAATACCGAGTCTAAACCTAGATCGGAGGAAAG
326 TTAATAAGTGCATTTTGTTATTACAGATCAAGAAATACCGAGTCTAAACCTAGATCGGAGGAAAG
74177827 CCAAGCAAACCGATTAAATCGGCTAGTCGCCACATTTTGTAAACCGAGGTAAGTTGTGTGTAAAT
391 CCAAGCAAACCGATTAAATCGGCTAGTCGCCACATTTTGTAAACCGAGGTAAGTTGTGTGTAAAT
*
74177892 AGTACAACTACATCACTAATGTATATGTGTTGAATTGCATTTGAATTAATATAGCATGAATTTCT
456 AGTACAACTACATCACTAATGTATATGTGTTGAATTGCATTTGAATTAACATAGCATGAATTTCT
74177957 TAATTTTGAAGTTGAGAAAGTATGATGATAATAGAGATAGTAGAGTTCCCGTTTGAACCTAGGAA
521 TAATTTTGAAGTTGAGAAAGTATGATGATAATAGAGATAGTAGAGTTCCCGTTTGAACCTAGGAA
74178022 ATATATTTGATATTCATGCGATGACATATGGGTTATTGTGGGCTAGTGTAAGACATGTCTGGGAC
586 ATATATTTGATATTCATGCGATGACATATGGGTTATTGTGGGCTAGTGTAAGACATGTCTGGGAC
74178087 ATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAAA
651 ATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAAA
74178152 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGATAGTTGAGGTAAGACC
716 CGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGATAGTTGAGGTAAGACC
*
74178217 ATGTGTGGGACATGGCATCGACATGAGATATAAGCTAGTGTAAGACCGTGCCTGGGACATGGCAT
781 ATGTGTGAGACATGGCATCGACATGAGATATAAGCTAGTGTAAGACCGTGCCTGGGACATGGCAT
74178282 CGGCACTTTACCCACATTTGAGGTTTAATGAATATCCGATAGTATTTTGAATGGTTCAACAGTGA
846 CGGCACTTTACCCACATTTGAGGTTTAATGAATATCCGATAGTATTTTGAATGGTTCAACAGTGA
74178347 ATAGTATGAC
Statistics
Matches: 902, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
913 902 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (913 bp):
ATTTAGAGTGTTTTCTAAAATTTTATGGAAGAAAATGAGTCTTGGGTGTCTTATAAACAACTTTT
GTGAAAGATGTTAGCATGAAAACACCTAATAGGACTAATGTGCATAGTTTGTAAAATAGATAATA
AATGTGTGAAATAGTGGGAATTTGGAGTTTCTATAAGAGTCAAATAGATTTGGCTAGTCTTGAGA
AATAAAGAAATTTGATAAAAAAAATCGATTTTCGGGCCGAGGGGTAAAATGGTCATTTTGCAAAA
GTCTAGGGGCAAAATGGTCATTTAGTCCAATTGTGAAGGTTGAGTGCTTATGTTGATAAAGTGAC
TTAATAAGTGCATTTTGTTATTACAGATCAAGAAATACCGAGTCTAAACCTAGATCGGAGGAAAG
CCAAGCAAACCGATTAAATCGGCTAGTCGCCACATTTTGTAAACCGAGGTAAGTTGTGTGTAAAT
AGTACAACTACATCACTAATGTATATGTGTTGAATTGCATTTGAATTAACATAGCATGAATTTCT
TAATTTTGAAGTTGAGAAAGTATGATGATAATAGAGATAGTAGAGTTCCCGTTTGAACCTAGGAA
ATATATTTGATATTCATGCGATGACATATGGGTTATTGTGGGCTAGTGTAAGACATGTCTGGGAC
ATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAAA
CGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGATAGTTGAGGTAAGACC
ATGTGTGAGACATGGCATCGACATGAGATATAAGCTAGTGTAAGACCGTGCCTGGGACATGGCAT
CGGCACTTTACCCACATTTGAGGTTTAATGAATATCCGATAGTATTTTGAATGGTTCAACAGTGA
TGA
Found at i:74179800 original size:5 final size:5
Alignment explanation
Indices: 74179790--74179821 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
74179780 TTTTAAATTC
74179790 TTTAT TTTAT TTTAT TTTAT TTTA- TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
74179822 TTTAGGGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:74180512 original size:3 final size:3
Alignment explanation
Indices: 74180506--74180564 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
74180496 GTTTATTTAC
74180506 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
74180554 TTA TTA TTA TT
1 TTA TTA TTA TT
74180565 TTCTAAATAG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:74180835 original size:35 final size:32
Alignment explanation
Indices: 74180764--74180842 Score: 81
Period size: 35 Copynumber: 2.4 Consensus size: 32
74180754 TTTAAACTTT
* **
74180764 TTATTAGTTTTATTTGTTTATTTACTTATTTT
1 TTATTAGTTTTATTTATTTATTTACTTATTGA
*
74180796 TTATTAGCTTGTTATTTATTTATTTTTCTTATTGA
1 TTATTAG-TT-TTATTTATTTA-TTTACTTATTGA
74180831 TTATT--TTTTATT
1 TTATTAGTTTTATT
74180843 CTTATTATTG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
31 5 0.12
32 9 0.22
33 2 0.05
34 10 0.25
35 14 0.35
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.71
Consensus pattern (32 bp):
TTATTAGTTTTATTTATTTATTTACTTATTGA
Found at i:74180836 original size:20 final size:20
Alignment explanation
Indices: 74180789--74180848 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 20
74180779 GTTTATTTAC
*
74180789 TTATTTTTTATTAGCTTGTT-A
1 TTATTTTTTATT--CTTATTGA
74180810 TTTATTTATTT-TTCTTATTGA
1 -TTATTT-TTTATTCTTATTGA
74180831 TTATTTTTTATTCTTATT
1 TTATTTTTTATTCTTATT
74180849 ATTGTTATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
19 3 0.09
20 19 0.56
21 1 0.03
22 8 0.24
23 3 0.09
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.72
Consensus pattern (20 bp):
TTATTTTTTATTCTTATTGA
Found at i:74180857 original size:42 final size:41
Alignment explanation
Indices: 74180772--74180860 Score: 101
Period size: 42 Copynumber: 2.1 Consensus size: 41
74180762 TTTTATTAGT
* *
74180772 TTTATTTGTTTATTTACTTATTTTTTATTAGCTTGTTATTTA
1 TTTATTTGTTTATTGACTTATTTTTTATTA-CTTATTATTTA
*
74180814 TTTATTTTTCTTATTGA-TTATTTTTTATT-CTTATTATTGTTA
1 TTTATTTGT-TTATTGACTTATTTTTTATTACTTATTA-T-TTA
74180856 TTTAT
1 TTTAT
74180861 ATTATCGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
40 6 0.15
41 1 0.02
42 28 0.68
43 6 0.15
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.71
Consensus pattern (41 bp):
TTTATTTGTTTATTGACTTATTTTTTATTACTTATTATTTA
Found at i:74189401 original size:16 final size:17
Alignment explanation
Indices: 74189361--74189402 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
74189351 AAATTAAAAA
74189361 ATATTTTTTATCTTTTT
1 ATATTTTTTATCTTTTT
74189378 ATACTTTTATTAT-TTTTT
1 ATA-TTTT-TTATCTTTTT
74189396 AT-TTTTT
1 ATATTTTT
74189403 AAATTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.04
16 4 0.17
17 3 0.13
18 11 0.48
19 4 0.17
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (17 bp):
ATATTTTTTATCTTTTT
Found at i:74190893 original size:31 final size:31
Alignment explanation
Indices: 74190855--74190917 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
74190845 AGGTTTAAAG
74190855 ATTGTATAAGAAGTGAGTCCAAAATTAGTGT
1 ATTGTATAAGAAGTGAGTCCAAAATTAGTGT
74190886 ATTGTATAAGAAGTGAGTCCAAAATTAGTGT
1 ATTGTATAAGAAGTGAGTCCAAAATTAGTGT
74190917 A
1 A
74190918 ATCTCAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.32
Consensus pattern (31 bp):
ATTGTATAAGAAGTGAGTCCAAAATTAGTGT
Found at i:74192818 original size:17 final size:17
Alignment explanation
Indices: 74192798--74192832 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
74192788 AATATTTGGT
74192798 AGTACAAAATTAGTCGA
1 AGTACAAAATTAGTCGA
74192815 AGTACAAAATTAGTCGA
1 AGTACAAAATTAGTCGA
74192832 A
1 A
74192833 AGCTCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (17 bp):
AGTACAAAATTAGTCGA
Found at i:74195990 original size:24 final size:22
Alignment explanation
Indices: 74195959--74196027 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
74195949 CATTGAGTTG
*
74195959 TGGTCTGAGTTCATGATGTATG
1 TGGTCTGAGTTCATGATGTATA
**
74195981 TGGCATCTGAACTCATTGA-GT-TA
1 TGG--TCTGAGTTCA-TGATGTATA
74196004 TGGTCTGAGTTCATGATGTATA
1 TGGTCTGAGTTCATGATGTATA
74196026 TG
1 TG
74196028 ACACATGTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
20 3 0.08
21 10 0.27
22 7 0.19
23 4 0.11
24 10 0.27
25 3 0.08
ACGTcount: A:0.22, C:0.12, G:0.28, T:0.39
Consensus pattern (22 bp):
TGGTCTGAGTTCATGATGTATA
Found at i:74196008 original size:45 final size:45
Alignment explanation
Indices: 74195939--74196024 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
74195929 GGAACTATGA
*
74195939 CATCAGAACTCATTGAGTTGTGGTCTGAGTTCATGATGTATGTGG
1 CATCAGAACTCATTGAGTTATGGTCTGAGTTCATGATGTATGTGG
*
74195984 CATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATGTAT
1 CATCAGAACTCATTGAGTTATGGTCTGAGTTCATGATGTAT
74196025 ATGACACATG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (45 bp):
CATCAGAACTCATTGAGTTATGGTCTGAGTTCATGATGTATGTGG
Found at i:74196017 original size:21 final size:21
Alignment explanation
Indices: 74195948--74196017 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
74195938 ACATCAGAAC
74195948 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
**
74195969 TCA-TGATGTATGTGGCATCTGAAC
1 TCATTGA-GT-TGTGG--TCTGAGT
*
74195993 TCATTGAGTTATGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
74196014 TCAT
1 TCAT
74196018 GATGTATATG
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
20 3 0.08
21 14 0.36
22 5 0.13
23 4 0.10
24 10 0.26
25 3 0.08
ACGTcount: A:0.20, C:0.13, G:0.27, T:0.40
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:74213284 original size:29 final size:29
Alignment explanation
Indices: 74213246--74213304 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
74213236 ATTTTTGATG
* * *
74213246 AATTTGATTATTATGGGA-TAAATTGTGAA
1 AATTAGATTA-TAAGGGACTAAAATGTGAA
74213275 AATTAGATTATAAGGGACTAAAATGTGAA
1 AATTAGATTATAAGGGACTAAAATGTGAA
74213304 A
1 A
74213305 TAAATGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.44, C:0.02, G:0.20, T:0.34
Consensus pattern (29 bp):
AATTAGATTATAAGGGACTAAAATGTGAA
Found at i:74213959 original size:43 final size:42
Alignment explanation
Indices: 74213809--74213960 Score: 123
Period size: 43 Copynumber: 3.5 Consensus size: 42
74213799 TTTTGTGTGA
*
74213809 GACCACGTCTGGGACGTTGGCATCA-ATTTGAGATTTACATGTAA
1 GACCACGTCTGGGACGTTGGCATCATA-TT-AGA-TTACATGTAG
* * * * * * *
74213853 GACCATGTCTGGGACATCGACATCATATTTGATTTCGTGTAAG
1 GACCACGTCTGGGACGTTGGCATCATATTAGATTACATGT-AG
*
74213896 G-CC-CTGTCTGGGGCAG-TGGCATCGATATTAGATTACATGTAG
1 GACCAC-GTCTGGGAC-GTTGGCATC-ATATTAGATTACATGTAG
*
74213938 GACCACGTCTGAGACGTTGGCAT
1 GACCACGTCTGGGACGTTGGCAT
74213961 TGTATGAGCT
Statistics
Matches: 82, Mismatches: 18, Indels: 17
0.70 0.15 0.15
Matches are distributed among these distances:
42 25 0.30
43 32 0.39
44 24 0.29
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (42 bp):
GACCACGTCTGGGACGTTGGCATCATATTAGATTACATGTAG
Found at i:74216888 original size:21 final size:22
Alignment explanation
Indices: 74216847--74216892 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
74216837 ATGAATTTTA
* *
74216847 ATGCTTTATTATTATTATGAGT
1 ATGCTTGATTATTACTATGAGT
74216869 ATGCTTGATTATT-CTATGAGT
1 ATGCTTGATTATTACTATGAGT
74216890 ATG
1 ATG
74216893 TGATTGGTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (22 bp):
ATGCTTGATTATTACTATGAGT
Found at i:74218773 original size:46 final size:46
Alignment explanation
Indices: 74218706--74218803 Score: 187
Period size: 46 Copynumber: 2.1 Consensus size: 46
74218696 AATTTGCATA
*
74218706 TGTATGAATGAAATTGATTTTGAATGAAATTTTTATGGCCCGGTTT
1 TGTATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGGTTT
74218752 TGTATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGGTTT
1 TGTATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGGTTT
74218798 TGTATG
1 TGTATG
74218804 TGTGCTTGTG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (46 bp):
TGTATGAATGAAATTGATTTTGAATGAAAATTTTATGGCCCGGTTT
Found at i:74222432 original size:19 final size:19
Alignment explanation
Indices: 74222410--74222452 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
74222400 GTGTACGAAG
*
74222410 ATGCACTTCGTGTGCCAGT
1 ATGCACTTCGTGTGCCAAT
* *
74222429 ATGCACTTTGTGTGTCAAT
1 ATGCACTTCGTGTGCCAAT
74222448 ATGCA
1 ATGCA
74222453 TTATATGTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (19 bp):
ATGCACTTCGTGTGCCAAT
Found at i:74225372 original size:42 final size:42
Alignment explanation
Indices: 74225313--74225394 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
74225303 AGTAAATGTG
74225313 AATGAGTCAATAGACTCCTAAAACGGGTTTGAATGGTAAGAT
1 AATGAGTCAATAGACTCCTAAAACGGGTTTGAATGGTAAGAT
74225355 AATGAGTCAATAGACTCCTAAAACGGGTTTGAATGGTAAG
1 AATGAGTCAATAGACTCCTAAAACGGGTTTGAATGGTAAG
74225395 CTAAAAGGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (42 bp):
AATGAGTCAATAGACTCCTAAAACGGGTTTGAATGGTAAGAT
Found at i:74227216 original size:19 final size:21
Alignment explanation
Indices: 74227192--74227232 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
74227182 AAGGGAGAAT
74227192 AAAG-AAATG-GAAAAAAAAA
1 AAAGAAAATGAGAAAAAAAAA
74227211 AAAGAAAATGATGAAAAAAAAA
1 AAAGAAAATGA-GAAAAAAAAA
74227233 TGGGTGTGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 5 0.26
22 10 0.53
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (21 bp):
AAAGAAAATGAGAAAAAAAAA
Found at i:74228628 original size:30 final size:29
Alignment explanation
Indices: 74228537--74228669 Score: 185
Period size: 29 Copynumber: 4.5 Consensus size: 29
74228527 GACAAGATTG
* * * *
74228537 GCACTAAGTGTGCGGGTTGAAAAATTGTACA
1 GCACTAAGTGTGCGAGCTG-AAAA-TATATA
* *
74228568 GCACTAAGTGTGCGAACTGAAAACATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
74228597 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
74228627 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
74228656 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
74228670 GATTCACTAT
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
29 45 0.48
30 32 0.34
31 16 0.17
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:74228639 original size:59 final size:60
Alignment explanation
Indices: 74228537--74228669 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
74228527 GACAAGATTG
* * *
74228537 GCACTAAGTGTGCGGGTTGAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAACATATA
1 GCACTAAGTGTGCGAGCTGAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
* * *
74228597 GCACTAAGTGTGCGAGCTG-AAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
74228656 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
74228670 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 50 0.75
60 17 0.25
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGCTGAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
Found at i:74235100 original size:18 final size:20
Alignment explanation
Indices: 74235077--74235115 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
74235067 AAGGGAGAAT
74235077 AAAG-AAATG-GAAAAAAAA
1 AAAGAAAATGAGAAAAAAAA
74235095 AAAGAAAATGATGAAAAAAAA
1 AAAGAAAATGA-GAAAAAAAA
74235116 TGGGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 5 0.28
21 9 0.50
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (20 bp):
AAAGAAAATGAGAAAAAAAA
Found at i:74236512 original size:30 final size:29
Alignment explanation
Indices: 74236451--74236553 Score: 179
Period size: 29 Copynumber: 3.5 Consensus size: 29
74236441 AAAATTGTAC
* *
74236451 AGCACTAAGTGTGCGAACTGAAAACATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
74236480 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
74236510 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
74236539 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74236554 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 43 0.61
30 28 0.39
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:74236517 original size:59 final size:60
Alignment explanation
Indices: 74236421--74236553 Score: 196
Period size: 59 Copynumber: 2.2 Consensus size: 60
74236411 GACAAGATTG
* * *
74236421 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAACATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
* * * *
74236481 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
74236540 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
74236554 GATTCACTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 51 0.77
60 15 0.23
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
Found at i:74242989 original size:18 final size:20
Alignment explanation
Indices: 74242966--74243004 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
74242956 AAGGGAGAAT
74242966 AAAG-AAATG-GAAAAAAAA
1 AAAGAAAATGAGAAAAAAAA
74242984 AAAGAAAATGATGAAAAAAAA
1 AAAGAAAATGA-GAAAAAAAA
74243005 TGGGTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 5 0.28
21 9 0.50
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (20 bp):
AAAGAAAATGAGAAAAAAAA
Found at i:74244401 original size:30 final size:29
Alignment explanation
Indices: 74244340--74244442 Score: 179
Period size: 29 Copynumber: 3.5 Consensus size: 29
74244330 AAAATTGTAC
* *
74244340 AGCACTAAGTGTGCGAACTGAAAACATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
74244369 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
74244399 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
74244428 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
74244443 GATTCACTAT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 43 0.61
30 28 0.39
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:74244406 original size:59 final size:60
Alignment explanation
Indices: 74244310--74244442 Score: 196
Period size: 59 Copynumber: 2.2 Consensus size: 60
74244300 GACAAGATTG
* * *
74244310 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAACATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
* * * *
74244370 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
74244429 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
74244443 GATTCACTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 51 0.77
60 15 0.23
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAACATATA
Found at i:74245878 original size:21 final size:21
Alignment explanation
Indices: 74245849--74245925 Score: 127
Period size: 21 Copynumber: 3.7 Consensus size: 21
74245839 GGTGTTACAG
*
74245849 AACACGCCCGTTTGGAAGGGC
1 AACACGCCCGTGTGGAAGGGC
*
74245870 AACATGCCCGTGTGGAAGGGC
1 AACACGCCCGTGTGGAAGGGC
74245891 AACACGCCCGTGTGGAAGGGC
1 AACACGCCCGTGTGGAAGGGC
*
74245912 AACACGTCCGTGTG
1 AACACGCCCGTGTG
74245926 ACCATCTAGA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.23, C:0.27, G:0.35, T:0.14
Consensus pattern (21 bp):
AACACGCCCGTGTGGAAGGGC
Found at i:74247209 original size:46 final size:46
Alignment explanation
Indices: 74247051--74247322 Score: 182
Period size: 46 Copynumber: 5.8 Consensus size: 46
74247041 GGGGCAAGTT
* * *
74247051 GCCGATGCCATGTCCC-GAACATGGTCTTACACTGGC-TATCATTATCGA
1 GCCGATG-CATGTCCCAG-ACATGGTCTTACACTGGCTTA-C-GTCTCAA
* * * *
74247099 GGCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTC-AA
74247145 GCCGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCAA
** * **
74247190 GACTAATGCATGTCCCAGACA-AGTCTTACACTACCATT-CGTCTCAA
1 G-CCGATGCATGTCCCAGACATGGTCTTACACTGGC-TTACGTCTCAA
* * ** * * ***
74247236 TTCCGATGCCATGTCCCAGACATGGTCTTACACAGGCTCCCATAATGTG
1 -GCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACGT-CTCAA
* *
74247285 GTCGATGCATGTCCCAGACAT-GTCTTACACTAGCTTAC
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTAC
74247323 AGCAGTGACC
Statistics
Matches: 180, Mismatches: 32, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
44 12 0.07
45 19 0.11
46 67 0.37
47 31 0.17
48 49 0.27
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCAA
Found at i:74257765 original size:49 final size:49
Alignment explanation
Indices: 74257689--74258003 Score: 207
Period size: 49 Copynumber: 6.7 Consensus size: 49
74257679 GGGGCAAGTT
* *
74257689 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTATCAT-TATCGAG
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCTAT-GAG
* * * * *
74257738 GCCGATGCCATGTCCCAGACATTGTCTTACACTAGCTCTC-TATATTCAT
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCTA-TGAG
* * *
74257787 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-A-CATCT-TGTA-
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCTATG-AG
* * * * *
74257833 GTCGATG-CGTGTCCCAAACA-TGTCTTACACTGGCT-TACGTCT-TGAA
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTAT-CATCTATGAG
* * * *
74257879 ACTGATG-CATGTCCCAGACA-TGTCTTACACTAGC-ATTCATCTCA--AT
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTA-TCATCT-ATGAG
* * * * * *
74257925 GCCAATGCCATGTCCCAGAAATGGTCTTACACTGGCTCTCAT-AATGTG
1 GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCTATGAG
* *
74257973 GCTGATG-CATGTCCCAGACA-TGTCCTACACT
1 GCCGATGCCATGTCCCAGACATTGTCTTACACT
74258004 AGCTCACATC
Statistics
Matches: 208, Mismatches: 41, Indels: 37
0.73 0.14 0.13
Matches are distributed among these distances:
44 12 0.06
45 12 0.06
46 61 0.29
47 27 0.13
48 24 0.12
49 71 0.34
50 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATTGTCTTACACTGGCTATCATCTATGAG
Found at i:74257994 original size:140 final size:141
Alignment explanation
Indices: 74257741--74258003 Score: 333
Period size: 140 Copynumber: 1.9 Consensus size: 141
74257731 TATCGAGGCC
* * *
74257741 GATGCCATGTCCCAGACATTGTCTTACACTAGCTCTCTATATTCATGTCGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATTGTCTTACACTAGCTCTCTATACTCATGCCAATGCCATGTCCCAGA
* * *
74257806 CATGGTCTTACACTGACACATCTTGTAGTCGATGCGTGTCCCAAACATGTCTTACACTGGCTTAC
66 AATGGTCTTACACTGACACATCTTGTAGTCGATGCATGTCCCAAACATGTCCTACACTGGCTTAC
74257871 GTCTTGAAACT
131 GTCTTGAAACT
74257882 GATG-CATGTCCCAGACA-TGTCTTACACTAGCAT-TC-AT-CTCAATGCCAATGCCATGTCCCA
1 GATGCCATGTCCCAGACATTGTCTTACACTAGC-TCTCTATACTC-ATGCCAATGCCATGTCCCA
* * * *
74257942 GAAATGGTCTTACACTGGCTC-TCATAATGT-GGCTGATGCATGTCCCAGACATGTCCTACACT
64 GAAATGGTCTTACACTGACACATC-T--TGTAGTC-GATGCATGTCCCAAACATGTCCTACACT
74258004 AGCTCACATC
Statistics
Matches: 106, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
137 4 0.04
138 38 0.36
139 18 0.17
140 42 0.40
141 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (141 bp):
GATGCCATGTCCCAGACATTGTCTTACACTAGCTCTCTATACTCATGCCAATGCCATGTCCCAGA
AATGGTCTTACACTGACACATCTTGTAGTCGATGCATGTCCCAAACATGTCCTACACTGGCTTAC
GTCTTGAAACT
Found at i:74265747 original size:24 final size:24
Alignment explanation
Indices: 74265715--74265777 Score: 117
Period size: 24 Copynumber: 2.6 Consensus size: 24
74265705 AATCTCAAAT
74265715 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
74265739 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
74265763 ACACTATGTGTGCGA
1 GCACTATGTGTGCGA
74265778 ACATAATAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:74271310 original size:2 final size:2
Alignment explanation
Indices: 74271303--74271336 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
74271293 TAGCTTCAGC
74271303 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
74271337 AATGACACTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:74276178 original size:46 final size:45
Alignment explanation
Indices: 74275980--74276249 Score: 183
Period size: 46 Copynumber: 5.7 Consensus size: 45
74275970 GCAAGTTGCC
* * * *
74275980 GATGCCATGTCCCGGACATGTTCTTACGCTGGC-TATCATTATCGAGGCT
1 GATG-CATGTCCCAGACATG-TCTTACACTGGCTTA-C-GTCTCGA-GCT
* * * *
74276029 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CGCATATTCGTGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACG--T-CTCGAGCT
* * *
74276079 GATGCAATGTTCCAGACATGGTC-TACACTGAC--ACATCTCGTAGCT
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCG-AGCT
*
74276124 GATGCATGTCCCAGACATGTGTTACACTGGCTTACGTCTCGAGACT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG-CT
* * *
74276170 GATGCATGTCCCAGACATGTCTTACACTAGCATT-CGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGA-GCT
*
74276216 GATGCCATGTCCTAGACATGGTCTTACACTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT
74276250 CTCATAATAT
Statistics
Matches: 180, Mismatches: 24, Indels: 36
0.75 0.10 0.15
Matches are distributed among these distances:
43 2 0.01
44 23 0.13
45 10 0.06
46 50 0.28
47 18 0.10
48 12 0.07
49 37 0.21
50 24 0.13
51 4 0.02
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGCT
Found at i:74276272 original size:47 final size:45
Alignment explanation
Indices: 74276124--74276294 Score: 141
Period size: 46 Copynumber: 3.7 Consensus size: 45
74276114 TCTCGTAGCT
* * * ** *
74276124 GATGCATGTCCCAGACATGTGTTACACTGGCTTACGTCTCGA-GACT
1 GATGCATGTCCCAGACATGTCTTACACTAGCAT-CGTCTAAATG-CC
*
74276170 GATGCATGTCCCAGACATGTCTTACACTAGCATTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCA-TCGTCTAAATGCC
* *
74276216 GATGCCATGTCCTAGACATGGTCTTACACTGGC-TC-TCATAATATGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCATCGTC-TAA-AT-GCC
* * *
74276264 GATGCATGTCGCAGTCATATCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
74276295 TCACACCAGT
Statistics
Matches: 105, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
45 2 0.02
46 56 0.53
47 28 0.27
48 19 0.18
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCATCGTCTAAATGCC
Found at i:74278047 original size:14 final size:14
Alignment explanation
Indices: 74278028--74278065 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
74278018 GTTTGCCAGT
*
74278028 AAAATGTTTTCTAA
1 AAAATGATTTCTAA
*
74278042 AAAATGATTTCTAG
1 AAAATGATTTCTAA
74278056 AAAATGATTT
1 AAAATGATTT
74278066 ACTTTTCTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (14 bp):
AAAATGATTTCTAA
Found at i:74278081 original size:19 final size:19
Alignment explanation
Indices: 74278057--74278094 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
74278047 GATTTCTAGA
74278057 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
74278076 AAATGATTTACTTTTCTGG
1 AAATGATTTACTTTTCTGG
74278095 TGTTTGGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
AAATGATTTACTTTTCTGG
Found at i:74278212 original size:28 final size:28
Alignment explanation
Indices: 74278180--74278236 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
74278170 TTTACATATA
74278180 TTAATAAATTTATAT-TTTAAATTATTTT
1 TTAATAAATTTAT-TCTTTAAATTATTTT
*
74278208 TTAATAAATTTATTCTTTAAATTGTTTT
1 TTAATAAATTTATTCTTTAAATTATTTT
74278236 T
1 T
74278237 ACATATATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 1 0.04
28 26 0.96
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (28 bp):
TTAATAAATTTATTCTTTAAATTATTTT
Found at i:74278221 original size:16 final size:16
Alignment explanation
Indices: 74278180--74278227 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
74278170 TTTACATATA
74278180 TTAATAAATTTA-TAT
1 TTAATAAATTTATTAT
*
74278195 TT--TAAA-TTATTTT
1 TTAATAAATTTATTAT
*
74278208 TTAATAAATTTATTCT
1 TTAATAAATTTATTAT
74278224 TTAA
1 TTAA
74278228 ATTGTTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
12 3 0.11
13 8 0.30
15 6 0.22
16 10 0.37
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (16 bp):
TTAATAAATTTATTAT
Found at i:74279825 original size:51 final size:51
Alignment explanation
Indices: 74279726--74279858 Score: 149
Period size: 51 Copynumber: 2.6 Consensus size: 51
74279716 CCATCAAATC
* * *
74279726 TCTAAGAATATAATATCATATCTTCTAAGATTACATATCTTAGATAAGATA
1 TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
* ** * * * ** *
74279777 TGTAATCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAGATC
1 TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
*
74279828 TCTAAGATTATAATATCATATCTTTTAAGAT
1 TCTAAGATTATAATATCATATCTTATAAGAT
74279859 CATGTTTCCA
Statistics
Matches: 64, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.40
Consensus pattern (51 bp):
TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
Found at i:74280931 original size:96 final size:96
Alignment explanation
Indices: 74280765--74280958 Score: 298
Period size: 96 Copynumber: 2.0 Consensus size: 96
74280755 TCGCTTCTTT
* * *
74280765 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGTTTCTTGGGCTCCTT
1 TTGCTCCTCTTAGCCCTCATGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
* * * *
74280830 GTCTGCTCCATCGTTCCCTTCGATGACAGAC
66 ATCTGCTCCATCATTCCCATCGATAACAGAC
* *
74280861 TTGCTCCTCTTTGCCCTCATGGCTTCGGTTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
1 TTGCTCCTCTTAGCCCTCATGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
*
74280926 ATCTGCTCGATCATTCCCATCGATAACAGAC
66 ATCTGCTCCATCATTCCCATCGATAACAGAC
74280957 TT
1 TT
74280959 CCTCGGACAC
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 88 1.00
ACGTcount: A:0.13, C:0.34, G:0.18, T:0.35
Consensus pattern (96 bp):
TTGCTCCTCTTAGCCCTCATGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
ATCTGCTCCATCATTCCCATCGATAACAGAC
Found at i:74284029 original size:40 final size:40
Alignment explanation
Indices: 74283984--74284150 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74283974 CGGAATATAA
74283984 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74284024 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74284064 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74284104 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74284143 CCGGATAT
1 CCGGATAT
74284151 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74292019 original size:40 final size:40
Alignment explanation
Indices: 74291974--74292062 Score: 135
Period size: 40 Copynumber: 2.2 Consensus size: 40
74291964 CGGAATATAA
*
74291974 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAAC-TCGCACAAATGCCTTCGGGTCTTAGC
* *
74292014 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
74292054 CCGGATATA
1 CCGGATATA
74292063 GCCACCTAGC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.02
40 43 0.98
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAATAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:74292074 original size:19 final size:18
Alignment explanation
Indices: 74292050--74292090 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 18
74292040 CTTCGGGTCT
74292050 TAGCCCGGATATAGCCACC
1 TAGCCCGGATATAGCCA-C
74292069 TAGCCCGGATATAGCCAC
1 TAGCCCGGATATAGCCAC
74292087 TAGC
1 TAGC
74292091 ACAATTGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.27, C:0.34, G:0.22, T:0.17
Consensus pattern (18 bp):
TAGCCCGGATATAGCCAC
Found at i:74293958 original size:51 final size:51
Alignment explanation
Indices: 74293859--74293991 Score: 149
Period size: 51 Copynumber: 2.6 Consensus size: 51
74293849 CCATCAAATC
* * *
74293859 TCTAAGAATATAATATCATATCTTCTAAGATTACATATCTTAGATAAGATA
1 TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
* ** * * * ** *
74293910 TGTAATCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAGATC
1 TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
*
74293961 TCTAAGATTATAATATCATATCTTTTAAGAT
1 TCTAAGATTATAATATCATATCTTATAAGAT
74293992 CATGTTTCCA
Statistics
Matches: 64, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.40
Consensus pattern (51 bp):
TCTAAGATTATAATATCATATCTTATAAGATTACATATCATAGATAAGATA
Found at i:74302777 original size:40 final size:41
Alignment explanation
Indices: 74302679--74302784 Score: 119
Period size: 41 Copynumber: 2.6 Consensus size: 41
74302669 TTCGAATGGT
* ** *
74302679 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTGACTAA
*
74302720 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TTACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTGACTA-A
*
74302761 A-CCGGGCTATGTCCCGAAGACAAT
1 ATCCGGGCTATGTCCCGAAGGCAAT
74302785 CGAGCGAGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
39 2 0.04
40 24 0.43
41 29 0.52
42 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTGACTAA
Found at i:74309659 original size:44 final size:44
Alignment explanation
Indices: 74309557--74309717 Score: 184
Period size: 46 Copynumber: 3.6 Consensus size: 44
74309547 GTCGATGCCG
* * *
74309557 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGACGCA
74309603 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
* * *
74309647 TGTCCCAGACATGTCTGACACTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC-A-CATCTCGTA-GCCGACGCA
74309693 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
74309718 CCTCGTCTCA
Statistics
Matches: 102, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
43 3 0.03
44 31 0.30
45 2 0.02
46 65 0.64
47 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
Found at i:74309734 original size:46 final size:43
Alignment explanation
Indices: 74309600--74309762 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 43
74309590 CCGTGCTGAC
*
74309600 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGT-AGCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCTC-TCAGCCGAT
* * *
74309644 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
*
74309690 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
* *
74309736 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
74309763 GGCACACAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
43 4 0.04
44 28 0.28
45 1 0.01
46 45 0.45
47 12 0.12
48 10 0.10
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.26
Consensus pattern (43 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCTCTCAGCCGAT
Found at i:74316568 original size:46 final size:46
Alignment explanation
Indices: 74316518--74316693 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
74316508 TGTTTGGGCA
* *
74316518 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
74316564 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
74316611 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
74316657 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74316694 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:74316673 original size:93 final size:93
Alignment explanation
Indices: 74316514--74316685 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
74316504 AGGATGTTTG
* ***
74316514 GGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAG
74316579 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
74316607 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAG
74316672 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
74316686 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:74321867 original size:49 final size:49
Alignment explanation
Indices: 74321516--74321862 Score: 550
Period size: 49 Copynumber: 7.1 Consensus size: 49
74321506 CAAGATTCGT
* * * *
74321516 GAAAATGTATATATATGTGATGAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
*
74321565 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * * *
74321614 GAAAATGTATATATATGTGATGAGGCCTAATGGTCGATGCGATGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
74321663 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * *
74321712 GAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
*
74321761 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * *
74321810 GAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
74321859 GAAA
1 GAAA
74321863 GTATAATTAG
Statistics
Matches: 277, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 277 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (49 bp):
GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
Found at i:74321907 original size:178 final size:178
Alignment explanation
Indices: 74321694--74322042 Score: 590
Period size: 178 Copynumber: 2.0 Consensus size: 178
74321684 AAGGCCTAAT
* *
74321694 GGCCGATGTGATGAATGCGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GGCCGATGTGATGAATGCGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGCGATGAAT
*
74321759 GCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTAT
66 GCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTAT
74321824 ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
131 ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
* * * * *
74321872 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GGCCGATGTGATGAATGCGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGCGATGAAT
* *
74321937 GCGAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTAT
66 GCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTAT
* *
74322002 ATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGT
131 ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGT
74322043 GTATGTATAT
Statistics
Matches: 159, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
178 159 1.00
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.28
Consensus pattern (178 bp):
GGCCGATGTGATGAATGCGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGCGATGAAT
GCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTAT
ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
Found at i:74321925 original size:80 final size:80
Alignment explanation
Indices: 74321792--74321947 Score: 312
Period size: 80 Copynumber: 1.9 Consensus size: 80
74321782 AAGGCCTAAT
74321792 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
74321857 GCGAAAGTATAATTA
66 GCGAAAGTATAATTA
74321872 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
74321937 GCGAAAGTATA
66 GCGAAAGTATA
74321948 TGTATATGTG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 76 1.00
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.27
Consensus pattern (80 bp):
GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
GCGAAAGTATAATTA
Found at i:74321929 original size:49 final size:49
Alignment explanation
Indices: 74321872--74322121 Score: 392
Period size: 49 Copynumber: 5.1 Consensus size: 49
74321862 AGTATAATTA
74321872 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
*
74321921 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATGAGGCCTAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
*
74321970 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATGAGGCCTAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
* *
74322019 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
* * * * * *
74322068 GGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGGTAAAGCCGAAT
1 GGCCGATGTGGTGAATGCGAAA--GTATATGTATATGTGATAAGGCCTAAT
74322119 GGC
1 GGC
74322122 TAATGTGAAT
Statistics
Matches: 189, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
49 164 0.87
51 25 0.13
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.29
Consensus pattern (49 bp):
GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
Found at i:74321973 original size:129 final size:129
Alignment explanation
Indices: 74321743--74321996 Score: 463
Period size: 129 Copynumber: 2.0 Consensus size: 129
74321733 GAGGCCTAAT
*
74321743 GGCCGATGCGATGAATGCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
74321808 GCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
66 GCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
* * *
74321872 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
*
74321937 GCGAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATA
66 GCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATA
74321997 TGTATATGTG
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
129 120 1.00
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (129 bp):
GGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
GCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
Found at i:74322051 original size:227 final size:227
Alignment explanation
Indices: 74321656--74322091 Score: 737
Period size: 227 Copynumber: 1.9 Consensus size: 227
74321646 GTCGATGCGA
* *
74321656 TGAATGCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTA
1 TGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATATA
*
74321721 TATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATGTATATGTGATAAGG
66 TATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGG
74321786 CCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTG
131 CCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTG
*
74321851 GTGAATGCGAAAGTATAATTAGGCCGATGTGG
196 ATGAATGCGAAAGTATAATTAGGCCGATGTGG
* * *
74321883 TGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATA
1 TGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATATA
* * * * *
74321948 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATGAGG
66 TATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGG
* *
74322013 CCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
131 CCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTG
*
74322078 ATGAATGTGAAAGT
196 ATGAATGCGAAAGT
74322092 GTATATATAT
Statistics
Matches: 194, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
227 194 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (227 bp):
TGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATATA
TATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGG
CCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGCGAAAGTATAATTAGGCCGATGTGG
Found at i:74322225 original size:37 final size:36
Alignment explanation
Indices: 74322170--74322256 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
74322160 AACTTGGAAA
74322170 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
74322208 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
74322245 TATGTCCGGGTA
1 TATGTCCGGGTA
74322257 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:74324165 original size:40 final size:40
Alignment explanation
Indices: 74324119--74324418 Score: 270
Period size: 40 Copynumber: 7.5 Consensus size: 40
74324109 TGAATGATAC
* *
74324119 CCGGGCTAAGTCCCGAAG-GCATTTATGCTAGTGAATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTG-ATGTAT
* * * * *
74324159 CCGGGCTAAGACCCGAAG-GTATTTGTG-TGAGTTGTTATAC
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCT-AG-TGATGTAT
* * * * * *
74324199 CCGGGTTAAGACCCGAAG-GCAATTGTGCTTGTGGTTTTAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGT-GATGTAT
* **
74324239 CC-GGCTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTAT
* * *
74324278 CCGGACTAAGTTCCGAAGAGCA-TTCTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTAT
* * * *
74324317 CCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTAT
* * * *
74324357 CCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGCAT
1 CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTAT
*
74324397 CCGGGCTAGGTCCCGAAGAGCA
1 CCGGGCTAAGTCCCGAAGAGCA
74324419 ATCATGCTGG
Statistics
Matches: 221, Mismatches: 32, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
39 56 0.25
40 162 0.73
41 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTTGTGCTAGTGATGTAT
Found at i:74324294 original size:79 final size:79
Alignment explanation
Indices: 74324236--74324418 Score: 296
Period size: 79 Copynumber: 2.3 Consensus size: 79
74324226 CTTGTGGTTT
74324236 TATCCGG-CTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
74324300 TTCTGCTAGTGATG
66 TTCTGCTAGTGATG
* *
74324314 TATCCGGACTAAGTTCCGAGGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
74324379 TTCGTGCTAGTGATG
66 TTC-TGCTAGTGATG
* * * *
74324394 CATCCGGGCTAGGTCCCGAAGAGCA
1 TATCCGGACTAAGTTCCGAAGAGCA
74324419 ATCATGCTGG
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
78 7 0.07
79 58 0.60
80 31 0.32
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TATCCGGACTAAGTTCCGAAGAGCATCCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCA
TTCTGCTAGTGATG
Found at i:74328613 original size:49 final size:49
Alignment explanation
Indices: 74328262--74328608 Score: 550
Period size: 49 Copynumber: 7.1 Consensus size: 49
74328252 CAAGATTCGT
* * * *
74328262 GAAAATGTATATATATGTGATGAGGCCTAATGGTCGATGTGATGAATGT
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
*
74328311 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * * *
74328360 GAAAATGTATATATATGTGATGAGGCCTAATGGTCGATGCGATGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
74328409 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * *
74328458 GAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
*
74328507 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
* * *
74328556 GAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGC
1 GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
74328605 GAAA
1 GAAA
74328609 GTATAATTAG
Statistics
Matches: 277, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 277 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (49 bp):
GAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGC
Found at i:74328653 original size:178 final size:178
Alignment explanation
Indices: 74328440--74328788 Score: 590
Period size: 178 Copynumber: 2.0 Consensus size: 178
74328430 AAGGCCTAAT
* *
74328440 GGCCGATGTGATGAATGCGAAAATGTATATATATGTGATGAGGCCTAATGGCCGATGCGATGAAT
1 GGCCGATGTGATGAATGCGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGCGATGAAT
*
74328505 GCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTAT
66 GCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTAT
74328570 ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
131 ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
* * * * *
74328618 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GGCCGATGTGATGAATGCGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGCGATGAAT
* *
74328683 GCGAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTAT
66 GCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTAT
* *
74328748 ATGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGT
131 ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGT
74328789 GTATGTATAT
Statistics
Matches: 159, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
178 159 1.00
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.28
Consensus pattern (178 bp):
GGCCGATGTGATGAATGCGAAAATATATATATATGTGATAAGGCCTAATGGCCGATGCGATGAAT
GCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTAT
ATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
Found at i:74328671 original size:80 final size:80
Alignment explanation
Indices: 74328538--74328693 Score: 312
Period size: 80 Copynumber: 1.9 Consensus size: 80
74328528 AAGGCCTAAT
74328538 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
74328603 GCGAAAGTATAATTA
66 GCGAAAGTATAATTA
74328618 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
74328683 GCGAAAGTATA
66 GCGAAAGTATA
74328694 TGTATATGTG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 76 1.00
ACGTcount: A:0.31, C:0.10, G:0.32, T:0.27
Consensus pattern (80 bp):
GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
GCGAAAGTATAATTA
Found at i:74328675 original size:49 final size:49
Alignment explanation
Indices: 74328618--74328867 Score: 392
Period size: 49 Copynumber: 5.1 Consensus size: 49
74328608 AGTATAATTA
74328618 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
*
74328667 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATGAGGCCTAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
*
74328716 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATGAGGCCTAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
* *
74328765 GGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
* * * * * *
74328814 GGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGGTAAAGCCGAAT
1 GGCCGATGTGGTGAATGCGAAA--GTATATGTATATGTGATAAGGCCTAAT
74328865 GGC
1 GGC
74328868 TAATGTGAAT
Statistics
Matches: 189, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
49 164 0.87
51 25 0.13
ACGTcount: A:0.30, C:0.10, G:0.32, T:0.29
Consensus pattern (49 bp):
GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAAT
Found at i:74328719 original size:129 final size:129
Alignment explanation
Indices: 74328489--74328742 Score: 463
Period size: 129 Copynumber: 2.0 Consensus size: 129
74328479 GAGGCCTAAT
*
74328489 GGCCGATGCGATGAATGCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
74328554 GCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
66 GCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
* * *
74328618 GGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
1 GGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
*
74328683 GCGAAAGTATATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATA
66 GCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATA
74328743 TGTATATGTG
Statistics
Matches: 120, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
129 120 1.00
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (129 bp):
GGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
GCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATAATTA
Found at i:74328797 original size:227 final size:227
Alignment explanation
Indices: 74328402--74328837 Score: 737
Period size: 227 Copynumber: 1.9 Consensus size: 227
74328392 GTCGATGCGA
* *
74328402 TGAATGCGAAAATGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATGTA
1 TGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATATA
*
74328467 TATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATGTATGTATATGTGATAAGG
66 TATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGG
74328532 CCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTG
131 CCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTG
*
74328597 GTGAATGCGAAAGTATAATTAGGCCGATGTGG
196 ATGAATGCGAAAGTATAATTAGGCCGATGTGG
* * *
74328629 TGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATA
1 TGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATATA
* * * * *
74328694 TGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATGAGG
66 TATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGG
* *
74328759 CCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTG
131 CCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTG
*
74328824 ATGAATGTGAAAGT
196 ATGAATGCGAAAGT
74328838 GTATATATAT
Statistics
Matches: 194, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
227 194 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (227 bp):
TGAATGCGAAAATATATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAATATA
TATATATGTGATGAGGCCTAATGGCCGATGCGATGAATGCGAAAATATATGTATATGTGATAAGG
CCTAATGGCCGATGTGGTGAATGCGAAAGTATATGTATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGCGAAAGTATAATTAGGCCGATGTGG
Found at i:74328971 original size:37 final size:36
Alignment explanation
Indices: 74328916--74329002 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
74328906 AACTTGGAAA
74328916 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
74328954 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
74328991 TATGTCCGGGTA
1 TATGTCCGGGTA
74329003 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:74333616 original size:39 final size:39
Alignment explanation
Indices: 74333572--74333692 Score: 224
Period size: 39 Copynumber: 3.1 Consensus size: 39
74333562 AATTATATTA
*
74333572 CCAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
74333611 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
74333650 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
74333689 CCAG
1 CCAG
74333693 TGTCTTGCAT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 79 1.00
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:74339466 original size:39 final size:39
Alignment explanation
Indices: 74339422--74339581 Score: 293
Period size: 39 Copynumber: 4.1 Consensus size: 39
74339412 AATTATATTA
* *
74339422 CCAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
74339461 CCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74339500 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74339539 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
74339578 CCAG
1 CCAG
74339582 TGTCTTGCAT
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 117 1.00
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:74345219 original size:39 final size:39
Alignment explanation
Indices: 74345175--74345334 Score: 284
Period size: 39 Copynumber: 4.1 Consensus size: 39
74345165 AATTATATTA
*
74345175 CCAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
74345214 CCAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
74345253 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
74345292 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
74345331 CCAG
1 CCAG
74345335 TGTCTTGCAT
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 116 1.00
ACGTcount: A:0.24, C:0.31, G:0.24, T:0.20
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:74348713 original size:48 final size:48
Alignment explanation
Indices: 74348634--74348861 Score: 200
Period size: 48 Copynumber: 4.9 Consensus size: 48
74348624 CATATGGTAG
* * * *
74348634 GATGCCAATGCCATATCTC-GTATATGATCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAG-ACATGGTCTTACATGGGATCACATATC
* * * ** *
74348682 GGTGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTTAGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* *
74348730 GATGCCAATGCCATGTCCCAAACATGGTCTTATATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * **** * *
74348778 GATGCCGAT---A-G-CCCAG-CTATGATCTTACACAAAATTAAATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
*
74348821 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
74348862 GTACATAACC
Statistics
Matches: 136, Mismatches: 36, Indels: 16
0.72 0.19 0.09
Matches are distributed among these distances:
42 1 0.01
43 28 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 101 0.74
49 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:74352764 original size:40 final size:40
Alignment explanation
Indices: 74352656--74352825 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
74352646 CGGGATTTAA
* * * * *
74352656 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
74352696 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74352736 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74352776 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74352816 CCGGATATAT
1 CCGGATATAT
74352826 TTCCAATGTT
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 112 0.99
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74360860 original size:40 final size:40
Alignment explanation
Indices: 74360752--74360961 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
74360742 CGGGATTTAA
* * * * *
74360752 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
74360792 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74360832 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74360872 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74360912 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
74360952 CCGGATATAT
1 CCGGATATAT
74360962 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:74368774 original size:40 final size:39
Alignment explanation
Indices: 74368609--74368792 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
74368599 AAATTGAATG
* * *
74368609 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
74368649 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
74368689 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
74368729 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
74368768 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
74368793 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:74368817 original size:80 final size:81
Alignment explanation
Indices: 74368649--74368837 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
74368639 GCTGGAAATT
* * * *
74368649 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
74368714 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
74368730 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
74368793 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
74368809 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
74368838 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:74372115 original size:40 final size:39
Alignment explanation
Indices: 74372070--74372276 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
74372060 CGGAATACAA
*
74372070 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74372110 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74372150 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
74372190 CCGGATGTAGTCACTAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
74372229 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
74372269 CCGGATAT
1 CCGGATAT
74372277 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 35 0.24
40 108 0.76
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74372210 original size:80 final size:80
Alignment explanation
Indices: 74372070--74372274 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 80
74372060 CGGAATACAA
* * *
74372070 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
74372134 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* *
74372150 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
74372213 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
74372229 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
74372275 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 55 0.51
80 49 0.45
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
CCTTCGGGTATTAAC
Found at i:74380127 original size:40 final size:39
Alignment explanation
Indices: 74380082--74380288 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
74380072 CGGAATACAA
*
74380082 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74380122 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
74380162 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
74380202 CCGGATGTAGTCACTAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
74380241 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
74380281 CCGGATAT
1 CCGGATAT
74380289 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 35 0.24
40 108 0.76
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:74380222 original size:80 final size:80
Alignment explanation
Indices: 74380082--74380286 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 80
74380072 CGGAATACAA
* * *
74380082 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCAC-AAT
*
74380146 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* *
74380162 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAT
*
74380225 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
74380241 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
74380287 ATCATTCAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 55 0.51
80 49 0.45
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAATG
CCTTCGGGTATTAAC
Found at i:74385467 original size:21 final size:21
Alignment explanation
Indices: 74385443--74385490 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
74385433 CAGCGAGGCT
74385443 ACCAGATATTGTGACGAAGTC
1 ACCAGATATTGTGACGAAGTC
74385464 ACCAGATATTGTGACGAAGTC
1 ACCAGATATTGTGACGAAGTC
74385485 ACCAGA
1 ACCAGA
74385491 ACAGATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (21 bp):
ACCAGATATTGTGACGAAGTC
Found at i:74385536 original size:88 final size:91
Alignment explanation
Indices: 74385333--74385536 Score: 245
Period size: 88 Copynumber: 2.2 Consensus size: 91
74385323 CACCACAGAA
* * * *
74385333 ATTGCAGCGAGGCTGCAAGATATTGTGACGAAGTCACCAGGTACAGAAATTGTGGCTAGGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACC----ACAGAAATTGTGACGAAGCCACC
* *
74385398 ATAATAGATATATATGTGGCGAAGCCACCAG
62 AGAACAGA-ATATATGTGGCGAAGCCACCAG
* * *
74385429 ATTGCAGCGAGGCTACCAGATATTGTGACGAAGTCA-C-CAGATATTGTGACGAAGTCACCAGAA
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCACAGAAATTGTGACGAAGCCACCAGAA
74385492 CAG-ATATATGTGGCG-AGACCACCAG
66 CAGAATATATGTGGCGAAG-CCACCAG
74385517 ATTGCAGCGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
74385537 ACGCTTCTTC
Statistics
Matches: 97, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
87 2 0.02
88 38 0.39
90 22 0.23
95 1 0.01
96 34 0.35
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20
Consensus pattern (91 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCACAGAAATTGTGACGAAGCCACCAGAA
CAGAATATATGTGGCGAAGCCACCAG
Found at i:74387604 original size:27 final size:27
Alignment explanation
Indices: 74387550--74387660 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
74387540 AGCATGGCTG
* *
74387550 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
74387576 CCAGAACAGATAATTGTGGCAGAACCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
74387603 CCAGAATAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
74387630 CCGGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
74387657 CCAG
1 CCAG
74387661 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 15 0.21
27 55 0.76
28 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:74387640 original size:54 final size:53
Alignment explanation
Indices: 74387550--74387660 Score: 150
Period size: 54 Copynumber: 2.1 Consensus size: 53
74387540 AGCATGGCTG
*
74387550 CCAGAACAGATAATGTGACAGAGTCACCAGAACAGATAATTGTGGCAGAACCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTGTGGCAGAACCA
* * * * * *
74387603 CCAGAATAGATATATGTGGCAGAGCCACCGGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGAACAGATAATTGTGGCAGAACCA
74387657 CCAG
1 CCAG
74387661 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 11 0.22
54 39 0.78
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTGTGGCAGAACCA
Found at i:74387899 original size:23 final size:23
Alignment explanation
Indices: 74387869--74387914 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
74387859 TACATAACAT
74387869 AGCCATTTACGTACGACCAGAAA
1 AGCCATTTACGTACGACCAGAAA
74387892 AGCCATTTACGTACGACCAGAAA
1 AGCCATTTACGTACGACCAGAAA
74387915 CACTTACTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.26, G:0.17, T:0.17
Consensus pattern (23 bp):
AGCCATTTACGTACGACCAGAAA
Found at i:74388125 original size:8 final size:8
Alignment explanation
Indices: 74388099--74388128 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
74388089 TCAAAATACC
74388099 GCTTTTCG
1 GCTTTTCG
*
74388107 GCATTTCG
1 GCTTTTCG
74388115 GCTTTTCG
1 GCTTTTCG
74388123 GCTTTT
1 GCTTTT
74388129 GCCGATCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.50
Consensus pattern (8 bp):
GCTTTTCG
Found at i:74402100 original size:11 final size:11
Alignment explanation
Indices: 74402084--74402121 Score: 67
Period size: 11 Copynumber: 3.5 Consensus size: 11
74402074 TTTTGGATAT
*
74402084 ATTCGACAAAG
1 ATTCGACGAAG
74402095 ATTCGACGAAG
1 ATTCGACGAAG
74402106 ATTCGACGAAG
1 ATTCGACGAAG
74402117 ATTCG
1 ATTCG
74402122 GCGTTGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (11 bp):
ATTCGACGAAG
Found at i:74409585 original size:28 final size:28
Alignment explanation
Indices: 74409520--74409620 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
74409510 ATAGTGAATC
*
74409520 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
74409549 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
74409577 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
74409607 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74409621 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:74413138 original size:40 final size:40
Alignment explanation
Indices: 74413083--74413290 Score: 215
Period size: 40 Copynumber: 5.2 Consensus size: 40
74413073 TGAATGATAC
* * ** * *
74413083 CCGGGCTAAGTCCCGAGGGCATTTATGCTAG-TGATTCTAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
*
74413123 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
*
74413163 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* * *** *
74413203 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
* ** *
74413243 CCGGGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATAT
74413283 CC-GGCTAA
1 CCGGGCTAA
74413291 ATTCCGAAGA
Statistics
Matches: 141, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 5 0.04
40 131 0.93
41 5 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
Found at i:74413218 original size:80 final size:79
Alignment explanation
Indices: 74413083--74413290 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 79
74413073 TGAATGATAC
* * * *
74413083 CCGGGCTAAGTCCCGAGGGCATTTATGCTAG-TGATTCTATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGCATTC
* ***
74413147 GTGCGAGTTGTTAAAT
64 GTGCAAGTTACCAAAT
* * *
74413163 CTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCG
74413228 TGCAAGTTACCAAAT
65 TGCAAGTTACCAAAT
* * *
74413243 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGGGCTAA
74413291 ATTCCGAAGA
Statistics
Matches: 109, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
79 8 0.07
80 96 0.88
81 5 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTCGT
GCAAGTTACCAAAT
Found at i:74415162 original size:40 final size:40
Alignment explanation
Indices: 74415117--74415284 Score: 198
Period size: 40 Copynumber: 4.2 Consensus size: 40
74415107 CGGAATACAA
*
74415117 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
74415157 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* **
74415197 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
* * *
74415237 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTATTAGC
74415277 CCGGATAT
1 CCGGATAT
74415285 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTATTAGC
Found at i:74415257 original size:80 final size:80
Alignment explanation
Indices: 74415117--74415284 Score: 232
Period size: 80 Copynumber: 2.1 Consensus size: 80
74415107 CGGAATACAA
* * *
74415117 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
*
74415182 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
74415197 CCGGATATAACAACTTGCACGAATGCCTTCGGGTATTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACG--ACTAGCACAAA
*
74415260 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
74415277 CCGGATAT
1 CCGGATAT
74415285 CATTCAATTG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 75 0.96
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTATTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:74433355 original size:29 final size:29
Alignment explanation
Indices: 74433293--74433395 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
74433283 GTGACGAGAT
* * *
74433293 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
74433322 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
74433351 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
74433380 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
74433396 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:74473498 original size:20 final size:20
Alignment explanation
Indices: 74473473--74473511 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74473463 AGGGACTAAA
* *
74473473 AAGAAAAGTTGTAAAATTTG
1 AAGAAAAATTATAAAATTTG
74473493 AAGAAAAATTATAAAATTT
1 AAGAAAAATTATAAAATTT
74473512 TATGGATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.13, T:0.31
Consensus pattern (20 bp):
AAGAAAAATTATAAAATTTG
Found at i:74482996 original size:14 final size:14
Alignment explanation
Indices: 74482977--74483004 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
74482967 TCACCGTATG
74482977 TCATTTCGGGTCAA
1 TCATTTCGGGTCAA
74482991 TCATTTCGGGTCAA
1 TCATTTCGGGTCAA
74483005 ATCTCAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (14 bp):
TCATTTCGGGTCAA
Found at i:74490772 original size:28 final size:29
Alignment explanation
Indices: 74490735--74490858 Score: 137
Period size: 29 Copynumber: 4.3 Consensus size: 29
74490725 AAGTCTACAT
* *
74490735 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
74490763 TCATTCATATGCCCCATT-GGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
74490791 ACATAT-GTATGGCGCATTAGGCCCAAATC
1 ACAT-TCATATGGCCCATTAGGCCCAAATC
* *
74490820 ACATTCATATGACCCATTAGGCCCAAATA
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
74490849 ACACTCATAT
1 ACATTCATAT
74490859 TTATGCTTTC
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
27 5 0.06
28 31 0.39
29 43 0.54
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:74495158 original size:40 final size:40
Alignment explanation
Indices: 74495104--74495303 Score: 266
Period size: 40 Copynumber: 5.1 Consensus size: 40
74495094 TGAATGATAC
* * *
74495104 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
74495143 CCGGGTTAAGACCCGAAGGCATTTGT-CGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
74495182 CCGGGTTAAGA-CCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
74495221 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* **
74495261 CCGGGTTAAGACCCGAAGGCAATTGTGCTTG-TGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
74495300 CCGG
1 CCGG
74495304 CTAAATTCCG
Statistics
Matches: 143, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
38 14 0.10
39 60 0.42
40 69 0.48
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:74495316 original size:78 final size:78
Alignment explanation
Indices: 74495100--74495307 Score: 305
Period size: 78 Copynumber: 2.7 Consensus size: 78
74495090 CAATTGAATG
* * *
74495100 ATACCCGGGCTAAG-CCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTG-TTATATCCGGGCTAAGACCCGAAGGCA
74495164 TTTGTCGAGTTGCT
65 TTTGTCGAGTTGCT
* *
74495178 ATATCCGGGTTAAGA-CCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGTTATATCCGGGCTAAGACCCGAAGGCA
74495242 TTTGTGCGAGTTGCT
65 TTTGT-CGAGTTGCT
* *
74495257 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGTTATATCCGGGCTAA
74495308 ATTCCGAAGA
Statistics
Matches: 117, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
78 66 0.56
79 35 0.30
80 16 0.14
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGTTATATCCGGGCTAAGACCCGAAGGCAT
TTGTCGAGTTGCT
Found at i:74503274 original size:39 final size:40
Alignment explanation
Indices: 74503194--74503378 Score: 270
Period size: 39 Copynumber: 4.7 Consensus size: 40
74503184 TGAATGATAC
* * * *
74503194 CCGGGCTAAG-CCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
74503233 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTA-AT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
74503272 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
74503311 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
74503351 CCGGGTTAAGACCCGAAGGCAATTGTGC
1 CCGGGTTAAGACCCGAAGGCATTTGTGC
74503379 TTGTGGTTAT
Statistics
Matches: 134, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
38 2 0.01
39 80 0.60
40 50 0.37
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:74512607 original size:40 final size:39
Alignment explanation
Indices: 74512553--74512754 Score: 246
Period size: 40 Copynumber: 5.1 Consensus size: 39
74512543 TGAATGATAC
* * *
74512553 CCGGGCTAAG-CCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTG-TTATAT
* *
74512592 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
74512632 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGT-TGTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGT-TATAT
* * *
74512671 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* **
74512711 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
74512751 CCGG
1 CCGG
74512755 CTAAATTCCG
Statistics
Matches: 141, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
39 45 0.32
40 94 0.67
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (39 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:74512767 original size:79 final size:80
Alignment explanation
Indices: 74512549--74512758 Score: 309
Period size: 79 Copynumber: 2.7 Consensus size: 80
74512539 GCATTGAATG
* * * *
74512549 ATACCCGGGCTAAG-CCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
74512613 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * * *
74512628 AAATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
74512692 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* *
74512707 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
74512759 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 89 0.77
80 26 0.23
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:74522013 original size:79 final size:82
Alignment explanation
Indices: 74521873--74522057 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
74521863 TCGAATGATG
* * *
74521873 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
*
74521937 CGTGCGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
74521953 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
74522015 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
74522033 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
74522058 AGCGAGTCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 34 0.37
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:74522065 original size:40 final size:40
Alignment explanation
Indices: 74521874--74522065 Score: 151
Period size: 40 Copynumber: 4.8 Consensus size: 40
74521864 CGAATGATGT
* * * * *
74521874 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTCACTAAAC
** * * * * *
74521914 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAAT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTCACTAAAC
* * *
74521954 CCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAAC
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
*
74521993 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA-
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AAC
* *
74522033 CCGGGCTT-CGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGG-TTAAGTCCCGAAGGCATTTGTGCGAGTC
74522066 GTTATATCCG
Statistics
Matches: 126, Mismatches: 20, Indels: 12
0.80 0.13 0.08
Matches are distributed among these distances:
39 33 0.26
40 82 0.65
41 11 0.09
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAAC
Found at i:74522088 original size:79 final size:79
Alignment explanation
Indices: 74521873--74522090 Score: 183
Period size: 79 Copynumber: 2.7 Consensus size: 79
74521863 TCGAATGATG
* * * * ** *
74521873 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAGGA-TCCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-AAGTCACTAAACCCGGGTTA-AATTCCGAAGGCAT
*
74521936 TCGTGCGAGTTAATAAA
63 TCGTGCGAGTCAATAAA
* * * *
74521953 TCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
*
74522018 TGCGAGTCACTATAA
66 TGCGAGTCAATA-AA
** * ** * *
74522033 -CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGTTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGG
74522091 TACGTGATTC
Statistics
Matches: 113, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
79 69 0.61
80 44 0.39
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTAAACCCGGGTTAAATTCCGAAGGCATTCG
TGCGAGTCAATAAA
Found at i:74526739 original size:40 final size:40
Alignment explanation
Indices: 74526692--74526875 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
74526682 CTCGCACAAG
*
74526692 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
* * *
74526732 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
* * *
74526772 GCCTTCGGGTCTTAGCCTGGATATAG-CAACTCGCAAAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCATAAAT
* * * *
74526812 GCCTTCAGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
*
74526852 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
74526876 CATTCGAATA
Statistics
Matches: 122, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 120 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAAT
Found at i:74526787 original size:80 final size:79
Alignment explanation
Indices: 74526656--74526875 Score: 257
Period size: 80 Copynumber: 2.8 Consensus size: 79
74526646 ACCCAAGTAT
* ** * * *
74526656 CTTCGGGATTTAGCCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-C
*
74526720 -ACTAGCATAAATGC
65 AACTAGCAAAAATGC
* * *
74526734 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCTGGATATAGC
1 CTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
*
74526799 AACTCGCAAAAATGC
65 AACTAGCAAAAATGC
* * *
74526814 CTTC-AGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGA-CTTAG-CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
74526876 CATTCGAATA
Statistics
Matches: 121, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
78 12 0.10
79 19 0.16
80 90 0.74
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTAGCAAAAATGC
Found at i:74531560 original size:41 final size:41
Alignment explanation
Indices: 74531493--74531673 Score: 192
Period size: 40 Copynumber: 4.5 Consensus size: 41
74531483 ATTATACCTA
* *
74531493 AATTGCACTTGCGTGCCTCTGA-TTGTACTTCGGTACCCTTG
1 AATTGCACTTACGTGCCCCT-ATTTGTACTTCGGTACCCTTG
*
74531534 AATTGCACTTACATGCCCCTATTTGTACTTCGGTACCCTT-
1 AATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCTTG
* *
74531574 AATTGCACTTACGTGCCCCTATTTGTACTTCGGCACTCTTG
1 AATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCTTG
* * * * * *
74531615 -ATTCCACCTATGTTCTCCTATTTGTACTTTGGTA-CCTCTG
1 AATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCT-TG
* *
74531655 -GTTGCACTTCCGTGCCCCT
1 AATTGCACTTACGTGCCCCT
74531674 GGTTATACTC
Statistics
Matches: 116, Mismatches: 21, Indels: 7
0.81 0.15 0.05
Matches are distributed among these distances:
39 2 0.02
40 79 0.68
41 35 0.30
ACGTcount: A:0.15, C:0.30, G:0.17, T:0.38
Consensus pattern (41 bp):
AATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCTTG
Found at i:74532074 original size:17 final size:17
Alignment explanation
Indices: 74532054--74532086 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
74532044 TATATTATGG
74532054 ATGATCTTATATGTAAT
1 ATGATCTTATATGTAAT
*
74532071 ATGATGTTATATGTAA
1 ATGATCTTATATGTAA
74532087 AAAGAGATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.45
Consensus pattern (17 bp):
ATGATCTTATATGTAAT
Done.